Query 029645
Match_columns 190
No_of_seqs 135 out of 1322
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 16:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1712 Adenine phosphoribosyl 100.0 1.7E-37 3.6E-42 230.4 17.4 178 8-185 2-182 (183)
2 PLN02293 adenine phosphoribosy 100.0 4.5E-36 9.8E-41 234.2 22.6 186 1-186 1-186 (187)
3 PRK02304 adenine phosphoribosy 100.0 7.7E-33 1.7E-37 214.4 20.9 174 13-186 2-175 (175)
4 TIGR01090 apt adenine phosphor 100.0 1.9E-31 4E-36 205.6 19.6 168 17-184 1-169 (169)
5 COG0503 Apt Adenine/guanine ph 100.0 2.8E-30 6.1E-35 200.5 20.0 174 12-185 3-178 (179)
6 PRK09219 xanthine phosphoribos 100.0 1.2E-28 2.6E-33 192.6 18.9 171 12-186 3-180 (189)
7 TIGR01744 XPRTase xanthine pho 100.0 1.2E-28 2.6E-33 193.0 18.6 171 11-186 2-180 (191)
8 PRK12560 adenine phosphoribosy 100.0 8.3E-28 1.8E-32 187.9 20.0 168 15-186 4-178 (187)
9 TIGR01743 purR_Bsub pur operon 100.0 4.6E-27 9.9E-32 191.7 19.2 166 12-186 84-252 (268)
10 PRK09213 pur operon repressor; 100.0 4.8E-27 1E-31 192.1 18.9 166 12-186 86-254 (271)
11 PRK13810 orotate phosphoribosy 100.0 6.3E-27 1.4E-31 182.7 16.5 144 29-187 40-185 (187)
12 PRK08558 adenine phosphoribosy 99.9 1.1E-25 2.3E-30 181.9 18.4 165 13-185 68-238 (238)
13 PRK13809 orotate phosphoribosy 99.9 9.4E-26 2E-30 178.5 16.9 164 10-186 10-180 (206)
14 PRK13812 orotate phosphoribosy 99.9 1.4E-24 3.1E-29 168.1 15.2 139 31-186 29-169 (176)
15 TIGR00336 pyrE orotate phospho 99.9 2.1E-24 4.6E-29 166.9 15.0 142 31-186 22-172 (173)
16 PRK02277 orotate phosphoribosy 99.9 1.4E-23 3E-28 165.8 18.8 148 28-186 49-198 (200)
17 PRK13811 orotate phosphoribosy 99.9 4.7E-24 1E-28 164.5 15.4 139 31-188 28-168 (170)
18 PRK07322 adenine phosphoribosy 99.9 1.7E-23 3.7E-28 162.5 17.3 150 17-167 8-162 (178)
19 PRK00455 pyrE orotate phosphor 99.9 1.1E-23 2.3E-28 166.7 15.9 142 31-187 31-176 (202)
20 PRK05500 bifunctional orotidin 99.9 9.6E-24 2.1E-28 184.5 16.6 148 25-187 303-456 (477)
21 TIGR01367 pyrE_Therm orotate p 99.9 4.3E-23 9.4E-28 161.3 18.1 137 31-186 25-164 (187)
22 COG0461 PyrE Orotate phosphori 99.9 4.7E-23 1E-27 161.2 15.7 161 11-186 4-174 (201)
23 PRK06031 phosphoribosyltransfe 99.9 2.6E-21 5.6E-26 155.7 15.7 164 15-185 40-219 (233)
24 COG0856 Orotate phosphoribosyl 99.9 1.1E-20 2.5E-25 142.5 13.3 167 5-185 16-198 (203)
25 PF00156 Pribosyltran: Phospho 99.8 4E-20 8.8E-25 134.8 11.2 122 39-162 2-125 (125)
26 PLN02238 hypoxanthine phosphor 99.7 1.4E-16 3.1E-21 124.7 15.6 141 37-186 7-160 (189)
27 TIGR01203 HGPRTase hypoxanthin 99.7 2.4E-16 5.2E-21 121.1 15.3 119 41-166 2-125 (166)
28 PRK09162 hypoxanthine-guanine 99.7 1.8E-16 4E-21 123.4 13.4 118 41-166 16-138 (181)
29 PRK09177 xanthine-guanine phos 99.7 4.6E-16 1E-20 118.3 12.2 112 40-166 8-120 (156)
30 COG1040 ComFC Predicted amidop 99.7 1.1E-16 2.4E-21 128.5 8.1 123 41-164 88-223 (225)
31 PRK15423 hypoxanthine phosphor 99.7 1.6E-15 3.5E-20 117.7 12.7 118 39-166 6-133 (178)
32 TIGR00201 comF comF family pro 99.7 4.9E-16 1.1E-20 121.8 9.5 120 42-162 56-189 (190)
33 PRK00934 ribose-phosphate pyro 99.6 6.8E-15 1.5E-19 122.1 13.2 110 63-186 155-265 (285)
34 PRK05205 bifunctional pyrimidi 99.6 1.2E-14 2.6E-19 112.7 13.6 120 39-165 4-136 (176)
35 PTZ00271 hypoxanthine-guanine 99.6 1.7E-14 3.7E-19 114.5 13.8 118 39-166 25-159 (211)
36 PRK07199 phosphoribosylpyropho 99.6 1.1E-14 2.4E-19 121.6 13.3 113 62-186 160-272 (301)
37 COG2236 Predicted phosphoribos 99.6 4.6E-15 9.9E-20 115.7 8.8 113 40-162 5-124 (192)
38 PRK08525 amidophosphoribosyltr 99.6 1.3E-14 2.8E-19 127.0 12.6 137 44-182 258-397 (445)
39 PRK02269 ribose-phosphate pyro 99.6 3.3E-14 7.1E-19 119.7 14.1 113 63-186 166-278 (320)
40 PTZ00149 hypoxanthine phosphor 99.6 2.5E-14 5.4E-19 115.5 12.2 131 36-166 52-191 (241)
41 COG0634 Hpt Hypoxanthine-guani 99.6 5E-14 1.1E-18 107.2 12.5 121 37-167 7-135 (178)
42 COG0462 PrsA Phosphoribosylpyr 99.6 4.6E-14 9.9E-19 117.0 12.1 124 49-186 151-275 (314)
43 PRK01259 ribose-phosphate pyro 99.6 7.5E-14 1.6E-18 117.1 13.5 111 62-185 158-268 (309)
44 PRK11595 DNA utilization prote 99.6 3.6E-14 7.9E-19 114.2 11.2 121 41-163 84-225 (227)
45 PRK04923 ribose-phosphate pyro 99.5 1.8E-13 4E-18 115.0 13.9 123 50-186 155-278 (319)
46 PRK03092 ribose-phosphate pyro 99.5 1.8E-13 3.9E-18 114.5 13.5 126 49-186 136-262 (304)
47 PLN02440 amidophosphoribosyltr 99.5 9.4E-14 2E-18 122.6 11.3 116 45-162 259-377 (479)
48 PRK00553 ribose-phosphate pyro 99.5 5.1E-13 1.1E-17 112.9 14.3 111 63-186 169-283 (332)
49 PRK07349 amidophosphoribosyltr 99.5 1.4E-13 3.1E-18 121.6 11.1 114 45-159 296-411 (500)
50 PRK02458 ribose-phosphate pyro 99.5 3.5E-13 7.5E-18 113.6 12.9 110 63-186 170-279 (323)
51 PRK05793 amidophosphoribosyltr 99.5 2.3E-13 4.9E-18 119.9 12.0 119 45-164 272-392 (469)
52 PRK09246 amidophosphoribosyltr 99.5 1E-13 2.2E-18 123.1 9.8 118 44-163 275-396 (501)
53 TIGR01251 ribP_PPkin ribose-ph 99.5 5.1E-13 1.1E-17 112.1 13.3 124 48-186 147-271 (308)
54 PRK06827 phosphoribosylpyropho 99.5 8.8E-13 1.9E-17 113.1 14.6 116 62-186 207-328 (382)
55 PRK09123 amidophosphoribosyltr 99.5 5.8E-13 1.2E-17 117.5 12.4 113 44-160 278-395 (479)
56 PRK06781 amidophosphoribosyltr 99.5 2.8E-13 6.1E-18 119.2 9.8 115 45-161 267-384 (471)
57 PLN02369 ribose-phosphate pyro 99.5 1.6E-12 3.4E-17 108.7 13.5 110 64-186 153-263 (302)
58 PRK06388 amidophosphoribosyltr 99.5 7.5E-13 1.6E-17 116.5 12.0 113 45-160 275-391 (474)
59 PRK08341 amidophosphoribosyltr 99.4 6.6E-13 1.4E-17 116.0 11.0 114 44-160 254-369 (442)
60 PRK07272 amidophosphoribosyltr 99.4 3.5E-13 7.7E-18 118.8 9.3 114 46-161 270-386 (484)
61 TIGR01134 purF amidophosphorib 99.4 3.2E-13 6.9E-18 118.3 8.5 115 45-161 257-374 (442)
62 PRK07847 amidophosphoribosyltr 99.4 1.1E-12 2.4E-17 116.2 11.6 113 45-160 286-402 (510)
63 PRK02812 ribose-phosphate pyro 99.4 2.7E-12 5.8E-17 108.4 13.1 111 63-186 180-291 (330)
64 PRK07631 amidophosphoribosyltr 99.4 8.2E-13 1.8E-17 116.2 8.3 115 45-161 267-384 (475)
65 COG2065 PyrR Pyrimidine operon 99.4 7.2E-12 1.6E-16 94.2 10.8 120 40-165 5-137 (179)
66 PLN02297 ribose-phosphate pyro 99.4 8.1E-12 1.8E-16 105.1 12.2 107 64-186 185-297 (326)
67 PTZ00145 phosphoribosylpyropho 99.4 1.2E-11 2.7E-16 107.2 13.2 111 63-186 280-396 (439)
68 PF14572 Pribosyl_synth: Phosp 99.2 3.6E-11 7.8E-16 93.0 8.6 121 64-186 5-144 (184)
69 COG0034 PurF Glutamine phospho 99.2 2.9E-11 6.2E-16 104.1 7.9 114 45-161 267-384 (470)
70 PRK00129 upp uracil phosphorib 99.2 2.2E-10 4.8E-15 91.1 11.1 97 65-174 73-171 (209)
71 TIGR01091 upp uracil phosphori 99.2 3E-10 6.4E-15 90.3 10.4 104 64-180 70-179 (207)
72 COG1926 Predicted phosphoribos 99.1 6.4E-10 1.4E-14 87.1 11.3 116 49-164 9-163 (220)
73 KOG1448 Ribose-phosphate pyrop 99.1 7.1E-10 1.5E-14 90.8 9.3 122 37-174 142-263 (316)
74 KOG3367 Hypoxanthine-guanine p 99.0 2.2E-09 4.7E-14 81.5 10.1 125 32-166 27-166 (216)
75 PF15609 PRTase_2: Phosphoribo 98.9 4.9E-08 1.1E-12 75.8 13.5 161 26-188 12-191 (191)
76 KOG0572 Glutamine phosphoribos 98.8 8.3E-09 1.8E-13 87.1 6.5 113 45-159 275-390 (474)
77 PLN02541 uracil phosphoribosyl 98.2 1E-05 2.2E-10 65.8 10.0 49 124-174 156-206 (244)
78 COG0035 Upp Uracil phosphoribo 98.2 5E-06 1.1E-10 65.6 7.4 103 65-182 73-184 (210)
79 PF14681 UPRTase: Uracil phosp 98.0 5.9E-05 1.3E-09 59.9 9.3 103 64-181 69-181 (207)
80 KOG1503 Phosphoribosylpyrophos 97.8 0.00054 1.2E-08 55.2 11.7 160 13-186 130-308 (354)
81 PF15610 PRTase_3: PRTase ComF 96.6 0.03 6.4E-07 46.0 10.3 112 40-155 28-168 (274)
82 KOG1377 Uridine 5'- monophosph 93.9 0.13 2.9E-06 41.7 5.1 148 31-187 62-226 (261)
83 KOG1017 Predicted uracil phosp 91.0 1.4 3E-05 34.9 7.3 61 121-183 185-248 (267)
84 PF13793 Pribosyltran_N: N-ter 88.6 7.2 0.00016 28.0 10.5 75 71-159 7-85 (116)
85 PRK02812 ribose-phosphate pyro 86.8 14 0.00031 31.4 11.3 76 70-159 27-106 (330)
86 PTZ00145 phosphoribosylpyropho 85.5 15 0.00032 32.6 10.9 82 64-159 119-204 (439)
87 PRK00553 ribose-phosphate pyro 84.5 20 0.00043 30.6 11.0 80 66-159 11-94 (332)
88 PRK07199 phosphoribosylpyropho 83.5 21 0.00046 30.0 10.7 75 71-159 9-86 (301)
89 PRK00934 ribose-phosphate pyro 82.3 20 0.00044 29.7 10.1 75 71-159 6-83 (285)
90 PRK02269 ribose-phosphate pyro 81.9 29 0.00062 29.4 11.0 75 71-159 12-90 (320)
91 PRK01259 ribose-phosphate pyro 81.7 27 0.00058 29.5 10.7 74 71-158 7-84 (309)
92 PLN02369 ribose-phosphate pyro 81.6 16 0.00034 30.8 9.2 70 75-158 2-75 (302)
93 PRK04923 ribose-phosphate pyro 80.8 32 0.00069 29.2 10.8 75 71-159 13-91 (319)
94 TIGR01251 ribP_PPkin ribose-ph 80.3 18 0.00038 30.4 9.1 74 71-158 7-85 (308)
95 PRK03092 ribose-phosphate pyro 79.9 21 0.00045 30.0 9.4 70 76-159 1-74 (304)
96 COG0462 PrsA Phosphoribosylpyr 77.7 18 0.00038 30.7 8.2 76 71-160 11-90 (314)
97 PRK02458 ribose-phosphate pyro 71.5 63 0.0014 27.4 11.2 79 67-159 12-94 (323)
98 COG2984 ABC-type uncharacteriz 61.8 30 0.00065 29.4 6.3 74 10-91 40-115 (322)
99 PRK01021 lpxB lipid-A-disaccha 57.1 50 0.0011 30.7 7.3 50 41-90 289-341 (608)
100 COG3535 Uncharacterized conser 56.9 1.3E+02 0.0028 25.9 12.7 105 43-155 77-186 (357)
101 PF01488 Shikimate_DH: Shikima 55.7 28 0.00061 25.2 4.7 39 123-168 10-48 (135)
102 PRK06827 phosphoribosylpyropho 52.9 1.6E+02 0.0034 25.7 11.0 38 121-159 73-128 (382)
103 PRK04195 replication factor C 52.0 1.4E+02 0.0029 26.7 9.2 111 37-154 13-132 (482)
104 PLN02297 ribose-phosphate pyro 51.8 1.5E+02 0.0033 25.3 11.2 82 66-160 18-103 (326)
105 PF04392 ABC_sub_bind: ABC tra 51.1 1.2E+02 0.0026 24.8 8.3 113 36-158 37-166 (294)
106 PF11382 DUF3186: Protein of u 47.9 57 0.0012 27.4 5.9 43 123-165 81-123 (308)
107 PF07931 CPT: Chloramphenicol 44.3 27 0.00058 26.9 3.1 39 124-165 82-121 (174)
108 smart00450 RHOD Rhodanese Homo 44.3 51 0.0011 21.2 4.3 30 123-155 54-83 (100)
109 cd00158 RHOD Rhodanese Homolog 43.2 62 0.0013 20.5 4.4 32 123-157 48-79 (89)
110 PF12646 DUF3783: Domain of un 42.8 73 0.0016 19.7 4.4 35 127-163 2-36 (58)
111 COG0371 GldA Glycerol dehydrog 42.2 58 0.0013 28.2 5.1 41 52-92 74-115 (360)
112 PF02684 LpxB: Lipid-A-disacch 42.1 90 0.002 27.1 6.3 50 41-90 61-113 (373)
113 PF02875 Mur_ligase_C: Mur lig 41.8 50 0.0011 21.9 3.9 35 126-160 12-48 (91)
114 cd01715 ETF_alpha The electron 41.6 75 0.0016 23.8 5.2 43 48-90 69-112 (168)
115 COG0552 FtsY Signal recognitio 41.4 88 0.0019 26.9 5.9 77 9-92 235-318 (340)
116 PLN02331 phosphoribosylglycina 40.8 53 0.0011 26.0 4.4 47 136-182 8-56 (207)
117 PRK13978 ribose-5-phosphate is 39.8 83 0.0018 25.4 5.4 48 41-91 27-74 (228)
118 cd01714 ETF_beta The electron 39.8 72 0.0016 24.9 5.0 42 49-90 95-140 (202)
119 cd01529 4RHOD_Repeats Member o 39.2 65 0.0014 21.4 4.1 30 124-156 55-84 (96)
120 COG4167 SapF ABC-type antimicr 38.0 1.3E+02 0.0028 24.0 6.0 79 7-92 119-207 (267)
121 cd01444 GlpE_ST GlpE sulfurtra 37.7 64 0.0014 21.1 3.9 31 123-156 54-84 (96)
122 COG0763 LpxB Lipid A disacchar 37.7 80 0.0017 27.6 5.2 42 48-90 71-116 (381)
123 COG0784 CheY FOG: CheY-like re 37.5 95 0.0021 21.2 4.9 26 124-152 4-29 (130)
124 PF05728 UPF0227: Uncharacteri 37.2 1.1E+02 0.0023 23.8 5.5 47 43-91 41-87 (187)
125 PRK12342 hypothetical protein; 36.4 1.4E+02 0.0031 24.4 6.3 43 48-90 95-141 (254)
126 COG0299 PurN Folate-dependent 36.0 48 0.0011 26.2 3.4 46 136-181 9-56 (200)
127 COG1537 PelA Predicted RNA-bin 35.9 90 0.002 26.9 5.2 55 126-185 290-350 (352)
128 TIGR01809 Shik-DH-AROM shikima 35.8 82 0.0018 26.0 5.0 37 123-166 123-159 (282)
129 PRK03359 putative electron tra 35.3 77 0.0017 26.0 4.6 43 48-90 98-144 (256)
130 KOG0743 AAA+-type ATPase [Post 34.5 1.3E+02 0.0027 27.0 6.0 86 37-137 200-298 (457)
131 TIGR00215 lpxB lipid-A-disacch 33.8 1.4E+02 0.003 25.7 6.2 43 49-91 76-119 (385)
132 PF01012 ETF: Electron transfe 33.5 64 0.0014 23.9 3.7 42 49-90 77-119 (164)
133 cd08177 MAR Maleylacetate redu 33.0 1.3E+02 0.0028 25.4 5.8 44 49-92 64-108 (337)
134 PF03681 UPF0150: Uncharacteri 32.8 17 0.00036 21.4 0.2 19 133-151 23-41 (48)
135 PRK13584 hisG ATP phosphoribos 32.4 19 0.00041 28.6 0.6 18 132-156 149-166 (204)
136 cd01985 ETF The electron trans 31.1 1.2E+02 0.0025 22.9 4.8 42 49-90 78-120 (181)
137 cd08172 GlyDH-like1 Glycerol d 31.0 1.4E+02 0.003 25.3 5.7 41 51-91 65-106 (347)
138 PRK01686 hisG ATP phosphoribos 30.6 23 0.00049 28.4 0.8 17 133-156 160-176 (215)
139 cd07766 DHQ_Fe-ADH Dehydroquin 30.2 1.4E+02 0.003 25.0 5.5 43 50-92 66-111 (332)
140 PF13685 Fe-ADH_2: Iron-contai 30.0 56 0.0012 26.7 3.0 42 52-93 65-107 (250)
141 cd06336 PBP1_ABC_ligand_bindin 29.6 2.5E+02 0.0053 23.3 7.0 47 41-90 53-99 (347)
142 cd08170 GlyDH Glycerol dehydro 29.5 1.3E+02 0.0029 25.4 5.3 43 49-91 64-107 (351)
143 cd01523 RHOD_Lact_B Member of 29.5 1.2E+02 0.0026 20.1 4.3 28 124-154 60-87 (100)
144 PF01555 N6_N4_Mtase: DNA meth 29.3 43 0.00094 25.7 2.2 21 127-147 192-212 (231)
145 cd08173 Gro1PDH Sn-glycerol-1- 29.3 1.5E+02 0.0033 24.9 5.7 43 49-91 65-108 (339)
146 PRK13583 hisG ATP phosphoribos 28.9 25 0.00055 28.4 0.8 17 133-156 177-193 (228)
147 PRK09423 gldA glycerol dehydro 28.7 1.3E+02 0.0028 25.7 5.2 43 49-91 71-114 (366)
148 PF10865 DUF2703: Domain of un 28.7 47 0.001 24.1 2.1 49 135-183 19-77 (120)
149 PF01634 HisG: ATP phosphoribo 28.6 24 0.00052 26.9 0.6 18 133-157 112-129 (163)
150 cd08550 GlyDH-like Glycerol_de 28.6 1.3E+02 0.0028 25.5 5.1 42 50-91 65-107 (349)
151 cd08171 GlyDH-like2 Glycerol d 28.6 1.5E+02 0.0033 25.0 5.6 43 49-91 65-108 (345)
152 PLN02384 ribose-5-phosphate is 28.0 1.8E+02 0.0039 24.1 5.6 48 42-91 56-103 (264)
153 TIGR01426 MGT glycosyltransfer 27.1 2.2E+02 0.0048 24.1 6.4 34 56-91 86-119 (392)
154 TIGR00236 wecB UDP-N-acetylglu 27.0 2.4E+02 0.0053 23.5 6.6 44 48-91 72-116 (365)
155 COG0040 HisG ATP phosphoribosy 26.8 27 0.0006 29.2 0.6 18 132-156 160-177 (290)
156 PF07726 AAA_3: ATPase family 26.7 2.6E+02 0.0057 20.5 7.3 76 75-153 14-91 (131)
157 PF13207 AAA_17: AAA domain; P 26.5 1.1E+02 0.0025 20.8 3.8 27 65-91 3-30 (121)
158 cd03786 GT1_UDP-GlcNAc_2-Epime 26.3 2.5E+02 0.0054 23.2 6.5 44 48-91 74-118 (363)
159 PF13189 Cytidylate_kin2: Cyti 26.1 52 0.0011 25.0 2.1 20 71-90 10-29 (179)
160 COG0120 RpiA Ribose 5-phosphat 25.7 42 0.00091 27.1 1.5 50 135-186 26-77 (227)
161 TIGR01133 murG undecaprenyldip 25.6 2.4E+02 0.0052 23.1 6.2 39 52-90 80-118 (348)
162 COG0169 AroE Shikimate 5-dehyd 25.6 1.5E+02 0.0032 24.8 4.7 41 123-170 124-164 (283)
163 TIGR00111 pelota probable tran 25.3 1.4E+02 0.003 25.7 4.7 55 126-185 295-350 (351)
164 TIGR00070 hisG ATP phosphoribo 25.2 32 0.00068 26.8 0.7 20 131-157 152-171 (182)
165 PRK00843 egsA NAD(P)-dependent 25.0 1.8E+02 0.0039 24.7 5.3 42 50-91 75-117 (350)
166 cd01518 RHOD_YceA Member of th 24.6 1.8E+02 0.004 19.3 4.5 30 123-155 59-88 (101)
167 COG0588 GpmA Phosphoglycerate 24.4 87 0.0019 25.3 3.0 27 122-152 171-197 (230)
168 PRK08057 cobalt-precorrin-6x r 24.3 2E+02 0.0042 23.5 5.2 36 59-94 187-224 (248)
169 COG0052 RpsB Ribosomal protein 24.0 2.7E+02 0.0058 22.9 5.8 29 63-91 157-185 (252)
170 PF09651 Cas_APE2256: CRISPR-a 24.0 1.8E+02 0.004 21.2 4.6 46 47-92 73-124 (136)
171 PRK14089 ipid-A-disaccharide s 23.9 3E+02 0.0064 23.6 6.5 40 48-90 64-107 (347)
172 PF07728 AAA_5: AAA domain (dy 22.8 2.8E+02 0.006 19.5 6.0 86 65-152 3-92 (139)
173 PRK14027 quinate/shikimate deh 22.8 1.5E+02 0.0033 24.5 4.4 37 123-166 125-161 (283)
174 PRK12749 quinate/shikimate deh 22.7 1.9E+02 0.004 24.0 4.9 36 123-165 122-157 (288)
175 PRK11024 colicin uptake protei 22.6 3E+02 0.0064 20.0 5.5 36 124-159 102-137 (141)
176 cd06367 PBP1_iGluR_NMDA N-term 22.6 1.5E+02 0.0033 24.7 4.5 45 42-90 46-95 (362)
177 PF06032 DUF917: Protein of un 22.5 1.4E+02 0.003 25.7 4.2 43 48-91 78-122 (353)
178 PTZ00428 60S ribosomal protein 22.5 1.5E+02 0.0033 25.9 4.3 30 124-153 139-175 (381)
179 PRK13947 shikimate kinase; Pro 22.3 1E+02 0.0022 22.7 3.0 26 65-90 5-31 (171)
180 PRK06620 hypothetical protein; 22.3 1.7E+02 0.0037 23.0 4.4 30 126-155 86-116 (214)
181 PRK00726 murG undecaprenyldiph 22.2 2.9E+02 0.0064 22.8 6.1 40 52-91 81-120 (357)
182 cd01453 vWA_transcription_fact 22.2 2.2E+02 0.0049 21.6 5.0 31 125-155 108-139 (183)
183 cd01528 RHOD_2 Member of the R 21.8 2.1E+02 0.0046 18.9 4.4 30 124-156 57-86 (101)
184 PRK04940 hypothetical protein; 21.7 3.9E+02 0.0084 20.7 7.6 30 62-92 60-89 (180)
185 cd08551 Fe-ADH iron-containing 21.5 2.4E+02 0.0051 24.0 5.5 35 50-84 68-103 (370)
186 PRK10618 phosphotransfer inter 21.4 4.5E+02 0.0097 25.7 7.7 33 123-158 687-719 (894)
187 TIGR03568 NeuC_NnaA UDP-N-acet 21.0 3.4E+02 0.0074 23.1 6.3 47 45-91 76-123 (365)
188 PF06792 UPF0261: Uncharacteri 20.9 1.8E+02 0.004 25.6 4.6 35 41-75 311-345 (403)
189 cd01519 RHOD_HSP67B2 Member of 20.9 2.1E+02 0.0045 19.0 4.2 31 124-157 65-95 (106)
190 PRK00258 aroE shikimate 5-dehy 20.7 2.4E+02 0.0052 23.0 5.2 36 123-165 121-156 (278)
191 PF03192 DUF257: Pyrococcus pr 20.6 52 0.0011 26.2 1.1 21 127-147 40-60 (210)
192 PRK05329 anaerobic glycerol-3- 20.5 2.4E+02 0.0053 24.8 5.4 58 32-91 188-249 (422)
193 PF13528 Glyco_trans_1_3: Glyc 20.4 3.6E+02 0.0078 21.8 6.2 40 49-91 81-120 (318)
194 PRK00109 Holliday junction res 20.3 3.5E+02 0.0076 19.7 5.7 40 52-91 44-95 (138)
195 PF00595 PDZ: PDZ domain (Also 20.2 2.4E+02 0.0053 17.8 4.3 32 122-153 43-74 (81)
196 TIGR00150 HI0065_YjeE ATPase, 20.1 3.1E+02 0.0066 20.1 5.0 46 42-87 3-49 (133)
No 1
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-37 Score=230.44 Aligned_cols=178 Identities=70% Similarity=1.170 Sum_probs=171.2
Q ss_pred CCCChhHHHHhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhc---CCCCEEEEeCCCChhhHHHHHHHh
Q 029645 8 LRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRD---MGISVVAGIEARGFVFGPSIALAI 84 (190)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~---~~~d~Iv~i~~gG~~~a~~la~~L 84 (190)
..+++.++.++..||..||||++|++|.|+..++.||..++.++..+++++++ .++|+|+|++.|||.++-.+|.++
T Consensus 2 ~~~d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlal 81 (183)
T KOG1712|consen 2 LIADPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALAL 81 (183)
T ss_pred ccccHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHh
Confidence 35678999999999999999999999999999999999999999999999987 579999999999999999999999
Q ss_pred CCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeec
Q 029645 85 GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (190)
Q Consensus 85 ~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~ 164 (190)
|.+++++||..++++...+.+|..+|+++.++++++...+|++|+||||++.||+|+.+|.+++.+.|++++.|++++..
