Query 029646
Match_columns 190
No_of_seqs 111 out of 174
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 16:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3265 Histone chaperone invo 100.0 7.9E-83 1.7E-87 547.9 14.8 155 1-155 1-155 (250)
2 PF04729 ASF1_hist_chap: ASF1 100.0 2.5E-82 5.5E-87 517.2 14.8 154 1-154 1-154 (154)
3 COG5137 Histone chaperone invo 100.0 2E-67 4.2E-72 453.2 12.8 168 1-170 1-173 (279)
4 PF02221 E1_DerP2_DerF2: ML do 69.1 24 0.00052 26.4 6.5 81 3-85 14-107 (134)
5 PF14524 Wzt_C: Wzt C-terminal 67.4 6.5 0.00014 29.1 3.1 72 2-79 11-95 (142)
6 cd00917 PG-PI_TP The phosphati 63.9 65 0.0014 24.8 9.9 82 3-87 11-99 (122)
7 smart00737 ML Domain involved 43.1 90 0.0019 23.2 5.7 40 4-44 9-48 (118)
8 PF11033 ComJ: Competence prot 32.0 62 0.0013 26.3 3.5 33 43-83 80-112 (125)
9 PHA02766 hypothetical protein; 29.4 65 0.0014 23.6 2.9 23 21-43 12-50 (73)
10 PF04809 HupH_C: HupH hydrogen 29.4 73 0.0016 25.2 3.4 25 39-67 72-96 (120)
11 PF07495 Y_Y_Y: Y_Y_Y domain; 27.1 1E+02 0.0022 20.2 3.5 27 59-85 30-56 (66)
12 PRK00523 hypothetical protein; 25.5 3.9 8.4E-05 30.4 -4.1 22 109-130 21-42 (72)
13 PRK01844 hypothetical protein; 24.8 4.1 8.8E-05 30.3 -4.1 22 109-130 20-41 (72)
14 PF00845 Gemini_BL1: Geminivir 24.2 1.2E+02 0.0026 27.7 4.2 96 4-111 62-166 (276)
15 PF03672 UPF0154: Uncharacteri 24.0 4.2 9E-05 29.5 -4.1 22 109-130 13-34 (64)
16 cd00258 GM2-AP GM2 activator p 23.4 2.5E+02 0.0054 23.8 5.7 39 3-41 14-52 (162)
No 1
>KOG3265 consensus Histone chaperone involved in gene silencing [Transcription; Chromatin structure and dynamics]
Probab=100.00 E-value=7.9e-83 Score=547.89 Aligned_cols=155 Identities=72% Similarity=1.237 Sum_probs=154.7
Q ss_pred CcceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCC
Q 029646 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD 80 (190)
Q Consensus 1 Ms~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd 80 (190)
||+|+|+||+||+||++|.+||+|+|||||+++|++||||||||||||+|++|||+|||++|||||+|+|||+|+|||||
T Consensus 1 Ms~v~i~~V~Vl~Npa~F~dPfkFEItFEC~E~Lk~DLEWkliYVGSa~See~DQvLdsilVGPVP~G~~~FVf~AD~Pd 80 (250)
T KOG3265|consen 1 MSKVNILNVEVLDNPAKFVDPFKFEITFECLEELKHDLEWKLIYVGSAESEEYDQVLDSILVGPVPVGRHKFVFQADAPD 80 (250)
T ss_pred CceeeeeeEEEccCccccCCceeEEEEEEEhhhcCCCceEEEEEeeccccchhhhhhhheeeccccccceEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEEcCeEEEEEEEEEeeccCCcccccCCCCccccceeEeecccCCCeeeEeeeecCC
Q 029646 81 PSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKVLIDRVQRNILADKPRVTKFPINFHP 155 (190)
Q Consensus 81 ~~kIP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~p~~dkl~R~Il~~kPRVTrf~I~Wd~ 155 (190)
++|||.+|++|||+|||||||++||||||||||||+|++++||||||.+++++||+|+||++|||||||+|+||+
T Consensus 81 ~~kIP~~d~vGVTviLltC~Y~gQEFIRvGYyVnNeY~~~elrEnpP~k~~idKv~RnIlaekpRvTrF~I~wd~ 155 (250)
T KOG3265|consen 81 PSKIPEDDIVGVTVILLTCSYRGQEFIRVGYYVNNEYTEEELRENPPSKPLIDKLQRNILAEKPRVTRFPINWDD 155 (250)
T ss_pred cccCcccceeeeEEEEEEEEEcCceeEEEEEEecCCCCchhhccCCCCchhHHHHHHHhhccCCceeEeeeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF04729 ASF1_hist_chap: ASF1 like histone chaperone; InterPro: IPR006818 This family includes the yeast and human ASF1 protein. These proteins have histone chaperone activity []. ASF1 participates in both the replication-dependent and replication-independent pathways. The structure three-dimensional has been determined as a compact immunoglobulin-like beta sandwich fold topped by three helical linkers [].; GO: 0006333 chromatin assembly or disassembly, 0005634 nucleus; PDB: 2YGV_C 1WG3_A 2HUE_A 2IDC_A 4EO5_A 1ROC_A 1TEY_A 2IO5_A 3AAD_D 2IIJ_A ....
