Query 029644
Match_columns 190
No_of_seqs 107 out of 445
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 16:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 2E-43 4.3E-48 282.7 16.2 145 26-170 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 2E-38 4.2E-43 251.5 15.4 140 19-158 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.7 9.1E-07 2E-11 67.8 12.9 137 22-164 3-143 (144)
4 KOG3088 Secretory carrier memb 74.1 8.3 0.00018 34.3 5.6 81 95-189 202-285 (313)
5 PRK10591 hypothetical protein; 44.8 42 0.00091 24.9 4.0 36 142-177 39-74 (92)
6 KOG2662 Magnesium transporters 42.6 32 0.00069 32.0 3.8 74 3-82 323-402 (414)
7 PF12606 RELT: Tumour necrosis 38.0 41 0.00089 22.1 2.8 31 151-181 4-34 (50)
8 PF05767 Pox_A14: Poxvirus vir 36.6 1E+02 0.0022 22.8 5.0 25 109-133 21-46 (92)
9 PF05702 Herpes_UL49_5: Herpes 32.6 1.2E+02 0.0026 22.8 4.8 49 123-171 37-85 (98)
10 COG3647 Predicted membrane pro 29.6 3.3E+02 0.0071 22.6 7.4 34 117-156 164-197 (205)
11 PRK13183 psbN photosystem II r 27.7 68 0.0015 20.8 2.5 27 155-181 11-37 (46)
12 KOG4016 Synaptic vesicle prote 26.7 4.1E+02 0.009 22.8 13.3 156 7-170 7-170 (233)
13 PHA03048 IMV membrane protein; 25.2 2.8E+02 0.006 20.6 5.5 25 111-135 23-47 (93)
14 PF07077 DUF1345: Protein of u 24.3 2.1E+02 0.0046 23.3 5.5 77 4-87 30-106 (180)
15 CHL00020 psbN photosystem II p 22.9 76 0.0016 20.3 2.0 28 154-181 7-34 (43)
16 PF02468 PsbN: Photosystem II 22.4 1.1E+02 0.0025 19.5 2.7 26 157-182 10-35 (43)
17 PF07172 GRP: Glycine rich pro 20.2 1.3E+02 0.0028 22.1 3.1 14 157-170 15-28 (95)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=2e-43 Score=282.73 Aligned_cols=145 Identities=28% Similarity=0.501 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccc-----ceeeecchhHHHHHHHHHHHHHHHHHHHHHHHHh---h-hhchHHH
Q 029644 26 CFLRISAIPLSIAAIWLTVTNQEDNSDYG-----KLKFSNLTGLKYMVCISGICAGYAFIAAVSSWLR---F-LVTKAWL 96 (190)
Q Consensus 26 l~LR~~a~~~sl~a~vvM~t~~qt~~~~~-----~~~f~~~~af~ylv~an~I~~~Ys~lql~~~~~~---~-~~~~~~~ 96 (190)
++||+++++++++|+++|+||+|+.++++ +++|+|+|+|+|+|++|+|+++|+++|+++++++ + ....+|+
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA 80 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 47999999999999999999999998754 7999999999999999999999999999998863 2 1245899
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029644 97 FFISDQIVAYLMVTSGAAVLEILYLAYNGDQQVTWSETCSTYGKFCSRIKIAFVLHAVALGCFIILAVISAFRF 170 (190)
Q Consensus 97 ~f~~Dqv~ayLL~saasAA~~v~~l~~~G~~~~~W~~iC~~~~~FC~~~~~Sv~lsflA~~~~~~~s~iSa~~L 170 (190)
+|++||+++||++||++||++++|++|+||+|++|+|+|+++++||||+.+|++++|+|++++++++++|++++
T Consensus 81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=2e-38 Score=251.52 Aligned_cols=140 Identities=32% Similarity=0.569 Sum_probs=130.8
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHhccCCCccc---cceeeecchhHHHHHHHHHHHHHHHHHHHHHHHHh------h
Q 029644 19 PMLKLVDCFLRISAIPLSIAAIWLTVTNQEDNSDY---GKLKFSNLTGLKYMVCISGICAGYAFIAAVSSWLR------F 89 (190)
Q Consensus 19 ~~~~~~~l~LR~~a~~~sl~a~vvM~t~~qt~~~~---~~~~f~~~~af~ylv~an~I~~~Ys~lql~~~~~~------~ 89 (190)
+..+..+++||+++++++++|+++|++|+||.++. .+++|+|+++|+|++++|+|+++|+++|++.+++. +
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~~~ 80 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGKLR 80 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 35688999999999999999999999999998764 48999999999999999999999999999999863 2