T Consensus 82 G~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL 161 (183)
T KOG1712|consen 82 GAGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIEL 161 (183)
T ss_pred CCCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEc
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCccccccccCCCeEEEEecc
Q 029645 165 PEVRGQRRLDGKPLYILVEPR 185 (190)
Q Consensus 165 ~~~~g~~~l~~~~~~sl~~~~ 185 (190)
++.+|+++|.+.|+++|++.+
T Consensus 162 ~~LkGr~kL~~~pl~~Ll~~~ 182 (183)
T KOG1712|consen 162 PELKGREKLKGKPLFSLLEYQ 182 (183)
T ss_pred cccCCccccCCCccEEEeecC
Confidence 999999999999999999865
No 2
>PLN02293 adenine phosphoribosyltransferase
Probab=100.00 E-value=4.5e-36 Score=234.24 Aligned_cols=186 Identities=83% Similarity=1.325 Sum_probs=170.7
Q ss_pred CccccCCCCCChhHHHHhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHH
Q 029645 1 MFAAENGLRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSI 80 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~l 80 (190)
|+.-.++=.+||++++|++.+|++|+||++|..|.|++.++.+|+.++.+++.+++++.+.++|+|++++.+|+++|..+
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~l 80 (187)
T PLN02293 1 MFAMENGDQGDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPI 80 (187)
T ss_pred CCccccccCCChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHH
Confidence 66777888999999999999999999999999999999999999999999999999998778999999999999999999
Q ss_pred HHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEE
Q 029645 81 ALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (190)
Q Consensus 81 a~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~v 160 (190)
|..|++|++++||.++.++......|..++++..+++..+...+|++||||||+++||+|+.+++++|++.|++++++++
T Consensus 81 A~~Lg~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~ 160 (187)
T PLN02293 81 ALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECAC 160 (187)
T ss_pred HHHHCCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEE
Confidence 99999999999998877777766667667777677776666668999999999999999999999999999999999999
Q ss_pred EeecCCccccccccCCCeEEEEeccc
Q 029645 161 VVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 161 l~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
+++.++..|.+++.++|++||+++++
T Consensus 161 ~~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (187)
T PLN02293 161 VIELPELKGREKLNGKPLFVLVESRG 186 (187)
T ss_pred EEEcCCccHHHHhcCCceEEEEecCC
Confidence 99998888999999999999998764
No 3
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.7e-33 Score=214.42 Aligned_cols=174 Identities=55% Similarity=0.976 Sum_probs=152.0
Q ss_pred hHHHHhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEe
Q 029645 13 RLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (190)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~r 92 (190)
-+|+|++..+..|.||.+++.|.|++.++.+|+.++.+++.+++.+.+.++|+|+|++.||+++|..+|..+++|++.+|
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~r 81 (175)
T PRK02304 2 MLEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVR 81 (175)
T ss_pred hHHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEE
Confidence 37899999999999999999999999999999999999999999997767999999999999999999999999999988
Q ss_pred ccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccc
Q 029645 93 KPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRR 172 (190)
Q Consensus 93 k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~ 172 (190)
|.++.+.......+..+++.+.+.+..+...+|++||||||++|||+|+.++++.|+++|++++++++++++++..|.++
T Consensus 82 k~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~ 161 (175)
T PRK02304 82 KPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREK 161 (175)
T ss_pred cCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhh
Confidence 87655444444445444455566665444578999999999999999999999999999999999999999987668888
Q ss_pred ccCCCeEEEEeccc
Q 029645 173 LDGKPLYILVEPRL 186 (190)
Q Consensus 173 l~~~~~~sl~~~~~ 186 (190)
+.|+|++||++++.
T Consensus 162 l~~~~~~sl~~~~~ 175 (175)
T PRK02304 162 LEGYPVKSLVKFDG 175 (175)
T ss_pred cCCCceEEEEEeCC
Confidence 88999999999863
No 4
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=100.00 E-value=1.9e-31 Score=205.59 Aligned_cols=168 Identities=48% Similarity=0.909 Sum_probs=144.9
Q ss_pred HhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCC
Q 029645 17 ISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNK 96 (190)
Q Consensus 17 l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~ 96 (190)
|+++++.+|+||.|++.|.|++.++.+|+.++.+++.+++++.+.++|+|+|++.||+++|..+|..|++|+..++|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46788999999999999999999999999999999999999987788999999999999999999999999988887765
Q ss_pred CCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccC-
Q 029645 97 LPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDG- 175 (190)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~- 175 (190)
..+......+...++.+.+++......+|++|||||||+|||+|+.++++.|++.|++++++++++++.+..|.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~ 160 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPN 160 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhccC
Confidence 5444444444444554456554444469999999999999999999999999999999999999999988788888864
Q ss_pred CCeEEEEec
Q 029645 176 KPLYILVEP 184 (190)
Q Consensus 176 ~~~~sl~~~ 184 (190)
+|++||+++
T Consensus 161 ~~~~sl~~~ 169 (169)
T TIGR01090 161 VPVFSLLEY 169 (169)
T ss_pred CceEEEEeC
Confidence 899999863
No 5
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.8e-30 Score=200.49 Aligned_cols=174 Identities=45% Similarity=0.791 Sum_probs=159.3
Q ss_pred hhHHHHhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 12 PRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
..++.|.+.++..|+||+++++|.|....+.++......+..+++.+.+.++|.|++++.+|+++|..+|..||+|++++
T Consensus 3 ~~~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 3 ELMELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred hHHHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 46889999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred eccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccc
Q 029645 92 RKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQR 171 (190)
Q Consensus 92 rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~ 171 (190)
||.++.+.......+..+++...++++++.+.+|++||||||++.||+|+.+++++++++|+++++++++++.++..|+.
T Consensus 83 RK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~ 162 (179)
T COG0503 83 RKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRK 162 (179)
T ss_pred EecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccch
Confidence 99988877766666777777667888888878999999999999999999999999999999999999999999988888
Q ss_pred ccc--CCCeEEEEecc
Q 029645 172 RLD--GKPLYILVEPR 185 (190)
Q Consensus 172 ~l~--~~~~~sl~~~~ 185 (190)
++. ++++++|..+.
T Consensus 163 ~l~~~~~~v~~l~~~~ 178 (179)
T COG0503 163 KLEDDGLPVFSLVRIV 178 (179)
T ss_pred hhccCCceEEEEEecc
Confidence 876 48888887654
No 6
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.97 E-value=1.2e-28 Score=192.63 Aligned_cols=171 Identities=25% Similarity=0.348 Sum_probs=142.3
Q ss_pred hhHHHHhhcccccCCCCCCCceEEe-cHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE
Q 029645 12 PRLQGISKAIRVVPDFPIPGIMFQD-ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~ 90 (190)
++.|++++.-|.+|+ +++|.+ +.++..||+.++.+++.+++.+...++|+|+|++.+|+++|..+|..|++|+++
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~ 78 (189)
T PRK09219 3 LLEERILKDGKVLSG----NILKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVF 78 (189)
T ss_pred HHHHHHhcCCEEcCC----CEEEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEE
Confidence 578889999999999 877743 444449999999999999999987789999999999999999999999999999
Q ss_pred EeccCCCC--Cceeeee-eeeec-ccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 91 LRKPNKLP--GEVISEA-YVLEY-GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 91 ~rk~~~~~--~~~~~~~-~~~~~-~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
+||..+.+ +...... +..+. ....++++.+.+.+|++||||||+++||+|+.+++++++++|++++++++++++.+
T Consensus 79 vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~ 158 (189)
T PRK09219 79 AKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSF 158 (189)
T ss_pred EEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccC
Confidence 99987653 3333221 11111 22356777666779999999999999999999999999999999999999999976
Q ss_pred cccccccc--CCCeEEEEeccc
Q 029645 167 VRGQRRLD--GKPLYILVEPRL 186 (190)
Q Consensus 167 ~~g~~~l~--~~~~~sl~~~~~ 186 (190)
..|++++. |+|++||+++++
T Consensus 159 ~~g~~~l~~~g~~~~sl~~~~~ 180 (189)
T PRK09219 159 QDGRKLLEEKGYRVESLARIAS 180 (189)
T ss_pred ccHHHHHHhcCCcEEEEEEeee
Confidence 67777764 899999999876
No 7
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.96 E-value=1.2e-28 Score=193.02 Aligned_cols=171 Identities=23% Similarity=0.322 Sum_probs=142.2
Q ss_pred ChhHHHHhhcccccCCCCCCCceEEe-cHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEE
Q 029645 11 DPRLQGISKAIRVVPDFPIPGIMFQD-ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFV 89 (190)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~ 89 (190)
++++++|.+.-|.+|+ ++++.| ..+...||+.++.+++.+++++.+.++|+|++++.+|+++|..+|..|++|++
T Consensus 2 ~~l~~~~~~~~~~~~~----~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 2 ELLKQKIKEEGVVLPG----GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred hHHHHHHhcCCEEcCC----CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 4788999999999999 877755 22233799999999999999998778999999999999999999999999999
Q ss_pred EEeccCCCCC--cee---eeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeec
Q 029645 90 PLRKPNKLPG--EVI---SEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (190)
Q Consensus 90 ~~rk~~~~~~--~~~---~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~ 164 (190)
++||..+.+. ..+ ..+|.. ++...++++.+.+.+|++||||||++|||+|+.+++++++++|++++++++++++
T Consensus 78 ~vRK~~k~~~~~~~~~~~~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~ 156 (191)
T TIGR01744 78 FARKKKPLTLTDNLLTASVHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEK 156 (191)
T ss_pred EEEeCCCCCCCCcceEEEEEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEe
Confidence 9999865432 111 112222 3344666765556699999999999999999999999999999999999999999
Q ss_pred CCcccccccc--CCCeEEEEeccc
Q 029645 165 PEVRGQRRLD--GKPLYILVEPRL 186 (190)
Q Consensus 165 ~~~~g~~~l~--~~~~~sl~~~~~ 186 (190)
.+..|++.+. |+|++||+++++
T Consensus 157 ~~~~g~~~l~~~gvpv~sL~~~~~ 180 (191)
T TIGR01744 157 SFQNGRQELVELGYRVESLARIQS 180 (191)
T ss_pred cCccHHHHHHhcCCcEEEEEEEee
Confidence 8777888774 799999999876
No 8
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.96 E-value=8.3e-28 Score=187.90 Aligned_cols=168 Identities=26% Similarity=0.367 Sum_probs=138.4
Q ss_pred HHHhhcccccCCCCCCCc--eEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEe
Q 029645 15 QGISKAIRVVPDFPIPGI--MFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (190)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~r 92 (190)
+++.+.+|++++||.+++ .|.|+..++. |..++.+++.+++.+ +.++|+|+|++.+|+++|..+|..+++|+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 4 KNLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred HHHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 457788999999999998 8999999999 999999999999988 668999999999999999999999999999988
Q ss_pred ccCCCCCceeeeeeeeecccceEE--EecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccc
Q 029645 93 KPNKLPGEVISEAYVLEYGTDRLE--MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQ 170 (190)
Q Consensus 93 k~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~ 170 (190)
|.+........ ....+++..++ +..+...+|++||||||+++||+|+.+++++++++|+.++++++++++.+..|.
T Consensus 82 k~~~~~~~~~~--~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~ 159 (187)
T PRK12560 82 WYPYSLSELNY--NVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGR 159 (187)
T ss_pred cCCCcccceeE--EeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchH
Confidence 75532211100 01122222222 222344689999999999999999999999999999999999999999876677
Q ss_pred ccc---cCCCeEEEEeccc
Q 029645 171 RRL---DGKPLYILVEPRL 186 (190)
Q Consensus 171 ~~l---~~~~~~sl~~~~~ 186 (190)
+.+ .|+|++||++++.
T Consensus 160 ~~l~~~~gv~v~sl~~~~~ 178 (187)
T PRK12560 160 KKLFTQTGINVKSLVKIDV 178 (187)
T ss_pred HHHhhccCCcEEEEEEEEE
Confidence 777 4899999999876
No 9
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.95 E-value=4.6e-27 Score=191.73 Aligned_cols=166 Identities=21% Similarity=0.373 Sum_probs=141.3
Q ss_pred hhHHHHhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 12 PRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
+++++|++.-|.+|+ +++ ++..++.||+.++.+++.+++.+.+.++|+|++++.+|+++|..+|..|++|++++
T Consensus 84 ~l~~~l~~~~rilpg----g~~--~~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~viv 157 (268)
T TIGR01743 84 ELCQSLSEPERILPG----GYL--YLTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIV 157 (268)
T ss_pred HHHHHHHHCCCcccC----CeE--EechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEE
Confidence 567778888888888 544 48899999999999999999999877899999999999999999999999999999
Q ss_pred eccCCC-CCceeeeeeeeeccc--ceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcc
Q 029645 92 RKPNKL-PGEVISEAYVLEYGT--DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVR 168 (190)
Q Consensus 92 rk~~~~-~~~~~~~~~~~~~~~--~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~ 168 (190)
||..+. ++.+.+.+|...+.. ..+++++..+.+|++||||||+++||+|+.++++++++.|++++++++++++. .
T Consensus 158 RK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~~--~ 235 (268)
T TIGR01743 158 RKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDNE--G 235 (268)
T ss_pred EECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEECC--C
Confidence 998775 566666666443322 25677777777999999999999999999999999999999999999999996 3
Q ss_pred ccccccCCCeEEEEeccc
Q 029645 169 GQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 169 g~~~l~~~~~~sl~~~~~ 186 (190)
+.+++ +.+++||+++++
T Consensus 236 ~~~~l-~~~~~SL~~~~~ 252 (268)
T TIGR01743 236 VDEKL-VDDYMSLLTLSN 252 (268)
T ss_pred ChHHc-CCCceEEEEEee
Confidence 44555 459999998876
No 10
>PRK09213 pur operon repressor; Provisional
Probab=99.95 E-value=4.8e-27 Score=192.06 Aligned_cols=166 Identities=24% Similarity=0.420 Sum_probs=141.0
Q ss_pred hhHHHHhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 12 PRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
+++++|++..|.+|+ + |+++..++.+|+.++.+++.+++++.+.++|+|++++.+|+++|..+|..|++|++++
T Consensus 86 ~L~~~L~~~~rilpG----g--f~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~viv 159 (271)
T PRK09213 86 ELCERLSEPDRILPG----G--YLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIV 159 (271)
T ss_pred HHHHHHHhCCccCCC----C--eEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 567788888888888 5 4458889999999999999999999877899999999999999999999999999999
Q ss_pred eccCCC-CCceeeeeeeeeccc--ceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcc
Q 029645 92 RKPNKL-PGEVISEAYVLEYGT--DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVR 168 (190)
Q Consensus 92 rk~~~~-~~~~~~~~~~~~~~~--~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~ 168 (190)
||..+. ++.+.+.+|...... ..+++++..+.+|++||||||+++||+|+.++++++++.|++++++++++++.+
T Consensus 160 RK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~~~-- 237 (271)
T PRK09213 160 RRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVETKE-- 237 (271)
T ss_pred EECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEECCC--
Confidence 997765 566666666443221 257777777779999999999999999999999999999999999999999873
Q ss_pred ccccccCCCeEEEEeccc
Q 029645 169 GQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 169 g~~~l~~~~~~sl~~~~~ 186 (190)
+.+++ ..|++||+++++
T Consensus 238 ~~~~l-~~~~~SL~~~~~ 254 (271)
T PRK09213 238 PEERL-VDDYVSLLKLSE 254 (271)
T ss_pred Chhhc-CCceEEEEEEeh
Confidence 44555 469999999886
No 11
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=6.3e-27 Score=182.70 Aligned_cols=144 Identities=26% Similarity=0.383 Sum_probs=126.6
Q ss_pred CCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeee
Q 029645 29 IPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVL 108 (190)
Q Consensus 29 ~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~ 108 (190)
.++..|+|+..++.+|+.++.+++.+++.+.+.++|.|+|++.+|+++|..+|..+++|++++||..+.
T Consensus 40 ~~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~----------- 108 (187)
T PRK13810 40 KKSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKD----------- 108 (187)
T ss_pred CcCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCCc-----------
Confidence 446899999999999999999999999999877899999999999999999999999999999987542
Q ss_pred ecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccccc--CCCeEEEEeccc
Q 029645 109 EYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD--GKPLYILVEPRL 186 (190)
Q Consensus 109 ~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~--~~~~~sl~~~~~ 186 (190)
|+..... .+.+.+|++|+||||++|||+|+.+++++++++|++++++++++++.. .|+++++ |+|++||+++++
T Consensus 109 -~g~~~~~--~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~-g~~~~l~~~gi~~~sl~~~~~ 184 (187)
T PRK13810 109 -YGTGSRF--VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREE-GAEENLKEADVELVPLVSASD 184 (187)
T ss_pred -cCCCceE--EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCc-ChHHHHHHcCCcEEEEEEHHH
Confidence 2322221 255568999999999999999999999999999999999999999974 6777775 899999999876
Q ss_pred c
Q 029645 187 S 187 (190)
Q Consensus 187 ~ 187 (190)
-
T Consensus 185 ~ 185 (187)
T PRK13810 185 L 185 (187)
T ss_pred h
Confidence 4
No 12
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.94 E-value=1.1e-25 Score=181.93 Aligned_cols=165 Identities=22% Similarity=0.345 Sum_probs=132.1
Q ss_pred hHHHHhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEe
Q 029645 13 RLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (190)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~r 92 (190)
+.+.+.+++++.|+ .|+|++.++.||+.++.+++.++..+.+.++|+|++++.+|+++|..+|..||+|++++|
T Consensus 68 ~~~~l~~ri~~~~~------gy~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~R 141 (238)
T PRK08558 68 LEEEVKARIKVDDE------GYVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAK 141 (238)
T ss_pred hHHHHHhhcccCCC------CEEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEE
Confidence 34445556655554 388999999999999999999999998778999999999999999999999999999998
Q ss_pred ccCCCC-Cceeeeeeeeec-cc-ceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccc
Q 029645 93 KPNKLP-GEVISEAYVLEY-GT-DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRG 169 (190)
Q Consensus 93 k~~~~~-~~~~~~~~~~~~-~~-~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g 169 (190)
|.++.. +.++. .|.... +. ..+++.+..+.+|++||||||+++||+|+.++++++++.|++++++++++++.+ .|
T Consensus 142 k~~~~~~~~~v~-~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~-~~ 219 (238)
T PRK08558 142 KSKETGVEKFYE-EYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGE-VG 219 (238)
T ss_pred ecCCCCCcceEE-EeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCc-hH
Confidence 876442 23333 332211 11 245555556679999999999999999999999999999999999999999975 34
Q ss_pred cccc---cCCCeEEEEecc
Q 029645 170 QRRL---DGKPLYILVEPR 185 (190)
Q Consensus 170 ~~~l---~~~~~~sl~~~~ 185 (190)
.+++ .|+|+.|+++++
T Consensus 220 ~~~l~~~~~vpv~sl~~~~ 238 (238)
T PRK08558 220 IDRAREETDAPVDALYTLE 238 (238)
T ss_pred HHHHhHhcCCCEEEEEEeC
Confidence 5655 389999999864
No 13
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=9.4e-26 Score=178.46 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=133.1
Q ss_pred CChhHHHHhhcc-cccCCCC----CCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHh
Q 029645 10 GDPRLQGISKAI-RVVPDFP----IPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI 84 (190)
Q Consensus 10 ~~~~~~~l~~~~-~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L 84 (190)
..++++.|.+.- -....|. ..+..|+|++.++.+|..++.+++.+++.+...++|+|+|++.+|+++|..+|..+
T Consensus 10 ~~~l~~~l~~~gal~~g~F~L~SG~~S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l 89 (206)
T PRK13809 10 RDQAVAILYQIGAIKFGKFILASGEETPIYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKY 89 (206)
T ss_pred HHHHHHHHHHcCCEEECCEEECCcCCCCEEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHh
Confidence 344555555541 1224454 33589999999999999999999999999876689999999999999999999999
Q ss_pred CCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeec
Q 029645 85 GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (190)
Q Consensus 85 ~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~ 164 (190)
++|+.+.||..+.++.. ..+++ .+...+|++|+||||++|||+|+.+++++|++.|++++++++++++
T Consensus 90 ~~p~~~~RK~~K~~G~~-----------~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr 157 (206)
T PRK13809 90 NIPMVLRRKELKNVDPS-----------DAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDR 157 (206)
T ss_pred CCCEEEEeCCCCCCCCc-----------CEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEC
Confidence 99999999876654331 12333 2445689999999999999999999999999999999999999998
Q ss_pred CCcccccccc--CCCeEEEEeccc
Q 029645 165 PEVRGQRRLD--GKPLYILVEPRL 186 (190)
Q Consensus 165 ~~~~g~~~l~--~~~~~sl~~~~~ 186 (190)
. .++.+++. |+|++||+++.+
T Consensus 158 ~-~~~~~~l~~~gi~v~sl~~~~~ 180 (206)
T PRK13809 158 Q-KGACQPLGPQGIKLSSVFTVPD 180 (206)
T ss_pred c-ccHHHHHHhcCCCEEEEEEHHH
Confidence 6 35667663 899999999876
No 14
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=1.4e-24 Score=168.09 Aligned_cols=139 Identities=24% Similarity=0.323 Sum_probs=119.4
Q ss_pred CceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeec
Q 029645 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEY 110 (190)
Q Consensus 31 ~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~ 110 (190)
+..|+|...+..+|+.++.+++.+++.+.+ .|+|+|++.+|+++|..+|..+++|++++||.++. |
T Consensus 29 S~~yid~~~~~~~p~~~~~i~~~l~~~i~~--~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~------------y 94 (176)
T PRK13812 29 SEYYVDKYLFETDPDCLRLIAEAFADRIDE--DTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKE------------Y 94 (176)
T ss_pred CCEEEeCeeccCCHHHHHHHHHHHHHHhcc--CCEEEEeecchHHHHHHHHHHHCCCEEEEeccCCc------------C
Confidence 479999999999999999999999999854 38999999999999999999999999999987642 2
Q ss_pred ccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccccc--CCCeEEEEeccc
Q 029645 111 GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD--GKPLYILVEPRL 186 (190)
Q Consensus 111 ~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~--~~~~~sl~~~~~ 186 (190)
+..... .+.+.+|++|+||||++|||+|+.+++++|++.|++++++++++++. ..|+++++ |+|++||+++++
T Consensus 95 g~~~~~--~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~-~~~~~~l~~~g~~v~sL~~~~~ 169 (176)
T PRK13812 95 GTGNRI--EGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDRE-EGARENLADHDVELEALVTASD 169 (176)
T ss_pred CCCCeE--EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECC-cchHHHHHhcCCcEEEEEeHHH
Confidence 222111 14455899999999999999999999999999999999999999996 35666663 899999999876
No 15
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.92 E-value=2.1e-24 Score=166.87 Aligned_cols=142 Identities=17% Similarity=0.275 Sum_probs=121.9
Q ss_pred CceEEecHhHhcCHHHHHHHHHHHHHHhhc-CCCCEEEEeCCCChhhHHHHHHHhCCC-----EEEEeccCCCCCceeee
Q 029645 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRD-MGISVVAGIEARGFVFGPSIALAIGAK-----FVPLRKPNKLPGEVISE 104 (190)
Q Consensus 31 ~~~~~d~~~~~~~~~~~~~~~~~la~~i~~-~~~d~Iv~i~~gG~~~a~~la~~L~~p-----~~~~rk~~~~~~~~~~~ 104 (190)
+..|+|++.++.+|+..+.+++.+++.+.+ .++|+|+|++.+|+++|..+|..+++| ++++||..+..
T Consensus 22 s~~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~------ 95 (173)
T TIGR00336 22 SPYYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDH------ 95 (173)
T ss_pred CCEEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccC------
Confidence 579999999999999999999999998876 579999999999999999999999999 88887765421
Q ss_pred eeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccccc---CCCeEEE
Q 029645 105 AYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD---GKPLYIL 181 (190)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~---~~~~~sl 181 (190)
+..... .+...+|++||||||+++||+|+.++++.|+++|++++++++++++.+..|.+++. |+|++||
T Consensus 96 ------g~~~~~--~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~~sl 167 (173)
T TIGR00336 96 ------GEGGNI--EGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVISL 167 (173)
T ss_pred ------CCCCce--ecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeEEEE
Confidence 111111 13456899999999999999999999999999999999999999998656777773 8999999
Q ss_pred Eeccc
Q 029645 182 VEPRL 186 (190)
Q Consensus 182 ~~~~~ 186 (190)
+++++
T Consensus 168 ~~~~~ 172 (173)
T TIGR00336 168 ITLKD 172 (173)
T ss_pred EeHhh
Confidence 99865
No 16
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.92 E-value=1.4e-23 Score=165.78 Aligned_cols=148 Identities=22% Similarity=0.346 Sum_probs=119.1
Q ss_pred CCCCceEEecHhHhcCHHHHHHHHHHHHHHhh--cCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeee
Q 029645 28 PIPGIMFQDITTLLLDHKAFKDTVDIFVDRYR--DMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEA 105 (190)
Q Consensus 28 ~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~--~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~ 105 (190)
|++++.|+|+..+..+|+.++.+++.|++.+. ..++|+|+|++.+|+++|..+|..|++|+...++.+..++..
T Consensus 49 ~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~---- 124 (200)
T PRK02277 49 PAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEG---- 124 (200)
T ss_pred CCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEeccccccccc----
Confidence 56789999999999999999999999999874 347899999999999999999999999987766443211110
Q ss_pred eeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEecc
Q 029645 106 YVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPR 185 (190)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~ 185 (190)
......+.. .....+|++||||||++|||+|+.++++.|++.|+++++++++++++ |.+.+.|+|++||+++.
T Consensus 125 ---~~~~~~~~~-~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~---g~~~~~~vpv~sl~~~~ 197 (200)
T PRK02277 125 ---EKKTGSFSR-NFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKS---GIDEIDGVPVYSLIRVV 197 (200)
T ss_pred ---ccccceecc-ccccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECc---chhhhcCCCeEEEEEEE
Confidence 000011110 01235899999999999999999999999999999999999999985 55677899999999875
Q ss_pred c
Q 029645 186 L 186 (190)
Q Consensus 186 ~ 186 (190)
.
T Consensus 198 ~ 198 (200)
T PRK02277 198 R 198 (200)
T ss_pred e
Confidence 3
No 17
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=4.7e-24 Score=164.45 Aligned_cols=139 Identities=27% Similarity=0.400 Sum_probs=117.6
Q ss_pred CceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeec
Q 029645 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEY 110 (190)
Q Consensus 31 ~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~ 110 (190)
+..|+|+..++.+|+.++.+++.+++.+ ++|+|++++.+|+++|..+|..+|+|++++||.++..
T Consensus 28 s~~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~~------------ 92 (170)
T PRK13811 28 SRYYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDH------------ 92 (170)
T ss_pred CCEEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCCC------------
Confidence 4688999999999999999999887653 6899999999999999999999999999999875422
Q ss_pred ccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccccc--CCCeEEEEeccccc
Q 029645 111 GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD--GKPLYILVEPRLSV 188 (190)
Q Consensus 111 ~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~--~~~~~sl~~~~~~~ 188 (190)
+...... +. .+|++|+||||++|||+|+.+++++|+++|++++++++++++.+ .+.++++ |+|++||+++++-.
T Consensus 93 g~~~~~~--g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~-g~~~~l~~~gv~~~sl~~~~~~~ 168 (170)
T PRK13811 93 GKAGLII--GD-VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQ-GAEELLAELGITLTPLVRVSELL 168 (170)
T ss_pred CCcceEE--cc-cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCc-cHHHHHHhcCCcEEEEeEHHHHh
Confidence 2112221 33 48999999999999999999999999999999999999999974 4566653 89999999988744
No 18
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.7e-23 Score=162.50 Aligned_cols=150 Identities=24% Similarity=0.369 Sum_probs=119.5
Q ss_pred HhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCC
Q 029645 17 ISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNK 96 (190)
Q Consensus 17 l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~ 96 (190)
+.+..|+.|+|+.++..+++..+++.+|..++.+++.+++.+.. ++|+|++++.+|+++|..+|..+++|++.++|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 45677999999999989999999999999999999999999975 78999999999999999999999999988876543
Q ss_pred C--CCceeeeeeeeecccc-eEEEecCC--CCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCc
Q 029645 97 L--PGEVISEAYVLEYGTD-RLEMHVGA--IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEV 167 (190)
Q Consensus 97 ~--~~~~~~~~~~~~~~~~-~~~l~~~~--~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~ 167 (190)
. ........+....+.. .+.+.... ..+|++||||||+++||+|+.++++.|+++|+++++++++++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~ 162 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDA 162 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCC
Confidence 2 1111111111112222 22222111 2479999999999999999999999999999999999999998753
No 19
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.92 E-value=1.1e-23 Score=166.73 Aligned_cols=142 Identities=29% Similarity=0.376 Sum_probs=120.1
Q ss_pred CceEEecHhHhcCHHHHHHHHHHHHHHhhcC--CCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeee
Q 029645 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVL 108 (190)
Q Consensus 31 ~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~ 108 (190)
+..|+|+..++.+|+.++.+++.+++++.+. ++|+|++++.+|+++|..+|..|++|+++++|..+..+.
T Consensus 31 s~~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~-------- 102 (202)
T PRK00455 31 SPYYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGE-------- 102 (202)
T ss_pred CCeeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCC--------
Confidence 3789999999999999999999999999865 899999999999999999999999999998875432111
Q ss_pred ecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccccc--CCCeEEEEeccc
Q 029645 109 EYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD--GKPLYILVEPRL 186 (190)
Q Consensus 109 ~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~--~~~~~sl~~~~~ 186 (190)
...++ ....+|++||||||+++||+|+.++++.|++.|++++++++++++. ..+++.++ |+|++||+++++
T Consensus 103 ---~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~-~~~~~~~~~~g~~~~sl~~~~~ 175 (202)
T PRK00455 103 ---GGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ-SAAQEVFADAGVPLISLITLDD 175 (202)
T ss_pred ---CceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECc-chHHHHHHhcCCcEEEEeeHHH
Confidence 11122 2234799999999999999999999999999999999999999996 34555553 899999999876
Q ss_pred c
Q 029645 187 S 187 (190)
Q Consensus 187 ~ 187 (190)
.
