Query 029641
Match_columns 190
No_of_seqs 119 out of 536
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 16:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 5.9E-53 1.3E-57 336.6 19.0 144 43-189 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.8 0.0016 3.4E-08 53.2 14.8 120 41-172 4-127 (176)
3 PLN02343 allene oxide cyclase 97.2 0.026 5.6E-07 47.9 14.5 122 40-172 53-178 (229)
4 PF11528 DUF3224: Protein of u 47.9 1.4E+02 0.003 23.6 11.2 88 95-189 39-133 (134)
5 PF06692 MNSV_P7B: Melon necro 23.0 1.2E+02 0.0026 20.9 3.1 23 12-34 23-45 (61)
6 PF08239 SH3_3: Bacterial SH3 22.9 73 0.0016 20.1 2.0 17 87-103 4-20 (55)
7 PF06347 SH3_4: Bacterial SH3 21.6 62 0.0013 20.8 1.5 17 87-103 6-22 (55)
8 KOG1692 Putative cargo transpo 18.4 5.9E+02 0.013 21.7 7.0 68 118-190 43-115 (201)
9 COG2372 CopC Uncharacterized p 16.1 4.8E+02 0.01 20.7 5.6 68 1-69 1-70 (127)
10 PF11849 DUF3369: Domain of un 12.9 2.1E+02 0.0045 23.0 2.9 22 144-165 71-92 (174)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=5.9e-53 Score=336.57 Aligned_cols=144 Identities=52% Similarity=0.849 Sum_probs=135.4
Q ss_pred ceeEEEEEEeeecCCCCcceEEeecccccCCCCCcceeEEEEeeccccCCCCCCcceeeEEEEEEEecCCCceeEEEEEE
Q 029641 43 KLSHLHFYLHDKVSGQNATAVRVAQAAMTNQSPTFFGAVIMFDDALTMEPERNSKLVGRAQGMYGSASQTETGLAVVMNF 122 (190)
Q Consensus 43 ~~t~l~fY~Hd~~sgpn~t~~~va~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~~~~ 122 (190)
|++||+|||||+++|||+|+++|++++.++ ..+||+++|+||||||||+++||+||||||+|+.+++++.+|++++++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~--~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~ 78 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPS--SSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTL 78 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCCC--CCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEE
Confidence 679999999999999999999999986542 238999999999999999999999999999999999999999999999
Q ss_pred EeccCccCCceEEEEccccccCcceeEEEEeccccccceEeEEEEEEEEecCCCCCeEEEEEEEEEe
Q 029641 123 AFMEGKYNGSTLSVMGRNAVFSTVREMPIIGGSGLFRFARGYVQAKTHTIDLKTGDAVVEYNVYVFH 189 (190)
Q Consensus 123 vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArG~a~~~t~~~~~~~~~~i~e~~v~v~h 189 (190)
+|++++||||||+++|+++..+++||||||||||+||||||||+++++ .+.+++++|+|||||++|
T Consensus 79 vF~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 79 VFEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 999999999999999999998999999999999999999999999999 334578999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.81 E-value=0.0016 Score=53.22 Aligned_cols=120 Identities=21% Similarity=0.347 Sum_probs=73.2
Q ss_pred CCceeEEEEEEeeecCCCCcceEEeecccccCCCCCcceeEEEEeeccccCCCCCCcceeeEEEEEEEecC----CCcee
Q 029641 41 KQKLSHLHFYLHDKVSGQNATAVRVAQAAMTNQSPTFFGAVIMFDDALTMEPERNSKLVGRAQGMYGSASQ----TETGL 116 (190)
Q Consensus 41 ~~~~t~l~fY~Hd~~sgpn~t~~~va~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~~----~~~~~ 116 (190)
+.|...|++|=-+-.....|.-+++.+ +.....|+.+-|.|+|++|.. -+-+|--+|+-+.-.. .+..+
T Consensus 4 p~kvqel~vyeiNErdR~SPa~L~ls~-----k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~Gdry 76 (176)
T PF06351_consen 4 PTKVQELSVYEINERDRGSPAYLRLSQ-----KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRY 76 (176)
T ss_dssp ----EEEEEEEE--S-S--S--B--SS-----SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEE
T ss_pred ccceEEEEEEEEcccccCCCcEEEccc-----ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceE
Confidence 345566777743322111222223322 334568999999999999976 6889999999765442 33344
Q ss_pred EEEEEEEeccCccCCceEEEEccccccCcceeEEEEeccccccceEeEEEEEEEEe
Q 029641 117 AVVMNFAFMEGKYNGSTLSVMGRNAVFSTVREMPIIGGSGLFRFARGYVQAKTHTI 172 (190)
Q Consensus 117 ~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArG~a~~~t~~~ 172 (190)
=-.+++.|-+ | | .|+++|..-.- +..-++|.||||-|+.|+|-++++..-+
T Consensus 77 EaiySfyfGd--y-G-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 77 EAIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEEE-GG--G-E-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred EEEEEEEecc--c-c-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeec
Confidence 4556677743 3 4 79999986442 5668999999999999999999988764
No 3
>PLN02343 allene oxide cyclase
Probab=97.17 E-value=0.026 Score=47.89 Aligned_cols=122 Identities=21% Similarity=0.355 Sum_probs=82.0
Q ss_pred cCCceeEEEEEEeeecCCCCcceEEeecccccCCCCCcceeEEEEeeccccCCCCCCcceeeEEEEEEEecC----CCce
Q 029641 40 RKQKLSHLHFYLHDKVSGQNATAVRVAQAAMTNQSPTFFGAVIMFDDALTMEPERNSKLVGRAQGMYGSASQ----TETG 115 (190)
Q Consensus 40 ~~~~~t~l~fY~Hd~~sgpn~t~~~va~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~~----~~~~ 115 (190)
++.|...|++|=-+-.-...|.-.+..+.+ .....|+.+-|-+.|+.|.- -|-+|--.|+-+.-.. .+..
