Query 029644
Match_columns 190
No_of_seqs 107 out of 445
Neff 6.1
Searched_HMMs 13730
Date Tue Mar 26 02:55:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029644.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029644hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 8.0 1.5E+02 0.011 20.7 3.4 11 173-183 100-110 (144)
2 d1jb0x_ f.23.20.1 (X:) Subunit 7.2 1.5E+02 0.011 14.8 2.2 14 66-79 12-25 (29)
3 d1fxza2 b.82.1.2 (A:297-470) S 4.4 1.2E+02 0.0085 21.3 0.9 12 1-12 4-15 (174)
4 d1wyha2 g.39.1.3 (A:8-34) Four 4.0 1E+02 0.0073 15.5 0.1 14 177-190 8-21 (27)
5 d1ppje2 f.23.12.1 (E:1-69) Iro 3.4 4.3E+02 0.031 15.8 3.0 16 101-116 32-47 (69)
6 d2jm6b1 f.1.4.1 (B:147-308) EA 3.2 6.7E+02 0.049 16.6 6.0 36 94-139 120-155 (162)
7 d1myna_ g.3.7.4 (A:) Drosomyci 3.2 1.5E+02 0.011 16.4 0.4 6 185-190 24-29 (44)
8 d1pq1a_ f.1.4.1 (A:) Apoptosis 2.7 8.7E+02 0.063 16.8 5.2 35 94-138 161-195 (196)
9 d2np5a1 a.4.1.9 (A:9-77) Trans 2.6 2.9E+02 0.021 15.3 1.4 23 116-138 9-31 (69)
10 d1rrza_ a.7.10.1 (A:) Glycogen 2.6 2.4E+02 0.017 16.9 0.9 15 134-148 45-59 (66)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.05 E-value=1.5e+02 Score=20.68 Aligned_cols=11 Identities=9% Similarity=0.335 Sum_probs=4.9
Q ss_pred ccCCCCCCchh
Q 029644 173 MFDPPSVSSNK 183 (190)
Q Consensus 173 ~~~~~~~~~~~ 183 (190)
-|+|+..-..+
T Consensus 100 v~p~~P~T~~~ 110 (144)
T d1v54d_ 100 VYGPIPHTFEE 110 (144)
T ss_dssp TCCCCCGGGSH
T ss_pred cCCCCCCCCCH
Confidence 34554444433
No 2
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=7.24 E-value=1.5e+02 Score=14.79 Aligned_cols=14 Identities=29% Similarity=0.550 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 029644 66 YMVCISGICAGYAF 79 (190)
Q Consensus 66 ylv~an~I~~~Ys~ 79 (190)
-++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35678888888754
No 3
>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}
Probab=4.45 E-value=1.2e+02 Score=21.28 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=8.0
Q ss_pred CCcccCCCCCCC
Q 029644 1 MKMRGNVSDNSS 12 (190)
Q Consensus 1 ~~~~~~~~~~~~ 12 (190)
||+|.||++.+.
T Consensus 4 ~~~~~ni~~~~~ 15 (174)
T d1fxza2 4 MRLRHNIGQTSS 15 (174)
T ss_dssp CCCEEECSSSSC
T ss_pred eehhhccCCCCC
Confidence 677777766533
No 4
>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.04 E-value=1e+02 Score=15.53 Aligned_cols=14 Identities=36% Similarity=0.216 Sum_probs=10.0
Q ss_pred CCCCchhhhhccCC
Q 029644 177 PSVSSNKEEEEGRT 190 (190)
Q Consensus 177 ~~~~~~~~~~~~~~ 190 (190)
-+..++|+|-+|.+
T Consensus 8 iMPGsrKmey~G~s 21 (27)
T d1wyha2 8 VMPGSRKLEYGGQT 21 (27)
T ss_dssp CCSSSCEECSTTCC
T ss_pred ecCCcccccccCcc
Confidence 35677888888764
No 5
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.41 E-value=4.3e+02 Score=15.77 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhHHHH
Q 029644 101 DQIVAYLMVTSGAAVL 116 (190)
Q Consensus 101 Dqv~ayLL~saasAA~ 116 (190)
...+.||+.++++.+.