T Consensus 176 ~ 176 (202)
T PRK00455 176 L 176 (202)
T ss_pred H
Confidence 4
No 20
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.91 E-value=9.6e-24 Score=184.53 Aligned_cols=148 Identities=20% Similarity=0.345 Sum_probs=128.4
Q ss_pred CCCC----CCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCc
Q 029645 25 PDFP----IPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGE 100 (190)
Q Consensus 25 ~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~ 100 (190)
.+|. ..+..|+|+..++.+|..++.+++.+++.+.+.++|.|+|++.||+++|..+|..+++|++++||..+.
T Consensus 303 G~F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~--- 379 (477)
T PRK05500 303 GEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKA--- 379 (477)
T ss_pred CcEEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCc---
Confidence 5565 334899999999999999999999999999877899999999999999999999999999999987653
Q ss_pred eeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccccc--CCCe
Q 029645 101 VISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD--GKPL 178 (190)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~--~~~~ 178 (190)
+|+..+ .++.+.+|++|+|||||+|||+|+.++++.|++.|++++++++++++.+ .++++++ |+|+
T Consensus 380 ---------~G~~~~--ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~-g~~~~L~~~gv~~ 447 (477)
T PRK05500 380 ---------HGTRRL--IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQ-GVKDKLQSHGYQA 447 (477)
T ss_pred ---------cCCCce--EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCc-chHHHHHhcCCCE
Confidence 232222 2355678999999999999999999999999999999999999999975 5677775 7999
Q ss_pred EEEEecccc
Q 029645 179 YILVEPRLS 187 (190)
Q Consensus 179 ~sl~~~~~~ 187 (190)
+||+++++.
T Consensus 448 ~Sl~tl~el 456 (477)
T PRK05500 448 YSVLTISEI 456 (477)
T ss_pred EEEEEHHHH
Confidence 999999873
No 21
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.91 E-value=4.3e-23 Score=161.30 Aligned_cols=137 Identities=26% Similarity=0.466 Sum_probs=116.6
Q ss_pred CceEEecHhHhcCHHHHHHHHHHHHHHhhcC--CCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeee
Q 029645 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVL 108 (190)
Q Consensus 31 ~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~ 108 (190)
+..|+|++.++.+|+.++.+++.+++++... ++|+|++++.||+++|..+|..|++|+++.+|...
T Consensus 25 s~~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~~------------ 92 (187)
T TIGR01367 25 SPYFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREGG------------ 92 (187)
T ss_pred CCeeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeCC------------
Confidence 4799999999999999999999999999764 78999999999999999999999999988765431
Q ss_pred ecccceEEEecC-CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 109 EYGTDRLEMHVG-AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 109 ~~~~~~~~l~~~-~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
.+.+..+ ...+|++|||||||++||+|+.++++.|++.|++++++++++++.+ +.....|+|++||++++.
T Consensus 93 -----~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~--~~~~~~~~~~~sl~~~~~ 164 (187)
T TIGR01367 93 -----GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQ--GGKPDSGVPLMSLKELEF 164 (187)
T ss_pred -----cEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcC--CCcccCCCCEEEEEEEec
Confidence 0111112 2358999999999999999999999999999999999999999873 444556899999999843
No 22
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.91 E-value=4.7e-23 Score=161.21 Aligned_cols=161 Identities=24% Similarity=0.309 Sum_probs=130.0
Q ss_pred ChhHHHHhh-cccccCCCC----CCCceEEecHhHhcCHHHHHHHHHHHHHHhhcC-CCCEEEEeCCCChhhHHHHHHHh
Q 029645 11 DPRLQGISK-AIRVVPDFP----IPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAI 84 (190)
Q Consensus 11 ~~~~~~l~~-~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~-~~d~Iv~i~~gG~~~a~~la~~L 84 (190)
.++.+.+.+ ..-..++|+ ..+..|+|......+|+.++.++..++..+.+. ++|+|+|++.+|+++|+.+|..|
T Consensus 4 ~~~~~~l~~~~a~~fG~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l 83 (201)
T COG0461 4 RELAELLLEKGALKFGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALAL 83 (201)
T ss_pred HHHHHHHHHcCCeecCceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHh
Confidence 345566666 334457777 335899999999999999999999999988874 89999999999999999999999
Q ss_pred C-CC-EEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029645 85 G-AK-FVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (190)
Q Consensus 85 ~-~p-~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~ 162 (190)
+ .| +++.||..+.++.. +.++ +...+|++|+|||||+|||+|+.+++++|+++|+.+.++++++
T Consensus 84 ~~~~~~~~~Rke~K~hG~~-----------~~ie---G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~iv 149 (201)
T COG0461 84 AHLPPMAYVRKEAKDHGTG-----------GLIE---GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIV 149 (201)
T ss_pred ccCCcEEEEeceeccCCCc-----------ceeE---ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEE
Confidence 4 22 67778765533221 1222 3334899999999999999999999999999999999999999
Q ss_pred ecCCcccccccc--CCCeEEEEeccc
Q 029645 163 GLPEVRGQRRLD--GKPLYILVEPRL 186 (190)
Q Consensus 163 ~~~~~~g~~~l~--~~~~~sl~~~~~ 186 (190)
++. +.+.+.+. |++++||+++++
T Consensus 150 DR~-~~~~~~~~~~g~~~~sl~tl~d 174 (201)
T COG0461 150 DRQ-SGAKEVLKEYGVKLVSLVTLSD 174 (201)
T ss_pred ecc-hhHHHHHHhcCCceEEEeeHHH
Confidence 996 35556664 899999999987
No 23
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.88 E-value=2.6e-21 Score=155.66 Aligned_cols=164 Identities=22% Similarity=0.360 Sum_probs=118.6
Q ss_pred HHHhhcccccCCCCCCCceEEecHhHhcCH---HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCC-EEE
Q 029645 15 QGISKAIRVVPDFPIPGIMFQDITTLLLDH---KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAK-FVP 90 (190)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p-~~~ 90 (190)
..|...+|.+|++| .|+..++.++ +.++.+++.|++++...++|+|+|++.+|+++|..+|+.|+++ ++.
T Consensus 40 ~~l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vp 113 (233)
T PRK06031 40 RQLLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVP 113 (233)
T ss_pred CEeccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceE
Confidence 45677788888866 4688888887 5556799999999976689999999999999999999999974 455
Q ss_pred EeccCCCCC--cee--eeeeeeecccceEEEecC--CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeec
Q 029645 91 LRKPNKLPG--EVI--SEAYVLEYGTDRLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (190)
Q Consensus 91 ~rk~~~~~~--~~~--~~~~~~~~~~~~~~l~~~--~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~ 164 (190)
+++.++... ... ..++........+.+... ...+|++||||||+++||+|+.+++++|+++|++++++++++.+
T Consensus 114 l~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~ 193 (233)
T PRK06031 114 LGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQ 193 (233)
T ss_pred EEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEEc
Confidence 544332210 000 000110011123444322 23589999999999999999999999999999999999999999
Q ss_pred CCcccccccc--C----CCeEEEEecc
Q 029645 165 PEVRGQRRLD--G----KPLYILVEPR 185 (190)
Q Consensus 165 ~~~~g~~~l~--~----~~~~sl~~~~ 185 (190)
++ .+++++. + .++.++..++
T Consensus 194 g~-~~~~~l~~~~~~~~~~~~~~~~~p 219 (233)
T PRK06031 194 SE-RWRESLAAAGPQWPARVVGVFATP 219 (233)
T ss_pred cc-cHHHHHHhcCCCcccceEEEeecc
Confidence 75 4556654 2 5666666654
No 24
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.86 E-value=1.1e-20 Score=142.50 Aligned_cols=167 Identities=20% Similarity=0.307 Sum_probs=126.7
Q ss_pred cCCCCCChhHHHHhh----------cccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHH-hhc--CCCCEEEEeCC
Q 029645 5 ENGLRGDPRLQGISK----------AIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDR-YRD--MGISVVAGIEA 71 (190)
Q Consensus 5 ~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~-i~~--~~~d~Iv~i~~ 71 (190)
.+||-..+-+++|+= +......-|.|-+.++||+.+-..+.-++.++..|++. +.. .++|+|+||+.
T Consensus 16 ~~Glt~gEIAdELNvSreTa~WL~~r~~~~~~~~~p~Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~ 95 (203)
T COG0856 16 SKGLTTGEIADELNVSRETATWLLTRAFKKESVPAPVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAI 95 (203)
T ss_pred HCCCcHHHhhhhhhhhHHHHHHHHhhhhhccCCCCCcceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEee
Confidence 356666666666542 11122334445689999999999999999999999994 332 37899999999
Q ss_pred CChhhHHHHHHHhCCCEEEE--eccCCCCCceeeeeeeeecccceEEEecC-CCCCCCEEEEEcCccCchHHHHHHHHHH
Q 029645 72 RGFVFGPSIALAIGAKFVPL--RKPNKLPGEVISEAYVLEYGTDRLEMHVG-AIEPGERALVIDDLVATGGTLSAAVRLL 148 (190)
Q Consensus 72 gG~~~a~~la~~L~~p~~~~--rk~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~gk~VLlVDDvvtTG~Tl~~~~~~L 148 (190)
.|+|+|+++|..||..+..- ||.++..+. +. .-.++.+ .-..||+++||||++|||.|+.++++.|
T Consensus 96 sGvPlAtmvA~elg~elaiY~PrK~~~de~~----------~~-~G~iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~l 164 (203)
T COG0856 96 SGVPLATMVAYELGKELAIYHPRKHRKDEGA----------GK-GGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQL 164 (203)
T ss_pred cCccHHHHHHHHhCCceEEEecccccccccC----------Cc-CceeecccccccCceEEEEecccccChhHHHHHHHH
Confidence 99999999999999988543 343332111 00 0112222 2369999999999999999999999999
Q ss_pred HHcCCeEEEEEEEeecCCccccccccCCCeEEEEecc
Q 029645 149 ERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPR 185 (190)
Q Consensus 149 ~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~ 185 (190)
++.|++.+.|.+|+++. |...++|+|+.||+.+.
T Consensus 165 ke~g~kpv~v~VL~dK~---G~dei~gvPi~sLlri~ 198 (203)
T COG0856 165 KEEGGKPVLVVVLADKK---GVDEIEGVPVESLLRIL 198 (203)
T ss_pred HHcCCCcEEEEEEEccC---CcccccCcchHHhheee
Confidence 99999999999999984 77889999999998753
No 25
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.83 E-value=4e-20 Score=134.75 Aligned_cols=122 Identities=26% Similarity=0.418 Sum_probs=91.6
Q ss_pred hHhcCHHHHHHHHHHHHHHhhcC--CCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEE
Q 029645 39 TLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLE 116 (190)
Q Consensus 39 ~~~~~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 116 (190)
+++.+++.++.+++.+++++.+. ++|.|+|+++||+++|..+|..++.|+....+....... . .............
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPG-S-DKTSREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESE-E-EEEEEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeeccccc-c-hhhhhccCceEEe
Confidence 35678999999999999999865 567799999999999999999999998775443211000 0 0000011111222
Q ss_pred EecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029645 117 MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (190)
Q Consensus 117 l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~ 162 (190)
.......+|++||||||+++||+|+.++++.|++.|++++++++++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 2224446999999999999999999999999999999999999885
No 26
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.74 E-value=1.4e-16 Score=124.75 Aligned_cols=141 Identities=22% Similarity=0.238 Sum_probs=100.9
Q ss_pred cHhHhcCHHHHHHHHHHHHHHhhcC---CCCEEEEeCCCChhhHHHHHHHhCC---CEE--EEeccCCCCCceeeeeeee
Q 029645 37 ITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGA---KFV--PLRKPNKLPGEVISEAYVL 108 (190)
Q Consensus 37 ~~~~~~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~a~~la~~L~~---p~~--~~rk~~~~~~~~~~~~~~~ 108 (190)
+..++.+++.++..++.+|.++.+. .+++|+|+.+||+++|..+++.|+. |+. +++..+...+.
T Consensus 7 ~~~~lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~-------- 78 (189)
T PLN02238 7 IEKVLWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGT-------- 78 (189)
T ss_pred ccEEEcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCc--------
Confidence 3455678888888888888887642 4589999999999999999999998 653 34432210000
Q ss_pred ecccceEEEec---CCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccc--cccccCCCeEEEEe
Q 029645 109 EYGTDRLEMHV---GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRG--QRRLDGKPLYILVE 183 (190)
Q Consensus 109 ~~~~~~~~l~~---~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g--~~~l~~~~~~sl~~ 183 (190)
..+....+.. ....+|++|||||||+|||.|+.++++.|++.|++.+.+++|++++...- .+..++.+=+..++
T Consensus 79 -~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~~r~~~~~~~~~~~d~~G~~ 157 (189)
T PLN02238 79 -ESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRARRKVKYELVGDGKEYVGFE 157 (189)
T ss_pred -cccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCccccCCccCCCCCceEEEEe
Confidence 0111222222 12369999999999999999999999999999999999999999974211 11223557777777
Q ss_pred ccc
Q 029645 184 PRL 186 (190)
Q Consensus 184 ~~~ 186 (190)
++.
T Consensus 158 ipd 160 (189)
T PLN02238 158 CPD 160 (189)
T ss_pred cCC
Confidence 766
No 27
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.73 E-value=2.4e-16 Score=121.09 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=86.0
Q ss_pred hcCHHHHHHHHHHHHHHhhcC---CCCEEEEeCCCChhhHHHHHHHhCCCEE--EEeccCCCCCceeeeeeeeecccceE
Q 029645 41 LLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDRL 115 (190)
Q Consensus 41 ~~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~a~~la~~L~~p~~--~~rk~~~~~~~~~~~~~~~~~~~~~~ 115 (190)
+.+++.++..++.|+.++.+. +.++|+||.+||+.+|..+++.|+.|.. ++.-..-.... ...+....
T Consensus 2 lis~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~-------~~~~~~~~ 74 (166)
T TIGR01203 2 LIPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGM-------QSSGDVKI 74 (166)
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCC-------cccCceEE
Confidence 356777888888888877543 4679999999999999999999998743 23211000000 00011111
Q ss_pred EEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 116 EMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 116 ~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
........+|++|||||||++||+|+.++++.|++.|++.+.++++++++.
T Consensus 75 ~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~ 125 (166)
T TIGR01203 75 LKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPS 125 (166)
T ss_pred ecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCc
Confidence 111123358999999999999999999999999999999999999999963
No 28
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.71 E-value=1.8e-16 Score=123.37 Aligned_cols=118 Identities=20% Similarity=0.203 Sum_probs=85.6
Q ss_pred hcCHHHHHHHHHHHHHHhhc---CCCCEEEEeCCCChhhHHHHHHHhCCCEE--EEeccCCCCCceeeeeeeeecccceE
Q 029645 41 LLDHKAFKDTVDIFVDRYRD---MGISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDRL 115 (190)
Q Consensus 41 ~~~~~~~~~~~~~la~~i~~---~~~d~Iv~i~~gG~~~a~~la~~L~~p~~--~~rk~~~~~~~~~~~~~~~~~~~~~~ 115 (190)
+.+++.+....+.++.++.+ .+.++|+++..+|+.+|..+|+.|++|+. .+++.+...... ...-.+
T Consensus 16 ~~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~--------~~~~~~ 87 (181)
T PRK09162 16 LVSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETT--------GGELVW 87 (181)
T ss_pred eecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCcc--------CCceeE
Confidence 34666777777777776654 24579999999999999999999999863 333222111000 000112
Q ss_pred EEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 116 EMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 116 ~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
.+......+|++|||||||+|||+|+.++++.|++.|++.+.++++++++.
T Consensus 88 ~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~~ 138 (181)
T PRK09162 88 KVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTH 138 (181)
T ss_pred ecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcCc
Confidence 221122368999999999999999999999999999999999999999863
No 29
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.69 E-value=4.6e-16 Score=118.33 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=85.0
Q ss_pred HhcCHHHHHHHHHHHHHHhhcC-CCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEe
Q 029645 40 LLLDHKAFKDTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMH 118 (190)
Q Consensus 40 ~~~~~~~~~~~~~~la~~i~~~-~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (190)
++.+++.++..++.++.++.+. ++|+|+|+++||+.+|..|++.|++|.+..-+- .+|..+ .+....+.
T Consensus 8 ~~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~---------ssY~~~-~~~~~~~~ 77 (156)
T PRK09177 8 FPVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVCI---------SSYDHD-NQGELKVL 77 (156)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEEE---------EEECCC-cCCcEEEe
Confidence 3468888999999999999754 589999999999999999999999996421110 112111 12233443
Q ss_pred cCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 119 VGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 119 ~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
.+...+|++||||||+++||.|+.++++.+.+ +.++++..++.
T Consensus 78 ~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~ 120 (156)
T PRK09177 78 KRAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPA 120 (156)
T ss_pred cCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcC
Confidence 34446899999999999999999999999975 56888888863
No 30
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=128.53 Aligned_cols=123 Identities=19% Similarity=0.182 Sum_probs=85.0
Q ss_pred hcCHHHHHHHHHHHHHHhh--cCCCCEEEEeC-------CCChhhHHHHHHHhCC----CEEEEeccCCCCCceeeeeee
Q 029645 41 LLDHKAFKDTVDIFVDRYR--DMGISVVAGIE-------ARGFVFGPSIALAIGA----KFVPLRKPNKLPGEVISEAYV 107 (190)
Q Consensus 41 ~~~~~~~~~~~~~la~~i~--~~~~d~Iv~i~-------~gG~~~a~~la~~L~~----p~~~~rk~~~~~~~~~~~~~~ 107 (190)
-.+..+...+++.++..+. ...+|.||+|| .+||+++..||+.++. |+...+++...++........
T Consensus 88 ~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~~r 167 (225)
T COG1040 88 QGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALER 167 (225)
T ss_pred CCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccchHHH
Confidence 4477888899999998887 34789999998 5999999999888854 432222222111111111001
Q ss_pred eecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeec
Q 029645 108 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (190)
Q Consensus 108 ~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~ 164 (190)
...-.+.+.+..+.. ..++|+|||||+|||+|+.++.+.|++.|++.+.+++++..
T Consensus 168 r~nl~~aF~~~~~~~-~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar~ 223 (225)
T COG1040 168 RRNLKGAFRLKKGIE-EPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARA 223 (225)
T ss_pred HHhccCCeecCCCCC-CCCeEEEEecccccHHHHHHHHHHHHHcCCceEEEEEEEec
Confidence 111123455443332 22899999999999999999999999999999999998864
No 31
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.66 E-value=1.6e-15 Score=117.67 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=87.6
Q ss_pred hHhcCHHHHHHHHHHHHHHhhcC-----CCCEEEEeCCCChhhHHHHHHHhCCCEE--EEeccCCCCCceeeeeeeee-c
Q 029645 39 TLLLDHKAFKDTVDIFVDRYRDM-----GISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLE-Y 110 (190)
Q Consensus 39 ~~~~~~~~~~~~~~~la~~i~~~-----~~d~Iv~i~~gG~~~a~~la~~L~~p~~--~~rk~~~~~~~~~~~~~~~~-~ 110 (190)
.++.+.+.++..++.++.++.+. ..++++||.+||+.+|..|++.|+.|+. +++.++ |... .
T Consensus 6 ~~l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ss----------Y~~~~~ 75 (178)
T PRK15423 6 EVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASS----------YGSGMS 75 (178)
T ss_pred EEecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEE----------ecCCCc
Confidence 34567777777777777776532 2469999999999999999999999743 443322 1100 0
Q ss_pred ccceEEEec--CCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 111 GTDRLEMHV--GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 111 ~~~~~~l~~--~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
......+.. ....+||+|||||||++||.||.++.+.+++.|++.+.++++++++.
T Consensus 76 ~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~ 133 (178)
T PRK15423 76 TTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPS 133 (178)
T ss_pred ccCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 111233322 22468999999999999999999999999999999999999999974
No 32
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.66 E-value=4.9e-16 Score=121.82 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=79.5
Q ss_pred cCHHHHHHHHHHHHHHhhcC---CCCEEEEeC-------CCChhhHHHHHHHhCCC---EE-EEeccCCCCCceeeeeee
Q 029645 42 LDHKAFKDTVDIFVDRYRDM---GISVVAGIE-------ARGFVFGPSIALAIGAK---FV-PLRKPNKLPGEVISEAYV 107 (190)
Q Consensus 42 ~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~-------~gG~~~a~~la~~L~~p---~~-~~rk~~~~~~~~~~~~~~ 107 (190)
.+..+...+++.++..+... .+|.|++|| .+||+++..+|+.+... +. .+.+.+..++...+...+
T Consensus 56 ~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~~~Q~~l~~~~R 135 (190)
T TIGR00201 56 GQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNNETQSKLKATLR 135 (190)
T ss_pred CChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecccccccCCHHHH
Confidence 36777788888887765432 358999998 59999988888776432 11 122221111111110000
Q ss_pred eecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029645 108 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (190)
Q Consensus 108 ~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~ 162 (190)
.....+.|.+... ..+|++|||||||+|||+|+.++.+.|++.|++.+.+++++
T Consensus 136 ~~n~~~~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 136 FLNLENAFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHhCcEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 0111224554323 35799999999999999999999999999999999999886
No 33
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.62 E-value=6.8e-15 Score=122.12 Aligned_cols=110 Identities=22% Similarity=0.324 Sum_probs=87.1
Q ss_pred CCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEe-cCCCCCCCEEEEEcCccCchHHH
Q 029645 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAIEPGERALVIDDLVATGGTL 141 (190)
Q Consensus 63 ~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~gk~VLlVDDvvtTG~Tl 141 (190)
.++|++++.||+.+|..+|+.+++|+.+++|.+.... ...+. .....+|++|+||||+++||+|+
T Consensus 155 ~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~--------------~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl 220 (285)
T PRK00934 155 DPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPT--------------EVEIAPKNLDVKGKDVLIVDDIISTGGTM 220 (285)
T ss_pred CCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCC--------------eEEEeccccccCCCEEEEEcCccccHHHH
Confidence 4589999999999999999999999988876543211 11111 11235899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 142 SAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 142 ~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
.++++.|++.|++.+.++++|......+.+++.+..+..++..++
T Consensus 221 ~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i~~i~~tnt 265 (285)
T PRK00934 221 ATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVDEIIVTDT 265 (285)
T ss_pred HHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCCCEEEEcCC
Confidence 999999999999999999999887666777776555666666554
No 34
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.62 E-value=1.2e-14 Score=112.70 Aligned_cols=120 Identities=22% Similarity=0.282 Sum_probs=85.3
Q ss_pred hHhcCHHHHHHHHHHHHHHhhcC----CCCEEEEeCCCChhhHHHHHHHh----CCC--EEEEeccCCCCCceeeeeeee
Q 029645 39 TLLLDHKAFKDTVDIFVDRYRDM----GISVVAGIEARGFVFGPSIALAI----GAK--FVPLRKPNKLPGEVISEAYVL 108 (190)
Q Consensus 39 ~~~~~~~~~~~~~~~la~~i~~~----~~d~Iv~i~~gG~~~a~~la~~L----~~p--~~~~rk~~~~~~~~~~~~~~~ 108 (190)
..+.+++.++..++.++.++.+. +.++|+|+.+||+++|..+++.| +.| +.+++........ .
T Consensus 4 ~~l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~------~- 76 (176)
T PRK05205 4 KEILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDL------T- 76 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCc------c-
Confidence 45568888999999999888652 46899999999999999999999 544 2332211000000 0
Q ss_pred ecccc-eEE-EecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcC-CeEEEEEEEeecC
Q 029645 109 EYGTD-RLE-MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMG-AEVVECACVVGLP 165 (190)
Q Consensus 109 ~~~~~-~~~-l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~G-a~~i~v~vl~~~~ 165 (190)
..+.. ... .......+|++|||||||++||+|+.++++.|++.| ++.+.++++++++
T Consensus 77 ~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 77 KKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred ccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 00100 110 001123589999999999999999999999999999 7889999999984
No 35
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.61 E-value=1.7e-14 Score=114.46 Aligned_cols=118 Identities=11% Similarity=0.157 Sum_probs=86.6
Q ss_pred hHhcCHHHHHHHHHHHHHHhhcC---------CCCEEEEeCCCChhhHHHHHHHhC---CCEE--EEeccCCCCCceeee
Q 029645 39 TLLLDHKAFKDTVDIFVDRYRDM---------GISVVAGIEARGFVFGPSIALAIG---AKFV--PLRKPNKLPGEVISE 104 (190)
Q Consensus 39 ~~~~~~~~~~~~~~~la~~i~~~---------~~d~Iv~i~~gG~~~a~~la~~L~---~p~~--~~rk~~~~~~~~~~~ 104 (190)
..+.+++.++..++.||.++.+. ++++++||.+||+.+|..|++.|+ .|+. +++- .
T Consensus 25 ~~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~v----------s 94 (211)
T PTZ00271 25 HTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICA----------S 94 (211)
T ss_pred cEecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEE----------E
Confidence 44668888887777777776532 256899999999999999999996 5532 2211 1
Q ss_pred eeeee-cccceEEEec--CCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 105 AYVLE-YGTDRLEMHV--GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 105 ~~~~~-~~~~~~~l~~--~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
+|... .....+.+.. ...++||+|||||||++||.||.++++.|++.+++.+.+++|++++.
T Consensus 95 sY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~ 159 (211)
T PTZ00271 95 SYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPS 159 (211)
T ss_pred ecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEccc
Confidence 12110 1112233221 23468999999999999999999999999999999999999999964
No 36
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.61 E-value=1.1e-14 Score=121.62 Aligned_cols=113 Identities=23% Similarity=0.265 Sum_probs=87.8
Q ss_pred CCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHH
Q 029645 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (190)
Q Consensus 62 ~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl 141 (190)
+.++|+++..||..+|..+|..+++|+.+++|.+..... ...........+|++|+|||||+|||+|+
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~------------~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl 227 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRD------------VEISLPDAAPWAGRTPVLVDDIVSTGRTL 227 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCe------------EEEEeccCcccCCCEEEEEecccCcHHHH
Confidence 346899999999999999999999999888776532111 01111112335899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 142 SAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 142 ~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
.++++.|++.||+.+.+++.|.....++.+++...++..++.-++
T Consensus 228 ~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~~i~~iv~Tdt 272 (301)
T PRK07199 228 IEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGIARVVSTDT 272 (301)
T ss_pred HHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999999986666667776555666665544
No 37
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.59 E-value=4.6e-15 Score=115.73 Aligned_cols=113 Identities=18% Similarity=0.307 Sum_probs=82.2
Q ss_pred HhcCHHHHHHHHHHHHHHhhc--CCCCEEEEeCCCChhhHHHHHHHhCC-CEEEEeccCCCCCceeeeeeeeec-ccceE
Q 029645 40 LLLDHKAFKDTVDIFVDRYRD--MGISVVAGIEARGFVFGPSIALAIGA-KFVPLRKPNKLPGEVISEAYVLEY-GTDRL 115 (190)
Q Consensus 40 ~~~~~~~~~~~~~~la~~i~~--~~~d~Iv~i~~gG~~~a~~la~~L~~-p~~~~rk~~~~~~~~~~~~~~~~~-~~~~~ 115 (190)
.+.+++.++.+++.+|+++.+ ..||+|+++.+||+.+|..||+.|++ |+..+.-.. |.... .....
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~----------y~~~~~~~~~~ 74 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEH----------YDETAERDGEA 74 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEE----------ehhhcccCCcc
Confidence 456889999999999999974 48999999999999999999999998 665543211 10000 00111
Q ss_pred EEecC---CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029645 116 EMHVG---AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (190)
Q Consensus 116 ~l~~~---~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~ 162 (190)
.+..+ ....|++|||||||.+||.||..+.+.|++.....+.++++-
T Consensus 75 ~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l~ 124 (192)
T COG2236 75 KVKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVLQ 124 (192)
T ss_pred eeecCccccccCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhhh
Confidence 12111 116899999999999999999999999999555555544443
No 38
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.59 E-value=1.3e-14 Score=127.03 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCE--EEEeccCCCCCceeeeeeeeecccceEEEec-C
Q 029645 44 HKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKF--VPLRKPNKLPGEVISEAYVLEYGTDRLEMHV-G 120 (190)
Q Consensus 44 ~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~--~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 120 (190)
.+....+++.|++.+.. +.|+|+++|.+|++.|..+|+.+++|+ ..+||+.. .................+.+.. .
T Consensus 258 ~~~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~~-~r~~i~~~qr~rn~~~~~~~~~~~ 335 (445)
T PRK08525 258 YEVRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHYV-GRTFIEPTQEMRNLKVKLKLNPMS 335 (445)
T ss_pred HHHHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeecc-ccccCCHHHHHHhhheeEEecccc
Confidence 35667888999887753 678999999999999999999999997 34554321 1111110000000111233221 2
Q ss_pred CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEE
Q 029645 121 AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILV 182 (190)
Q Consensus 121 ~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~ 182 (190)
...+||+|+||||++|||+|+.++++.|+++||+.|.+++.+..-.......+..-++..|+
T Consensus 336 ~~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~li 397 (445)
T PRK08525 336 KVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEELI 397 (445)
T ss_pred cccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhhEE
Confidence 23589999999999999999999999999999999999888876443333334333344443
No 39
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.59 E-value=3.3e-14 Score=119.70 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=87.3
Q ss_pred CCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHH
Q 029645 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 142 (190)
Q Consensus 63 ~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~ 142 (190)
..+||++..||..+|..+|+.|+.|+.+++|++..... .....+.+. +. .+|++|||||||+|||+|+.
