BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029645
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 125/162 (77%)
Query: 13 RLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEAR 72
+L+ + +I+ + D+P PGI+F+D+T+LL D KA+ ++D+ V+RY++ GI+ V G EAR
Sbjct: 14 QLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEAR 73
Query: 73 GFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVID 132
GF+FG +AL +G FVP+RKP KLP E ISE Y LEYGTD+LE+HV AI+PG++ LV+D
Sbjct: 74 GFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVD 133
Query: 133 DLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD 174
DL+ATGGT+ A V+L+ R+G EV + A ++ L ++ G++RL+
Sbjct: 134 DLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLE 175
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 146 bits (368), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 113/176 (64%), Gaps = 3/176 (1%)
Query: 11 DPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMG---ISVVA 67
D LQ + + IR PDFP PG++F+DI+ +L D +F+ + + + I +A
Sbjct: 3 DSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIA 62
Query: 68 GIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGER 127
G+++RGF+FGPS+A +G V +RK KLPG + +Y LEYG LE+ A+EPG+R
Sbjct: 63 GLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQR 122
Query: 128 ALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVE 183
+V+DDL+ATGGT++AA LL R+ AEV+EC +V L ++G+ +L P + L++
Sbjct: 123 VVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQ 178
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 15 QGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFV----DRYRDMGISVVAGIE 70
Q + A+ P+FP GI+F+D + + F+ +D F + + ++ I + G+E
Sbjct: 8 QELKLALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLE 67
Query: 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALV 130
+RGF+FGP++ALA+G FVP+RK KLPGE Y EYG+D E+ AI G ++
Sbjct: 68 SRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVII 127
Query: 131 IDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPR 185
+DD++ATGG+ +AA L+E++ A ++E V+ L ++G+ +L+ P++ L+ +
Sbjct: 128 VDDIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNA-PVFTLLNAQ 181
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 21 IRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSI 80
I+ +PDFP GI F+D++ +L A Y+D+ I+ V GIE+RGF+ G +
Sbjct: 12 IKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIV 71
Query: 81 ALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTD-RLEMHVGAIEPGERALVIDDLVATGG 139
A ++G FV LRK KLPG+V + +EY +E+ + P + L+ DD++ATGG
Sbjct: 72 ANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGG 131
Query: 140 TLSAAVRLLERMGAE 154
TL AA+ L E G +
Sbjct: 132 TLLAAIELCETAGVK 146
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 34 FQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPL 91
F D++++ + K D V+RYR M + + G +ARGF+FGP IA+ +G FV +
Sbjct: 42 FADVSSITESPETLKAIRDFLVERYRTMSPAPTHILGFDARGFLFGPMIAVELGIPFVLM 101
Query: 92 RKPNKLPGEVI-SEAYVLEY---GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRL 147
RK +K G +I SE Y EY + + + G+I R ++IDD++ATGGT + ++L
Sbjct: 102 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQL 161
Query: 148 LERMGAEVVECACVVGLPEVRGQRRL 173
+E GAEVVE ++ +P ++ R+
Sbjct: 162 VEASGAEVVEMVSILTIPFLKAAERI 187
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Query: 34 FQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPL 91
F D++++ + K D V RYR M + + G +ARGF+FGP IA+ + FV +
Sbjct: 41 FADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLM 100
Query: 92 RKPNKLPGEVI-SEAYVLEY---GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRL 147
RK +K G +I SE Y EY + + + G+I G R ++IDD++ATGGT + ++L
Sbjct: 101 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQL 160
Query: 148 LERMGAEVVECACVVGLPEVRGQRRLDG 175
+E A VVE ++ +P ++ ++
Sbjct: 161 VEASDAVVVEMVSILSIPFLKAAEKIHS 188
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 129 LVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161
++DD+++TGGT++ AV+LL+ GA+ + ACV
Sbjct: 209 FIVDDIISTGGTMATAVKLLKEQGAKKIIAACV 241
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 53 IFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEYG 111
+F + + I VV + +G + A + V +RK NK+ G +S YV
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYV-SGS 179
Query: 112 TDRLE-MHVG--AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162
++R++ M + +++ G L+IDD + GGT++ + LL+ A V +V
Sbjct: 180 SNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLV 233
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 53 IFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEYG 111
