BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029646
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IO5|A Chain A, Crystal Structure Of The Cia- Histone H3-H4 Complex
Length = 175
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 125/164 (76%), Gaps = 1/164 (0%)
Query: 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60
M+ V + NV VLDNP+ F NPFQFEI++EC+ L +DLEWK+IYVGSAE E YDQ+L+SV
Sbjct: 4 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 63
Query: 61 LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDE 120
LVGPV G + FV QAD P+P I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct: 64 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 123
Query: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENNEHGEDS 164
+LRE PP K ++QRNILA PRVT+F IN+ +N E ED+
Sbjct: 124 ELRENPPVKPDFSKLQRNILASNPRVTRFHINWE-DNTEKLEDA 166
>pdb|2I32|A Chain A, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
pdb|2I32|B Chain B, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
Length = 182
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 119/153 (77%)
Query: 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60
M+ V + NV VLDNP+ F NPFQFEI++EC+ L +DLEWK+IYVGSAE E YDQ+L+SV
Sbjct: 26 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 85
Query: 61 LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDE 120
LVGPV G + FV QAD P+P I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct: 86 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 145
Query: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINF 153
+LRE PP K ++QRNILA PRVT+F IN+
Sbjct: 146 ELRENPPVKPDFSKLQRNILASNPRVTRFHINW 178
>pdb|3AAD|B Chain B, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
pdb|3AAD|D Chain D, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 158
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 119/153 (77%)
Query: 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60
M+ V + NV VLDNP+ F NPFQFEI++EC+ L +DLEWK+IYVGSAE E YDQ+L+SV
Sbjct: 4 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 63
Query: 61 LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDE 120
LVGPV G + FV QAD P+P I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct: 64 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 123
Query: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINF 153
+LRE PP K ++QRNILA PRVT+F IN+
Sbjct: 124 ELRENPPVKPDFSKLQRNILASNPRVTRFHINW 156
>pdb|1TEY|A Chain A, Nmr Structure Of Human Histone Chaperone, Asf1a
pdb|2IIJ|A Chain A, Structure Of Human Asf1a In Complex With Histone H3
Length = 158
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 119/153 (77%)
Query: 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60
M+ V + NV VLDNP+ F NPFQFEI++EC+ L +DLEWK+IYVGSAE E YDQ+L+SV
Sbjct: 3 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 62
Query: 61 LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDE 120
LVGPV G + FV QAD P+P I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct: 63 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 122
Query: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINF 153
+LRE PP K ++QRNILA PRVT+F IN+
Sbjct: 123 ELRENPPVKPDFSKLQRNILASNPRVTRFHINW 155
>pdb|1WG3|A Chain A, Structural Analysis Of Yeast Nucleosome-Assembly Factor
Cia1p
Length = 175
Score = 194 bits (492), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 125/168 (74%), Gaps = 2/168 (1%)
Query: 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60
MS V++ + VL+NPA F +P++FEI++ECL LK DLEWKL YVGS+ +DQ L+S+
Sbjct: 7 MSIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSI 66
Query: 61 LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDE 120
LVGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+YD+E
Sbjct: 67 LVGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEE 126
Query: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENNEHGEDSPPDQ 168
+LRE PP KV +D + RNILA+KPRVT+F I + EN G+ PP+Q
Sbjct: 127 ELRENPPAKVQVDHIVRNILAEKPRVTRFNIVWDNEN--EGDLYPPEQ 172
>pdb|4EO5|A Chain A, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 169
Score = 191 bits (484), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 124/167 (74%), Gaps = 2/167 (1%)
Query: 2 SAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVL 61
S V++ + VL+NPA F +P++FEI++ECL LK DLEWKL YVGS+ +DQ L+S+L
Sbjct: 2 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 61
Query: 62 VGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQ 121
VGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+YD+E+
Sbjct: 62 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 121
Query: 122 LREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENNEHGEDSPPDQ 168
LRE PP KV +D + RNILA+KPRVT+F I + EN G+ PP+Q
Sbjct: 122 LRENPPAKVQVDHIVRNILAEKPRVTRFNIVWDNEN--EGDLYPPEQ 166
>pdb|2HUE|A Chain A, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 175