T Consensus 166 ~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~---------~~~~~~~~~-gd-v~Gr~viIVDDIidTG~Tl~ 234 (320)
T PRK02269 166 DVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKM---------NTSEVMNII-GN-VKGKKCILIDDMIDTAGTIC 234 (320)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCC---------ceeEEEEec-cc-cCCCEEEEEeeecCcHHHHH
Confidence 35899999999999999999999999887765421100 000112221 33 58999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 143 AAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 143 ~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
++++.|++.|++.+.+++.|.....++.+++...++..++.-++
T Consensus 235 ~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~~i~~iv~Tdt 278 (320)
T PRK02269 235 HAADALAEAGATEVYASCTHPVLSGPALDNIQKSAIEKLVVLDT 278 (320)
T ss_pred HHHHHHHHCCCCEEEEEEECcccCchHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999999987666667776556766666554
No 40
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.58 E-value=2.5e-14 Score=115.48 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=90.3
Q ss_pred ecHhHhcCHHHHHHHHHHHHHHhhcC---CCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCC-C---Cceeeeeeee
Q 029645 36 DITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKL-P---GEVISEAYVL 108 (190)
Q Consensus 36 d~~~~~~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~-~---~~~~~~~~~~ 108 (190)
++..++.+.+.++..++.||.++.+. +..+|+||.+||+.+++.|.+.|+...-.-...... . ......+|.-
T Consensus 52 ~~~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~ 131 (241)
T PTZ00149 52 YLTKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCN 131 (241)
T ss_pred cccEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccC
Confidence 34567788888988888888888643 556999999999999999999997210000000000 0 0111112321
Q ss_pred ecccceEEEecC--CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 109 EYGTDRLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 109 ~~~~~~~~l~~~--~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
...+..+.+... ...+|++|||||||++||+|+.++++.|++.|++.+.++++++++.
T Consensus 132 ~~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 132 DESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRT 191 (241)
T ss_pred CCcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCc
Confidence 112223333222 2359999999999999999999999999999999999999999873
No 41
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.57 E-value=5e-14 Score=107.21 Aligned_cols=121 Identities=21% Similarity=0.302 Sum_probs=91.9
Q ss_pred cHhHhcCHHHHHHHHHHHHHHhhcC---CCCEEEEeCCCChhhHHHHHHHhCCCEEE--EeccCCCCCceeeeeeeee-c
Q 029645 37 ITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVISEAYVLE-Y 110 (190)
Q Consensus 37 ~~~~~~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~a~~la~~L~~p~~~--~rk~~~~~~~~~~~~~~~~-~ 110 (190)
...++.+.+.++.-++++++++.+. +..+++|+..|+++|+..|++.++.|+.. +.- .+|... .
T Consensus 7 ~~evLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~v----------SSYg~~t~ 76 (178)
T COG0634 7 IKEVLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHV----------SSYGGGTS 76 (178)
T ss_pred cceEeeCHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEE----------eccCCCcc
Confidence 4456678888887777777777643 45689999999999999999999988643 211 112111 1
Q ss_pred ccceEEEecC--CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCc
Q 029645 111 GTDRLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEV 167 (190)
Q Consensus 111 ~~~~~~l~~~--~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~ 167 (190)
++..+.+.++ ...+||+|||||||++||.||..+.+.|...||+.+.+++|.+++..
T Consensus 77 ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~ 135 (178)
T COG0634 77 SSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPER 135 (178)
T ss_pred cCCceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCccc
Confidence 1223444433 34699999999999999999999999999999999999999999853
No 42
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.56 E-value=4.6e-14 Score=116.97 Aligned_cols=124 Identities=21% Similarity=0.320 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEe-cCCCCCCCE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAIEPGER 127 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~gk~ 127 (190)
.+++++.+.. ..+..+||++..||...|..+|..|+.|+.++.|+|. +.. +..++. ..-..+||+
T Consensus 151 ~l~~~~~~~~-~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~-~~~------------~~v~~~~~~gdV~gk~ 216 (314)
T COG0462 151 LLAEYIREKY-DLDDPVVVSPDKGGVKRARALADRLGAPLAIIDKRRD-SSP------------NVVEVMNLIGDVEGKD 216 (314)
T ss_pred HHHHHHHHhc-CCCCcEEECCCccHHHHHHHHHHHhCCCEEEEEEeec-CCC------------CeEEEeecccccCCCE
Confidence 4455555544 2222689999999999999999999999998877762 100 011111 112359999
Q ss_pred EEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 128 ALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 128 VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
++||||+++||+|+..++++|++.||+.+.+++.|........+++++..+..++.-++
T Consensus 217 ~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~~i~~vivTnT 275 (314)
T COG0462 217 VVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEASAIDEVIVTDT 275 (314)
T ss_pred EEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhChHHHHHHhcCCCCEEEEeCC
Confidence 99999999999999999999999999999999999886544555666555666665544
No 43
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.56 E-value=7.5e-14 Score=117.06 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=84.9
Q ss_pred CCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHH
Q 029645 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (190)
Q Consensus 62 ~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl 141 (190)
+..+|+++..||+.+|..+|+.||+|+.+++|.+..... ...+.+. + ..+|++|+||||+++||+|+
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~-----------~~~~~~~-~-~~~g~~vliVDDii~TG~T~ 224 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANV-----------SEVMNII-G-DVEGRDCILVDDMIDTAGTL 224 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeeccccee-----------EEEEeec-c-cCCCCEEEEEecccCcHHHH
Confidence 557999999999999999999999999888765532111 0112221 2 25899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEecc
Q 029645 142 SAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPR 185 (190)
Q Consensus 142 ~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~ 185 (190)
.++++.|++.|++.+.+++.|......+.+++....+..++..+
T Consensus 225 ~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~~~~~~iv~t~ 268 (309)
T PRK01259 225 CKAAEALKERGAKSVYAYATHPVLSGGAIERIENSVIDELVVTD 268 (309)
T ss_pred HHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhcCCCCEEEEec
Confidence 99999999999999999999888665666666544444444433
No 44
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.56 E-value=3.6e-14 Score=114.16 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=78.6
Q ss_pred hcCHHHHHHHHHHHHHHhh------c-CCCCEEEEeC-------CCChhhHHHHHHH----hCCCEEE--EeccCC-CCC
Q 029645 41 LLDHKAFKDTVDIFVDRYR------D-MGISVVAGIE-------ARGFVFGPSIALA----IGAKFVP--LRKPNK-LPG 99 (190)
Q Consensus 41 ~~~~~~~~~~~~~la~~i~------~-~~~d~Iv~i~-------~gG~~~a~~la~~----L~~p~~~--~rk~~~-~~~ 99 (190)
-.++.+...+++.+++.+. . ..+|.|++|| .|||+++..+|.. +++|+.. +.+.+. .++
T Consensus 84 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~q 163 (227)
T PRK11595 84 SRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATATQ 163 (227)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCCc
Confidence 3477777888888875432 1 2578999998 4699987766654 5777631 222221 111
Q ss_pred ceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEee
Q 029645 100 EVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 163 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~ 163 (190)
...+...........+.+. + ..+|++|||||||+|||+|+.++++.|++.|++.+.+++++.
T Consensus 164 ~~l~~~~R~~n~~~~f~~~-~-~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~ 225 (227)
T PRK11595 164 HFLSARLRKRNLKNAFRLE-L-PVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCR 225 (227)
T ss_pred ccCCHHHHhhhhhhhhccC-C-CCCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEe
Confidence 1111000001111123322 2 258999999999999999999999999999999999999875
No 45
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.53 E-value=1.8e-13 Score=115.02 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=91.0
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhC-CCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEE
Q 029645 50 TVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERA 128 (190)
Q Consensus 50 ~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~V 128 (190)
+++++.+.+ +.+..+|+++..||...|..+|..|+ .|+..+.|.+..... ...+.+ .+. .+|++|
T Consensus 155 l~~~i~~~~-~~~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~-----------~~~~~~-~gd-v~Gr~v 220 (319)
T PRK04923 155 LLADIWRAY-GTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANV-----------ATVMNI-IGD-VQGKTC 220 (319)
T ss_pred HHHHHHHhc-CCCCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCc-----------eEEEec-ccC-CCCCEE
Confidence 444443332 12345899999999999999999998 899988776532111 001111 123 589999
Q ss_pred EEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 129 LVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 129 LlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
+|||||++||+|+.++++.|++.||+.+.+++.|.....++.+++...++..++.-+.
T Consensus 221 iIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s~i~~iv~Tdt 278 (319)
T PRK04923 221 VLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDELVVTDT 278 (319)
T ss_pred EEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhCCCCEEEEeCC
Confidence 9999999999999999999999999999999999987655666776556666665444
No 46
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.53 E-value=1.8e-13 Score=114.47 Aligned_cols=126 Identities=23% Similarity=0.228 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhC-CCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGER 127 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~ 127 (190)
.+++++...+. .+..+|+++..||+.+|..+|+.|+ .|+.+++|.+..... +.... .......+|++
T Consensus 136 ~la~~i~~~~~-~~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~----------~~~~~-~~~~~dv~gr~ 203 (304)
T PRK03092 136 LLADYVRDKYD-LDNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVP----------NQVVA-NRVVGDVEGRT 203 (304)
T ss_pred HHHHHHHHhcC-CCCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCC----------CceEE-EecCcCCCCCE
Confidence 44445444332 2335899999999999999999999 899888776521100 00011 11122358999
Q ss_pred EEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 128 ALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 128 VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
|+||||+++||+|+.++++.|++.|++.+.+++.|......+.+++...++..++..+.
T Consensus 204 viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~~~i~~t~t 262 (304)
T PRK03092 204 CVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGAREVVVTDT 262 (304)
T ss_pred EEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCCCEEEEeee
Confidence 99999999999999999999999999999999988876556667776545666555444
No 47
>PLN02440 amidophosphoribosyltransferase
Probab=99.52 E-value=9.4e-14 Score=122.63 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE--EeccCCCCCceeeeeeeeecccceEEEec-CC
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GA 121 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~--~rk~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 121 (190)
+....+++.|++.+.. ++|+|+++|.+|+.+|..+|+.+++|+.. +|.+. ....+...............+.. ..
T Consensus 259 ~~r~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry-~~rt~i~~~q~~r~~~~~~k~~~~~~ 336 (479)
T PLN02440 259 ESRLEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHY-VGRTFIEPSQKIRDFSVKLKLNPVRS 336 (479)
T ss_pred HHHHHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEee-ccccccCcchhhhhhhheeeeecccc
Confidence 3445677778776643 68999999999999999999999999853 33221 11111100000000111122211 12
Q ss_pred CCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEe
Q 029645 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 162 (190)
Q Consensus 122 ~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~ 162 (190)
..+||+||||||++|||+|+.++++.|+++|++.+.++++.
T Consensus 337 ~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 337 VLEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred cccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 35899999999999999999999999999999999998886
No 48
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.50 E-value=5.1e-13 Score=112.90 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=85.5
Q ss_pred CCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHH
Q 029645 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 142 (190)
Q Consensus 63 ~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~ 142 (190)
..+|+++..||...|..+|+.++.|+.+++|.+..... ...+.+. +. .+|++|+||||+++||+|+.
T Consensus 169 ~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~-----------~~~~~~~-gd-v~Gk~VIIVDDIi~TG~Tl~ 235 (332)
T PRK00553 169 DLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNV-----------AESINVL-GE-VKNKNCLIVDDMIDTGGTVI 235 (332)
T ss_pred CeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcce-----------EeeEEee-cc-CCCCEEEEEeccccchHHHH
Confidence 34899999999999999999999999988876532110 0122221 33 58999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEeecCCccccccccC----CCeEEEEeccc
Q 029645 143 AAVRLLERMGAEVVECACVVGLPEVRGQRRLDG----KPLYILVEPRL 186 (190)
Q Consensus 143 ~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~----~~~~sl~~~~~ 186 (190)
++++.|++.||+.+.+++.|.....++.+++.. -++..+++-+.
T Consensus 236 ~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tnt 283 (332)
T PRK00553 236 AAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNS 283 (332)
T ss_pred HHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEEEEeCC
Confidence 999999999999999999998866566666642 25666665443
No 49
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.50 E-value=1.4e-13 Score=121.62 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCceeeeeeeeecccceEEEe-cCCC
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAI 122 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 122 (190)
+....+++.|+.... .++|+|+|+|.+|+++|..+|+.+++|+.. +.|++.....+...........-++.+. ....
T Consensus 296 ~~R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~ 374 (500)
T PRK07349 296 SYRQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDV 374 (500)
T ss_pred HHHHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccc
Confidence 555678888886553 368999999999999999999999999864 2332211011110000000000012221 1223
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEE
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 159 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~ 159 (190)
.+||+|+||||++|||+|+.+++++|+++||+.+.+.
T Consensus 375 ~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~ 411 (500)
T PRK07349 375 LAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMR 411 (500)
T ss_pred cCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEE
Confidence 5899999999999999999999999999999998765
No 50
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.50 E-value=3.5e-13 Score=113.58 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=85.3
Q ss_pred CCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHH
Q 029645 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 142 (190)
Q Consensus 63 ~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~ 142 (190)
..+|+++..||..+|..+|+.|++|+.++++.+... + .. ...+ .+ ..+|++|+|||||++||+|+.
T Consensus 170 ~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~-------~----~~-~~~i-~g-dV~gk~viIVDDIidTG~Tl~ 235 (323)
T PRK02458 170 DVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDS-------E----RE-EGYI-IG-DVAGKKAILIDDILNTGKTFA 235 (323)
T ss_pred ceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCC-------c----ce-eecc-cc-ccCCCEEEEEcceeCcHHHHH
Confidence 348999999999999999999999998776543211 0 00 0111 12 358999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 143 AAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 143 ~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
++++.|++.||+.+.+++.|.....+..+++...++..++.-+.
T Consensus 236 ~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i~~iv~TdT 279 (323)
T PRK02458 236 EAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPIKEILVTDS 279 (323)
T ss_pred HHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCCCEEEEECC
Confidence 99999999999999999999987656666776666666665544
No 51
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.50 E-value=2.3e-13 Score=119.93 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCceeeeeeeeecccceEEEec-CCC
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAI 122 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 122 (190)
.....+++.|++.... +.|+|+++|.+|...|..+|+.+++|+.. +.+.+.....++............+.+.. ...
T Consensus 272 ~~R~~~G~~La~~~~~-~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~ 350 (469)
T PRK05793 272 ESRVRAGRQLYKEYPV-DADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVN 350 (469)
T ss_pred HHHHHHHHHHHHhcCC-CCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccc
Confidence 4456888888887743 67899999999999999999999999964 22222110111100000000011222211 123
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeec
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~ 164 (190)
.+||+|+||||+++||+|+.++++.|+++||+.+.+++.+..
T Consensus 351 v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~ 392 (469)
T PRK05793 351 VEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPP 392 (469)
T ss_pred cCCCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCC
Confidence 589999999999999999999999999999999998877764
No 52
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=1e-13 Score=123.05 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE--EeccCCCCCceee--eeeeeecccceEEEec
Q 029645 44 HKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVIS--EAYVLEYGTDRLEMHV 119 (190)
Q Consensus 44 ~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~--~rk~~~~~~~~~~--~~~~~~~~~~~~~l~~ 119 (190)
..+.+.+++.+...+...+.|+|+++|.+|..+|..+|+.+++|+.. ++++.. ...+.. +..+...-+..+...
T Consensus 275 ~~lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~-~rt~i~~~q~~R~~~vr~~f~~~- 352 (501)
T PRK09246 275 LRMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYV-GRTFIMPGQAQRKKSVRQKLNAI- 352 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecc-cccccCcCHHHHHHHHHhhcCCc-
Confidence 34444555555444433357999999999999999999999999853 332211 111110 000000001122211
Q ss_pred CCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEee
Q 029645 120 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 163 (190)
Q Consensus 120 ~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~ 163 (190)
....+||+|+||||++|||+|+.+++++|+++||+.|.+++++.
T Consensus 353 ~~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap 396 (501)
T PRK09246 353 RAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAP 396 (501)
T ss_pred cccccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence 22358999999999999999999999999999999999988854
No 53
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.49 E-value=5.1e-13 Score=112.05 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEe-cCCCCCCC
Q 029645 48 KDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAIEPGE 126 (190)
Q Consensus 48 ~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~gk 126 (190)
..+++++.+.. .+.++|+++..||+.+|..+|+.|++|+..++|.+..... ..... .....+|+
T Consensus 147 ~~l~~~i~~~~--~~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~-------------~~~~~~~~~~v~g~ 211 (308)
T TIGR01251 147 PVLAEYLKKKI--LDNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATN-------------EVEVMNLVGDVEGK 211 (308)
T ss_pred HHHHHHHHhhC--CCCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCC-------------EEEEEecccccCCC
Confidence 34455554432 2457999999999999999999999999988765531110 11111 12235899
Q ss_pred EEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 127 RALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 127 ~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
+|+||||+++||+|+.++++.|++.|++.+.+++.+.....++.+++....+..+++.+.
T Consensus 212 ~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~~~~~iv~tdt 271 (308)
T TIGR01251 212 DVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGPAIERIANAGVEEVIVTNT 271 (308)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999999999999999999988765555666665444666665554
No 54
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.49 E-value=8.8e-13 Score=113.06 Aligned_cols=116 Identities=20% Similarity=0.300 Sum_probs=86.2
Q ss_pred CCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccce-EEEe-cCCCCCCCEEEEEcCccCchH
Q 029645 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDR-LEMH-VGAIEPGERALVIDDLVATGG 139 (190)
Q Consensus 62 ~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~~~~gk~VLlVDDvvtTG~ 139 (190)
+..+|+++..||...|..+|..|+.|+.+++|.+...... .+... .... .+...+|++|+||||+++||+
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~--------~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~ 278 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVV--------NGRNPIVAHEFLGRDVEGKDVLIVDDMIASGG 278 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccc--------cCCCceEEEecCCcccCCCEEEEEeCCcCcHH
Confidence 3468999999999999999999999999988776321110 01111 1111 132468999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEeecCCccccccccC----CCeEEEEeccc
Q 029645 140 TLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDG----KPLYILVEPRL 186 (190)
Q Consensus 140 Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~----~~~~sl~~~~~ 186 (190)
|+..+++.|++.|++.+.+++.|.... .+.+++.. -++..++.-++
T Consensus 279 Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdT 328 (382)
T PRK06827 279 SMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNL 328 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCC
Confidence 999999999999999999999998854 67666632 14555554443
No 55
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.47 E-value=5.8e-13 Score=117.51 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE--EeccCCCCCceeeeeeeeecccceEEEec--
Q 029645 44 HKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVISEAYVLEYGTDRLEMHV-- 119 (190)
Q Consensus 44 ~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~--~rk~~~~~~~~~~~~~~~~~~~~~~~l~~-- 119 (190)
.+..+.+++.|++.... ++|+|+|||.+|+++|..+|+.+++|+.. +|.+. ....+..... ......+.+..
T Consensus 278 y~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y-~grt~i~~~q--~~r~~~v~~k~~~ 353 (479)
T PRK09123 278 YEVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHY-VGRTFIQPTQ--QIRNLGVKLKHNA 353 (479)
T ss_pred HHHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEee-cCcccccccc--ccccccEEEEecc
Confidence 36677888888877643 68999999999999999999999999863 44321 1111110000 00111222211
Q ss_pred -CCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEE
Q 029645 120 -GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (190)
Q Consensus 120 -~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~v 160 (190)
....+||+|+||||+++||+|+.++++.|+++|++.+.+.+
T Consensus 354 ~~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 354 NRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred cccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 22358999999999999999999999999999999988876
No 56
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.46 E-value=2.8e-13 Score=119.20 Aligned_cols=115 Identities=22% Similarity=0.218 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCceeeee--eeeecccceEEEecCC
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEA--YVLEYGTDRLEMHVGA 121 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 121 (190)
+....+++.|++... .++|+|+++|..|...|..+|+.+|+|+.. +.|++.....+.... .+...-+..+... ..
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~-~~ 344 (471)
T PRK06781 267 AARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAV-RG 344 (471)
T ss_pred HHHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceecc-cc
Confidence 556788899987764 368999999999999999999999999864 222221111111000 0000111234322 23
Q ss_pred CCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEE
Q 029645 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (190)
Q Consensus 122 ~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl 161 (190)
..+||+|+||||++|||+|+++++++|+++|++.|.+.+-
T Consensus 345 ~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~ 384 (471)
T PRK06781 345 VVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIA 384 (471)
T ss_pred ccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEEC
Confidence 3589999999999999999999999999999999887543
No 57
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.46 E-value=1.6e-12 Score=108.73 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=84.5
Q ss_pred CEEEEeCCCChhhHHHHHHHh-CCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHH
Q 029645 64 SVVAGIEARGFVFGPSIALAI-GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 142 (190)
Q Consensus 64 d~Iv~i~~gG~~~a~~la~~L-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~ 142 (190)
-+|+++..||...|..++..+ +.|+..++|.+..... ...+.+ ....+|++|+||||+++||+|+.
T Consensus 153 ~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~-----------~~~~~~--~~~v~g~~viivDDii~TG~Tl~ 219 (302)
T PLN02369 153 LVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNV-----------AEVMNL--IGDVKGKVAIMVDDMIDTAGTIT 219 (302)
T ss_pred eEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcce-----------eeeEec--CCCCCCCEEEEEcCcccchHHHH
Confidence 389999999999999999999 7899888776532110 011211 22358999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 143 AAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 143 ~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
++++.|++.|++.+.+++.|......+.+++.+..+..++..+.
T Consensus 220 ~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~~~~~~iv~t~t 263 (302)
T PLN02369 220 KGAALLHQEGAREVYACATHAVFSPPAIERLSSGLFQEVIVTNT 263 (302)
T ss_pred HHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999987776656777776555666655544
No 58
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.45 E-value=7.5e-13 Score=116.54 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCceeeeeeeeecccceEEEec---C
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV---G 120 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~~---~ 120 (190)
+....+++.|++... .+.|+|+|||..|.+.|..+|+.+++|+.. +.|.+....++...... .....+.+.. .
T Consensus 275 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~--~R~~~~~~kl~~~~ 351 (474)
T PRK06388 275 QARVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQS--DRKAAIKLKLNPIR 351 (474)
T ss_pred HHHHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEecccCCcccCCchh--hhhhceeEEecccc
Confidence 445678888887653 367999999999999999999999999854 33322221111110000 0011122211 1
Q ss_pred CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEE
Q 029645 121 AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (190)
Q Consensus 121 ~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~v 160 (190)
...+||+||||||++|||+|+++++++|+++|++.|.+.+
T Consensus 352 ~~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri 391 (474)
T PRK06388 352 EVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRI 391 (474)
T ss_pred ccccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 2358999999999999999999999999999999887754
No 59
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.45 E-value=6.6e-13 Score=116.04 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCceeeeeeeeecccceEEEec-CC
Q 029645 44 HKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GA 121 (190)
Q Consensus 44 ~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 121 (190)
......+++.|++... .++|+|+++|..|...|..+|+.+|+|+.. +.|++.....+..... .. ..-.+.+.. ..
T Consensus 254 ~~~R~~~G~~La~~~~-~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~q-r~-~~~~~k~~~~~~ 330 (442)
T PRK08341 254 YSARYRMGVELARESP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSG-RE-LKVKLKLSPVRE 330 (442)
T ss_pred HHHHHHHHHHhhcccC-CCCceEEEecCchHHHHHHHHHHhCCCchheEEEeccccccccCcCc-hh-hhheeeeccccc
Confidence 3556688888887664 367999999999999999999999999964 4443321111111000 00 000122211 12
Q ss_pred CCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEE
Q 029645 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (190)
Q Consensus 122 ~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~v 160 (190)
..+||+|+||||++|||+|+.+++++|+++|++.+.+.+
T Consensus 331 ~v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~ 369 (442)
T PRK08341 331 VINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRI 369 (442)
T ss_pred ccCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEE
Confidence 358999999999999999999999999999999988765
No 60
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.44 E-value=3.5e-13 Score=118.77 Aligned_cols=114 Identities=20% Similarity=0.253 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCcee--eeeeeeecccceEEEecCCC
Q 029645 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVI--SEAYVLEYGTDRLEMHVGAI 122 (190)
Q Consensus 46 ~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 122 (190)
....+++.|++.+.. ++|+|+|||..|..+|..+|+.+++|+.. +.|++.....+. .+..+...-+..+... ...
T Consensus 270 ~R~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~-~~~ 347 (484)
T PRK07272 270 ARKRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAV-SGV 347 (484)
T ss_pred HHHHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCcccc-ccc
Confidence 336778888876643 57999999999999999999999999843 222221111111 0000000011123221 233
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEE
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl 161 (190)
.+|++|+||||++|||+|+.+++++|+++|++.+.+++.
T Consensus 348 ~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~ 386 (484)
T PRK07272 348 VKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIA 386 (484)
T ss_pred cCCCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEe
Confidence 589999999999999999999999999999999999988
No 61
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.44 E-value=3.2e-13 Score=118.32 Aligned_cols=115 Identities=21% Similarity=0.176 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCceeeeee--eeecccceEEEecCC
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAY--VLEYGTDRLEMHVGA 121 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ 121 (190)
.....+++.|++... .++|+|++||..|+++|..+|+.+++|+.. +.|++.....+..... +.......+... ..
T Consensus 257 ~~R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~-~~ 334 (442)
T TIGR01134 257 KARKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPI-RE 334 (442)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEeccccccccCCCHHHHHHHHhhhcccc-cc
Confidence 445688888887653 378999999999999999999999999854 3332211111100000 000001112111 12
Q ss_pred CCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEE
Q 029645 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (190)
Q Consensus 122 ~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl 161 (190)
..+||+|+||||++|||+|+++++++|+++|++.+.+.+.
T Consensus 335 ~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 335 VFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred cCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 3589999999999999999999999999999999998766
No 62
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.43 E-value=1.1e-12 Score=116.24 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCceeeeeeeeecccceEEEec---C
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV---G 120 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~~---~ 120 (190)
+....+++.|++..+ .+.|+|++||.+|+++|..+|+.+++|+.. +.|++.....+....+. .....+.+.. .
T Consensus 286 ~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~--~r~~~~r~k~~~~~ 362 (510)
T PRK07847 286 AARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQT--IRQLGIRLKLNPLR 362 (510)
T ss_pred HHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchh--hhhhceeeecCccc
Confidence 556688888887664 367999999999999999999999999854 33332111111100000 0011122211 1
Q ss_pred CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEE
Q 029645 121 AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 160 (190)
Q Consensus 121 ~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~v 160 (190)
...+||+||||||++|||+|+.++++.|+++|++.+.+.+
T Consensus 363 ~~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri 402 (510)
T PRK07847 363 EVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRI 402 (510)
T ss_pred cccCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 2358999999999999999999999999999999877653
No 63
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.43 E-value=2.7e-12 Score=108.41 Aligned_cols=111 Identities=22% Similarity=0.291 Sum_probs=86.2
Q ss_pred CCEEEEeCCCChhhHHHHHHHhC-CCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHH
Q 029645 63 ISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (190)
Q Consensus 63 ~d~Iv~i~~gG~~~a~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl 141 (190)
-.+|+++..||...|..+|..|+ .|+.++.|++..... ...+.+. + ..+|++|+||||+++||.|+
T Consensus 180 ~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~-----------~~~~~~~-~-~v~g~~viiVDDii~TG~T~ 246 (330)
T PRK02812 180 DIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-----------AEVLNVI-G-DVKGKTAILVDDMIDTGGTI 246 (330)
T ss_pred CeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce-----------eeeEecc-c-cCCCCEEEEEccccCcHHHH
Confidence 35899999999999999999995 899888765532110 0011111 2 35899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 142 SAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 142 ~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
.++++.|++.|++.+.+++.|.....++.+++...++..++..+.
T Consensus 247 ~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id~iv~tnt 291 (330)
T PRK02812 247 CEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFEEVIVTNT 291 (330)
T ss_pred HHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCCCEEEEeCC
Confidence 999999999999999999988886666777776556777766555
No 64
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.40 E-value=8.2e-13 Score=116.22 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCceeeee--eeeecccceEEEecCC
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEA--YVLEYGTDRLEMHVGA 121 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 121 (190)
+....+++.||+... .++|+|+|+|..|...|..+|+.+|+|+.. +.|++.....+.... .+...-+..+... ..