+F + + I VV + +G + A + V +RK NK+ G +S YV
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYV-SGS 179
Query: 112 TDRLE-MHVG--AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162
++R++ M + +++ G L+IDD + GGT++ + LL+ A V +V
Sbjct: 180 SNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLV 233
>pdb|2WNS|A Chain A, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
pdb|2WNS|B Chain B, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
Length = 205
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 52 DIFVDRYRDMGIS--VVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLE 109
DI ++ GIS V G+ P AL + N++P +I +
Sbjct: 50 DILFQTAQNAGISFDTVCGV--------PYTALPLATVICS---TNQIP-MLIRRKETKD 97
Query: 110 YGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157
YGT RL G I PGE L+I+D+V +G ++ V +L++ G +V +
Sbjct: 98 YGTKRLVE--GTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTD 143
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 115 LEMHVGAIE-PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164
+EM V ++ G++ L++DD+++TGGT++ + LL GA + + V GL
Sbjct: 194 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGL 244
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 115 LEMHVGAIE-PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164
+EM V ++ G++ L++DD+++TGGT++ + LL GA + + V GL
Sbjct: 192 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGL 242
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 27/38 (71%)
Query: 129 LVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166
+++D ++ATGG+ AA+ L++ GA+ ++ C++ PE
Sbjct: 128 IIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPE 165
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162
G + G+R ++IDDLV+TG T A+ L G EVV +V
Sbjct: 360 GEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAGLEVVSIVVLV 402
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 119 VGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161
VG IE G+ A++IDD++ T GT++ A L GA+ V C
Sbjct: 212 VGNIE-GKTAILIDDIIDTAGTITLAANALVENGAKEVYACCT 253
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161
G + G++ ++I+DL++TGG++ AV +R GA+V+ +
Sbjct: 144 GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAI 185
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 128 ALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166
AL++D ++ATGG++ A + LL++ G ++ +V PE
Sbjct: 126 ALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPE 164
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD 174
G E G++ +V++DL++TGG+ V L G EV+ + G+ +L+
Sbjct: 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLE 186
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 126 ERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 165
+R +++DD+ TG TL + ++++GA+ ++ AC+ P
Sbjct: 84 KRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKP 123
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 127 RALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166
RA ++D +ATGG+ S A+ LL+ GA V+ ++ PE
Sbjct: 125 RAFLLDPXLATGGSASLALSLLKERGATGVKLXAILAAPE 164
>pdb|1Y0B|A Chain A, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|B Chain B, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|C Chain C, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|D Chain D, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis
Length = 197
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 52 DIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEY 110
D F R+ GI+ + IE+ G L +G V RK L + + A V +
Sbjct: 43 DEFASRFAKDGITKIVTIESSGIAPAVXTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 102
Query: 111 GTDRLEMHVGA----IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162
T + E + + + L+IDD +A G V ++++ GA + V+
Sbjct: 103 -TKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVI 157
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 18/77 (23%)
Query: 55 VDRYRDMGISVVAGIEARGFVFG-----PSIALAIGAKFVPLRKPNKLPGEVIS------ 103
V+RYRD G+ V+A E + G P+ A ++ A+ R + PG ++S
Sbjct: 116 VERYRDSGLQVIAAFEHEFSLLGLPGERPAAAFSLQAQ----RAAGQFPGWLVSALAQAG 171
Query: 104 ---EAYVLEYGTDRLEM 117
E ++ EYG + E+
Sbjct: 172 TEPEMFLPEYGQRQYEV 188
>pdb|2FXV|A Chain A, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
pdb|2FXV|B Chain B, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
Length = 194
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 52 DIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEY 110
D F R+ GI+ + IE+ G L +G V RK L + + A V +
Sbjct: 40 DEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 99
Query: 111 GTDRLEMHVGA----IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162