Q ss_pred hhchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCccccccccccchhhhhhhHHHHHHHHHHHHHH
Q 029644 90 LVTKAWLFFISDQIVAYLMVTSGAAVLEILYLAYNGDQQVTWSETCSTYGKFCSRIKIAFVLHAVALGC 158 (190)
Q Consensus 90 ~~~~~~~~f~~Dqv~ayLL~saasAA~~v~~l~~~G~~~~~W~~iC~~~~~FC~~~~~Sv~lsflA~~~ 158 (190)
.+...|++|++||+++||++||++||+++++++++|+++++|+++|+.+++||+|+++|++++|+|+++
T Consensus 81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 356789999999999999999999999999999999999999999999999999999999999999874
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.65 E-value=9.1e-07 Score=67.80 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=101.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeecchhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhchHHHH
Q 029644 22 KLVDCFLRISAIPLSIAAIWLTVTNQEDNSDYGKLKFSNLTGLKYMVCISGICAGYAFIAAVSSWLR----FLVTKAWLF 97 (190)
Q Consensus 22 ~~~~l~LR~~a~~~sl~a~vvM~t~~qt~~~~~~~~f~~~~af~ylv~an~I~~~Ys~lql~~~~~~----~~~~~~~~~ 97 (190)
+....+||+++++++++.+.+++....+.. .......++..|.+.+.++...+++..++....+ +...+.+.+
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGS---QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIPWPLVE 79 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhccc---cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhH
Confidence 456789999999999999999998874221 1245667788999999999999998888887742 234456689
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 029644 98 FISDQIVAYLMVTSGAAVLEILYLAYNGDQQVTWSETCSTYGKFCSRIKIAFVLHAVALGCFIILAV 164 (190)
Q Consensus 98 f~~Dqv~ayLL~saasAA~~v~~l~~~G~~~~~W~~iC~~~~~FC~~~~~Sv~lsflA~~~~~~~s~ 164 (190)
++.|.+++.+-+.+..+-+.-....+.+++ +++.+....+-|+...++.+++|+.++.+..+.+
T Consensus 80 ~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 80 FIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877665433222112211 2233445567799999999999999999988765
No 4
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.09 E-value=8.3 Score=34.30 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 029644 95 WLFFISDQIVAYLMVTSGAAVLEILYLAYNGDQQVTWSETCSTYGKFCSRIKIAFVLHAVALGCFIILAVISAFRFFS-- 172 (190)
Q Consensus 95 ~~~f~~Dqv~ayLL~saasAA~~v~~l~~~G~~~~~W~~iC~~~~~FC~~~~~Sv~lsflA~~~~~~~s~iSa~~L~~-- 172 (190)
.+.++++|...+++ +|.+ -+|....+|.+-=+.++ ...+.-++-|+.++++-+.+++|.+-+-+
T Consensus 202 FFF~y~~q~~~~v~-----qAvg-----f~g~~~~G~i~ai~~~~----~~i~v~i~m~i~a~~Ft~~av~~i~~i~kVh 267 (313)
T KOG3088|consen 202 FFFTYFFQIVFCVF-----QAVG-----FPGWGLCGWIPAIDVLS----GNIAVGILMLIGAGLFTLEAVLSIWVLQKVH 267 (313)
T ss_pred HHHHHHHHHHHHHH-----HHHc-----cCCcchhhhhhHhhccC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668888887777 2222 45665566766444443 44444456677778888888888776554
Q ss_pred -ccCCCCCCchhhhhccC
Q 029644 173 -MFDPPSVSSNKEEEEGR 189 (190)
Q Consensus 173 -~~~~~~~~~~~~~~~~~ 189 (190)
.|..-..+.+|.+||-+
T Consensus 268 ~~yRgsG~sf~kaq~e~~ 285 (313)
T KOG3088|consen 268 SYYRGSGASFQKAQEEFT 285 (313)
T ss_pred HHHHhccHhHHHHHHHHH
Confidence 55555666677777644
No 5
>PRK10591 hypothetical protein; Provisional
Probab=44.81 E-value=42 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 029644 142 CSRIKIAFVLHAVALGCFIILAVISAFRFFSMFDPP 177 (190)
Q Consensus 142 C~~~~~Sv~lsflA~~~~~~~s~iSa~~L~~~~~~~ 177 (190)
-..-++++++-|++..|+.--++.-.||--+.++|.