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~-~~ 344 (475)
T PRK07631 267 TARKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPV-RG 344 (475)
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhc-cc
Confidence 455688888887654 368999999999999999999999999854 222221111111000 0000001123221 22
Q ss_pred CCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEE
Q 029645 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (190)
Q Consensus 122 ~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl 161 (190)
..+||+|+||||++|||+|+++++++|+++|++.+.+.+-
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~ 384 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRIS 384 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 3589999999999999999999999999999999877643
No 65
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.37 E-value=7.2e-12 Score=94.22 Aligned_cols=120 Identities=21% Similarity=0.281 Sum_probs=79.6
Q ss_pred HhcCHHHHHHHHHHHHHHhhc----CCCCEEEEeCCCChhhHHHHHHHhC------CCEEEEeccCCCCCceeeeeeeee
Q 029645 40 LLLDHKAFKDTVDIFVDRYRD----MGISVVAGIEARGFVFGPSIALAIG------AKFVPLRKPNKLPGEVISEAYVLE 109 (190)
Q Consensus 40 ~~~~~~~~~~~~~~la~~i~~----~~~d~Iv~i~~gG~~~a~~la~~L~------~p~~~~rk~~~~~~~~~~~~~~~~ 109 (190)
.+.|+..++.....++.++-+ .+--+++||.+||.++|..+++.+. +|+..+.- ..+...+...
T Consensus 5 ~ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDI------t~yRDDl~~~ 78 (179)
T COG2065 5 EILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDI------TLYRDDLTQK 78 (179)
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEe------EEeechhhhc
Confidence 456777777666666665533 2334789999999999999999873 35533210 0111111000
Q ss_pred cc-cceEEEe-cCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcC-CeEEEEEEEeecC
Q 029645 110 YG-TDRLEMH-VGAIEPGERALVIDDLVATGGTLSAAVRLLERMG-AEVVECACVVGLP 165 (190)
Q Consensus 110 ~~-~~~~~l~-~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~G-a~~i~v~vl~~~~ 165 (190)
.. .....-. ......||+|+|||||+.||+|+++|+++|...| +..+..+||++++
T Consensus 79 ~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRG 137 (179)
T COG2065 79 GPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRG 137 (179)
T ss_pred CccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCC
Confidence 00 0000000 0123589999999999999999999999999999 6889999999986
No 66
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.37 E-value=8.1e-12 Score=105.09 Aligned_cols=107 Identities=19% Similarity=0.139 Sum_probs=80.6
Q ss_pred CEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHH
Q 029645 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSA 143 (190)
Q Consensus 64 d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~ 143 (190)
.+|+++..||...+..++ ++.|+.++.|.+.. . ...........+|++|+|||||++||+|+.+
T Consensus 185 ~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~g--~------------~~~~~~~~~dv~gr~vlIVDDIidTG~Tl~~ 248 (326)
T PLN02297 185 IVIAFPDDGAWKRFHKQF--EHFPMVVCTKVREG--D------------KRIVRIKEGNPAGRHVVIVDDLVQSGGTLIE 248 (326)
T ss_pred cEEEecCccHHHHHHHHc--CCCCEEEEEeEECC--C------------ceEEEecccccCCCeEEEEecccCcHHHHHH
Confidence 489999999988876665 57899988776521 1 1111111223589999999999999999999
Q ss_pred HHHHHHHcCCeEEEEEEEeecCCccccccccC------CCeEEEEeccc
Q 029645 144 AVRLLERMGAEVVECACVVGLPEVRGQRRLDG------KPLYILVEPRL 186 (190)
Q Consensus 144 ~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~------~~~~sl~~~~~ 186 (190)
+++.|++.|++.+.+++.|.....++.+++.. .++..++.-++
T Consensus 249 aa~~L~~~Ga~~V~~~~THglfs~~a~~~l~~~~~~~~~~i~~iv~TdT 297 (326)
T PLN02297 249 CQKVLAAHGAAKVSAYVTHGVFPNESWERFTHDNGGPEAGFAYFWITDS 297 (326)
T ss_pred HHHHHHHCCCcEEEEEEECcccChhHHHHHHhcccccccCcCEEEEcCC
Confidence 99999999999999999999876666666653 35666665444
No 67
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.36 E-value=1.2e-11 Score=107.16 Aligned_cols=111 Identities=23% Similarity=0.332 Sum_probs=86.9
Q ss_pred CCEEEEeCCCChhhHHHHHHHhC------CCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccC
Q 029645 63 ISVVAGIEARGFVFGPSIALAIG------AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVA 136 (190)
Q Consensus 63 ~d~Iv~i~~gG~~~a~~la~~L~------~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvt 136 (190)
..+||++..||...|..+|..|+ .++.++.|.+...... ..+.+. + ..+|++|+|||||++
T Consensus 280 ~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v-----------~~~~lv-g-dV~Gk~vIIVDDIId 346 (439)
T PTZ00145 280 KPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEI-----------EKMDLV-G-NVYDSDVIIVDDMID 346 (439)
T ss_pred ccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCce-----------EEEecc-C-CCCCCEEEEEcceeC
Confidence 35899999999999999999997 6888877765322111 012221 2 358999999999999
Q ss_pred chHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 137 TGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 137 TG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
||+|+.++++.|++.||+.+.+++.|......+.+++...++..++.-++
T Consensus 347 TG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~IvvTdT 396 (439)
T PTZ00145 347 TSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIERIEASPLEEVVVTDT 396 (439)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHHHhcCCCCEEEEeCC
Confidence 99999999999999999999999999887666677777666777766554
No 68
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.25 E-value=3.6e-11 Score=93.00 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=79.7
Q ss_pred CEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCC----------ceeeee-ee------eeccc--ceEEEecCCCCC
Q 029645 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPG----------EVISEA-YV------LEYGT--DRLEMHVGAIEP 124 (190)
Q Consensus 64 d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~----------~~~~~~-~~------~~~~~--~~~~l~~~~~~~ 124 (190)
-+||+...||..-|+.+|+.|++.+..+.+.+.... ...... .. ....+ ..+.+. +. .+
T Consensus 5 aVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vV-GD-V~ 82 (184)
T PF14572_consen 5 AVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVV-GD-VK 82 (184)
T ss_dssp EEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEEE-S---T
T ss_pred CEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEE-EE-cc
Confidence 478999999999999999999998877654332100 000000 00 00000 011111 33 59
Q ss_pred CCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 125 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 125 gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
||.++||||+++||.|+..+++.|++.||..+.+++-|........+++++.++..++.-++
T Consensus 83 gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~vvvTnT 144 (184)
T PF14572_consen 83 GKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEVVVTNT 144 (184)
T ss_dssp TSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEEEEETT
T ss_pred CCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEEEEecc
Confidence 99999999999999999999999999999999999999997767777887778888876554
No 69
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.22 E-value=2.9e-11 Score=104.08 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE-EeccCCCCCceeeeeeeeecccceEEEecC---
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHVG--- 120 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 120 (190)
.....+++.|++... .+.|+|+|+|.+|.+.|...|+.+|+|+.. +-|++-....++.-.+ +.....+.+.-+
T Consensus 267 ~~R~~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q--~~R~~~Vr~KLnpvr 343 (470)
T COG0034 267 EARKRMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQ--ELREKGVRLKLNPVR 343 (470)
T ss_pred HHHHHHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcH--HHHHhhhhhhcCchH
Confidence 455678888887764 367999999999999999999999999854 2333322112221000 000111221111
Q ss_pred CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEE
Q 029645 121 AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 161 (190)
Q Consensus 121 ~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl 161 (190)
...+||+|+||||.+-.|+|++..+++|+++||+.+.+..-
T Consensus 344 ~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 344 EVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred HHhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 23699999999999999999999999999999999887643
No 70
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.19 E-value=2.2e-10 Score=91.10 Aligned_cols=97 Identities=24% Similarity=0.326 Sum_probs=71.0
Q ss_pred EEEEeCCCChhhHHHHHHHhC-CCEEEEeccCCCCCceeeeeeeeecccc-eEEEecCCCCCCCEEEEEcCccCchHHHH
Q 029645 65 VVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTD-RLEMHVGAIEPGERALVIDDLVATGGTLS 142 (190)
Q Consensus 65 ~Iv~i~~gG~~~a~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~ 142 (190)
++|++.++|+.++..+++.++ .++..+...+.. . .... ......+...+|++|||+||+++||+|+.
T Consensus 73 vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~--~---------t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~ 141 (209)
T PRK00129 73 VIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDE--E---------TLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAI 141 (209)
T ss_pred EEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCC--C---------CCCCEEEEeeCCCcCCCCEEEEECCcccchHHHH
Confidence 788999999999999999997 354444322210 0 0011 11111233458999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEEEeecCCcccccccc
Q 029645 143 AAVRLLERMGAEVVECACVVGLPEVRGQRRLD 174 (190)
Q Consensus 143 ~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~ 174 (190)
.+++.|++.|++.+.+++++..+ .|.+++.
T Consensus 142 ~ai~~L~~~G~~~I~~~~ll~~~--~gl~~l~ 171 (209)
T PRK00129 142 AAIDLLKKRGAKNIKVLCLVAAP--EGIKALE 171 (209)
T ss_pred HHHHHHHHcCCCEEEEEEEecCH--HHHHHHH
Confidence 99999999999999999998875 5666654
No 71
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.16 E-value=3e-10 Score=90.28 Aligned_cols=104 Identities=23% Similarity=0.266 Sum_probs=73.5
Q ss_pred CEEEEeCCCChhhHHHHHHHhC-CCEEEEeccCCCCCceeeeeeeeecccceE-EEecCCCCCCCEEEEEcCccCchHHH
Q 029645 64 SVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRL-EMHVGAIEPGERALVIDDLVATGGTL 141 (190)
Q Consensus 64 d~Iv~i~~gG~~~a~~la~~L~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~gk~VLlVDDvvtTG~Tl 141 (190)
-++++|.++|+.++..+.+.+. .++..+...+.. ....... ...-+...+|++||||||+++||+|+
T Consensus 70 i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~-----------~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl 138 (207)
T TIGR01091 70 IVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNE-----------ETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTM 138 (207)
T ss_pred EEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCC-----------CCCCCEEEEecCCCCCCCCEEEEECCCccchHHH
Confidence 4788899999999999999986 344443322210 0011111 11113345899999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEEEEeecCCcccccccc----CCCeEE
Q 029645 142 SAAVRLLERMGAEVVECACVVGLPEVRGQRRLD----GKPLYI 180 (190)
Q Consensus 142 ~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~----~~~~~s 180 (190)
.++++.|++.|++.+.+++++..+ .|.+++. ++.++.
T Consensus 139 ~~ai~~L~~~G~~~I~v~~ll~~~--~gl~~l~~~~p~v~i~~ 179 (207)
T TIGR01091 139 IAALDLLKKRGAKKIKVLSIVAAP--EGIEAVEKAHPDVDIYT 179 (207)
T ss_pred HHHHHHHHHcCCCEEEEEEEecCH--HHHHHHHHHCCCCEEEE
Confidence 999999999999999999998876 5666653 455553
No 72
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.15 E-value=6.4e-10 Score=87.07 Aligned_cols=116 Identities=25% Similarity=0.339 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhcC---CCCEEEEeCCCChhhHHHHHHHhCCCE--EEEeccCCCCCc-e----eeee------e------
Q 029645 49 DTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKF--VPLRKPNKLPGE-V----ISEA------Y------ 106 (190)
Q Consensus 49 ~~~~~la~~i~~~---~~d~Iv~i~~gG~~~a~~la~~L~~p~--~~~rk~~~~~~~-~----~~~~------~------ 106 (190)
..++.|+..+... +..+|+++|+||+++|..+|+.||.|+ +.+||-...... . +.+. +
T Consensus 9 dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~ 88 (220)
T COG1926 9 DAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSL 88 (220)
T ss_pred HHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhhc
Confidence 3444555544432 344899999999999999999999998 446765422110 0 0000 0
Q ss_pred eee--cc-----cceEEE-------ec--C-CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeec
Q 029645 107 VLE--YG-----TDRLEM-------HV--G-AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 164 (190)
Q Consensus 107 ~~~--~~-----~~~~~l-------~~--~-~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~ 164 (190)
..+ +- ...-++ .. + ...+|++|+||||-+.||.||.+++..+++.+++.+.+++-+.-
T Consensus 89 ~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p 163 (220)
T COG1926 89 GIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAP 163 (220)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCC
Confidence 000 00 000000 01 1 12589999999999999999999999999999999888777654
No 73
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=99.08 E-value=7.1e-10 Score=90.78 Aligned_cols=122 Identities=25% Similarity=0.287 Sum_probs=89.1
Q ss_pred cHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEE
Q 029645 37 ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLE 116 (190)
Q Consensus 37 ~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 116 (190)
+.+++..|..++.+.. .+.+.+.-+|+.+..||.--++.+|..|+..++.+.|.+.....+ ...+
T Consensus 142 Vdnly~~p~~l~~ir~----~~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~~~v----------~~~m- 206 (316)
T KOG1448|consen 142 VDNLYAEPAVLNYIRE----NIPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKANEV----------DIRM- 206 (316)
T ss_pred chhhccchHHHHHHHh----hCCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhccccc----------ceEE-
Confidence 6677788866554443 344445457888889999999999999998766544333211110 0011
Q ss_pred EecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccccc
Q 029645 117 MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD 174 (190)
Q Consensus 117 l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~ 174 (190)
+..+. .+||.++||||+++|++|+..+.+.|.+.||+++.+++-|........+++.
T Consensus 207 ~LVGD-v~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~ 263 (316)
T KOG1448|consen 207 VLVGD-VKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLN 263 (316)
T ss_pred EEEec-cCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhh
Confidence 12244 5899999999999999999999999999999999999999987666666665
No 74
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.05 E-value=2.2e-09 Score=81.48 Aligned_cols=125 Identities=16% Similarity=0.256 Sum_probs=86.5
Q ss_pred ceEEecHhHhcCHHHHHHHHHHHHHHhhcC---CCCEEEEeCCCChhhHHHHHHHhC-------CCEE--EEeccCCCCC
Q 029645 32 IMFQDITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIG-------AKFV--PLRKPNKLPG 99 (190)
Q Consensus 32 ~~~~d~~~~~~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~a~~la~~L~-------~p~~--~~rk~~~~~~ 99 (190)
..+-|++.++.-..+++.-.+++|..+.+. ++-+++++..||+.+-+.|-+.|. .|+. ++|-+
T Consensus 27 ~y~~Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~k----- 101 (216)
T KOG3367|consen 27 HYTGDLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAK----- 101 (216)
T ss_pred eecccccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehh-----
Confidence 344567766666677777777777666432 455789999999998888888863 2321 12211
Q ss_pred ceeeeeeeeecccceEEEe-cCC--CCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 100 EVISEAYVLEYGTDRLEMH-VGA--IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~-~~~--~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
+|........+.+- -+. -+.||+|||||||++||+||...++.+++.+++.+.++.|..+..
T Consensus 102 -----SY~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt 166 (216)
T KOG3367|consen 102 -----SYCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRT 166 (216)
T ss_pred -----hhcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeeccccc
Confidence 12222222223321 111 258999999999999999999999999999999999999998863
No 75
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.92 E-value=4.9e-08 Score=75.80 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=108.2
Q ss_pred CCCCCCceEEecHhHhc-----CHHHHHHHHHHHHHHhhcC--CCCEEEEeCCCChhhHHHHHHHhCCCEEEEeccC-CC
Q 029645 26 DFPIPGIMFQDITTLLL-----DHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPN-KL 97 (190)
Q Consensus 26 ~~~~~~~~~~d~~~~~~-----~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~-~~ 97 (190)
..|+.+++| ++++++ +|..+......|+.++.+. ++-++||...-+-.++..+++.++-...++...+ ..
T Consensus 12 ~NpKR~fLf--VSkVLGKHiPv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v 89 (191)
T PF15609_consen 12 RNPKRAFLF--VSKVLGKHIPVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPV 89 (191)
T ss_pred cCCCceeEE--EecccCcccCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccC
Confidence 357778888 666665 8999999999999988764 5678999999989999999999975434443222 23
Q ss_pred CCceeeeeeeeeccc--c-eEEEec-CCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCC-eEEEEEEEeecCCccccc-
Q 029645 98 PGEVISEAYVLEYGT--D-RLEMHV-GAIEPGERALVIDDLVATGGTLSAAVRLLERMGA-EVVECACVVGLPEVRGQR- 171 (190)
Q Consensus 98 ~~~~~~~~~~~~~~~--~-~~~l~~-~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga-~~i~v~vl~~~~~~~g~~- 171 (190)
++......+..++.. + .++... ..+...+.+++|||=+|||+|+..+++.|++.-. +.+.+++|.|-.....+.
T Consensus 90 ~~~~~~~~F~E~HSHAt~h~ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~~~~~~~ 169 (191)
T PF15609_consen 90 PGVPPLLEFEEEHSHATDHLLYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRSEEDRAR 169 (191)
T ss_pred CCCccceeeeccccccccceecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCCHHHHHH
Confidence 331111123333221 1 122111 1234577999999999999999999999988754 557777777764322222
Q ss_pred --cc---cCCCeEEEEeccccc
Q 029645 172 --RL---DGKPLYILVEPRLSV 188 (190)
Q Consensus 172 --~l---~~~~~~sl~~~~~~~ 188 (190)
.+ .|+|+..+.-+.+.|
T Consensus 170 ~~~~~~~lgi~i~~vsL~~G~~ 191 (191)
T PF15609_consen 170 FEALAEELGIPIDVVSLLSGEI 191 (191)
T ss_pred HHHHHHHcCCcEEEEEeecccC
Confidence 12 288998888777654
No 76
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.82 E-value=8.3e-09 Score=87.12 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE-eccCCCCCceeeeeeee-ecc-cceEEEecCC
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL-RKPNKLPGEVISEAYVL-EYG-TDRLEMHVGA 121 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~-rk~~~~~~~~~~~~~~~-~~~-~~~~~l~~~~ 121 (190)
......++.||..- ..+.|+|+++|.+|..-|...|...|+|+... -|++-....++.-+... ..+ ..++... ..
T Consensus 275 ~~R~~~G~~LA~e~-P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l-~~ 352 (474)
T KOG0572|consen 275 TVRLQCGEQLATEA-PVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPL-RQ 352 (474)
T ss_pred HHHHHHHhHhhhcC-CcccceEEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhcccc-hh
Confidence 34456677776622 34789999999999999999999999999653 23322111121100000 000 0112111 12
Q ss_pred CCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEE
Q 029645 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 159 (190)
Q Consensus 122 ~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~ 159 (190)
...||+|+||||.+..|+|+...+++|+++||+.+...
T Consensus 353 ~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~r 390 (474)
T KOG0572|consen 353 NFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIR 390 (474)
T ss_pred hcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEE
Confidence 35899999999999999999999999999999998765
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=98.25 E-value=1e-05 Score=65.79 Aligned_cols=49 Identities=39% Similarity=0.672 Sum_probs=40.1
Q ss_pred CCCEEEEEcCccCchHHHHHHHHHHHHcCCe--EEEEEEEeecCCcccccccc
Q 029645 124 PGERALVIDDLVATGGTLSAAVRLLERMGAE--VVECACVVGLPEVRGQRRLD 174 (190)
Q Consensus 124 ~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~--~i~v~vl~~~~~~~g~~~l~ 174 (190)
++++|||+||++.||+|+.++++.|++.|+. .+.+++++.-+ .|.+++.
T Consensus 156 ~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~--~Gl~~i~ 206 (244)
T PLN02541 156 EGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAP--PALKKLS 206 (244)
T ss_pred CCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECH--HHHHHHH
Confidence 4779999999999999999999999999987 56666666554 5766653
No 78
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.22 E-value=5e-06 Score=65.61 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=70.8
Q ss_pred EEEEeCCCChhhHHHHHHHhCC-CEEEE--eccCCCCCceeeeeeeeecccceEEEec-CCCCCCCEEEEEcCccCchHH
Q 029645 65 VVAGIEARGFVFGPSIALAIGA-KFVPL--RKPNKLPGEVISEAYVLEYGTDRLEMHV-GAIEPGERALVIDDLVATGGT 140 (190)
Q Consensus 65 ~Iv~i~~gG~~~a~~la~~L~~-p~~~~--rk~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~gk~VLlVDDvvtTG~T 140 (190)
++|+|.+.|..+...+...+.. ++-.+ .+... ..+...+..+ +...+++.|+|+|-+++||+|
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdee-------------t~~p~~yy~KLP~~~~~~~viv~DPMLATG~s 139 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEE-------------TLEPVLYYEKLPEDIDERTVIVLDPMLATGGS 139 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecCc-------------cCceehhHHhCCCcccCCeEEEECchhhccHh
Confidence 5688889999999999887531 22111 11110 0111111111 334689999999999999999
Q ss_pred HHHHHHHHHHc-CCeEEEEEEEeecCCcccccccc----CCCeEEEE
Q 029645 141 LSAAVRLLERM-GAEVVECACVVGLPEVRGQRRLD----GKPLYILV 182 (190)
Q Consensus 141 l~~~~~~L~~~-Ga~~i~v~vl~~~~~~~g~~~l~----~~~~~sl~ 182 (190)
+..+++.|++. |++.+.+.+++..+ .|.+++. +++++...
T Consensus 140 ~i~ai~~L~~~G~~~~I~~v~~vAap--eGi~~v~~~~p~v~I~ta~ 184 (210)
T COG0035 140 AIAAIDLLKKRGGPKNIKVVSLVAAP--EGIKAVEKAHPDVEIYTAA 184 (210)
T ss_pred HHHHHHHHHHhCCCceEEEEEEEecH--HHHHHHHHhCCCCeEEEEE
Confidence 99999999999 88899999999876 5666653 56666543
No 79
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.98 E-value=5.9e-05 Score=59.94 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=67.8
Q ss_pred CEEEEeCCCChhhHHHHHHHhC-CCEEEE--eccCCCCCceeeeeeeeecccceEEE-ecCCCCCCCEEEEEcCccCchH
Q 029645 64 SVVAGIEARGFVFGPSIALAIG-AKFVPL--RKPNKLPGEVISEAYVLEYGTDRLEM-HVGAIEPGERALVIDDLVATGG 139 (190)
Q Consensus 64 d~Iv~i~~gG~~~a~~la~~L~-~p~~~~--rk~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~gk~VLlVDDvvtTG~ 139 (190)
-++|++.++|..+...+...+- .++..+ .+.... .+..++. .-+...++++|+|+|-+++||+
T Consensus 69 i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t-------------~~p~~~y~~LP~~i~~~~VillDpmlaTG~ 135 (207)
T PF14681_consen 69 ICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEET-------------LEPVLYYNKLPEDIENRKVILLDPMLATGG 135 (207)
T ss_dssp EEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTT-------------SSEEEEEEE--TTGTTSEEEEEESEESSSH
T ss_pred EEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCc-------------cceeeeHhhCCCCccCCEEEEEeccccchh
Confidence 3788899999999999988873 344332 221110 1111111 1133348899999999999999
Q ss_pred HHHHHHHHHHHcCC--eEEEEEEEeecCCcccccccc----CCCeEEE
Q 029645 140 TLSAAVRLLERMGA--EVVECACVVGLPEVRGQRRLD----GKPLYIL 181 (190)
Q Consensus 140 Tl~~~~~~L~~~Ga--~~i~v~vl~~~~~~~g~~~l~----~~~~~sl 181 (190)
|+..+++.|++.|. +.+.+++++.-+ .|.+++. ++.++..
T Consensus 136 s~~~ai~~L~~~G~~~~~I~~v~~ias~--~Gl~~l~~~~P~v~I~ta 181 (207)
T PF14681_consen 136 SAIAAIEILKEHGVPEENIIIVSVIASP--EGLERLLKAFPDVRIYTA 181 (207)
T ss_dssp HHHHHHHHHHHTTG-GGEEEEEEEEEEH--HHHHHHHHHSTTSEEEEE
T ss_pred hHHHHHHHHHHcCCCcceEEEEEEEecH--HHHHHHHHhCCCeEEEEE
Confidence 99999999999986 566666666644 4666543 5555543
No 80
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=97.80 E-value=0.00054 Score=55.22 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=102.4
Q ss_pred hHHHHhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEEe
Q 029645 13 RLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (190)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~r 92 (190)
-|+-..+-|+...++| +.++-..|-+++ ++.+.++++..-+|++-..+...-|+..|..|.+.+..+.
T Consensus 130 tmdlhqkeiqgff~~p--------vdnlraspfllq----yiqe~ipdyrnavivaksp~~akka~syaerlrlglavih 197 (354)
T KOG1503|consen 130 TMDLHQKEIQGFFSIP--------VDNLRASPFLLQ----YIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIH 197 (354)
T ss_pred eehhhhHhhcceeccc--------ccccccCHHHHH----HHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEee
Confidence 3455555566666666 334445665544 4445555555567888777778889999999887776653
Q ss_pred ccCCC-----------CCceeeeee--eee------cccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCC
Q 029645 93 KPNKL-----------PGEVISEAY--VLE------YGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGA 153 (190)
Q Consensus 93 k~~~~-----------~~~~~~~~~--~~~------~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga 153 (190)
-..+. +........ ..+ ..+..+.+. +. ..|+-.++|||+++.-.+..++.+.|++.||
T Consensus 198 ge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppltvv-gd-vggriaimvddiiddvqsfvaaae~lkerga 275 (354)
T KOG1503|consen 198 GEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTVV-GD-VGGRIAIMVDDIIDDVQSFVAAAEVLKERGA 275 (354)
T ss_pred ccccccccccccCCcCCCCccccccCccccCchhhcccCCCeEEE-ec-cCceEEEEehhhHHhHHHHHHHHHHHHhcCc
Confidence 22111 011110000 000 000111111 12 4788999999999999999999999999999
Q ss_pred eEEEEEEEeecCCccccccccCCCeEEEEeccc
Q 029645 154 EVVECACVVGLPEVRGQRRLDGKPLYILVEPRL 186 (190)
Q Consensus 154 ~~i~v~vl~~~~~~~g~~~l~~~~~~sl~~~~~ 186 (190)
-.+.+.+-+..-+.++...+++.|+..++.-++
T Consensus 276 ykiyv~athgllssdapr~lees~idevvvtnt 308 (354)
T KOG1503|consen 276 YKIYVMATHGLLSSDAPRLLEESPIDEVVVTNT 308 (354)
T ss_pred eEEEEEeecccccccchhhhhcCCCceEEEecC
Confidence 999999998887667767788888887775544
No 81
>PF15610 PRTase_3: PRTase ComF-like
Probab=96.63 E-value=0.03 Score=46.04 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=65.3
Q ss_pred HhcCHHHHHHHHHHHHHHhhcC------CCCEEEEeCC--CChhhHHH-----HHHHh-------CC-CEEEEeccCCCC
Q 029645 40 LLLDHKAFKDTVDIFVDRYRDM------GISVVAGIEA--RGFVFGPS-----IALAI-------GA-KFVPLRKPNKLP 98 (190)
Q Consensus 40 ~~~~~~~~~~~~~~la~~i~~~------~~d~Iv~i~~--gG~~~a~~-----la~~L-------~~-p~~~~rk~~~~~ 98 (190)
-++|...++.+++.|++.+-+. .-|.||.++. +.+|-|+- ....| |. |+..++-.+..+
T Consensus 28 KfGd~~~A~~fg~~La~~fi~~~~~~~~~~d~iV~~~Sp~~~IPTAsn~L~~~Fv~~LNr~L~~~~~~~~~~~ki~R~~t 107 (274)
T PF15610_consen 28 KFGDDRVAEQFGRELADGFIAQFSNALLTHDQIVMMPSPYRSIPTASNVLCDHFVKELNRHLAHNGAPPVIEVKIHRNQT 107 (274)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhHhhhccCceEEEecCccccCccHHHHHHHHHHHHHHHHHHHcCCCcceEeeeccccC
Confidence 4689999999999998765321 3354555544 66554322 22223 23 333322122111
Q ss_pred Cceeeeeeeeec--------ccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeE
Q 029645 99 GEVISEAYVLEY--------GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEV 155 (190)
Q Consensus 99 ~~~~~~~~~~~~--------~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~ 155 (190)
..+.|..-. ..+...+.+.. .+|+.+|++|||..||++-..+...+++.|++-
T Consensus 108 ---y~~DYg~Ls~edR~~li~nd~y~ID~~~-l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~ 168 (274)
T PF15610_consen 108 ---YCEDYGNLSFEDRKSLISNDTYHIDKEF-LSGKHLIFLDDIKITGSHEDKVRKILKEYGLEN 168 (274)
T ss_pred ---cccccccCCHHhhhccccCCceEecHHH-hCCcEEEEeccEEecCcHHHHHHHHHHHcCccc
Confidence 111111110 11123333222 599999999999999999999999999999875
No 82
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=93.87 E-value=0.13 Score=41.69 Aligned_cols=148 Identities=15% Similarity=0.134 Sum_probs=83.1
Q ss_pred CceEEecHhHhcCHHHHHHHHHHHHHHhhcC--CCCE--EEEeCCCC-hhhHHHHHHHhCCCEEEEeccCCCCCceeeee
Q 029645 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISV--VAGIEARG-FVFGPSIALAIGAKFVPLRKPNKLPGEVISEA 105 (190)
Q Consensus 31 ~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~--~~d~--Iv~i~~gG-~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~ 105 (190)
.+.|.|++..- .+..+.-+++.++..+-+. .+|+ +++++..| ..-+...++..+++-+.-+..-. ... ..
T Consensus 62 ~di~~df~~~~-~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~---g~~-rk 136 (261)
T KOG1377|consen 62 SDIFFDFSLFN-SGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIK---GLN-RK 136 (261)
T ss_pred Cceeecccccc-cHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHH---HHh-hh
Confidence 46777776643 6778888888888877543 6899 99999777 55566777887776544211000 000 00
Q ss_pred eeeecccceEEEecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC---ccccc------ccc--
Q 029645 106 YVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE---VRGQR------RLD-- 174 (190)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~---~~g~~------~l~-- 174 (190)
....++..-+-+ ..-.++|.+|+.||+.++|.-+++. .+.-....+.++.+..++.+ ..|.+ .+.