Probab=100.00 E-value=2.5e-82 Score=517.18 Aligned_cols=154 Identities=71% Similarity=1.226 Sum_probs=137.7
Q ss_pred CcceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCC
Q 029646 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD 80 (190)
Q Consensus 1 Ms~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd 80 (190)
||+|+|+||+|+||||+|.+||+|||+|||+++|++|||||+||||||+|++|||+||+++|||+++|+|||+|+|+|||
T Consensus 1 Ms~V~l~~V~vl~np~~f~~p~~feI~fE~~e~L~~dleWkiiYVgSa~~~~~DQ~Ld~v~vGPi~~G~~kF~~~adpPd 80 (154)
T PF04729_consen 1 MSRVNLTNVEVLNNPAPFTDPFQFEITFECLEPLEDDLEWKIIYVGSAESEEYDQELDSVLVGPIPVGVNKFVFEADPPD 80 (154)
T ss_dssp --SEEEEEEEESSTSEETTS-EEEEEEEEESSE-SS-EEEEEEEESSSSSGGGEEEEEEEEECS-ESEEEEEEEEE----
T ss_pred CCeEEEEEEEEeCCccccCCCEEEEEEEEECccccCCcEEEEEEEecccccCCcEEEeeEEECCCcceeEEEEEEccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEEcCeEEEEEEEEEeeccCCcccccCCCCccccceeEeecccCCCeeeEeeeecC
Q 029646 81 PSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKVLIDRVQRNILADKPRVTKFPINFH 154 (190)
Q Consensus 81 ~~kIP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~p~~dkl~R~Il~~kPRVTrf~I~Wd 154 (190)
+++||.+|++|||||||||||++|||+||||||||+|.|++|+||||.+|+++||+|+||++|||||||+|+||
T Consensus 81 ~~~Ip~~dllGvTvillt~sY~~~EFiRVGYYVnney~d~el~e~pp~~~~~~~l~R~Il~~~PRVTrf~I~Wd 154 (154)
T PF04729_consen 81 PSKIPPEDLLGVTVILLTCSYRGQEFIRVGYYVNNEYPDPELRENPPEKPDIDKLQRNILADKPRVTRFPIKWD 154 (154)
T ss_dssp GGGSSCCHHSEEEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHS-HSS--GGGEEEEEETTSEEEEE-S--TS
T ss_pred hhhCChhhccccEEEEEEEEECCeEEEEEeeEEEeeeCCHHHhhCcCCCcCHHHEEEeeccCCCeEEeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=100.00 E-value=2e-67 Score=453.19 Aligned_cols=168 Identities=51% Similarity=0.942 Sum_probs=159.5
Q ss_pred CcceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCC
Q 029646 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD 80 (190)
Q Consensus 1 Ms~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd 80 (190)
