BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029641
         (190 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 12/183 (6%)

Query: 10  SILLILISITLVTAKSDHFSKTLSPSSVKLRKQKLSHLHFYLHDKVSGQNATAVRVAQ-- 67
           S LL+L    ++ A S        P   K  K  + + H  L++  +  NAT+  VA   
Sbjct: 3   SKLLVLFVFVMLFALSSAIPNKRKP--YKPCKNLVFYFHDILYNGKNAANATSAIVAAPE 60

Query: 68  -AAMTNQSP-TFFGAVIMFDDALTMEPERNSKLVGRAQGMYGSASQTETGLAVVMNFAF- 124
             ++T  +P + FG +I+FDD +T+    +SK VGRAQG Y     T+      ++F F 
Sbjct: 61  GVSLTKLAPQSHFGNIIVFDDPITLSHSLSSKQVGRAQGFY--IYDTKNTYTSWLSFTFV 118

Query: 125 MEGKYNGSTLSVMGRNAVFSTVREMPIIGGSGLFRFARGYVQAKTHTIDLKTGDAVVEYN 184
           +   ++  T++  G + + +  R++ + GG+G F   RG     T T D   G+A     
Sbjct: 119 LNSTHHQGTITFAGADPIVAKTRDISVTGGTGDFFMHRG---IATITTDAFEGEAYFRLG 175

Query: 185 VYV 187
           VY+
Sbjct: 176 VYI 178


>sp|Q9TLW3|ACCD_CYACA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta,
           chloroplastic OS=Cyanidium caldarium GN=accD PE=3 SV=1
          Length = 267

 Score = 33.1 bits (74), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 17/137 (12%)

Query: 44  LSHLHFYLHDKVSGQNATAVRVAQAAMTNQSPTFFGAVIMFDDALTMEP----ERNSKL- 98
           +S   FY HDKV  +      +  +   N        + ++++ L+ +P    ++   + 
Sbjct: 23  ISKFDFYKHDKVCPECNYHFPMYSSERINHIIDLKSWIPLYNNLLSGDPLGFCDKKPYIT 82

Query: 99  -VGRAQGMYGSASQTETGLA---------VVMNFAFMEGKYNGSTLSVMGRNAVFSTVRE 148
            +   Q + G     +TG+           VM+F FM G    +    + R   FST  E
Sbjct: 83  RLAENQKITGLDEAVQTGIGRINNISASVAVMDFNFMGGSMGSAVGEKITRLVEFSTKEE 142

Query: 149 MP--IIGGSGLFRFARG 163
           +P  II  SG  R   G
Sbjct: 143 LPIVIISASGGARMQEG 159


>sp|B0CDQ3|Y4276_ACAM1 UPF0246 protein AM1_4276 OS=Acaryochloris marina (strain MBIC
           11017) GN=AM1_4276 PE=3 SV=1
          Length = 252

 Score = 31.2 bits (69), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 77  FFGAVIMFDDALTMEPERNSKLVGRAQGMYGSASQTETGLAVVMNFAFMEGKYNGSTLSV 136
           F+GA I   DAL  +   ++ LV  A G Y  A Q +     V+N AF E K NG T  V
Sbjct: 145 FWGAQIT--DALNADLASDTTLVNLASGEYFKAVQPQQLNGKVLNIAFKENK-NG-TYKV 200

Query: 137 MGRNA 141
           +G +A
Sbjct: 201 IGIHA 205


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.132    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,347,048
Number of Sequences: 539616
Number of extensions: 2197813
Number of successful extensions: 4976
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4974
Number of HSP's gapped (non-prelim): 5
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)