Query 029644
Match_columns 190
No_of_seqs 107 out of 445
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 02:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 68.3 8.2 0.00028 24.9 4.3 33 149-181 15-49 (54)
2 2jo1_A Phospholemman; FXYD1, N 33.5 47 0.0016 22.5 3.6 38 151-188 21-58 (72)
3 2l8s_A Integrin alpha-1; trans 13.4 2.8E+02 0.0094 17.6 4.8 33 149-181 12-46 (54)
4 2a9h_A Voltage-gated potassium 11.6 2.7E+02 0.0092 20.8 4.3 37 150-186 117-153 (155)
5 2knc_B Integrin beta-3; transm 10.4 68 0.0023 21.8 0.4 28 147-174 11-38 (79)
6 1v54_J Cytochrome C oxidase po 9.2 3.1E+02 0.011 17.5 3.3 36 51-86 19-54 (59)
7 1jb0_X Photosystem I subunit P 7.2 2.6E+02 0.0088 16.1 1.9 14 66-79 18-31 (35)
8 3rko_J NADH-quinone oxidoreduc 7.1 5.3E+02 0.018 20.0 4.4 27 151-177 139-165 (184)
9 2y69_J Cytochrome C oxidase po 6.1 4.5E+02 0.015 17.8 3.0 35 52-86 41-75 (80)
10 2lg4_A Aurelin; antimicrobial 8.1 1.2E+02 0.0042 18.1 0.0 14 132-145 9-22 (40)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.31 E-value=8.2 Score=24.89 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhhcccCCCCCCc
Q 029644 149 FVLHAVALGCFIILAVISAF--RFFSMFDPPSVSS 181 (190)
Q Consensus 149 v~lsflA~~~~~~~s~iSa~--~L~~~~~~~~~~~ 181 (190)
++.|.++.+.+..+.++.-| -.|+|-.+|..+.
T Consensus 15 Ii~svl~GLllL~li~~~LwK~GFFkR~~~~~~e~ 49 (54)
T 2knc_A 15 VLVGVLGGLLLLTILVLAMWKVGFFKRNRPPLEED 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCCCCCcchh
Confidence 34555666666666666666 4678777777664
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=33.45 E-value=47 Score=22.49 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCchhhhhcc
Q 029644 151 LHAVALGCFIILAVISAFRFFSMFDPPSVSSNKEEEEG 188 (190)
Q Consensus 151 lsflA~~~~~~~s~iSa~~L~~~~~~~~~~~~~~~~~~ 188 (190)
+.|.+.++.+-+.++-.-+.--++..+....+..||||
T Consensus 21 LifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~g 58 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEEG 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTTS
T ss_pred hHHHHHHHHHHHHHHHcCccccCCCCCCCCCCCccccc
Confidence 33444444443333333333334555555556677776
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=13.36 E-value=2.8e+02 Score=17.61 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hhcccCCCCCCc
Q 029644 149 FVLHAVALGCFIILAVISAFR--FFSMFDPPSVSS 181 (190)
Q Consensus 149 v~lsflA~~~~~~~s~iSa~~--L~~~~~~~~~~~ 181 (190)
++.|.++.+.+..+.+..-|+ .|+|-.++..++
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~~ 46 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEK 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCCCcchhhH
Confidence 345666666666666666664 566666555443
No 4
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=11.63 E-value=2.7e+02 Score=20.75 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCchhhhh
Q 029644 150 VLHAVALGCFIILAVISAFRFFSMFDPPSVSSNKEEE 186 (190)
Q Consensus 150 ~lsflA~~~~~~~s~iSa~~L~~~~~~~~~~~~~~~~ 186 (190)
...+++...+++....-...+.++...+....++++|
T Consensus 117 ~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~~~r~~e 153 (155)
T 2a9h_A 117 VVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSE 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344444444333333333444444333333333333
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.45 E-value=68 Score=21.82 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 029644 147 IAFVLHAVALGCFIILAVISAFRFFSMF 174 (190)
Q Consensus 147 ~Sv~lsflA~~~~~~~s~iSa~~L~~~~ 174 (190)
.+++++.++.++++-+.++-.|+++...
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777766544
No 6
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=9.25 E-value=3.1e+02 Score=17.47 Aligned_cols=36 Identities=6% Similarity=-0.247 Sum_probs=25.6
Q ss_pred ccccceeeecchhHHHHHHHHHHHHHHHHHHHHHHH
Q 029644 51 SDYGKLKFSNLTGLKYMVCISGICAGYAFIAAVSSW 86 (190)
Q Consensus 51 ~~~~~~~f~~~~af~ylv~an~I~~~Ys~lql~~~~ 86 (190)
+++-+-.=+|.--|.+..+..+++.+|++-.+....
T Consensus 19 pv~lKgg~sd~~Ly~~t~~l~~~g~~~~~y~l~~~~ 54 (59)
T 1v54_J 19 PVHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWAS 54 (59)
T ss_dssp CTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeEeecCcCceeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344333345667788999999999999988876543
No 7
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=7.24 E-value=2.6e+02 Score=16.15 Aligned_cols=14 Identities=29% Similarity=0.550 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 029644 66 YMVCISGICAGYAF 79 (190)
Q Consensus 66 ylv~an~I~~~Ys~ 79 (190)
.++++|-++++|=+
T Consensus 18 llLaINflVAayYF 31 (35)
T 1jb0_X 18 LLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57888988888743
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=7.10 E-value=5.3e+02 Score=20.04 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCC
Q 029644 151 LHAVALGCFIILAVISAFRFFSMFDPP 177 (190)
Q Consensus 151 lsflA~~~~~~~s~iSa~~L~~~~~~~ 177 (190)
+.|-..-.+.+.+++.+..|-|+-.++
T Consensus 139 lpFElaSvlLLvAmIGAIvLarr~~~~ 165 (184)
T 3rko_J 139 LAVELASMLLLAGLVVAFHVGREERAG 165 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 455556667778889999998876443
No 9
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=6.09 E-value=4.5e+02 Score=17.84 Aligned_cols=35 Identities=6% Similarity=-0.258 Sum_probs=25.7
Q ss_pred cccceeeecchhHHHHHHHHHHHHHHHHHHHHHHH
Q 029644 52 DYGKLKFSNLTGLKYMVCISGICAGYAFIAAVSSW 86 (190)
Q Consensus 52 ~~~~~~f~~~~af~ylv~an~I~~~Ys~lql~~~~ 86 (190)
++-+-.=+|.--|.+.++..+++.+|++-.+....
T Consensus 41 V~lKggrsd~~Ly~~t~~l~~~G~~~~ly~l~~~~ 75 (80)
T 2y69_J 41 VHLKGGATDNILYRVTMTLCLGGTLYSLYCLGWAS 75 (80)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeecCccceeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333456667789999999999999988876544
No 10
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=8.10 E-value=1.2e+02 Score=18.11 Aligned_cols=14 Identities=21% Similarity=0.809 Sum_probs=11.3
Q ss_pred cccccchhhhhhhH
Q 029644 132 SETCSTYGKFCSRI 145 (190)
Q Consensus 132 ~~iC~~~~~FC~~~ 145 (190)
+.+|.+|..||+..
T Consensus 9 ~h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 9 GHICESFKSFCKDS 22 (40)
Confidence 35699999999876
Done!