T Consensus 39 l~~~~aai~mif~Gi~lmiPAav~ivWR~a~~lap~ 74 (92)
T PRK10591 39 LSTPTAAILMIFLGVLLMLPAAVVIIWRVAKGLAPQ 74 (92)
T ss_pred ccCchHHHHHHHHHHHHhhHHHHHHHHHHHHHhcHH
Confidence 446789999999999999999999999998877655
No 6
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=42.63 E-value=32 Score=31.99 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=46.6
Q ss_pred cccCCCCCCCccc----CCCCchhHhHHHHHHHHHHHHHHHHHH--HHhccCCCccccceeeecchhHHHHHHHHHHHHH
Q 029644 3 MRGNVSDNSSSSI----NRFPMLKLVDCFLRISAIPLSIAAIWL--TVTNQEDNSDYGKLKFSNLTGLKYMVCISGICAG 76 (190)
Q Consensus 3 ~~~~~~~~~~~~~----~~~~~~~~~~l~LR~~a~~~sl~a~vv--M~t~~qt~~~~~~~~f~~~~af~ylv~an~I~~~ 76 (190)
+|..||++++.-| .+...+-..++.|=+.++++++.+++. .+-|=+.. =+++-.+|.|++...++.|+
T Consensus 323 Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~------l~~~~~~F~~vv~~~~~~~~ 396 (414)
T KOG2662|consen 323 LREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSS------LEEDHYAFKWVVGITFTLCI 396 (414)
T ss_pred HHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch------hccCCChhhhhHHHHHHHHH
Confidence 4666777777664 333344455666666666666655543 22232222 35666899999999999999
Q ss_pred HHHHHH
Q 029644 77 YAFIAA 82 (190)
Q Consensus 77 Ys~lql 82 (190)
+-+.-+
T Consensus 397 ~lf~~i 402 (414)
T KOG2662|consen 397 VLFVVI 402 (414)
T ss_pred HHHHHH
Confidence 877663
No 7
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=37.98 E-value=41 Score=22.12 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCc
Q 029644 151 LHAVALGCFIILAVISAFRFFSMFDPPSVSS 181 (190)
Q Consensus 151 lsflA~~~~~~~s~iSa~~L~~~~~~~~~~~ 181 (190)
+..+.+++.+.+-.++..++.+.||=+..-+
T Consensus 4 ~~iV~i~iv~~lLg~~I~~~~K~ygYkht~d 34 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICTTLKAYGYKHTVD 34 (50)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence 4567778888888999999999986554433
No 8
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=36.57 E-value=1e+02 Score=22.82 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=15.5
Q ss_pred HHHhHHHHHHHHHHHhCCccc-cccc
Q 029644 109 VTSGAAVLEILYLAYNGDQQV-TWSE 133 (190)
Q Consensus 109 ~saasAA~~v~~l~~~G~~~~-~W~~ 133 (190)
+=+++-=++-....|+++... .|..
T Consensus 21 LL~~aCIfAfidfsK~~~~~~~~wRa 46 (92)
T PF05767_consen 21 LLIAACIFAFIDFSKNTKPTDYTWRA 46 (92)
T ss_pred HHHHHHHHHhhhhccCCCCchhHHHH
Confidence 334445567778888885443 5765
No 9
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=32.65 E-value=1.2e+02 Score=22.79 Aligned_cols=49 Identities=24% Similarity=0.256 Sum_probs=35.5
Q ss_pred HhCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029644 123 YNGDQQVTWSETCSTYGKFCSRIKIAFVLHAVALGCFIILAVISAFRFF 171 (190)
Q Consensus 123 ~~G~~~~~W~~iC~~~~~FC~~~~~Sv~lsflA~~~~~~~s~iSa~~L~ 171 (190)
+.++...-|.+-|+.-|-.-+...++.++=+++.+...+..+.-+|+.+
T Consensus 37 ~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~aC 85 (98)
T PF05702_consen 37 REESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRAC 85 (98)
T ss_pred HhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445799999988877777778777777777776666666777754
No 10
>COG3647 Predicted membrane protein [Function unknown]
Probab=29.62 E-value=3.3e+02 Score=22.63 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=23.4
Q ss_pred HHHHHHHhCCccccccccccchhhhhhhHHHHHHHHHHHH
Q 029644 117 EILYLAYNGDQQVTWSETCSTYGKFCSRIKIAFVLHAVAL 156 (190)
Q Consensus 117 ~v~~l~~~G~~~~~W~~iC~~~~~FC~~~~~Sv~lsflA~ 156 (190)
+++.++..|+ +|+. +-|-+|+.-++=-++.|++.