T Consensus 137 ~~k~~~egG~ll--lAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ldrq~l~~tpgv~~d~~~d~lgqq 212 (261)
T KOG1377|consen 137 LLKDHGEGGVLL--LAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVALDRQELIMTPGVELDAAGDNLGQQ 212 (261)
T ss_pred ccccCCCCceEE--EEEeccCCceeehhHHHHHHHHHHh--hhchheeEEeeeeeeccHHhhccCCCCccchhhcchhhh
Confidence 000111111111 1224678899999966666666555 33333455666666666542 11211 222
Q ss_pred -CCCeEEEEecccc
Q 029645 175 -GKPLYILVEPRLS 187 (190)
Q Consensus 175 -~~~~~sl~~~~~~ 187 (190)
+.|.++++++..|
T Consensus 213 y~~p~e~I~~~~~d 226 (261)
T KOG1377|consen 213 YRLPVEVIVSLGSD 226 (261)
T ss_pred hcCcHHhheecCce
Confidence 5788887765543
No 83
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=90.95 E-value=1.4 Score=34.88 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=43.4
Q ss_pred CCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCe--EEEEEEEeecCCcccccc-ccCCCeEEEEe
Q 029645 121 AIEPGERALVIDDLVATGGTLSAAVRLLERMGAE--VVECACVVGLPEVRGQRR-LDGKPLYILVE 183 (190)
Q Consensus 121 ~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~--~i~v~vl~~~~~~~g~~~-l~~~~~~sl~~ 183 (190)
...--++|||.=-++.||.|+..|++.|++.|.. .+....|+-.+ .|-.. ....|...+++
T Consensus 185 pDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP--~gak~i~~~fP~itilt 248 (267)
T KOG1017|consen 185 PDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITP--TGAKNITRKFPYITILT 248 (267)
T ss_pred CcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecc--hhhHHHHHhCCeEEEEe
Confidence 3356789999999999999999999999999964 45544455443 33333 34566666654
No 84
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=88.57 E-value=7.2 Score=27.95 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=44.1
Q ss_pred CCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCc--hH--HHHHHHH
Q 029645 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GG--TLSAAVR 146 (190)
Q Consensus 71 ~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtT--G~--Tl~~~~~ 146 (190)
.+.-.+|..+|..||.++..+...+.. .|+..+.+ ....+|+.|+||-..... -. -+.-+++
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~F~------------dGE~~v~i--~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~ 72 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKRFP------------DGETYVRI--PESVRGKDVFIIQSTSPPVNDNLMELLLLID 72 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-T------------TS-EEEEE--SS--TTSEEEEE---SSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEcC------------CCCEEEEe--cccccCCceEEEEecCCchhHHHHHHHHHHH
Confidence 344578999999999988764332211 12223333 334589999999988875 22 3455678
Q ss_pred HHHHcCCeEEEEE
Q 029645 147 LLERMGAEVVECA 159 (190)
Q Consensus 147 ~L~~~Ga~~i~v~ 159 (190)
+++..|++.+.++
T Consensus 73 a~r~~~a~~i~~V 85 (116)
T PF13793_consen 73 ALRRAGAKRITLV 85 (116)
T ss_dssp HHHHTTBSEEEEE
T ss_pred HHHHcCCcEEEEe
Confidence 8899999876543
No 85
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=86.85 E-value=14 Score=31.43 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=48.9
Q ss_pred CCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCc-hHH---HHHHH
Q 029645 70 EARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---LSAAV 145 (190)
Q Consensus 70 ~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtT-G~T---l~~~~ 145 (190)
..+.-.+|..+|..||+++..+..++-.. |+..+.+ ....+|+.|+||-..... ... +.-++
T Consensus 27 g~~~~~la~~ia~~lg~~l~~~~~~~FpD------------GE~~v~i--~~~vrg~~V~ivqs~~~p~nd~l~eLll~~ 92 (330)
T PRK02812 27 GSSNPALAQEVARYLGMDLGPMIRKRFAD------------GELYVQI--QESIRGCDVYLIQPTCAPVNDHLMELLIMV 92 (330)
T ss_pred CCCCHHHHHHHHHHhCCCceeeEEEECCC------------CCEEEEe--CCCCCCCEEEEECCCCCCccHHHHHHHHHH
Confidence 45567899999999999876543332222 2222332 333589999999885433 222 45677
Q ss_pred HHHHHcCCeEEEEE
Q 029645 146 RLLERMGAEVVECA 159 (190)
Q Consensus 146 ~~L~~~Ga~~i~v~ 159 (190)
++++++|++.+.+.
T Consensus 93 ~alr~~ga~ri~~V 106 (330)
T PRK02812 93 DACRRASARQITAV 106 (330)
T ss_pred HHHHHhCCceEEEE
Confidence 88889999876543
No 86
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=85.48 E-value=15 Score=32.65 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=50.6
Q ss_pred CEEEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCc-h---H
Q 029645 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-G---G 139 (190)
Q Consensus 64 d~Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtT-G---~ 139 (190)
+.++-...+.-.+|..||..||+++..+..++-..++ ..+.+ ....+|+.|+||-..... - -
T Consensus 119 ~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE------------~~Vri--~e~VrG~dV~IVqS~~~pvNd~Lm 184 (439)
T PTZ00145 119 NAILFSGSSNPLLSKNIADHLGTILGRVHLKRFADGE------------VSMQF--LESIRGKDVYIIQPTCPPVNENLI 184 (439)
T ss_pred CeEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCC------------EEEEE--CCCcCCCeEEEEecCCCCCcHHHH
Confidence 3444444555689999999999987665433322222 22232 233589999998875432 1 1
Q ss_pred HHHHHHHHHHHcCCeEEEEE
Q 029645 140 TLSAAVRLLERMGAEVVECA 159 (190)
Q Consensus 140 Tl~~~~~~L~~~Ga~~i~v~ 159 (190)
-+.-++++++++||+.+.++
T Consensus 185 ELLllidAlr~agAkrItlV 204 (439)
T PTZ00145 185 ELLLMISTCRRASAKKITAV 204 (439)
T ss_pred HHHHHHHHHHHhccCeEEEE
Confidence 23456678889999876554
No 87
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=84.49 E-value=20 Score=30.60 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=49.1
Q ss_pred EEEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCc-hH---HH
Q 029645 66 VAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GG---TL 141 (190)
Q Consensus 66 Iv~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtT-G~---Tl 141 (190)
++-...+.-.+|..+|+.||+|+..+..++-.. |+..+.+ ....+|+.|+||-++... -. -+
T Consensus 11 ~i~~~~~~~~La~~ia~~lg~~l~~~~~~~Fpd------------GE~~v~i--~~~vrg~dV~ivqs~~~p~nd~l~eL 76 (332)
T PRK00553 11 VIFSLSKAKKLVDSICRKLSMKPGEIVIQKFAD------------GETYIRF--DESVRNKDVVIFQSTCSPVNDSLMEL 76 (332)
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEECCC------------CCEEEEE--CCCCCCCEEEEEcCCCCCCchHHHHH
Confidence 333334556899999999999987654333222 2222332 333589999998775432 11 14
Q ss_pred HHHHHHHHHcCCeEEEEE
Q 029645 142 SAAVRLLERMGAEVVECA 159 (190)
Q Consensus 142 ~~~~~~L~~~Ga~~i~v~ 159 (190)
.-++++++++|++.+.+.
T Consensus 77 ll~~~alr~~~a~~i~~V 94 (332)
T PRK00553 77 LIAIDALKRGSAKSITAI 94 (332)
T ss_pred HHHHHHHHHcCCCeEEEE
Confidence 556778889999865543
No 88
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=83.53 E-value=21 Score=29.96 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=48.1
Q ss_pred CCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchH---HHHHHHHH
Q 029645 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG---TLSAAVRL 147 (190)
Q Consensus 71 ~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~---Tl~~~~~~ 147 (190)
.+.-.+|..+|..||+|+..+...+-. .|+..+.+ ....+|+.|+||-....--. -+.-++++
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~F~------------dGE~~v~i--~~~v~g~~V~ivqs~~~~n~~l~elll~~~a 74 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHRFP------------DGESYVRL--DSPVAGRTVVLVCSLDRPDEKLLPLLFAAEA 74 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECC------------CCCEEEEE--CCCCCCCEEEEECCCCCCcHHHHHHHHHHHH
Confidence 344579999999999998664333221 13323333 23358999999988654212 24456778
Q ss_pred HHHcCCeEEEEE
Q 029645 148 LERMGAEVVECA 159 (190)
Q Consensus 148 L~~~Ga~~i~v~ 159 (190)
|+++|++.+.+.
T Consensus 75 lr~~~a~~i~~V 86 (301)
T PRK07199 75 ARELGARRVGLV 86 (301)
T ss_pred HHHcCCCeEEEE
Confidence 899999876543
No 89
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=82.32 E-value=20 Score=29.74 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=47.2
Q ss_pred CCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchH---HHHHHHHH
Q 029645 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG---TLSAAVRL 147 (190)
Q Consensus 71 ~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~---Tl~~~~~~ 147 (190)
.+.-.+|..+|..||.|+..+..++-.. |+..+.+. ...+|+.|+|+-..-.-.. -+.-++++
T Consensus 6 ~~~~~la~~ia~~l~~~~~~~~~~~Fpd------------GE~~v~i~--~~v~g~~v~i~~~~~~~~d~l~ell~~~~a 71 (285)
T PRK00934 6 SASQLLASEVARLLNTELALVETKRFPD------------GELYVRIL--GEIDGEDVVIISTTYPQDENLVELLLLIDA 71 (285)
T ss_pred CCCHHHHHHHHHHHCCceEeeEEEECCC------------CCEEEEEC--CCcCCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3445799999999999987654433222 22233332 2358899988876432222 24456788
Q ss_pred HHHcCCeEEEEE
Q 029645 148 LERMGAEVVECA 159 (190)
Q Consensus 148 L~~~Ga~~i~v~ 159 (190)
++++|++.+.+.
T Consensus 72 lr~~ga~~i~~v 83 (285)
T PRK00934 72 LRDEGAKSITLV 83 (285)
T ss_pred HHHcCCCeEEEE
Confidence 899999876543
No 90
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=81.93 E-value=29 Score=29.41 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=47.4
Q ss_pred CCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCc----hHHHHHHHH
Q 029645 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT----GGTLSAAVR 146 (190)
Q Consensus 71 ~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtT----G~Tl~~~~~ 146 (190)
.+.-.+|..+|..||+++..+...+-.. |+..+.+ ....+|+.|+||-..... =--+.-+++
T Consensus 12 ~~~~~la~~ia~~lg~~l~~~~~~~Fpd------------GE~~v~i--~~~vrg~dV~iv~s~~~~~nd~lmelll~~~ 77 (320)
T PRK02269 12 SSNKELAEKVAQEIGIELGKSSVRQFSD------------GEIQVNI--EESIRGHHVFILQSTSSPVNDNLMEILIMVD 77 (320)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCC------------CCEEEEE--CCCCCCCEEEEEecCCCCccchHHHHHHHHH
Confidence 4445799999999999876654332222 2222333 233589999998775321 123566778
Q ss_pred HHHHcCCeEEEEE
Q 029645 147 LLERMGAEVVECA 159 (190)
Q Consensus 147 ~L~~~Ga~~i~v~ 159 (190)
+|+++|++.+.+.
T Consensus 78 alr~~~a~~i~~V 90 (320)
T PRK02269 78 ALKRASAESINVV 90 (320)
T ss_pred HHHHhCCCeEEEE
Confidence 8899999876543
No 91
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=81.65 E-value=27 Score=29.45 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=46.3
Q ss_pred CCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCc-hH---HHHHHHH
Q 029645 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GG---TLSAAVR 146 (190)
Q Consensus 71 ~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtT-G~---Tl~~~~~ 146 (190)
.+.-.+|..+|..||.|+..+..++-.. |+..+.+ ....+|+.|+||=..... -. -+.-+++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~Fpd------------GE~~vri--~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~ 72 (309)
T PRK01259 7 NANPELAEKIAKYLGIPLGKASVGRFSD------------GEISVEI--NENVRGKDVFIIQSTCAPTNDNLMELLIMID 72 (309)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCC------------CCEEEEe--CCCCCCCEEEEECCCCCCCcHHHHHHHHHHH
Confidence 3445799999999999876543322222 2222333 233589999999665322 11 2456778
Q ss_pred HHHHcCCeEEEE
Q 029645 147 LLERMGAEVVEC 158 (190)
Q Consensus 147 ~L~~~Ga~~i~v 158 (190)
+++++|++.+.+
T Consensus 73 alr~~ga~~i~l 84 (309)
T PRK01259 73 ALKRASAGRITA 84 (309)
T ss_pred HHHHcCCceEEE
Confidence 889999986554
No 92
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=81.58 E-value=16 Score=30.77 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=44.2
Q ss_pred hhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCc--hHH--HHHHHHHHHH
Q 029645 75 VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GGT--LSAAVRLLER 150 (190)
Q Consensus 75 ~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtT--G~T--l~~~~~~L~~ 150 (190)
.+|..+|..||+|+..+..++-.. |+..+.+ ....+|+.|+||-..... -.. +.-+++++++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~Fpd------------GE~~v~i--~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~ 67 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFAD------------GEIYVQL--QESVRGCDVFLVQPTCPPANENLMELLIMIDACRR 67 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECCC------------CCEEEEE--CCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 478999999999987654333222 2222333 233488999999886522 222 4556788889
Q ss_pred cCCeEEEE
Q 029645 151 MGAEVVEC 158 (190)
Q Consensus 151 ~Ga~~i~v 158 (190)
+|++.+.+
T Consensus 68 ~~a~~i~~ 75 (302)
T PLN02369 68 ASAKRITA 75 (302)
T ss_pred cCCCeEEE
Confidence 99986644
No 93
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=80.76 E-value=32 Score=29.17 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=46.3
Q ss_pred CCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchH----HHHHHHH
Q 029645 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG----TLSAAVR 146 (190)
Q Consensus 71 ~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~----Tl~~~~~ 146 (190)
.+.-.+|..+|..||+|+..+..++-.. |+..+.+ ....+|+.|+||-....... -+.-+++
T Consensus 13 ~~~~~La~~ia~~lg~~l~~~~~~~Fpd------------GE~~v~i--~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~ 78 (319)
T PRK04923 13 NANKPLAQSICKELGVRMGKALVTRFSD------------GEVQVEI--EESVRRQEVFVIQPTCAPSAENLMELLVLID 78 (319)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCC------------CCEEEEE--CCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 4446899999999999977654333222 2222333 23347999999865432211 2445677
Q ss_pred HHHHcCCeEEEEE
Q 029645 147 LLERMGAEVVECA 159 (190)
Q Consensus 147 ~L~~~Ga~~i~v~ 159 (190)
+++++|++.+.+.
T Consensus 79 alr~~~a~~i~~V 91 (319)
T PRK04923 79 ALKRASAASVTAV 91 (319)
T ss_pred HHHHcCCcEEEEE
Confidence 8889999876543
No 94
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=80.34 E-value=18 Score=30.45 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=45.1
Q ss_pred CCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEE-cCccCc----hHHHHHHH
Q 029645 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVI-DDLVAT----GGTLSAAV 145 (190)
Q Consensus 71 ~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlV-DDvvtT----G~Tl~~~~ 145 (190)
.+.-.+|..+|..||.|+..+..++-.. |+..+.+ ....+|+.|+|+ -..... =--+.-++
T Consensus 7 ~~~~~la~~ia~~lg~~~~~~~~~~Fpd------------GE~~v~i--~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~ 72 (308)
T TIGR01251 7 SSNQELAQKVAKNLGLPLGDVEVKRFPD------------GELYVRI--NESVRGKDVFIIQQSTSAPVNDNLMELLIMI 72 (308)
T ss_pred CCCHHHHHHHHHHhCCeeeeeEEEECCC------------CCEEEEE--CCCCCCCeEEEEeCCCCCCccHHHHHHHHHH
Confidence 3445799999999999887654332222 2222333 233478889888 543211 12345667
Q ss_pred HHHHHcCCeEEEE
Q 029645 146 RLLERMGAEVVEC 158 (190)
Q Consensus 146 ~~L~~~Ga~~i~v 158 (190)
++++++|++.+.+
T Consensus 73 ~a~r~~ga~~i~~ 85 (308)
T TIGR01251 73 DALKRASAKSITA 85 (308)
T ss_pred HHHHHcCCCeEEE
Confidence 8888999986544
No 95
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=79.86 E-value=21 Score=30.03 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=43.8
Q ss_pred hHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCc--hH--HHHHHHHHHHHc
Q 029645 76 FGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GG--TLSAAVRLLERM 151 (190)
Q Consensus 76 ~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtT--G~--Tl~~~~~~L~~~ 151 (190)
+|..+|..||+++..+..++-.. |+..+.+ ....+|+.|+||--.... -. -+.-++++++++
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~D------------GE~~vri--~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~ 66 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFAN------------GEIYVRF--EESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA 66 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCC------------CCEEEEE--CCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc
Confidence 47889999999877654333222 2212222 233589999998765432 22 245677888999
Q ss_pred CCeEEEEE
Q 029645 152 GAEVVECA 159 (190)
Q Consensus 152 Ga~~i~v~ 159 (190)
|++.+.+.
T Consensus 67 ~a~~i~~V 74 (304)
T PRK03092 67 SAKRITVV 74 (304)
T ss_pred CCCeEEEE
Confidence 99876543
No 96
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=77.71 E-value=18 Score=30.73 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=48.9
Q ss_pred CCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchH----HHHHHHH
Q 029645 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG----TLSAAVR 146 (190)
Q Consensus 71 ~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~----Tl~~~~~ 146 (190)
.+.-.+|..+|..|+.|+..+.-++-.. | ++.+.-....+|+.|.|+........ -+.-+++
T Consensus 11 ~s~~~La~~ia~~l~~~l~~~~~~rF~D------------G--E~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~id 76 (314)
T COG0462 11 SSNPELAEKIAKRLGIPLGKVEVKRFPD------------G--EIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMID 76 (314)
T ss_pred CCCHHHHHHHHHHhCCCcccceeEEcCC------------C--cEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence 3444789999999999987643322211 2 22333234468999998776655333 2445678
Q ss_pred HHHHcCCeEEEEEE
Q 029645 147 LLERMGAEVVECAC 160 (190)
Q Consensus 147 ~L~~~Ga~~i~v~v 160 (190)
+++.+||+.+.+..
T Consensus 77 A~k~asA~~It~Vi 90 (314)
T COG0462 77 ALKRASAKRITAVI 90 (314)
T ss_pred HHHhcCCceEEEEe
Confidence 88999999877643
No 97
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=71.49 E-value=63 Score=27.44 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=47.0
Q ss_pred EEeCCCChhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCc-hH---HHH
Q 029645 67 AGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GG---TLS 142 (190)
Q Consensus 67 v~i~~gG~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtT-G~---Tl~ 142 (190)
+-...+.-.+|..+|..||+++..+..++-.. |+..+.+ ....+|+.|+||-..... -. -+.
T Consensus 12 i~~~~~~~~la~~ia~~lg~~l~~~~~~~Fpd------------GE~~v~i--~~~v~g~dV~ii~s~~~~~nd~l~eLl 77 (323)
T PRK02458 12 LFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSD------------GEIMINI--EESVRGDDIYIIQSTSFPVNDHLWELL 77 (323)
T ss_pred EEECCCCHHHHHHHHHHhCCceeeeEEEECCC------------CCEEEEe--cCCcCCCeEEEEecCCCCCchHHHHHH
Confidence 33334556899999999999876643332222 2222333 233478889888764322 11 234
Q ss_pred HHHHHHHHcCCeEEEEE
Q 029645 143 AAVRLLERMGAEVVECA 159 (190)
Q Consensus 143 ~~~~~L~~~Ga~~i~v~ 159 (190)
.++++++++|++.+.+.
T Consensus 78 l~~~alr~~~a~~i~lV 94 (323)
T PRK02458 78 IMIDACKRASANTVNVV 94 (323)
T ss_pred HHHHHHHHcCCceEEEE
Confidence 45677789998765543
No 98
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=61.81 E-value=30 Score=29.40 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=45.4
Q ss_pred CChhHHHHhhcccc-cCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHh-CCC
Q 029645 10 GDPRLQGISKAIRV-VPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI-GAK 87 (190)
Q Consensus 10 ~~~~~~~l~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L-~~p 87 (190)
+||-++...+.+.. +.++... ..-++..+--.|+..+..+++.+ ....+|+|+++.. +-|+.+..+. ++|
T Consensus 40 eHpaLd~~~~G~~~aLk~~G~~-n~~i~~~na~~~~~~a~~iarql----~~~~~dviv~i~t---p~Aq~~~s~~~~iP 111 (322)
T COG2984 40 EHPALDAAREGVKEALKDAGYK-NVKIDYQNAQGDLGTAAQIARQL----VGDKPDVIVAIAT---PAAQALVSATKTIP 111 (322)
T ss_pred cchhHHHHHHHHHHHHHhcCcc-CeEEEeecCCCChHHHHHHHHHh----hcCCCcEEEecCC---HHHHHHHHhcCCCC
Confidence 67777777777643 2222211 23345555556776666655554 4557799999876 5576666555 579
Q ss_pred EEEE
Q 029645 88 FVPL 91 (190)
Q Consensus 88 ~~~~ 91 (190)
+++.
T Consensus 112 VV~a 115 (322)
T COG2984 112 VVFA 115 (322)
T ss_pred EEEE
Confidence 8874
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=57.05 E-value=50 Score=30.68 Aligned_cols=50 Identities=18% Similarity=0.014 Sum_probs=35.5
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhh-HHHHHHHhCC--CEEE
Q 029645 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGA--KFVP 90 (190)
Q Consensus 41 ~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~-a~~la~~L~~--p~~~ 90 (190)
+..-..+..+.+.+.+.+.+.++|++|.|+.-||++ -..-++..|+ |+++
T Consensus 289 L~~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviy 341 (608)
T PRK01021 289 LLALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVH 341 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEE
Confidence 444455556667777777777999999999999986 2334456675 8765
No 100
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=56.86 E-value=1.3e+02 Score=25.89 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhH--HHHHHHhCCCEEEEec-cCCCCCceeeeeeeeecccc--eEEE
Q 029645 43 DHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG--PSIALAIGAKFVPLRK-PNKLPGEVISEAYVLEYGTD--RLEM 117 (190)
Q Consensus 43 ~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a--~~la~~L~~p~~~~rk-~~~~~~~~~~~~~~~~~~~~--~~~l 117 (190)
+++.....-+.+-+.+ ..++|.|++++.||++-. ...|..+|+|++..-- -|..+.-... ++.. ++-+ .+.+
T Consensus 77 ~g~e~~ra~e~~~~~~-~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElqMt-Tf~~-~g~~~tPlvi 153 (357)
T COG3535 77 NGDEAIRAFEVLEDYL-GKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQMT-TFYL-HGLPATPLVI 153 (357)
T ss_pred CcHHHHHHHHHHHHHh-CCceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceEEE-EEEE-cCCCCCceEE
Confidence 4454445555554444 457999999999999743 3456778999886421 1111111111 1111 1111 1111
Q ss_pred ecCCCCCCCEEEEEcCccCchHHHHHHHHHHHHcCCeE
Q 029645 118 HVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEV 155 (190)
Q Consensus 118 ~~~~~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~ 155 (190)
. ..+|..+++ -.++...+-+.+..+.-+.|+..
T Consensus 154 ~---d~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~ 186 (357)
T COG3535 154 C---DERGNRVII--ETVSNKWAERIARAATVEMGGSA 186 (357)
T ss_pred E---ecCCCEEEE--EeecchhHHHHHHHHHHHcCCeE
Confidence 1 136666666 88899999999999999999764
No 101
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=55.71 E-value=28 Score=25.22 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcc
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVR 168 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~ 168 (190)
.+|++++| +.+|++.++++..|.+.|++.+. +++|...+
T Consensus 10 l~~~~vlv----iGaGg~ar~v~~~L~~~g~~~i~---i~nRt~~r 48 (135)
T PF01488_consen 10 LKGKRVLV----IGAGGAARAVAAALAALGAKEIT---IVNRTPER 48 (135)
T ss_dssp GTTSEEEE----ESSSHHHHHHHHHHHHTTSSEEE---EEESSHHH
T ss_pred cCCCEEEE----ECCHHHHHHHHHHHHHcCCCEEE---EEECCHHH
Confidence 47999998 57899999999999999999664 56776443
No 102
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=52.86 E-value=1.6e+02 Score=25.75 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCCCCEEEEEcCccC--------------c-hHH---HHHHHHHHHHcCCeEEEEE
Q 029645 121 AIEPGERALVIDDLVA--------------T-GGT---LSAAVRLLERMGAEVVECA 159 (190)
Q Consensus 121 ~~~~gk~VLlVDDvvt--------------T-G~T---l~~~~~~L~~~Ga~~i~v~ 159 (190)
...+|+.|+||-.... . -.. +.-++++++ +|++.+.+.
T Consensus 73 ~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~V 128 (382)
T PRK06827 73 ESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVI 128 (382)
T ss_pred CCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEE
Confidence 3458999999998642 1 122 334788889 999876554
No 103
>PRK04195 replication factor C large subunit; Provisional
Probab=51.97 E-value=1.4e+02 Score=26.69 Aligned_cols=111 Identities=14% Similarity=0.240 Sum_probs=61.5
Q ss_pred cHhHhcCHHHHHHHHHHHHHHhhcC--CCCEEEEeCCCCh-hhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccc
Q 029645 37 ITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGF-VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTD 113 (190)
Q Consensus 37 ~~~~~~~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~ 113 (190)
+..+..+......+...+....... ..-++.|+|..|= .+|..+|..++.+++.+.-........... ....
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~-----~i~~ 87 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER-----VAGE 87 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH-----HHHH
Confidence 6677788888777777765544322 3346778887664 588999999998876653211000000000 0000
Q ss_pred eEEEecCCCC-CCCEEEEEcCccC-ch----HHHHHHHHHHHHcCCe
Q 029645 114 RLEMHVGAIE-PGERALVIDDLVA-TG----GTLSAAVRLLERMGAE 154 (190)
Q Consensus 114 ~~~l~~~~~~-~gk~VLlVDDvvt-TG----~Tl~~~~~~L~~~Ga~ 154 (190)
... ...+. ..++|+|+||+=. ++ ..+.+..+.+++.+..
T Consensus 88 ~~~--~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~ 132 (482)
T PRK04195 88 AAT--SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQP 132 (482)
T ss_pred hhc--cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCC
Confidence 000 01111 3578999998732 12 3467777777765543
No 104
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=51.85 E-value=1.5e+02 Score=25.25 Aligned_cols=82 Identities=7% Similarity=-0.046 Sum_probs=48.9
Q ss_pred EEEeCCCChhhHHHHHHHh-CCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccCchHH---H
Q 029645 66 VAGIEARGFVFGPSIALAI-GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGT---L 141 (190)
Q Consensus 66 Iv~i~~gG~~~a~~la~~L-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvtTG~T---l 141 (190)
++=...+.-.+|..+|..+ |+|+..+..++-.. |+..+.+......+|+.|+||=-.... .- +
T Consensus 18 ~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpD------------GE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmEL 84 (326)
T PLN02297 18 HLFYCEETEELARKIAAESDAIELGSINWRKFPD------------GFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQ 84 (326)
T ss_pred EEEECCCCHHHHHHHHHHhCCCceeeeEEEECCC------------CCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHH
Confidence 3333345568999999996 89887654433222 222333332334589999998764433 22 2
Q ss_pred HHHHHHHHHcCCeEEEEEE
Q 029645 142 SAAVRLLERMGAEVVECAC 160 (190)
Q Consensus 142 ~~~~~~L~~~Ga~~i~v~v 160 (190)
.-++++|++.|++.+.+..
T Consensus 85 Ll~~dAlr~~ga~~i~~Vi 103 (326)
T PLN02297 85 LSVIYALPKLFVASFTLVL 103 (326)
T ss_pred HHHHHHHHHcCCCEEEEEe
Confidence 3456677899998766543
No 105
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=51.11 E-value=1.2e+02 Score=24.79 Aligned_cols=113 Identities=9% Similarity=0.139 Sum_probs=49.2
Q ss_pred ecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHh-C-CCEEEEeccCCCCCceeeeeeeeecccc
Q 029645 36 DITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI-G-AKFVPLRKPNKLPGEVISEAYVLEYGTD 113 (190)
Q Consensus 36 d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L-~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~ 113 (190)
+..+--.|+..+..+++ .+...++|+|+++.. +-+..++..+ + +|+++.--......... .+. .....