T Consensus 32 Rk~fsYl~~g~~~v~~ 47 (69)
T d1ppje2 32 RKGFSYLVTATTTVGV 47 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hceehhhhhhhHHHHH
Confidence 3677888877766644
No 6
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.18 E-value=6.7e+02 Score=16.59 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCccccccccccchh
Q 029644 94 AWLFFISDQIVAYLMVTSGAAVLEILYLAYNGDQQVTWSETCSTYG 139 (190)
Q Consensus 94 ~~~~f~~Dqv~ayLL~saasAA~~v~~l~~~G~~~~~W~~iC~~~~ 139 (190)
..+.-+.|.+.-||.-- -..++.++|- |..+|..|+
T Consensus 120 ~~v~~i~~~~~~fl~~~------l~~WI~~~GG----W~gf~~~f~ 155 (162)
T d2jm6b1 120 SFIEPLAETITDVLVRT------KRDWLVKQRG----WDGFVEFFH 155 (162)
T ss_dssp HHHHHHHHHHHHHHHHH------SHHHHHHTTT----HHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHh------HHHHHHHCCC----HHHHHHHhC
Confidence 34455677777776411 1346777765 777776543
No 7
>d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.17 E-value=1.5e+02 Score=16.43 Aligned_cols=6 Identities=67% Similarity=1.177 Sum_probs=3.2
Q ss_pred hhccCC
Q 029644 185 EEEGRT 190 (190)
Q Consensus 185 ~~~~~~ 190 (190)
+||||+
T Consensus 24 ~eEGr~ 29 (44)
T d1myna_ 24 KEEGRS 29 (44)
T ss_dssp HHHTSS
T ss_pred HHhCcc
Confidence 456653
No 8
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.66 E-value=8.7e+02 Score=16.84 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCccccccccccch
Q 029644 94 AWLFFISDQIVAYLMVTSGAAVLEILYLAYNGDQQVTWSETCSTY 138 (190)
Q Consensus 94 ~~~~f~~Dqv~ayLL~saasAA~~v~~l~~~G~~~~~W~~iC~~~ 138 (190)
..+.-+.|.+.-||-- --..++.++|- |..+|..|
T Consensus 161 ~~v~~I~~~~~~fl~~------~l~~WI~~~GG----W~~f~~~f 195 (196)
T d1pq1a_ 161 VLVSRIASWMATYLND------HLEPWIQENGG----WDTFVDLY 195 (196)
T ss_dssp THHHHHHHHHHHHHHH------HTHHHHHHTTH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------hHHHHHHHcCC----HHHHHHHh
Confidence 3455567777776631 01245666654 66555443
No 9
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=2.63 E-value=2.9e+02 Score=15.32 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCccccccccccch
Q 029644 116 LEILYLAYNGDQQVTWSETCSTY 138 (190)
Q Consensus 116 ~~v~~l~~~G~~~~~W~~iC~~~ 138 (190)
++.-.+.++|-.++...++|...
T Consensus 9 aa~~l~~~~G~~~~ti~~Ia~~a 31 (69)
T d2np5a1 9 ALFDVAAESGLEGASVREVAKRA 31 (69)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHhCccccCHHHHHHHh
Confidence 34556788999999888888543
No 10
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=2.58 E-value=2.4e+02 Score=16.85 Aligned_cols=15 Identities=27% Similarity=0.775 Sum_probs=11.6
Q ss_pred cccchhhhhhhHHHH
Q 029644 134 TCSTYGKFCSRIKIA 148 (190)
Q Consensus 134 iC~~~~~FC~~~~~S 148 (190)
+|..|.-+|.++.-+
T Consensus 45 Fc~Ry~~Yc~q~~qa 59 (66)
T d1rrza_ 45 FCARYAWYCQQMMQA 59 (66)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 688888899887643
Done!