T Consensus 164 giaFLGsQGD---qWDa---QkDmlcdtlGAltal~lla~ 197 (205)
T COG3647 164 GIAFLGSQGD---QWDA---QKDMLCDTLGALTALILLAR 197 (205)
T ss_pred hHHHhhcccc---hhhh---HHhHHHHHHHHHHHHHHHHH
Confidence 4556665555 6875 55689998888777776654
No 11
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=27.71 E-value=68 Score=20.81 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCc
Q 029644 155 ALGCFIILAVISAFRFFSMFDPPSVSS 181 (190)
Q Consensus 155 A~~~~~~~s~iSa~~L~~~~~~~~~~~ 181 (190)
+.....++..+-+|.+..-||||..+-
T Consensus 11 ~i~i~~lL~~~TgyaiYtaFGppSk~L 37 (46)
T PRK13183 11 AITILAILLALTGFGIYTAFGPPSKEL 37 (46)
T ss_pred HHHHHHHHHHHhhheeeeccCCccccc
Confidence 334455666778899999999996543
No 12
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.67 E-value=4.1e+02 Score=22.81 Aligned_cols=156 Identities=15% Similarity=0.077 Sum_probs=89.6
Q ss_pred CCCCCCcccCCCCchhHhHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccc---eeeecchhHHHHHHHHHHHHHHHHHHH
Q 029644 7 VSDNSSSSINRFPMLKLVDCFLRISAIPLSIAAIWLTVTNQEDNSD-YGK---LKFSNLTGLKYMVCISGICAGYAFIAA 82 (190)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~LR~~a~~~sl~a~vvM~t~~qt~~~-~~~---~~f~~~~af~ylv~an~I~~~Ys~lql 82 (190)
+.+-+-....+-+=.+....++|++..+++++-..-+.+.-=..+- -++ .-=.|..+.+|=+++-+.+++=+++-+
T Consensus 7 GagkAGaafD~~tF~rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~fl 86 (233)
T KOG4016|consen 7 GAGKAGAAFDPVTFLRKPQTILRVVSWLFSLIVFGSIVNEGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFL 86 (233)
T ss_pred cccccccccChHHHhcCchhHHHHHHHHHHHhheeeeccccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHH
Confidence 3444555566666688889999999999988766555543211110 011 123467789999999999888888888
Q ss_pred HHHHHh---hhhchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCccccccccc-cchhhhhhhHHHHHHHHHHHHHH
Q 029644 83 VSSWLR---FLVTKAWLFFISDQIVAYLMVTSGAAVLEILYLAYNGDQQVTWSETC-STYGKFCSRIKIAFVLHAVALGC 158 (190)
Q Consensus 83 ~~~~~~---~~~~~~~~~f~~Dqv~ayLL~saasAA~~v~~l~~~G~~~~~W~~iC-~~~~~FC~~~~~Sv~lsflA~~~ 158 (190)
+++.+- .+..-+--..+.|.+++.|-.--== .+-.++.. +|.--- +..+-=-+.+.++|+.+|++++.
