Query 029641
Match_columns 190
No_of_seqs 119 out of 536
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 02:50:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.7 8.8E-07 3E-11 71.9 15.0 102 75-188 42-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.5 8.5E-06 2.9E-10 66.4 16.2 100 76-187 51-154 (195)
3 3h6j_A Neuraminidase, sialidas 25.2 56 0.0019 28.0 3.5 54 113-168 372-435 (438)
4 2q03_A Uncharacterized protein 17.8 3.2E+02 0.011 20.5 11.2 84 96-185 45-135 (138)
5 2krs_A Probable enterotoxin; a 16.2 69 0.0024 21.0 1.8 16 87-102 12-27 (74)
6 2kq8_A Cell WALL hydrolase; GF 14.0 56 0.0019 21.2 0.8 16 87-102 13-28 (70)
7 2kt8_A Probable surface protei 11.4 97 0.0033 20.5 1.5 16 87-102 14-29 (76)
8 2qqr_A JMJC domain-containing 9.9 3.4E+02 0.012 20.0 4.2 56 74-149 62-117 (118)
9 2xdp_A Lysine-specific demethy 9.8 4.1E+02 0.014 19.7 4.6 57 74-150 63-119 (123)
10 3nqh_A Glycosyl hydrolase; str 8.3 5.5E+02 0.019 22.9 5.6 30 128-157 346-375 (441)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.67 E-value=8.8e-07 Score=71.94 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=79.1
Q ss_pred CCcceeEEEEeeccccCCCCCCcceeeEEEEEEEec----CCCceeEEEEEEEeccCccCCceEEEEccccccCcceeEE
Q 029641 75 PTFFGAVIMFDDALTMEPERNSKLVGRAQGMYGSAS----QTETGLAVVMNFAFMEGKYNGSTLSVMGRNAVFSTVREMP 150 (190)
Q Consensus 75 ~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~----~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~a 150 (190)
...-|+.+.|+++|.+|.. -+.||.-+|+-+... ..+..+-..+++.|-+. | .|+++|....- +...++
T Consensus 42 ~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~LA 114 (188)
T 2brj_A 42 MFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFLA 114 (188)
T ss_dssp SSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEEE
T ss_pred CcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCCC---c-eEEEecccccc-ccceee
Confidence 3458999999999997654 589999999977664 33455666677778542 4 79999995322 557999
Q ss_pred EEeccccccceEeEEEEEEEEecCCCCCeEEEEEEEEE
Q 029641 151 IIGGSGLFRFARGYVQAKTHTIDLKTGDAVVEYNVYVF 188 (190)
Q Consensus 151 VVGGTG~Fr~ArG~a~~~t~~~~~~~~~~i~e~~v~v~ 188 (190)
|.||||.|+.|+|.+++++..+. ..++|.+|+.
