BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029644
         (190 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ON3|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (With
           Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
 pdb|1ON3|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (With
           Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
 pdb|1ON3|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (With
           Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
 pdb|1ON3|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (With
           Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
 pdb|1ON3|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (With
           Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
 pdb|1ON3|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (With
           Methylmalonyl-Coenzyme A And Methylmalonic Acid Bound)
 pdb|1ON9|A Chain A, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (with
           Hydrolyzed Methylmalonyl-coenzyme A Bound)
 pdb|1ON9|B Chain B, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (with
           Hydrolyzed Methylmalonyl-coenzyme A Bound)
 pdb|1ON9|C Chain C, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (with
           Hydrolyzed Methylmalonyl-coenzyme A Bound)
 pdb|1ON9|D Chain D, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (with
           Hydrolyzed Methylmalonyl-coenzyme A Bound)
 pdb|1ON9|E Chain E, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (with
           Hydrolyzed Methylmalonyl-coenzyme A Bound)
 pdb|1ON9|F Chain F, Transcarboxylase 12s Crystal Structure: Hexamer Assembly
           And Substrate Binding To A Multienzyme Core (with
           Hydrolyzed Methylmalonyl-coenzyme A Bound)
          Length = 523

 Score = 30.0 bits (66), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 51  SDYGKLKFSN--LTGL-KYMVCISGICAGYAFIAAVSSWLRFLVTKAWLFFISDQIV 104
           S YGK+ F+N  L+G+   +  I+G CAG A  +   +    +  KA +F    Q++
Sbjct: 152 SGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVI 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.136    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,219,159
Number of Sequences: 62578
Number of extensions: 180669
Number of successful extensions: 326
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 1
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)