T Consensus 37 ~~~~a~~d~~~~~~~~~----~l~~~~~DlIi~~gt---~aa~~~~~~~~~~iPVVf~~V~dp~~~~l~-~~~--~~~~~ 106 (294)
T PF04392_consen 37 EYKNAEGDPEKLRQIAR----KLKAQKPDLIIAIGT---PAAQALAKHLKDDIPVVFCGVSDPVGAGLV-DSL--DRPGK 106 (294)
T ss_dssp EEEE-TT-HHHHHHHHH----HHCCTS-SEEEEESH---HHHHHHHHH-SS-S-EEEECES-TTTTTS--S-S--SS--S
T ss_pred EEecCCCCHHHHHHHHH----HHhcCCCCEEEEeCc---HHHHHHHHhcCCCcEEEEEeccChhhhhcc-ccc--cCCCC
Confidence 33343456665554444 455568999999854 3345555555 4 79887532110000000 000 00000
Q ss_pred eEE-Eec-C----------CCC-CCCEE-EEEcCccCc-hHHHHHHHHHHHHcCCeEEEE
Q 029645 114 RLE-MHV-G----------AIE-PGERA-LVIDDLVAT-GGTLSAAVRLLERMGAEVVEC 158 (190)
Q Consensus 114 ~~~-l~~-~----------~~~-~gk~V-LlVDDvvtT-G~Tl~~~~~~L~~~Ga~~i~v 158 (190)
.+. +.. . .+. .-++| +|.|+--++ ....+.+.+..++.|.+.+..
T Consensus 107 nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~ 166 (294)
T PF04392_consen 107 NVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEI 166 (294)
T ss_dssp SEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEE
Confidence 110 000 0 112 35788 566766553 355667777778888776543
No 106
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=47.90 E-value=57 Score=27.45 Aligned_cols=43 Identities=23% Similarity=0.166 Sum_probs=38.7
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecC
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 165 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~ 165 (190)
+.|++|+||--=-.......++.+.|+.+|+.+.+...|-+..
T Consensus 81 L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~ 123 (308)
T PF11382_consen 81 LTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKF 123 (308)
T ss_pred cCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhh
Confidence 5899999999777788999999999999999999999888774
No 107
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=44.32 E-value=27 Score=26.91 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=22.0
Q ss_pred CCCEEEEEcCccCchHHHHHHH-HHHHHcCCeEEEEEEEeecC
Q 029645 124 PGERALVIDDLVATGGTLSAAV-RLLERMGAEVVECACVVGLP 165 (190)
Q Consensus 124 ~gk~VLlVDDvvtTG~Tl~~~~-~~L~~~Ga~~i~v~vl~~~~ 165 (190)
.|. =+||||++.++.-+.... ++|. |..+..+.+.|...
T Consensus 82 aG~-~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cple 121 (174)
T PF07931_consen 82 AGN-NVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLE 121 (174)
T ss_dssp TT--EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HH
T ss_pred CCC-CEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHH
Confidence 454 467899999998766666 6665 56665555566543
No 108
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=44.31 E-value=51 Score=21.22 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeE
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEV 155 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~ 155 (190)
.+++.|++++ .+|.....+...|++.|-+.
T Consensus 54 ~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~ 83 (100)
T smart00450 54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKN 83 (100)
T ss_pred CCCCeEEEEe---CCCcHHHHHHHHHHHcCCCc
Confidence 4678899998 67888899999999999875
No 109
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=43.20 E-value=62 Score=20.53 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.4
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEE
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~ 157 (190)
.+++.|+++++- |.....+...|++.|...+.
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~ 79 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVY 79 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEE
Confidence 467888888876 77888899999999866543
No 110
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.81 E-value=73 Score=19.65 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=27.2
Q ss_pred EEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEee
Q 029645 127 RALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 163 (190)
Q Consensus 127 ~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~ 163 (190)
.++|+.++ ||.-+...+..+++.|..+..-+++..
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvlT~ 36 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVLTP 36 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEECC
Confidence 46777777 889999999999999986555555543
No 111
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=42.21 E-value=58 Score=28.19 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCCEEEEeCCCC-hhhHHHHHHHhCCCEEEEe
Q 029645 52 DIFVDRYRDMGISVVAGIEARG-FVFGPSIALAIGAKFVPLR 92 (190)
Q Consensus 52 ~~la~~i~~~~~d~Iv~i~~gG-~~~a~~la~~L~~p~~~~r 92 (190)
+.+.....+.++|+|+||-.|- +..|..+|..+++|++.+-
T Consensus 74 ~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvP 115 (360)
T COG0371 74 ERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISVP 115 (360)
T ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCCCEEEec
Confidence 3333334334689999998665 4689999999999998763
No 112
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=42.06 E-value=90 Score=27.11 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=34.1
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhH-HHHHHHhCCC--EEE
Q 029645 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG-PSIALAIGAK--FVP 90 (190)
Q Consensus 41 ~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a-~~la~~L~~p--~~~ 90 (190)
+..-..+..+.+.+.+.+...++|++|.|+.-||++- ..-++..+++ +++
T Consensus 61 l~~l~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viy 113 (373)
T PF02684_consen 61 LKKLPKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIY 113 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEE
Confidence 3444555566677777777779999999999999862 2233455666 544
No 113
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=41.81 E-value=50 Score=21.89 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=24.7
Q ss_pred CEEEEEcCccCchHHHHHHHHHHHHc-C-CeEEEEEE
Q 029645 126 ERALVIDDLVATGGTLSAAVRLLERM-G-AEVVECAC 160 (190)
Q Consensus 126 k~VLlVDDvvtTG~Tl~~~~~~L~~~-G-a~~i~v~v 160 (190)
..+.+++|.-.+=.++.++++.+++. + .+++.++.
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 34777788999999999999999887 3 44544444
No 114
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=41.60 E-value=75 Score=23.80 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeC-CCChhhHHHHHHHhCCCEEE
Q 029645 48 KDTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 48 ~~~~~~la~~i~~~~~d~Iv~i~-~gG~~~a~~la~~L~~p~~~ 90 (190)
...++.+++.+.+.++++|+... ..|-.++..+|..|+.|++.
T Consensus 69 ~~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 69 EPYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCcee
Confidence 35556666666555788777654 56778999999999998754
No 115
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.36 E-value=88 Score=26.87 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=43.7
Q ss_pred CCChhHHHHhhccccc-CCCCC-CCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEE-----EeCCCChhhHHHHH
Q 029645 9 RGDPRLQGISKAIRVV-PDFPI-PGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVA-----GIEARGFVFGPSIA 81 (190)
Q Consensus 9 ~~~~~~~~l~~~~~~~-~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv-----~i~~gG~~~a~~la 81 (190)
++..+|++|++..|.+ |+.|. |...+.-+....++-.+ + =++.+.+.. +.|-+| |-++||..++ ++
T Consensus 235 nk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal-~-QAk~F~eav---~l~GiIlTKlDgtAKGG~il~--I~ 307 (340)
T COG0552 235 NKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL-S-QAKIFNEAV---GLDGIILTKLDGTAKGGIILS--IA 307 (340)
T ss_pred CchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH-H-HHHHHHHhc---CCceEEEEecccCCCcceeee--HH
Confidence 5678999999988876 55542 22233222222233222 1 123332222 345333 4468998885 88
Q ss_pred HHhCCCEEEEe
Q 029645 82 LAIGAKFVPLR 92 (190)
Q Consensus 82 ~~L~~p~~~~r 92 (190)
+.+++|+.++.
T Consensus 308 ~~l~~PI~fiG 318 (340)
T COG0552 308 YELGIPIKFIG 318 (340)
T ss_pred HHhCCCEEEEe
Confidence 99999988763
No 116
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=40.82 E-value=53 Score=26.02 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccccc--CCCeEEEE
Q 029645 136 ATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD--GKPLYILV 182 (190)
Q Consensus 136 tTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~--~~~~~sl~ 182 (190)
.+|+.+.+.++.+++......-++++.++++-.+.+... |+|++..-
T Consensus 8 g~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~ 56 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYP 56 (207)
T ss_pred CCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEec
Confidence 468899999999988876555577788876555544433 78887543
No 117
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=39.79 E-value=83 Score=25.43 Aligned_cols=48 Identities=10% Similarity=0.149 Sum_probs=36.1
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 41 ~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
++.-+-+..+++.|+++++....+ |.++|.+ ..+..+|..+|+|+..+
T Consensus 27 LGTGSTv~~~i~~L~~~~~~~~l~-i~~VptS--~~t~~~a~~~Gipl~~l 74 (228)
T PRK13978 27 IGTGSTMELLLPQMAQLIKERGYN-ITGVCTS--NKIAFLAKELGIKICEI 74 (228)
T ss_pred eCchHHHHHHHHHHHHHhhccCcc-EEEEeCc--HHHHHHHHHcCCcEech
Confidence 456777888889999888644444 6777775 56678899999998765
No 118
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=39.75 E-value=72 Score=24.93 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCC----ChhhHHHHHHHhCCCEEE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEAR----GFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~g----G~~~a~~la~~L~~p~~~ 90 (190)
..++.+++.+.+.++++|+...+. |-.++..+|..|+.|++.
T Consensus 95 ~~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 95 ATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 445555555555568888877644 779999999999998753
No 119
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=39.15 E-value=65 Score=21.36 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=23.2
Q ss_pred CCCEEEEEcCccCchHHHHHHHHHHHHcCCeEE
Q 029645 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVV 156 (190)
Q Consensus 124 ~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i 156 (190)
+++.|+++++ +|.+...+...|+..|-..+
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v 84 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPV 84 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCE
Confidence 5778999875 67777788888899997643
No 120
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=38.05 E-value=1.3e+02 Score=24.03 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=51.8
Q ss_pred CCCCChhHHHHhhcccccCCCCCCCceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCC-CC---------hhh
Q 029645 7 GLRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEA-RG---------FVF 76 (190)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~-gG---------~~~ 76 (190)
.+.....++++.+..+..+-||.+.+.|.++.. ......-.+++.+. .++.+|++=+. ++ .++
T Consensus 119 ~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la--~~QKQRVaLARALI-----L~P~iIIaDeAl~~LD~smrsQl~NL 191 (267)
T COG4167 119 DLEPEQRRKQIFETLRMVGLLPDHANYYPHMLA--PGQKQRVALARALI-----LRPKIIIADEALASLDMSMRSQLINL 191 (267)
T ss_pred cCChHHHHHHHHHHHHHhccCccccccchhhcC--chhHHHHHHHHHHh-----cCCcEEEehhhhhhccHHHHHHHHHH
Confidence 466677899999999999999988888755433 23333334444432 25666776543 33 245
Q ss_pred HHHHHHHhCCCEEEEe
Q 029645 77 GPSIALAIGAKFVPLR 92 (190)
Q Consensus 77 a~~la~~L~~p~~~~r 92 (190)
...+.+.+|+.|+++.
T Consensus 192 ~LeLQek~GiSyiYV~ 207 (267)
T COG4167 192 MLELQEKQGISYIYVT 207 (267)
T ss_pred HHHHHHHhCceEEEEe
Confidence 6677778888888753
No 121
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=37.72 E-value=64 Score=21.13 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEE
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVV 156 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i 156 (190)
.+++.|+++.. +|.+...+...|+..|...+
T Consensus 54 ~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v 84 (96)
T cd01444 54 DRDRPVVVYCY---HGNSSAQLAQALREAGFTDV 84 (96)
T ss_pred CCCCCEEEEeC---CCChHHHHHHHHHHcCCceE
Confidence 36778888877 88899999999999997653
No 122
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=37.66 E-value=80 Score=27.58 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCChhh--HHHHHHHhC--CCEEE
Q 029645 48 KDTVDIFVDRYRDMGISVVAGIEARGFVF--GPSIALAIG--AKFVP 90 (190)
Q Consensus 48 ~~~~~~la~~i~~~~~d~Iv~i~~gG~~~--a~~la~~L~--~p~~~ 90 (190)
-...+.++..+...++|++|+|..-||++ +..+ +..+ +|.++
T Consensus 71 lk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~l-rk~~p~i~iih 116 (381)
T COG0763 71 LKIRRELVRYILANKPDVLILIDSPDFNLRVAKKL-RKAGPKIKIIH 116 (381)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHH-HHhCCCCCeEE
Confidence 34445555666567899999999999986 3333 2334 66544
No 123
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=37.47 E-value=95 Score=21.15 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=17.3
Q ss_pred CCCEEEEEcCccCchHHHHHHHHHHHHcC
Q 029645 124 PGERALVIDDLVATGGTLSAAVRLLERMG 152 (190)
Q Consensus 124 ~gk~VLlVDDvvtTG~Tl~~~~~~L~~~G 152 (190)
.+.+||+||| .-.........|...|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 5678999999 3344555555666666
No 124
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=37.17 E-value=1.1e+02 Score=23.78 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 43 DHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 43 ~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
.|..+-.....+.+.... +..++||-..|||. |..+|..+++|.+.+
T Consensus 41 ~p~~a~~~l~~~i~~~~~-~~~~liGSSlGG~~-A~~La~~~~~~avLi 87 (187)
T PF05728_consen 41 FPEEAIAQLEQLIEELKP-ENVVLIGSSLGGFY-ATYLAERYGLPAVLI 87 (187)
T ss_pred CHHHHHHHHHHHHHhCCC-CCeEEEEEChHHHH-HHHHHHHhCCCEEEE
Confidence 455444333444333322 22589999999965 668899999998665
No 125
>PRK12342 hypothetical protein; Provisional
Probab=36.42 E-value=1.4e+02 Score=24.44 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeC----CCChhhHHHHHHHhCCCEEE
Q 029645 48 KDTVDIFVDRYRDMGISVVAGIE----ARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 48 ~~~~~~la~~i~~~~~d~Iv~i~----~gG~~~a~~la~~L~~p~~~ 90 (190)
...++.|+..++...+|+|++=. ...-..+..+|..||.|++.
T Consensus 95 ~ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 95 LDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 34556666666555699887643 22235678999999999864
No 126
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=35.99 E-value=48 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=32.1
Q ss_pred CchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccccccc--CCCeEEE
Q 029645 136 ATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLD--GKPLYIL 181 (190)
Q Consensus 136 tTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~--~~~~~sl 181 (190)
.+|+.+.+.+++++.......-++++.++++--+.++.. |+|...+
T Consensus 9 G~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~ 56 (200)
T COG0299 9 GNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVL 56 (200)
T ss_pred CCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEe
Confidence 578999999999995544444466788887766666654 6666544
No 127
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=35.92 E-value=90 Score=26.93 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=38.7
Q ss_pred CEEEEEcCccCc-----hHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCC-CeEEEEecc
Q 029645 126 ERALVIDDLVAT-----GGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGK-PLYILVEPR 185 (190)
Q Consensus 126 k~VLlVDDvvtT-----G~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~-~~~sl~~~~ 185 (190)
+.+||.|..+.+ +.++..+++..++.|++++-+-..+. +.++|..+ .+-+++.++
T Consensus 290 e~LLv~De~lr~~~~~~re~~~~ll~~ve~~ggkV~Ivs~~he-----~Ge~Lk~lGGiaaILRf~ 350 (352)
T COG1537 290 ETLLVTDELLRSDDVEEREDVEELLEEVESMGGKVVIVSTEHE-----PGERLKALGGIAAILRFP 350 (352)
T ss_pred eeEEeehhhhcccchhhHHHHHHHHHHHHHcCCeEEEEecCCc-----chHHHHhccCeEEEEEec
Confidence 579999999988 68999999999999999765544443 33454311 355665543
No 128
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=35.82 E-value=82 Score=25.96 Aligned_cols=37 Identities=38% Similarity=0.479 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
.+|++|+|+ .+|++.++++..|.+.|++.+. ++++..
T Consensus 123 ~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~---I~nRt~ 159 (282)
T TIGR01809 123 LAGFRGLVI----GAGGTSRAAVYALASLGVTDIT---VINRNP 159 (282)
T ss_pred cCCceEEEE----cCcHHHHHHHHHHHHcCCCeEE---EEeCCH
Confidence 468899874 8999999999999999987655 456653
No 129
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=35.32 E-value=77 Score=26.00 Aligned_cols=43 Identities=7% Similarity=0.083 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeC----CCChhhHHHHHHHhCCCEEE
Q 029645 48 KDTVDIFVDRYRDMGISVVAGIE----ARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 48 ~~~~~~la~~i~~~~~d~Iv~i~----~gG~~~a~~la~~L~~p~~~ 90 (190)
...+..|+..+++.++|+|++=. ...-....++|..||.|++.
T Consensus 98 ~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 98 QQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 35566666666655799887643 33335678999999999864
No 130
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=1.3e+02 Score=27.02 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=51.4
Q ss_pred cHhHhcCHHHHHHHHHHHHHHhhcCC-----------CCEEEEeCCCC-hhhHHHHHHHhCCCEEEEeccCCCCCceeee
Q 029645 37 ITTLLLDHKAFKDTVDIFVDRYRDMG-----------ISVVAGIEARG-FVFGPSIALAIGAKFVPLRKPNKLPGEVISE 104 (190)
Q Consensus 37 ~~~~~~~~~~~~~~~~~la~~i~~~~-----------~d~Iv~i~~gG-~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~ 104 (190)
+..+.+||+.-+.+.+-+..-++..+ --+..|||..| -.+-+++|-+|+..+..+.=...
T Consensus 200 F~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-------- 271 (457)
T KOG0743|consen 200 FETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-------- 271 (457)
T ss_pred ccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc--------
Confidence 45667899998888888876554321 12566777555 45677889998876544311000
Q ss_pred eeeeecccceEEEecC-CCCCCCEEEEEcCccCc
Q 029645 105 AYVLEYGTDRLEMHVG-AIEPGERALVIDDLVAT 137 (190)
Q Consensus 105 ~~~~~~~~~~~~l~~~-~~~~gk~VLlVDDvvtT 137 (190)
..... +.+= ...+++.||||+||=.+
T Consensus 272 -----~~n~d--Lr~LL~~t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 272 -----KLDSD--LRHLLLATPNKSILLIEDIDCS 298 (457)
T ss_pred -----cCcHH--HHHHHHhCCCCcEEEEeecccc
Confidence 00000 1000 11478999999999665
No 131
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=33.84 E-value=1.4e+02 Score=25.69 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCCChhhHH-HHHHHhCCCEEEE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEARGFVFGP-SIALAIGAKFVPL 91 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~-~la~~L~~p~~~~ 91 (190)
.........+++.++|+|+++..-|+++.. .-|+.+++|+++.
T Consensus 76 ~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 76 KIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 334444455666789999999987877432 2456779998764
No 132
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=33.50 E-value=64 Score=23.94 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCEEEEeC-CCChhhHHHHHHHhCCCEEE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~-~gG~~~a~~la~~L~~p~~~ 90 (190)
..++.+++.+++.++++|+... ..|-.++..+|..|+.|++.
T Consensus 77 ~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 77 AYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 4555555555556788776654 56667999999999998864
No 133
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=32.98 E-value=1.3e+02 Score=25.42 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHhCCCEEEEe
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~r 92 (190)
..++.+++.+++.++|.||++-.|.. ..|..+|..+++|++.+-
T Consensus 64 ~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~p~i~IP 108 (337)
T cd08177 64 EVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGLPIIAIP 108 (337)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcCCEEEEc
Confidence 35566666666668999999987654 578888888899987763
No 134
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=32.78 E-value=17 Score=21.38 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.2
Q ss_pred CccCchHHHHHHHHHHHHc
Q 029645 133 DLVATGGTLSAAVRLLERM 151 (190)
Q Consensus 133 DvvtTG~Tl~~~~~~L~~~ 151 (190)
.+.|.|.|+.++++.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5679999999999988764
No 135
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=32.37 E-value=19 Score=28.61 Aligned_cols=18 Identities=39% Similarity=0.363 Sum_probs=13.5
Q ss_pred cCccCchHHHHHHHHHHHHcCCeEE
Q 029645 132 DDLVATGGTLSAAVRLLERMGAEVV 156 (190)
Q Consensus 132 DDvvtTG~Tl~~~~~~L~~~Ga~~i 156 (190)
=|++.||+|++ .+|.+++
T Consensus 149 vDiv~TG~TLr-------~NgL~~~ 166 (204)
T PRK13584 149 VDIVQTGTTLK-------ANGLVEK 166 (204)
T ss_pred EEEECccHHHH-------HCCCEEE
Confidence 38999999975 5676654
No 136
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=31.14 E-value=1.2e+02 Score=22.95 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcCCCCEEEEeC-CCChhhHHHHHHHhCCCEEE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~-~gG~~~a~~la~~L~~p~~~ 90 (190)
..++.+++.+.+.++++|+... ..|-.++..+|..|+.|++.
T Consensus 78 ~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 78 ATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 4455555555555688776654 56778999999999998754
No 137
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=30.97 E-value=1.4e+02 Score=25.28 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHhCCCEEEE
Q 029645 51 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 91 (190)
Q Consensus 51 ~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~ 91 (190)
++.+.+.+++.++|.||++-.|.. ..|..+|..+++|++.+
T Consensus 65 v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~V 106 (347)
T cd08172 65 IERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGVPVITV 106 (347)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEe
Confidence 344445555567899999987654 57888888889998775
No 138
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=30.65 E-value=23 Score=28.36 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=13.1
Q ss_pred CccCchHHHHHHHHHHHHcCCeEE
Q 029645 133 DLVATGGTLSAAVRLLERMGAEVV 156 (190)
Q Consensus 133 DvvtTG~Tl~~~~~~L~~~Ga~~i 156 (190)
|++.||+|++ ++|.+++
T Consensus 160 DivsTG~TLr-------~NgL~~i 176 (215)
T PRK01686 160 DIVETGNTLR-------ANGLVEV 176 (215)
T ss_pred EeecChHHHH-------HCcCEEe
Confidence 8999999985 5666654
No 139
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=30.19 E-value=1.4e+02 Score=24.97 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHh--CCCEEEEe
Q 029645 50 TVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAI--GAKFVPLR 92 (190)
Q Consensus 50 ~~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L--~~p~~~~r 92 (190)
.++.+++.+++.++|.||++-.|.. ..|..+|..+ ++|++.+-
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iP 111 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNRGLPIIIVP 111 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcCCCCEEEEe
Confidence 3344445555567899999987654 5788888887 88987653
No 140
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=29.98 E-value=56 Score=26.69 Aligned_cols=42 Identities=14% Similarity=0.335 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHhCCCEEEEec
Q 029645 52 DIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRK 93 (190)
Q Consensus 52 ~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~rk 93 (190)
..+...++..+.|+|+++-.|-. .++..+|..+++|++.+-.
T Consensus 65 ~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~~p~isVPT 107 (250)
T PF13685_consen 65 EKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELGIPFISVPT 107 (250)
T ss_dssp HHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT--EEEEES
T ss_pred HHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcCCCEEEecc
Confidence 33444444457889999977654 5899999999999988643
No 141
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.58 E-value=2.5e+02 Score=23.32 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=34.8
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE
Q 029645 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 41 ~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~ 90 (190)
-.+|......++.+.+ +.+++.|++....+...+..++...++|++.
T Consensus 53 ~~~p~~a~~~~~~li~---~~~v~~iiG~~~s~~~~~~~~~~~~~ip~i~ 99 (347)
T cd06336 53 KYDPAEAAANARRLVQ---QDGVKFILGPIGGGITAAQQITERNKVLLLT 99 (347)
T ss_pred CCCHHHHHHHHHHHHh---hcCceEEEeCCCCchhhhhhhhhhcCceEEe
Confidence 3578877777777753 3368899998877766667788888998875
No 142
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=29.52 E-value=1.3e+02 Score=25.41 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHhCCCEEEE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 91 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~ 91 (190)
..++..++.+++.++|.||++-.|.. ..|..+|..+++|++.+
T Consensus 64 ~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaI 107 (351)
T cd08170 64 AEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGAPVVIV 107 (351)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCCCEEEe
Confidence 44566666676678999999987664 57888888889998765
No 143
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=29.49 E-value=1.2e+02 Score=20.12 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCEEEEEcCccCchHHHHHHHHHHHHcCCe
Q 029645 124 PGERALVIDDLVATGGTLSAAVRLLERMGAE 154 (190)
Q Consensus 124 ~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~ 154 (190)
+++.|+++ +.+|.....+...|++.|..
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 56777775 67888888999999999976
No 144
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=29.34 E-value=43 Score=25.65 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=16.5
Q ss_pred EEEEEcCccCchHHHHHHHHH
Q 029645 127 RALVIDDLVATGGTLSAAVRL 147 (190)
Q Consensus 127 ~VLlVDDvvtTG~Tl~~~~~~ 147 (190)
.=+|+|=...||+|+.+|.++
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l 212 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEEL 212 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHT
T ss_pred ceeeehhhhccChHHHHHHHc
Confidence 347899999999999998764
No 145
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=29.30 E-value=1.5e+02 Score=24.95 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHhCCCEEEE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 91 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~ 91 (190)
..++.+.+.+.+.++|+||++-.|.. ..|..+|...++|++.+
T Consensus 65 ~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~p~i~i 108 (339)
T cd08173 65 EEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGIPFISV 108 (339)
T ss_pred HHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCCCEEEe
Confidence 44445555555567899999986554 57888887789998775
No 146
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=28.88 E-value=25 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=13.2
Q ss_pred CccCchHHHHHHHHHHHHcCCeEE
Q 029645 133 DLVATGGTLSAAVRLLERMGAEVV 156 (190)
Q Consensus 133 DvvtTG~Tl~~~~~~L~~~Ga~~i 156 (190)
|++.||+|++ ++|.+++
T Consensus 177 DivsTG~TLr-------~NgL~~i 193 (228)
T PRK13583 177 DITSTGETLR-------ANHLKIL 193 (228)
T ss_pred hhhchhHHHH-------HCCCEEe
Confidence 8999999985 4566655
No 147
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=28.72 E-value=1.3e+02 Score=25.68 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHhCCCEEEE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 91 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~ 91 (190)
..++.+++.+++.++|+||++-.|.. ..|..+|..+++|++.+
T Consensus 71 ~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~I 114 (366)
T PRK09423 71 NEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGVPVVIV 114 (366)
T ss_pred HHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCEEEe
Confidence 35556666676668999999987664 57888888889998765
No 148
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=28.68 E-value=47 Score=24.06 Aligned_cols=49 Identities=31% Similarity=0.343 Sum_probs=28.9
Q ss_pred cCchHHHHHHHHH----HHHcCCeEEEEEEEeecCCcc------ccccccCCCeEEEEe
Q 029645 135 VATGGTLSAAVRL----LERMGAEVVECACVVGLPEVR------GQRRLDGKPLYILVE 183 (190)
Q Consensus 135 vtTG~Tl~~~~~~----L~~~Ga~~i~v~vl~~~~~~~------g~~~l~~~~~~sl~~ 183 (190)
-.||.|+..+++. |...|..+..--...+..+.. ..-.++|.|+..++.
T Consensus 19 ~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~~~S~~I~inG~piE~~l~ 77 (120)
T PF10865_consen 19 GDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQPLESPTIRINGRPIEDLLG 77 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcccCCCeeeECCEehhHhhC
Confidence 4699999999988 567787764443333322111 111345777766653
No 149
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=28.63 E-value=24 Score=26.93 Aligned_cols=18 Identities=44% Similarity=0.626 Sum_probs=13.8
Q ss_pred CccCchHHHHHHHHHHHHcCCeEEE
Q 029645 133 DLVATGGTLSAAVRLLERMGAEVVE 157 (190)
Q Consensus 133 DvvtTG~Tl~~~~~~L~~~Ga~~i~ 157 (190)
|++.||+||+ ++|.+++.
