BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029641
         (190 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
 pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
          Length = 476

 Score = 26.6 bits (57), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 37 VKLRKQKLSHLHFYLHDKVSGQNATAVRVAQAAMTNQ 73
          +KLR+++  ++ F+L D +S    TA R+ +  +T +
Sbjct: 21 IKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGK 57


>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
          Phosphate Bound
 pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
          Phosphate Bound
 pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
          Magnesium In M3
 pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
          Magnesium In M3
          Length = 478

 Score = 26.6 bits (57), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 37 VKLRKQKLSHLHFYLHDKVSGQNATAVRVAQAAMTNQ 73
          +KLR+++  ++ F+L D +S    TA R+ +  +T +
Sbjct: 21 IKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGK 57


>pdb|1Z1N|X Chain X, Crystal Structure Of The Sixteen Heme Cytochrome From
           Desulfovibrio Gigas
          Length = 560

 Score = 26.6 bits (57), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 28  FSKTLSPSSVKLRKQKLSHLHFYLHDKVSGQNATAVRVAQAAMTNQSPTFFGAVIMFDDA 87
           F++T+ P+S     ++        H+KV G   TA + A+    +  P   GA +    +
Sbjct: 94  FARTVDPTSKNAMAEQYHANCMACHEKVVGSYPTAPQAAECKRCHVGPGVEGATVTPKPS 153

Query: 88  LTM 90
           L +
Sbjct: 154 LDL 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,729,086
Number of Sequences: 62578
Number of extensions: 166623
Number of successful extensions: 350
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 5
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)