T + E + + + L+IDD +A G V ++++ GA + V+
Sbjct: 100 -TKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVI 154
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--------VRGQR 171
G+I+ GER L I D V GGT + VR L E C V L E V G R
Sbjct: 1 GSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW-CGVELDEPLGKNDGAVAGTR 59
Query: 172 RLDGKPLYILVEP 184
+P Y L P
Sbjct: 60 YFQCQPKYGLFAP 72
>pdb|2P1Z|A Chain A, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
pdb|2P1Z|B Chain B, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
Length = 180
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 125 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162
G++ LV++D TG + AV+ L GAEVV A VV
Sbjct: 114 GKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVV 151
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 118 HVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--------VRG 169
G+I+ GER L I D V GGT + VR L E C V L E V G
Sbjct: 28 EAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEW-CGVELDEPLGKNDGAVAG 86
Query: 170 QRRLDGKPLYILVEP 184
R +P Y L P
Sbjct: 87 TRYFQCQPKYGLFAP 101
>pdb|2VFA|A Chain A, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
pdb|2VFA|B Chain B, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
Length = 229
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 125 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161
G+ L+++D++ TG T+ + L+ + ++V+ AC+
Sbjct: 135 GKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVACL 171
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 119 VGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVV 156
+G +E G +++DD+V T GTL A ++L+ GA+ V
Sbjct: 211 IGEVE-GRTCVIMDDMVDTAGTLCKAAQVLKERGAKQV 247
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAI 122
+ V+AG G G IA + F +R K G +++E G +
Sbjct: 69 VEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHG-----------AGNQIE---GRV 114
Query: 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161
G++ ++I+DL++TGG++ A R GA+V+ +
Sbjct: 115 LKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAI 153
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 125 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGK 176
G+ +++D ++ATGGTL A+R + + V+ + PE G +R++ K
Sbjct: 121 GKIVVILDPMLATGGTLEVALREILKHSPLKVKSVHAIAAPE--GLKRIEEK 170
>pdb|3OZF|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZG|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
Length = 250
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 125 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161
G+ L+++D++ TG TL L++ + V AC+
Sbjct: 156 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACL 192
>pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 125 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161
G+ L+++D++ TG TL L++ + V AC+
Sbjct: 137 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACL 173
>pdb|2JBH|A Chain A, Human Phosphoribosyl Transferase Domain Containing 1
pdb|2JBH|B Chain B, Human Phosphoribosyl Transferase Domain Containing 1
Length = 225
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 125 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDG-KPLY 179
G+ L+++D+V TG T+ A + +E+ +++ A ++ V+ R DG +P Y
Sbjct: 134 GKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLL----VKRTSRSDGFRPDY 185
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVV 156
G I+PG+R L +D + G T + A+ +L++ G E
Sbjct: 152 GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAT 188
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAE 154
G I+PG+R L +D + G T + A+ +L++ G E
Sbjct: 49 GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 83
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 119 VGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 159
VG + PGER L+ ATGG AAV + + +GA + A
Sbjct: 33 VGRLSPGERVLIHS---ATGGVGMAAVSIAKMIGARIYTTA 70
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 139 GTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEP 184
GT AVR ++ M C V L VR ++ D P+YI V+P
Sbjct: 82 GTSKEAVRAVQAMNRI---CVLDVDLQGVRSIKKTDLCPIYIFVQP 124
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 115 LEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVV 156
L GAI G+R L I+ G LS A+ LL+ G V
Sbjct: 42 LAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.144 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,530,782
Number of Sequences: 62578
Number of extensions: 223793
Number of successful extensions: 684
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 61
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)