T Consensus 115 ITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 115 ITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred EecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 99999999999999999998752 2478888874
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.49 E-value=8.5e-06 Score=66.43 Aligned_cols=100 Identities=20% Similarity=0.309 Sum_probs=75.3
Q ss_pred CcceeEEEEeeccccCCCCCCcceeeEEEEEEEec----CCCceeEEEEEEEeccCccCCceEEEEccccccCcceeEEE
Q 029641 76 TFFGAVIMFDDALTMEPERNSKLVGRAQGMYGSAS----QTETGLAVVMNFAFMEGKYNGSTLSVMGRNAVFSTVREMPI 151 (190)
Q Consensus 76 ~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~----~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~aV 151 (190)
...|+.+.|.++|.+|.. -+-||...|+-+... ..+..+--.+++.|.+ .| +|+++|..-. -+..-++|
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t-~eDs~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYIT-YEDSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEET-TBCEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceec-cCceeEEE
Confidence 459999999999999987 678999999976653 2233444557777755 35 6999999633 34567999
Q ss_pred EeccccccceEeEEEEEEEEecCCCCCeEEEEEEEE
Q 029641 152 IGGSGLFRFARGYVQAKTHTIDLKTGDAVVEYNVYV 187 (190)
Q Consensus 152 VGGTG~Fr~ArG~a~~~t~~~~~~~~~~i~e~~v~v 187 (190)
+||||.|+.|+|-+++....+- -.+-|..|+
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~p-----fklfytfyl 154 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIFP-----FKLFYTFYL 154 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEETT-----TEEEEEEEE
T ss_pred ecCcceEcccEEEEEEeEeeee-----eeEEEEEEe
Confidence 9999999999999999887652 134555554
No 3
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=25.17 E-value=56 Score=28.00 Aligned_cols=54 Identities=28% Similarity=0.455 Sum_probs=33.9
Q ss_pred CceeEEEEEEEeccCccCCceEEEE-ccccccCcceeEEEEeccccc---------cceEeEEEEE
Q 029641 113 ETGLAVVMNFAFMEGKYNGSTLSVM-GRNAVFSTVREMPIIGGSGLF---------RFARGYVQAK 168 (190)
Q Consensus 113 ~~~~~~~~~~vF~~g~~~GSTl~v~-G~~~~~~~~rE~aVVGGTG~F---------r~ArG~a~~~ 168 (190)
...|-..|--.|++|.++||--++. |.-.+ ....-+-|=|||.| |.|.||...+
T Consensus 372 pstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvr 435 (438)
T 3h6j_A 372 PSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVR 435 (438)
T ss_dssp CSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEE
T ss_pred CcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEE
Confidence 3457777778899999999866553 22222 11222345577777 6788887655
No 4
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=17.82 E-value=3.2e+02 Score=20.53 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=48.4
Q ss_pred CcceeeEEEEEEEecC-CCceeEEEEEEEec--cCccCCceEEEEcc--ccccCcceeEEEEe--ccccccceEeEEEEE
Q 029641 96 SKLVGRAQGMYGSASQ-TETGLAVVMNFAFM--EGKYNGSTLSVMGR--NAVFSTVREMPIIG--GSGLFRFARGYVQAK 168 (190)
Q Consensus 96 Sk~VGRaQG~~~~~~~-~~~~~~~~~~~vF~--~g~~~GSTl~v~G~--~~~~~~~rE~aVVG--GTG~Fr~ArG~a~~~ 168 (190)
-.+.|+.++-++.+-. ++...++.+.. |+ -+.-+|| +.++-. ..-......|-||= |||++...+|-..++
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~-f~Gtl~Gr~Gs-Fvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~ 122 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEH-FTGSLGDKKGS-FILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFV 122 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEE-EEEEETTEEEE-EEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEE-EEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEE
Confidence 4477888888876665 44333433321 21 1123443 544443 22223346889987 999999999999885
Q ss_pred EEEecCCCCCeEEEEEE
Q 029641 169 THTIDLKTGDAVVEYNV 185 (190)
Q Consensus 169 t~~~~~~~~~~i~e~~v 185 (190)
... ++..-++|+.