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 124/167 (74%), Gaps = 2/167 (1%)
Query: 2 SAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVL 61
S V++ + VL+NPA F +P++FEI++ECL LK DLEWKL YVGS+ +DQ L+S+L
Sbjct: 8 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 67
Query: 62 VGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQ 121
VGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+YD+E+
Sbjct: 68 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 127
Query: 122 LREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENNEHGEDSPPDQ 168
LRE PP KV +D + RNILA+KPRVT+F I + EN G+ PP+Q
Sbjct: 128 LRENPPAKVQVDHIVRNILAEKPRVTRFNIVWDNEN--EGDLYPPEQ 172
>pdb|2YGV|A Chain A, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
pdb|2YGV|B Chain B, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
pdb|2YGV|C Chain C, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
pdb|2YGV|D Chain D, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
Length = 158
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 116/151 (76%)
Query: 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60
MS V++ + VL+NPA F +P++FEI++ECL LK DLEWKL YVGS+ +DQ L+S+
Sbjct: 3 MSIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSI 62
Query: 61 LVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDE 120
LVGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+YD+E
Sbjct: 63 LVGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEE 122
Query: 121 QLREEPPPKVLIDRVQRNILADKPRVTKFPI 151
+LRE PP KV +D + RNILA+KPRVT+F I
Sbjct: 123 ELRENPPAKVQVDHIVRNILAEKPRVTRFNI 153
>pdb|2IDC|A Chain A, Structure Of The Histone H3-Asf1 Chaperone Interaction
Length = 179
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 88/150 (58%), Positives = 115/150 (76%)
Query: 2 SAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVL 61
S V++ + VL+NPA F +P++FEI++ECL LK DLEWKL YVGS+ +DQ L+S+L
Sbjct: 4 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 63
Query: 62 VGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQ 121
VGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+YD+E+
Sbjct: 64 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 123
Query: 122 LREEPPPKVLIDRVQRNILADKPRVTKFPI 151
LRE PP KV +D + RNILA+KPRVT+F I
Sbjct: 124 LRENPPAKVQVDHIVRNILAEKPRVTRFNI 153
>pdb|1ROC|A Chain A, Crystal Structure Of The Histone Deposition Protein Asf1
Length = 155
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 88/150 (58%), Positives = 115/150 (76%)
Query: 2 SAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVL 61
S V++ + VL+NPA F +P++FEI++ECL LK DLEWKL YVGS+ +DQ L+S+L
Sbjct: 3 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 62
Query: 62 VGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQ 121
VGPV VG +FV ADPP I +++ VTV+LL+CSY G+EFVRVGYYVNN+YD+E+
Sbjct: 63 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 122
Query: 122 LREEPPPKVLIDRVQRNILADKPRVTKFPI 151
LRE PP KV +D + RNILA+KPRVT+F I
Sbjct: 123 LRENPPAKVQVDHIVRNILAEKPRVTRFNI 152
>pdb|2CU9|A Chain A, Crystal Structure Of Histone Chaperone Cia1
pdb|2DZE|A Chain A, Crystal Structure Of Histone Chaperone Asf1 In Complex
With A C-Terminus Of Histone H3
pdb|2DZE|B Chain B, Crystal Structure Of Histone Chaperone Asf1 In Complex
With A C-Terminus Of Histone H3
pdb|2Z34|A Chain A, Crystal Structure Of Spcia1ASF1 COMPLEX WITH HIP1
pdb|2Z34|B Chain B, Crystal Structure Of Spcia1ASF1 COMPLEX WITH HIP1
pdb|2Z3F|A Chain A, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|B Chain B, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|C Chain C, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|D Chain D, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|E Chain E, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|F Chain F, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|G Chain G, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|H Chain H, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
Length = 161
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 118/159 (74%), Gaps = 6/159 (3%)
Query: 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESV 60
MS VNI +V VL+NPA F +P++FEI++ECL PLK DLEWKL YVGSA ++YDQ+L+++
Sbjct: 1 MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTL 60
Query: 61 LVGPVNVGNYRFVLQADPPDPSKI-REEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 119
LVGP+ +G +FV +ADPP+ + + D++GVTV+LL+C+Y EFVRVGYYVNN+ +
Sbjct: 61 LVGPIPIGINKFVFEADPPNIDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEG 120
Query: 120 EQLREE-----PPPKVLIDRVQRNILADKPRVTKFPINF 153
L+E KV I +V R+ILA+KPRVT+F I +
Sbjct: 121 LNLQEMDDAEIKKVKVDISKVWRSILAEKPRVTRFNIQW 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,583,478
Number of Sequences: 62578
Number of extensions: 284263
Number of successful extensions: 349
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 14
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)