T Consensus 112 Div~TG~TLr-------~NgL~~i~ 129 (163)
T PF01634_consen 112 DIVETGTTLR-------ANGLKEIE 129 (163)
T ss_dssp EEESSSHHHH-------HTTEEEEE
T ss_pred EeccCcHHHH-------HCCCEEeE
Confidence 8999999974 56776643
No 150
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=28.60 E-value=1.3e+02 Score=25.48 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHhCCCEEEE
Q 029645 50 TVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 91 (190)
Q Consensus 50 ~~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~ 91 (190)
.+...++.+++.++|+||++-.|.. ..|..+|..+++|++.+
T Consensus 65 ~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~p~i~V 107 (349)
T cd08550 65 EVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDKPIVIV 107 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCEEEe
Confidence 3455555565568899999986554 57888888889998775
No 151
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.57 E-value=1.5e+02 Score=25.03 Aligned_cols=43 Identities=7% Similarity=0.019 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHhCCCEEEE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 91 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~ 91 (190)
..++.+++..++.++|.||++-.|.. ..|..+|..+++|++.+
T Consensus 65 ~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~V 108 (345)
T cd08171 65 ENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLGKPVFTF 108 (345)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEe
Confidence 44445555566668999999987664 57888888889998765
No 152
>PLN02384 ribose-5-phosphate isomerase
Probab=27.98 E-value=1.8e+02 Score=24.08 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 42 ~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
+.-+-+..+++.|+++++.....-|.++|++ .....+|..+|+|+..+
T Consensus 56 GTGSTv~~~I~~La~r~~~~~l~~I~~VpTS--~~T~~~a~~~GIpl~~l 103 (264)
T PLN02384 56 GTGSTAKHAVDRIGELLRQGKLKNIIGIPTS--KKTHEQAVSLGIPLSDL 103 (264)
T ss_pred cchHHHHHHHHHHHHhhhhccccceEEEcCc--HHHHHHHHHcCCcEecc
Confidence 3445555666677666643222225666665 55677888888887664
No 153
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=27.14 E-value=2.2e+02 Score=24.10 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=23.7
Q ss_pred HHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 56 DRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 56 ~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
+.+.+.++|+||.=. ....+..+|+.+|+|++.+
T Consensus 86 ~~~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~~ 119 (392)
T TIGR01426 86 EAYKGDRPDLIVYDI--ASWTGRLLARKWDVPVISS 119 (392)
T ss_pred HHhcCCCCCEEEECC--ccHHHHHHHHHhCCCEEEE
Confidence 334445789987754 3356788899999998653
No 154
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=27.01 E-value=2.4e+02 Score=23.52 Aligned_cols=44 Identities=7% Similarity=-0.003 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCChhh-HHHHHHHhCCCEEEE
Q 029645 48 KDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAKFVPL 91 (190)
Q Consensus 48 ~~~~~~la~~i~~~~~d~Iv~i~~gG~~~-a~~la~~L~~p~~~~ 91 (190)
......+.+.+.+.++|+|+.-..+...+ +...|..+++|++.+
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 34445566666677899999886555445 456677789998754
No 155
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=26.80 E-value=27 Score=29.23 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=13.7
Q ss_pred cCccCchHHHHHHHHHHHHcCCeEE
Q 029645 132 DDLVATGGTLSAAVRLLERMGAEVV 156 (190)
Q Consensus 132 DDvvtTG~Tl~~~~~~L~~~Ga~~i 156 (190)
=|+++||+|++ .+|.+++
T Consensus 160 vDivsTG~TLk-------aNgL~~i 177 (290)
T COG0040 160 VDIVSTGTTLK-------ANGLKEI 177 (290)
T ss_pred EEeecCCHhHH-------HCCCEEE
Confidence 38999999975 5676654
No 156
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=26.70 E-value=2.6e+02 Score=20.54 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=39.7
Q ss_pred hhHHHHHHHhCCCEEEEeccCCC-CCceeeeeeeeecccceEEEecCCCCCCCEEEEEcCccC-chHHHHHHHHHHHHcC
Q 029645 75 VFGPSIALAIGAKFVPLRKPNKL-PGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVA-TGGTLSAAVRLLERMG 152 (190)
Q Consensus 75 ~~a~~la~~L~~p~~~~rk~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~gk~VLlVDDvvt-TG~Tl~~~~~~L~~~G 152 (190)
.+|..+|..++..+.-+.-.... +....-. .......+.+.+.++.. ..+|+++|.+=. +=+|-.++.+++.+.-
T Consensus 14 ~la~~lA~~~~~~f~RIq~tpdllPsDi~G~-~v~~~~~~~f~~~~GPi--f~~ill~DEiNrappktQsAlLeam~Er~ 90 (131)
T PF07726_consen 14 TLAKALARSLGLSFKRIQFTPDLLPSDILGF-PVYDQETGEFEFRPGPI--FTNILLADEINRAPPKTQSALLEAMEERQ 90 (131)
T ss_dssp HHHHHHHHHTT--EEEEE--TT--HHHHHEE-EEEETTTTEEEEEE-TT---SSEEEEETGGGS-HHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHcCCceeEEEecCCCCcccceee-eeeccCCCeeEeecChh--hhceeeecccccCCHHHHHHHHHHHHcCe
Confidence 46788888888776544322111 1111100 01112234566666665 356999999965 4567777888887654
Q ss_pred C
Q 029645 153 A 153 (190)
Q Consensus 153 a 153 (190)
.
T Consensus 91 V 91 (131)
T PF07726_consen 91 V 91 (131)
T ss_dssp E
T ss_pred E
Confidence 3
No 157
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=26.54 E-value=1.1e+02 Score=20.84 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=21.7
Q ss_pred EEEEeCCCC-hhhHHHHHHHhCCCEEEE
Q 029645 65 VVAGIEARG-FVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 65 ~Iv~i~~gG-~~~a~~la~~L~~p~~~~ 91 (190)
+|.|++..| -.+|..||..+|.+++.+
T Consensus 3 ~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 477888766 578999999999987664
No 158
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=26.29 E-value=2.5e+02 Score=23.17 Aligned_cols=44 Identities=7% Similarity=-0.024 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCChhh-HHHHHHHhCCCEEEE
Q 029645 48 KDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAKFVPL 91 (190)
Q Consensus 48 ~~~~~~la~~i~~~~~d~Iv~i~~gG~~~-a~~la~~L~~p~~~~ 91 (190)
..+...+...+.+.++|+|++.......+ +...|..+++|++.+
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~ 118 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHV 118 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 34445555666666899999886544444 455666779998764
No 159
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=26.12 E-value=52 Score=25.03 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=15.7
Q ss_pred CCChhhHHHHHHHhCCCEEE
Q 029645 71 ARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 71 ~gG~~~a~~la~~L~~p~~~ 90 (190)
.||-.+|..||..||+|+..
T Consensus 10 sgg~~Ia~~LA~~Lg~~~~d 29 (179)
T PF13189_consen 10 SGGREIAERLAEKLGYPYYD 29 (179)
T ss_dssp SSHHHHHHHHHHHCT--EE-
T ss_pred CChHHHHHHHHHHcCCccCC
Confidence 68899999999999999865
No 160
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.72 E-value=42 Score=27.11 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=27.7
Q ss_pred cCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccc--cCCCeEEEEeccc
Q 029645 135 VATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRL--DGKPLYILVEPRL 186 (190)
Q Consensus 135 vtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l--~~~~~~sl~~~~~ 186 (190)
+.||+|+...++.|-+.-.....+.++.. ++.. ...+ .|+|+.++-.++.
T Consensus 26 lGTGST~~~fI~~Lg~~~~~e~~i~~V~T-S~~t-~~l~~~~GI~v~~l~~~~~ 77 (227)
T COG0120 26 LGTGSTAAYFIEALGRRVKGELDIGGVPT-SFQT-EELARELGIPVSSLNEVDS 77 (227)
T ss_pred EcCcHHHHHHHHHHHHhhccCccEEEEeC-CHHH-HHHHHHcCCeecCccccCc
Confidence 58999999999999631111111222222 1111 1222 2888888877653
No 161
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=25.60 E-value=2.4e+02 Score=23.10 Aligned_cols=39 Identities=10% Similarity=-0.106 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEE
Q 029645 52 DIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 52 ~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~ 90 (190)
..+...+++.++|+|++........+...+..+++|+++
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 344555666689999997543333455567777888865
No 162
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=25.55 E-value=1.5e+02 Score=24.78 Aligned_cols=41 Identities=29% Similarity=0.463 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCcccc
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQ 170 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~ 170 (190)
.+|++++| +..|++.++++-.|.+.|++.+. ++++...++.
T Consensus 124 ~~~~~vli----lGAGGAarAv~~aL~~~g~~~i~---V~NRt~~ra~ 164 (283)
T COG0169 124 VTGKRVLI----LGAGGAARAVAFALAEAGAKRIT---VVNRTRERAE 164 (283)
T ss_pred cCCCEEEE----ECCcHHHHHHHHHHHHcCCCEEE---EEeCCHHHHH
Confidence 36899997 68999999999999999987654 5677554443
No 163
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=25.27 E-value=1.4e+02 Score=25.66 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=36.5
Q ss_pred CEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCCccccccccCC-CeEEEEecc
Q 029645 126 ERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEVRGQRRLDGK-PLYILVEPR 185 (190)
Q Consensus 126 k~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~~~g~~~l~~~-~~~sl~~~~ 185 (190)
+++||-|+.+.+-.-+...++..++.|+++.-+-.-+. .| ++|.++ .+-+++.++
T Consensus 295 etLLIsD~l~~~r~~~~~l~~~v~~~gg~V~i~Ss~~e----~G-~qL~~lgGiaAiLRy~ 350 (351)
T TIGR00111 295 EYLLVTDKVLVQREEIEKLLDSVESMGGKVVILSTEHE----LG-KQLDSLGGIAGILRFP 350 (351)
T ss_pred eEEEEecchhhhHHHHHHHHHHHHHcCCEEEEEcCCCc----cH-HHHhhCCCEEEEEecc
Confidence 68999999977777788899999999998644332222 23 444432 466666543
No 164
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=25.18 E-value=32 Score=26.80 Aligned_cols=20 Identities=45% Similarity=0.680 Sum_probs=15.4
Q ss_pred EcCccCchHHHHHHHHHHHHcCCeEEE
Q 029645 131 IDDLVATGGTLSAAVRLLERMGAEVVE 157 (190)
Q Consensus 131 VDDvvtTG~Tl~~~~~~L~~~Ga~~i~ 157 (190)
|=|++.||+|+++ +|.+++.
T Consensus 152 IvDiv~TG~TL~~-------NgL~~ie 171 (182)
T TIGR00070 152 IVDIVSTGTTLRE-------NGLRIIE 171 (182)
T ss_pred EEEEeCCHHHHHH-------CCCEEee
Confidence 3379999999976 7777664
No 165
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=24.96 E-value=1.8e+02 Score=24.74 Aligned_cols=42 Identities=14% Similarity=0.312 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHhCCCEEEE
Q 029645 50 TVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 91 (190)
Q Consensus 50 ~~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L~~p~~~~ 91 (190)
.++.+++.+.+.+.|+||++-.|-. ..|..+|...++|++.+
T Consensus 75 ~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~I 117 (350)
T PRK00843 75 EVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGIPFISV 117 (350)
T ss_pred HHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCCCEEEe
Confidence 4445555555557899999987654 47778887779998775
No 166
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=24.60 E-value=1.8e+02 Score=19.28 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeE
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEV 155 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~ 155 (190)
.+++.|+++.+ +|..-..+...|+..|-+.
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~ 88 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKN 88 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCcc
Confidence 36778888874 6777777788899999764
No 167
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=24.41 E-value=87 Score=25.26 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=23.0
Q ss_pred CCCCCEEEEEcCccCchHHHHHHHHHHHHcC
Q 029645 122 IEPGERALVIDDLVATGGTLSAAVRLLERMG 152 (190)
Q Consensus 122 ~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~G 152 (190)
+..|++|||+ +-|.|+++.++.|....
T Consensus 171 l~~Gk~VlI~----AHGNSlRaLiK~L~~iS 197 (230)
T COG0588 171 LKSGKNVLIV----AHGNSLRALIKYLEGIS 197 (230)
T ss_pred HhCCCeEEEE----ecchhHHHHHHHHhCCC
Confidence 3589999986 56999999999998664
No 168
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=24.26 E-value=2e+02 Score=23.46 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=24.5
Q ss_pred hcCCCCEEEEeCCCC--hhhHHHHHHHhCCCEEEEecc
Q 029645 59 RDMGISVVAGIEARG--FVFGPSIALAIGAKFVPLRKP 94 (190)
Q Consensus 59 ~~~~~d~Iv~i~~gG--~~~a~~la~~L~~p~~~~rk~ 94 (190)
++.++|++|+=..|| +.-=-..|..+|+|++.+++.
T Consensus 187 ~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 224 (248)
T PRK08057 187 RQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARP 224 (248)
T ss_pred HHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 344778888877777 333345677788888877654
No 169
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=24.01 E-value=2.7e+02 Score=22.93 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=25.4
Q ss_pred CCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 63 ISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 63 ~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
||+++-+..+.-..|-.=|..||+|++-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAl 185 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVAL 185 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEE
Confidence 89999999988888888899999998654
No 170
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=24.01 E-value=1.8e+02 Score=21.16 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhh--cCCCCEEEEeCCCCh----hhHHHHHHHhCCCEEEEe
Q 029645 47 FKDTVDIFVDRYR--DMGISVVAGIEARGF----VFGPSIALAIGAKFVPLR 92 (190)
Q Consensus 47 ~~~~~~~la~~i~--~~~~d~Iv~i~~gG~----~~a~~la~~L~~p~~~~r 92 (190)
+..+.+.+.+.+. .....-++=-+.||| .++..++..++.|+.++.
T Consensus 73 l~~Lv~~~~~~v~~~~~~~~~v~~n~TGGfK~~~~~~~~~g~~~~~~v~Yi~ 124 (136)
T PF09651_consen 73 LRNLVRWVAEEVKNYKGRGYEVIFNATGGFKAEIAYLTLLGMLYGDPVYYIF 124 (136)
T ss_dssp HHHHHHHTHHHHHHHHHTT-EEEEE-SSS-HHHHHHHHHHHHHT--EEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCChHHHHHHHHHHHHHcCCCEEEEE
Confidence 4455566666654 223344666678998 467778888888988753
No 171
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=23.87 E-value=3e+02 Score=23.59 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCChhh--HHHHHHHh--CCCEEE
Q 029645 48 KDTVDIFVDRYRDMGISVVAGIEARGFVF--GPSIALAI--GAKFVP 90 (190)
Q Consensus 48 ~~~~~~la~~i~~~~~d~Iv~i~~gG~~~--a~~la~~L--~~p~~~ 90 (190)
..+.+.+.+.. .++|++|.|..-||++ |..+ +.. ++|+++
T Consensus 64 ~~~~~~~~~~~--~~pd~~i~iD~p~Fnl~lak~~-k~~~~~i~viy 107 (347)
T PRK14089 64 KKAIKEMVELA--KQADKVLLMDSSSFNIPLAKKI-KKAYPKKEIIY 107 (347)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHH-HhcCCCCCEEE
Confidence 33444444443 4799999999999986 4433 455 688765
No 172
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=22.84 E-value=2.8e+02 Score=19.48 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=45.6
Q ss_pred EEEEeCCCC-hhhHHHHHHHhCCCEEEEeccCCCCCceeeeeeeeecccceEEEecCCCC---CCCEEEEEcCccCchHH
Q 029645 65 VVAGIEARG-FVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIE---PGERALVIDDLVATGGT 140 (190)
Q Consensus 65 ~Iv~i~~gG-~~~a~~la~~L~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~gk~VLlVDDvvtTG~T 140 (190)
+++|.+..| -.++..+|..++.|+..+.-....+..-....+....+...+. .+.+. +...++++|++-..-.+
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~--~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFK--DGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEE--E-CCCTTHHEEEEEEESSCGG--HH
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccc--cccccccccceeEEEECCcccCCHH
Confidence 467777655 5689999999998886654332221111111111111111222 23222 35689999999877677
Q ss_pred HHHHHHHHHHcC
Q 029645 141 LSAAVRLLERMG 152 (190)
Q Consensus 141 l~~~~~~L~~~G 152 (190)
+...+.-+.+.+
T Consensus 81 v~~~L~~ll~~~ 92 (139)
T PF07728_consen 81 VLESLLSLLEER 92 (139)
T ss_dssp HHHTTHHHHSSS
T ss_pred HHHHHHHHHhhC
Confidence 766666555544
No 173
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=22.80 E-value=1.5e+02 Score=24.49 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecCC
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 166 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~~ 166 (190)
.+|++++| +.+|++.++++-.|.+.|++.+. ++++..
T Consensus 125 ~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~---i~nR~~ 161 (283)
T PRK14027 125 AKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQ---VADLDT 161 (283)
T ss_pred cCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEE---EEcCCH
Confidence 46788885 68999999999999999987655 446643
No 174
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=22.73 E-value=1.9e+02 Score=24.05 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecC
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 165 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~ 165 (190)
.+|++++| +.+|++.++++..|...|++.+. ++++.
T Consensus 122 ~~~k~vlv----lGaGGaarAi~~~l~~~g~~~i~---i~nRt 157 (288)
T PRK12749 122 IKGKTMVL----LGAGGASTAIGAQGAIEGLKEIK---LFNRR 157 (288)
T ss_pred cCCCEEEE----ECCcHHHHHHHHHHHHCCCCEEE---EEeCC
Confidence 47888886 57899999999989999987654 55554
No 175
>PRK11024 colicin uptake protein TolR; Provisional
Probab=22.65 E-value=3e+02 Score=20.04 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=28.7
Q ss_pred CCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEE
Q 029645 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 159 (190)
Q Consensus 124 ~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~ 159 (190)
++..|+|--|=-++=.++..+++.++++|...++.+
T Consensus 102 ~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~ 137 (141)
T PRK11024 102 PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLM 137 (141)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 455677777777777799999999999999877654
No 176
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=22.63 E-value=1.5e+02 Score=24.71 Aligned_cols=45 Identities=9% Similarity=-0.103 Sum_probs=30.7
Q ss_pred cCHH-HHHHHHHHHHHHhhcCCCCEEEEeCCCCh----hhHHHHHHHhCCCEEE
Q 029645 42 LDHK-AFKDTVDIFVDRYRDMGISVVAGIEARGF----VFGPSIALAIGAKFVP 90 (190)
Q Consensus 42 ~~~~-~~~~~~~~la~~i~~~~~d~Iv~i~~gG~----~~a~~la~~L~~p~~~ 90 (190)
.||. .+..+++.+ ....+.+|+|+...+. .....+|..+++|++.
T Consensus 46 ~d~~~~~~~~~~~l----~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is 95 (362)
T cd06367 46 TDPISLLLSVCDLL----VVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVG 95 (362)
T ss_pred CCHHHHHHHHHHHh----cccceEEEEecCCCCccchhhhhhhhhhhhcCcEEE
Confidence 3663 333444444 3336788899888886 5678889999999875
No 177
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=22.51 E-value=1.4e+02 Score=25.72 Aligned_cols=43 Identities=21% Similarity=0.064 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCChhhH--HHHHHHhCCCEEEE
Q 029645 48 KDTVDIFVDRYRDMGISVVAGIEARGFVFG--PSIALAIGAKFVPL 91 (190)
Q Consensus 48 ~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a--~~la~~L~~p~~~~ 91 (190)
....+.+.+.. ..+++.|++++.||.+-. ...|..+|+|++..
T Consensus 78 ~~a~~~le~~~-g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDa 122 (353)
T PF06032_consen 78 LRAVEALEKYL-GRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDA 122 (353)
T ss_dssp HHHHHHHHHHT-T--EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB
T ss_pred HHHHHHHHHhh-CCCccEEeehhcCccchhHHHHHHHHhCCCEEcC
Confidence 34444444433 346999999999998754 44566789998864
No 178
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=22.48 E-value=1.5e+02 Score=25.91 Aligned_cols=30 Identities=37% Similarity=0.514 Sum_probs=23.7
Q ss_pred CCCEE-------EEEcCccCchHHHHHHHHHHHHcCC
Q 029645 124 PGERA-------LVIDDLVATGGTLSAAVRLLERMGA 153 (190)
Q Consensus 124 ~gk~V-------LlVDDvvtTG~Tl~~~~~~L~~~Ga 153 (190)
+|.+| |+|||.+.+-..-..++++|+..|+
T Consensus 139 rgh~i~~v~e~plVV~d~~e~~~KTK~av~~Lk~lg~ 175 (381)
T PTZ00428 139 RGHRISNVPEVPLVVSDSVESYEKTKEAVAFLKALGA 175 (381)
T ss_pred ccccccccccCCEEEEcCcCCCCCHHHHHHHHHHcCC
Confidence 46666 8888888775566788999999987
No 179
>PRK13947 shikimate kinase; Provisional
Probab=22.34 E-value=1e+02 Score=22.74 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.0
Q ss_pred EEEEeC-CCChhhHHHHHHHhCCCEEE
Q 029645 65 VVAGIE-ARGFVFGPSIALAIGAKFVP 90 (190)
Q Consensus 65 ~Iv~i~-~gG~~~a~~la~~L~~p~~~ 90 (190)
+++|++ .|+-.+|..||..|+.|++.
T Consensus 5 ~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 5 VLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 466766 56678999999999999876
No 180
>PRK06620 hypothetical protein; Validated
Probab=22.33 E-value=1.7e+02 Score=23.02 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=23.3
Q ss_pred CEEEEEcCccC-chHHHHHHHHHHHHcCCeE
Q 029645 126 ERALVIDDLVA-TGGTLSAAVRLLERMGAEV 155 (190)
Q Consensus 126 k~VLlVDDvvt-TG~Tl~~~~~~L~~~Ga~~ 155 (190)
..+|+|||+=. ++..+-++.+.+.+.|...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~e~g~~i 116 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIINEKQKYL 116 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHHhcCCEE
Confidence 46899999942 4567888889999998643
No 181
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=22.18 E-value=2.9e+02 Score=22.84 Aligned_cols=40 Identities=18% Similarity=-0.015 Sum_probs=26.3
Q ss_pred HHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 52 DIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 52 ~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
..+...+++.++|+|++........+...+...++|+++.
T Consensus 81 ~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 81 LQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 3444555666899999986443344555667778898764
No 182
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=22.16 E-value=2.2e+02 Score=21.62 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=21.2
Q ss_pred CCEEEEEcCccCch-HHHHHHHHHHHHcCCeE
Q 029645 125 GERALVIDDLVATG-GTLSAAVRLLERMGAEV 155 (190)
Q Consensus 125 gk~VLlVDDvvtTG-~Tl~~~~~~L~~~Ga~~ 155 (190)
.+.|+|++|.-+.+ ..+.++++.+++.|.++
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v 139 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENIRV 139 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCcEE
Confidence 34677778865442 35667888899988764
No 183
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=21.78 E-value=2.1e+02 Score=18.94 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=23.5
Q ss_pred CCCEEEEEcCccCchHHHHHHHHHHHHcCCeEE
Q 029645 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVV 156 (190)
Q Consensus 124 ~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i 156 (190)
+++.|+++++ +|.....+...|.+.|...+
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v 86 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENV 86 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccE
Confidence 4778888865 58788888888999997644
No 184
>PRK04940 hypothetical protein; Provisional
Probab=21.73 E-value=3.9e+02 Score=20.73 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=24.9
Q ss_pred CCCEEEEeCCCChhhHHHHHHHhCCCEEEEe
Q 029645 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (190)
Q Consensus 62 ~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~r 92 (190)
+...+||..-||| .|+.+|...++|.+.+.
T Consensus 60 ~~~~liGSSLGGy-yA~~La~~~g~~aVLiN 89 (180)
T PRK04940 60 ERPLICGVGLGGY-WAERIGFLCGIRQVIFN 89 (180)
T ss_pred CCcEEEEeChHHH-HHHHHHHHHCCCEEEEC
Confidence 4579999999996 58889999999987763
No 185
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=21.54 E-value=2.4e+02 Score=24.03 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCCEEEEeCCCCh-hhHHHHHHHh
Q 029645 50 TVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAI 84 (190)
Q Consensus 50 ~~~~la~~i~~~~~d~Iv~i~~gG~-~~a~~la~~L 84 (190)
.+..+++.+++.++|+||++-.|.. ..|..+|..+
T Consensus 68 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~ 103 (370)
T cd08551 68 NVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA 103 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 3444445555567899999987654 5777777776
No 186
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=21.36 E-value=4.5e+02 Score=25.72 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEE
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVEC 158 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v 158 (190)
.+|.+||++||--.. ...+...|++.|+.++.+
T Consensus 687 l~g~~vLlvdD~~~~---r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 687 LDGVTVLLDITSEEV---RKIVTRQLENWGATCITP 719 (894)
T ss_pred CCCCEEEEEeCCHHH---HHHHHHHHHHCCCEEEEc
Confidence 478899999998765 344556788899887543
No 187
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=21.03 E-value=3.4e+02 Score=23.12 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhH-HHHHHHhCCCEEEE
Q 029645 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG-PSIALAIGAKFVPL 91 (190)
Q Consensus 45 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a-~~la~~L~~p~~~~ 91 (190)
+.+..+...+.+.+.+.++|+|+...-+.-.+| ...|..+++|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hv 123 (365)
T TIGR03568 76 KSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHI 123 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEE
Confidence 333444555556666678999998886665555 55567789999864
No 188
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=20.95 E-value=1.8e+02 Score=25.61 Aligned_cols=35 Identities=6% Similarity=-0.000 Sum_probs=28.9
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChh
Q 029645 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFV 75 (190)
Q Consensus 41 ~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~ 75 (190)
-.+++..+.+++.++++++...-.+.+-+|.+|+.
T Consensus 311 Rtt~eE~~~~g~~ia~kLn~~~gpv~v~lP~~G~S 345 (403)
T PF06792_consen 311 RTTPEENRQLGEFIAEKLNRAKGPVRVLLPLGGVS 345 (403)
T ss_pred eCCHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCc
Confidence 45899999999999999987655677788888864
No 189
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=20.87 E-value=2.1e+02 Score=18.99 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=24.4
Q ss_pred CCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEE
Q 029645 124 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 157 (190)
Q Consensus 124 ~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~ 157 (190)
+++.|+++++ +|.+...+...|+..|-+.+.
T Consensus 65 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 95 (106)
T cd01519 65 KDKELIFYCK---AGVRSKAAAELARSLGYENVG 95 (106)
T ss_pred CCCeEEEECC---CcHHHHHHHHHHHHcCCccce
Confidence 5778999864 688888889999999976543
No 190
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=20.70 E-value=2.4e+02 Score=23.01 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCccCchHHHHHHHHHHHHcCCeEEEEEEEeecC
Q 029645 123 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 165 (190)
Q Consensus 123 ~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga~~i~v~vl~~~~ 165 (190)
..+++|+|+ .+|++-++++..|.+.|+..+. ++++.
T Consensus 121 ~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~---v~~R~ 156 (278)
T PRK00258 121 LKGKRILIL----GAGGAARAVILPLLDLGVAEIT---IVNRT 156 (278)
T ss_pred CCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEE---EEeCC
Confidence 478899875 6799999999999999965433 44554
No 191
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=20.62 E-value=52 Score=26.15 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=15.7
Q ss_pred EEEEEcCccCchHHHHHHHHH
Q 029645 127 RALVIDDLVATGGTLSAAVRL 147 (190)
Q Consensus 127 ~VLlVDDvvtTG~Tl~~~~~~ 147 (190)
.-++|||+++|+.....-.+.
T Consensus 40 ~~vlI~DilDtl~i~~~~l~~ 60 (210)
T PF03192_consen 40 YPVLIDDILDTLHIYKKHLEL 60 (210)
T ss_dssp S-BEEEEETTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHH
Confidence 467899999999988855444
No 192
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=20.47 E-value=2.4e+02 Score=24.83 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=41.9
Q ss_pred ceEEecHhHhcCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCChhhH-HH---HHHHhCCCEEEE
Q 029645 32 IMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG-PS---IALAIGAKFVPL 91 (190)
Q Consensus 32 ~~~~d~~~~~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~a-~~---la~~L~~p~~~~ 91 (190)
..-.|+..++-++...+.+++.+..... +.|.|+.++-=|+..+ .. ++..||.++..+
T Consensus 188 ~~~~~iAr~ld~~~~~~~l~~~l~~~~~--~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~v 249 (422)
T PRK05329 188 FRAVNIARLLDDPENREALADALKPLAG--DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFEL 249 (422)
T ss_pred ccHHHHHHHhCChhHHHHHHHHHHHhcC--CCCEEEECceecCCChHHHHHHHHHHHCCCEEEe
Confidence 3446677778888888888888876543 4578888887777776 43 446799988765
No 193
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=20.44 E-value=3.6e+02 Score=21.84 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEeCCCChhhHHHHHHHhCCCEEEE
Q 029645 49 DTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (190)
Q Consensus 49 ~~~~~la~~i~~~~~d~Iv~i~~gG~~~a~~la~~L~~p~~~~ 91 (190)
...+.+.+.+...++|+||+= ..+++...|+..++|++.+
T Consensus 81 ~~~~~~~~~l~~~~pDlVIsD---~~~~~~~aa~~~giP~i~i 120 (318)
T PF13528_consen 81 RRIRREIRWLREFRPDLVISD---FYPLAALAARRAGIPVIVI 120 (318)
T ss_pred HHHHHHHHHHHhcCCCEEEEc---ChHHHHHHHHhcCCCEEEE
Confidence 344445556666689999875 3455677888899998765
No 194
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=20.35 E-value=3.5e+02 Score=19.73 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHHHHHhhcCCCC-EEEEeCC--CCh---------hhHHHHHHHhCCCEEEE
Q 029645 52 DIFVDRYRDMGIS-VVAGIEA--RGF---------VFGPSIALAIGAKFVPL 91 (190)
Q Consensus 52 ~~la~~i~~~~~d-~Iv~i~~--gG~---------~~a~~la~~L~~p~~~~ 91 (190)
..+.+.+.+.+++ +|||.|. .|. .++..|+..+++|+...
T Consensus 44 ~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~ 95 (138)
T PRK00109 44 DRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLV 95 (138)
T ss_pred HHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4444444444455 7889883 333 56777777777776654
No 195
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=20.17 E-value=2.4e+02 Score=17.81 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=30.1
Q ss_pred CCCCCEEEEEcCccCchHHHHHHHHHHHHcCC
Q 029645 122 IEPGERALVIDDLVATGGTLSAAVRLLERMGA 153 (190)
Q Consensus 122 ~~~gk~VLlVDDvvtTG~Tl~~~~~~L~~~Ga 153 (190)
+..|..|+=|++.-.++.|...+.++++..+.
T Consensus 43 l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~ 74 (81)
T PF00595_consen 43 LKVGDRILEINGQSVRGMSHDEVVQLLKSASN 74 (81)
T ss_dssp SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS
T ss_pred cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC
Confidence 56899999999999999999999999999987
No 196
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=20.09 E-value=3.1e+02 Score=20.06 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCEEEEeCCCC-hhhHHHHHHHhCCC
Q 029645 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARG-FVFGPSIALAIGAK 87 (190)
Q Consensus 42 ~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG-~~~a~~la~~L~~p 87 (190)
.+++....+++.++..++...+-++.|....| -.++..++..++.+
T Consensus 3 ~s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 3 PDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46788889999999887644443455554433 57899999999864
Done!