T Consensus 123 ~~~----~G~h~Y~~~y 135 (138)
T 2q03_A 123 STE----NGQANYQITL 135 (138)
T ss_dssp ECS----TTEEEEEEEE
T ss_pred Eec----CCceEEEEEE
Confidence 432 2444455444
No 5
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=16.21 E-value=69 Score=21.02 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.1
Q ss_pred ccccCCCCCCcceeeE
Q 029641 87 ALTMEPERNSKLVGRA 102 (190)
Q Consensus 87 ~lt~Gp~~~Sk~VGRa 102 (190)
.|+.+|+.++++||++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6899999999999875
No 6
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=14.02 E-value=56 Score=21.23 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=13.9
Q ss_pred ccccCCCCCCcceeeE
Q 029641 87 ALTMEPERNSKLVGRA 102 (190)
Q Consensus 87 ~lt~Gp~~~Sk~VGRa 102 (190)
.|+.||+.++++||++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5789999999999875
No 7
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=11.43 E-value=97 Score=20.52 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.5
Q ss_pred ccccCCCCCCcceeeE
Q 029641 87 ALTMEPERNSKLVGRA 102 (190)
Q Consensus 87 ~lt~Gp~~~Sk~VGRa 102 (190)
.|+.||+.+++++|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 6889999999998864
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=9.86 E-value=3.4e+02 Score=19.99 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=34.6
Q ss_pred CCCcceeEEEEeeccccCCCCCCcceeeEEEEEEEecCCCceeEEEEEEEeccCccCCceEEEEccccccCcceeE
Q 029641 74 SPTFFGAVIMFDDALTMEPERNSKLVGRAQGMYGSASQTETGLAVVMNFAFMEGKYNGSTLSVMGRNAVFSTVREM 149 (190)
Q Consensus 74 ~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~ 149 (190)
.+..-|..+-+.| ++|.-.+++-+|+-+ ...+++.|++| |.+ ..-|+.+-....|+
T Consensus 62 GpP~~G~~V~V~W--~DG~~y~a~f~g~~~-------------~~~Y~V~feDg----s~~-~~kR~~iyt~~E~l 117 (118)
T 2qqr_A 62 GPPAEGEVVQVRW--TDGQVYGAKFVASHP-------------IQMYQVEFEDG----SQL-VVKRDDVYTLDEEL 117 (118)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEEEE-------------EEEEEEEETTS----CEE-EECGGGEEETTSCC
T ss_pred CCCCCCCEEEEEc--CCCCEeeeEEeceeE-------------EEEEEEEECCC----CEE-EEcHHHeeccccCC
Confidence 3556788888888 788766666666532 44577889874 433 44555543333333
No 9
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=9.76 E-value=4.1e+02 Score=19.73 Aligned_cols=57 Identities=23% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCCcceeEEEEeeccccCCCCCCcceeeEEEEEEEecCCCceeEEEEEEEeccCccCCceEEEEccccccCcceeEE
Q 029641 74 SPTFFGAVIMFDDALTMEPERNSKLVGRAQGMYGSASQTETGLAVVMNFAFMEGKYNGSTLSVMGRNAVFSTVREMP 150 (190)
Q Consensus 74 ~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRaQG~~~~~~~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~rE~a 150 (190)
++..-|..+-+.| ++|.-.+++.+|+- ....+++.|++| |.+ ..-|+.+-....|+|
T Consensus 63 GpP~~G~~V~V~W--~DG~~y~a~f~g~~-------------~~~~YtV~FeDg----s~~-~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 63 GPPAEGEVVQVKW--PDGKLYGAKYFGSN-------------IAHMYQVEFEDG----SQI-AMKREDIYTLDEELP 119 (123)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEEE-------------EEEEEEEECTTS----CEE-EEEGGGCCCSSSCCC
T ss_pred CCCCCCCEEEEEc--CCCCEEeEEEeeee-------------eEEEEEEEECCC----CeE-EecHHHccccccccc
Confidence 4556788888888 67776665555553 244578889875 434 445665544444443
No 10
>3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron}
Probab=8.30 E-value=5.5e+02 Score=22.88 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=25.6
Q ss_pred ccCCceEEEEccccccCcceeEEEEecccc
Q 029641 128 KYNGSTLSVMGRNAVFSTVREMPIIGGSGL 157 (190)
Q Consensus 128 ~~~GSTl~v~G~~~~~~~~rE~aVVGGTG~ 157 (190)
.|.|+-+.|.|..........++|.||-|+
T Consensus 346 ~f~g~~~~~~~~~~~~~g~a~~~~~~~~~~ 375 (441)
T 3nqh_A 346 PFTGSCVAVMGETNCHSGYARMNILDKKGE 375 (441)
T ss_dssp EECSSCEEEEEEEBTTBCEEEEEEECTTCC
T ss_pred EEcceEEEEEEeecCCCCEEEEEecCCCCc
Confidence 367899999998777677889999999998
Done!