T Consensus 53 ~p~kvQel~VYEiNErDR~SPa~L~ls~k~----~~~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDr 126 (229)
T PLN02343 53 RPTKVQELSVYEINERDRGSPAFLKLSKKS----VENALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDR 126 (229)
T ss_pred CCceeEEEEEEEeccccCCCcceEEcccCc----ccccccceeccccccccchh--hhhhcccceeEEEEEeccccCCce
Confidence 345666666663332211122222333221 22558999999999999863 4678888998765443 3445
Q ss_pred eEEEEEEEeccCccCCceEEEEccccccCcceeEEEEeccccccceEeEEEEEEEEe
Q 029641 116 LAVVMNFAFMEGKYNGSTLSVMGRNAVFSTVREMPIIGGSGLFRFARGYVQAKTHTI 172 (190)
Q Consensus 116 ~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~Fr~ArG~a~~~t~~~ 172 (190)
+=..+++.|-| | | .|+++|..-.- +..-++|.||+|-|+.|+|-+++..+-+
T Consensus 127 yEa~ySfyfGD--y-G-HisvqGpylty-eDt~LaiTGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 127 YEAIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAITGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred eEEEEEEEecC--c-c-eeEEecccccc-ccceEEeecCcceeecceeEEEEeeeee
Confidence 66667778854 3 4 69999996442 4568999999999999999999988765
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=47.95 E-value=1.4e+02 Score=23.62 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCcceeeEEEEEEEecC-CCceeEEEEEEEec--cCccCCceEEEEccccc--cCcceeEEEE--eccccccceEeEEEE
Q 029641 95 NSKLVGRAQGMYGSASQ-TETGLAVVMNFAFM--EGKYNGSTLSVMGRNAV--FSTVREMPII--GGSGLFRFARGYVQA 167 (190)
Q Consensus 95 ~Sk~VGRaQG~~~~~~~-~~~~~~~~~~~vF~--~g~~~GSTl~v~G~~~~--~~~~rE~aVV--GGTG~Fr~ArG~a~~ 167 (190)
.-.+.|++++-|+.+-. ++...+..+.. |+ -+.-+|| +.++-.-.. .....+|-|| -|||++...+|-..+
T Consensus 39 ~G~l~Gts~~~~L~~y~~~g~a~yva~E~-~~Gtl~Gr~Gs-Fvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~ 116 (134)
T PF11528_consen 39 SGDLEGTSTGEYLMAYDPDGSAGYVAFER-FTGTLDGRSGS-FVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTI 116 (134)
T ss_dssp -TTEEEEEEEEEEEEEECTTEEEEEEEEE-EEEEETTEEEE-EEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEE
T ss_pred EeEEEEEEEEEEEEEEcCCCcEEEEEEEE-EEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEE
Confidence 34577888888877655 34444444432 22 1123453 555443222 2234689999 999999999999987
Q ss_pred EEEEecCCCCCeEEEEEEEEEe
Q 029641 168 KTHTIDLKTGDAVVEYNVYVFH 189 (190)
Q Consensus 168 ~t~~~~~~~~~~i~e~~v~v~h 189 (190)
+... +...++|+..+.+
T Consensus 117 ~~~~-----g~h~y~f~y~l~d 133 (134)
T PF11528_consen 117 TIDE-----GQHAYDFEYTLPD 133 (134)
T ss_dssp EEET-----TCEEEEEEEEEEE
T ss_pred EECC-----CCceeeEEEECCC
Confidence 6553 4446777776653
No 5
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=22.96 E-value=1.2e+02 Score=20.90 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=10.0
Q ss_pred HHHHHhhhhhcccccceeeecCC
Q 029641 12 LLILISITLVTAKSDHFSKTLSP 34 (190)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p 34 (190)
.+++|.|++-..+...|.-..+.