T Consensus 87 vlD~~f~qISsv~~RkraVl~Dl~~Salwtflwf--vGFc~l~n------qwqvs~p~~~~~~a~saraaIafsffSils 158 (233)
T KOG4016|consen 87 VLDVYFPQISSVKDRKRAVLADLGVSALWAFLWF--VGFCFLAN------QWQVSKPKENPLGAGSARAAIAFSFFSILS 158 (233)
T ss_pred HHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHH--HHHHHHHH------HhhccCCCCCCcCcchHHHHHHHHHHHHHH
Confidence 888762 1111122224566665544310000 01223322 342111 11111234788899999998888
Q ss_pred HHHHHHHHHHHh
Q 029644 159 FIILAVISAFRF 170 (190)
Q Consensus 159 ~~~~s~iSa~~L 170 (190)
-...+.+.--++
T Consensus 159 W~~~A~lA~qR~ 170 (233)
T KOG4016|consen 159 WGGQAVLAFQRY 170 (233)
T ss_pred HHHHHHHHHHHH
Confidence 877777654443
No 13
>PHA03048 IMV membrane protein; Provisional
Probab=25.17 E-value=2.8e+02 Score=20.58 Aligned_cols=25 Identities=8% Similarity=0.308 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHHHhCCccccccccc
Q 029644 111 SGAAVLEILYLAYNGDQQVTWSETC 135 (190)
Q Consensus 111 aasAA~~v~~l~~~G~~~~~W~~iC 135 (190)
+++.-++-....|+.+....|...|
T Consensus 23 ~~aCIfAfidfsK~k~~~~~wRals 47 (93)
T PHA03048 23 AASCIFAFVDFSKNKATVTVWRALS 47 (93)
T ss_pred HHHHHHhhhhhhcCCCcchhHHHHH
Confidence 3444566678888877777787655
No 14
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=24.29 E-value=2.1e+02 Score=23.33 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=46.9
Q ss_pred ccCCCCCCCcccCCCCchhHhHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeecchhHHHHHHHHHHHHHHHHHHHH
Q 029644 4 RGNVSDNSSSSINRFPMLKLVDCFLRISAIPLSIAAIWLTVTNQEDNSDYGKLKFSNLTGLKYMVCISGICAGYAFIAAV 83 (190)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~LR~~a~~~sl~a~vvM~t~~qt~~~~~~~~f~~~~af~ylv~an~I~~~Ys~lql~ 83 (190)
++...|+.+.--+.+..-+...+.+=+++...+++++++...+.+..+ .......-.++...+...|.+++..
T Consensus 30 ~~~~~~~~r~~a~~ed~~~~~~~~~~~~a~~asl~ai~~~l~~~~~~~-------~~~~~~~~~la~~tv~~sW~~ih~~ 102 (180)
T PF07077_consen 30 WRADPERTRRRARREDEGRWVILLLVLVAAFASLVAIVLLLASAKDLS-------GAAKALHIALALATVVLSWLLIHTV 102 (180)
T ss_pred HcCCHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhCCCCC-------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444555666666777777777777777654321 1133456677777888889999998
Q ss_pred HHHH
Q 029644 84 SSWL 87 (190)
Q Consensus 84 ~~~~ 87 (190)
+...
T Consensus 103 FAl~ 106 (180)
T PF07077_consen 103 FALH 106 (180)
T ss_pred HHHH
Confidence 8763
No 15
>CHL00020 psbN photosystem II protein N
Probab=22.91 E-value=76 Score=20.31 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCc
Q 029644 154 VALGCFIILAVISAFRFFSMFDPPSVSS 181 (190)
Q Consensus 154 lA~~~~~~~s~iSa~~L~~~~~~~~~~~ 181 (190)
++.....++..+-+|.+..-||||+.+-
T Consensus 7 ~~i~i~~ll~~~Tgy~iYtaFGppSk~L 34 (43)
T CHL00020 7 VAIFISGLLVSFTGYALYTAFGQPSKQL 34 (43)
T ss_pred HHHHHHHHHHHhhheeeeeccCCchhcc
Confidence 3444555666778899999999996543
No 16
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=22.42 E-value=1.1e+02 Score=19.49 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCch
Q 029644 157 GCFIILAVISAFRFFSMFDPPSVSSN 182 (190)
Q Consensus 157 ~~~~~~s~iSa~~L~~~~~~~~~~~~ 182 (190)
....++..+-+|.+..-||||+.+-+
T Consensus 10 ~i~~~lv~~Tgy~iYtaFGppSk~Lr 35 (43)
T PF02468_consen 10 FISCLLVSITGYAIYTAFGPPSKELR 35 (43)
T ss_pred HHHHHHHHHHhhhhhheeCCCccccC
Confidence 33444555666888888898875543
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.19 E-value=1.3e+02 Score=22.13 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHh
Q 029644 157 GCFIILAVISAFRF 170 (190)
Q Consensus 157 ~~~~~~s~iSa~~L 170 (190)
++++++|-.|+-.+
T Consensus 15 ~lLlisSevaa~~~ 28 (95)
T PF07172_consen 15 ALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHhhhhhHHh
Confidence 44555555666555
Done!