||+|+|++|+|||||++|.+||+|+|||||+++|++|||||++||||+.|.++||+||+++|||||+|++||+|.||||+
T Consensus 1 Msiv~llsi~VlnnpaKf~DPykFeitFeClE~lK~dlEwkltYvgs~~S~~~DQvLd~ilVgPiP~G~nkFvf~ADpP~ 80 (279)
T COG5137 1 MSIVKLLSIEVLNNPAKFGDPYKFEITFECLEELKCDLEWKLTYVGSVHSDENDQVLDEILVGPIPKGKNKFVFDADPPD 80 (279)
T ss_pred CceeeeEEEEeecChhhcCCCeeeEEEEEEhhhhcCCceEEEEEeeccccccchhhhhheeeccccccceeEEeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEEcCeEEEEEEEEEeeccC-----CcccccCCCCccccceeEeecccCCCeeeEeeeecCC
Q 029646 81 PSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYD-----DEQLREEPPPKVLIDRVQRNILADKPRVTKFPINFHP 155 (190)
Q Consensus 81 ~~kIP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~-----d~el~enpP~~p~~dkl~R~Il~~kPRVTrf~I~Wd~ 155 (190)
..+||.++++|||+|||+|+|++|||+||||||||+|. ..+.+|+|+.+.+.+++.|+||++|||||||.|-||+
T Consensus 81 v~liPlse~~gvTvILlsc~Y~g~eFvRvGYyVnney~gi~~~e~~d~E~p~~kvd~~~v~r~ilaEkprvtrfnIvwDn 160 (279)
T COG5137 81 VNLIPLSEMFGVTVILLSCRYKGQEFVRVGYYVNNEYPGITKLEKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDN 160 (279)
T ss_pred ccccchhhhhceeEEEEEEeecCceeEEEEEEeccCCcchhhhhhhhhcCCchhcCHHHHHHHHhccCCcceeeeeEecC
Confidence 99999999999999999999999999999999999999 6778899999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCccc
Q 029646 156 ENNEHGEDSPPDQAT 170 (190)
Q Consensus 156 ~~~~~~~~~~~~~~~ 170 (190)
++.. ..+||.|+.
T Consensus 161 ~~d~--d~apP~qpd 173 (279)
T COG5137 161 DEDN--DEAPPAQPD 173 (279)
T ss_pred Cccc--ccCCCCCCC
Confidence 7643 344554433
No 4
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=69.05 E-value=24 Score=26.43 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=53.1
Q ss_pred ceEEeeEEEccC-CccCCCCeEEEEEEEEcCCCCCCceEEEEEEecC-CC--C-CCCeeEeeEE----ec---ceeceee
Q 029646 3 AVNITNVTVLDN-PAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSA-ED--E-TYDQLLESVL----VG---PVNVGNY 70 (190)
Q Consensus 3 ~V~i~~V~vl~N-p~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa-~s--~-~~DQvLdsv~----VG---Pi~~G~~ 70 (190)
..+|++|.+-.+ |-....++.++++|.......+.+..++...-.. -. . ..++..|-+. .| |+..|..