T Consensus 23 s~~f~lI~~l~qq~~~y~HH~d~ 45 (61)
T PF06692_consen 23 SFVFFLITSLGQQGNTYVHHFDN 45 (61)
T ss_pred HHHHHHHhhhccCCCeeEEeecC
Confidence 34455543333343444444443
No 6
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=22.91 E-value=73 Score=20.08 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=14.0
Q ss_pred ccccCCCCCCcceeeEE
Q 029641 87 ALTMEPERNSKLVGRAQ 103 (190)
Q Consensus 87 ~lt~Gp~~~Sk~VGRaQ 103 (190)
.|+.+|+.+|+.++.+.
T Consensus 4 nvR~~p~~~s~~i~~l~ 20 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQLP 20 (55)
T ss_dssp EEESSSSTTSTEEEEEE
T ss_pred EEEeCCCCCChhhEEEe
Confidence 47889999999998853
No 7
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=21.63 E-value=62 Score=20.79 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.6
Q ss_pred ccccCCCCCCcceeeEE
Q 029641 87 ALTMEPERNSKLVGRAQ 103 (190)
Q Consensus 87 ~lt~Gp~~~Sk~VGRaQ 103 (190)
+|+.+|+.+|+++.++.
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Confidence 68899999999998763
No 8
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=18.37 E-value=5.9e+02 Score=21.74 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=39.4
Q ss_pred EEEEEEeccCccCCceEEEEcccc--ccCcceeEEEEeccccccceEeEEEEEEEEec---CCCCCeEEEEEEEEEeC
Q 029641 118 VVMNFAFMEGKYNGSTLSVMGRNA--VFSTVREMPIIGGSGLFRFARGYVQAKTHTID---LKTGDAVVEYNVYVFHY 190 (190)
Q Consensus 118 ~~~~~vF~~g~~~GSTl~v~G~~~--~~~~~rE~aVVGGTG~Fr~ArG~a~~~t~~~~---~~~~~~i~e~~v~v~hy 190 (190)
+..++++.+|.+.|=-+.|.|... +....+|-+ |+|.++-=.--.-+.+++ ++-...++-++|++-||
T Consensus 43 ~~vsF~v~~gg~~~vd~~I~gP~~~~i~~~~~~ss-----gk~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~ 115 (201)
T KOG1692|consen 43 LSVSFEVIDGGFLGVDVEITGPDGKIIHKGKRESS-----GKYTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHA 115 (201)
T ss_pred EEEEEEEecCCccceeEEEECCCCchhhhcccccC-----ceEEEEecCCceEEEEecCCCCCCCceEEEEEEEEeec
Confidence 345555666777777788888743 233345543 777765433223334443 11135688899998875
No 9
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=16.08 E-value=4.8e+02 Score=20.69 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=37.2
Q ss_pred CCccchhH-HHHHHHHHhh-hhhcccccceeeecCCccccccCCceeEEEEEEeeecCCCCcceEEeeccc
Q 029641 1 MATTFPKL-TSILLILISI-TLVTAKSDHFSKTLSPSSVKLRKQKLSHLHFYLHDKVSGQNATAVRVAQAA 69 (190)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~t~l~fY~Hd~~sgpn~t~~~va~~~ 69 (190)
|++++--+ ++++++++++ ..+.+....|..+..|.....-.+-.-.++|++-|.+. ++=..+.+.++.
T Consensus 1 ~~~~~r~~~~~~~~~l~~~~~~~~a~AHa~l~~s~Pad~s~v~aaP~~i~L~Fse~ve-~~fs~~~l~~~d 70 (127)
T COG2372 1 MARTARALALSALALLMLALVTPQAFAHAYLVSSNPADNSVVTAAPAAITLEFSEGVE-PGFSGAKLTGPD 70 (127)
T ss_pred CchhHHHHHHHHHHHHHHHhcCcchhheeeeecCCCCCcchhhcCceeEEEecCCccC-CCcceeEEECCC
Confidence 44444433 3333444443 22224445677777776544434666778899998774 233455666654
No 10
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=12.86 E-value=2.1e+02 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=16.6
Q ss_pred CcceeEEEEeccccccceEeEE
Q 029641 144 STVREMPIIGGSGLFRFARGYV 165 (190)
Q Consensus 144 ~~~rE~aVVGGTG~Fr~ArG~a 165 (190)
....++-|++|||+|.-.-|--
T Consensus 71 ~~~~~~~VlaatG~f~~~~~~~ 92 (174)
T PF11849_consen 71 SDDNEFRVLAATGRFESLIGQP 92 (174)
T ss_pred CCCCCEEEEEEeccchhhcCCc
Confidence 3456899999999998665543
Done!