T Consensus 14 ~~~v~~v~i~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~ 93 (134)
T PF02221_consen 14 PGTVTSVDISPPCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEY 93 (134)
T ss_dssp CECEEEEEEESSEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEE
T ss_pred CceeEEEEECCCCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcE
Confidence 467888888733 6777889999999988888888887654433222 00 0 1233334444 56 9999977
Q ss_pred -EEEEEeCCCCCCCCC
Q 029646 71 -RFVLQADPPDPSKIR 85 (190)
Q Consensus 71 -kFv~eadpPd~~kIP 85 (190)
.|.++..-| ..+|
T Consensus 94 ~~~~~~~~i~--~~~p 107 (134)
T PF02221_consen 94 YTYTYTIPIP--KIYP 107 (134)
T ss_dssp EEEEEEEEES--TTSS
T ss_pred EEEEEEEEcc--ccee
Confidence 777777544 4455
No 5
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=67.45 E-value=6.5 Score=29.15 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=40.9
Q ss_pred cceEEeeEEEccC------CccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEe-------eEEecceece
Q 029646 2 SAVNITNVTVLDN------PAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLE-------SVLVGPVNVG 68 (190)
Q Consensus 2 s~V~i~~V~vl~N------p~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLd-------sv~VGPi~~G 68 (190)
..+.|++|.+++. -....+++.|+|+|+|.+++++ +..-+.--.+ ..|.+- ...+.....|
T Consensus 11 ~~~~I~~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~-~~~~~~i~~~-----~g~~v~~~~t~~~~~~~~~~~~g 84 (142)
T PF14524_consen 11 GEARITSVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDD-PVFGFAIRDS-----DGQRVFGTNTYDSGFPIPLSEGG 84 (142)
T ss_dssp SSEEEEEEEEEETTEES-SSEETTSEEEEEEEEEESS-EEE-EEEEEEEEET-----T--EEEEEEHHHHT--EEE-TT-
T ss_pred CCEEEEEEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCc-cEEEEEEEcC-----CCCEEEEECccccCccccccCCC
Confidence 3578999999973 3467899999999999888877 3332222111 112211 1122222378
Q ss_pred eeEEEEEeCCC
Q 029646 69 NYRFVLQADPP 79 (190)
Q Consensus 69 ~~kFv~eadpP 79 (190)
++++.++.+.+
T Consensus 85 ~~~~~~~i~~~ 95 (142)
T PF14524_consen 85 TYEVTFTIPKP 95 (142)
T ss_dssp EEEEEEEEE--
T ss_pred EEEEEEEEcCc
Confidence 88888887665
No 6
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=63.86 E-value=65 Score=24.75 Aligned_cols=82 Identities=26% Similarity=0.251 Sum_probs=53.7
Q ss_pred ceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEE--EEEe--cCCCCCCCe--eEeeE-EecceeceeeEEEEE
Q 029646 3 AVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKL--IYVG--SAEDETYDQ--LLESV-LVGPVNVGNYRFVLQ 75 (190)
Q Consensus 3 ~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKi--iYVG--Sa~s~~~DQ--vLdsv-~VGPi~~G~~kFv~e 75 (190)
.++|.+|.|-.+|-.=..++.|.+.|...+++.+-+...+ .|-| -. ...+|= .+... +==|+..|.+.+..+
T Consensus 11 ~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~-~~~~DlC~~~~~~g~~CPi~~G~~~~~~~ 89 (122)
T cd00917 11 IVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLL-SETYDLCDETKNVDLSCPIEPGDKFLTKL 89 (122)
T ss_pred eEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEee-cccCCcccccccCCCcCCcCCCcEEEEEE
Confidence 5789999999999888899999999999999998544442 2211 11 112221 11000 124899999888887
Q ss_pred eCCCCCCCCCCC
Q 029646 76 ADPPDPSKIREE 87 (190)
Q Consensus 76 adpPd~~kIP~~ 87 (190)
..-| ..+|..
T Consensus 90 ~~ip--~~~P~g 99 (122)
T cd00917 90 VDLP--GEIPPG 99 (122)
T ss_pred eeCC--CCCCCc
Confidence 7766 445653
No 7
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=43.12 E-value=90 Score=23.23 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=32.3
Q ss_pred eEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEE
Q 029646 4 VNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIY 44 (190)
Q Consensus 4 V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiY 44 (190)
.++.+|.|..+|.....++.++|.|+..+++++ +.-++.+
T Consensus 9 ~~i~~v~v~Pc~~~~g~~~~i~i~f~~~~~~~~-~~~~v~~ 48 (118)
T smart00737 9 GQISSVSISPCPPVRGKTLTISISFTLNEDISK-LKVVVHV 48 (118)
T ss_pred ceEEEEEecCCCCCCCCEEEEEEEEEEcccceE-EEEEEEE
Confidence 578999998888888899999999999888865 5554443
No 8
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=31.99 E-value=62 Score=26.29 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=23.7
Q ss_pred EEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCCCCC
Q 029646 43 IYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSK 83 (190)
Q Consensus 43 iYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd~~k 83 (190)
|+|+|.-|+ -+-=|||.|.+..+|++-||+-+.
T Consensus 80 i~V~Svls~--------~~~~~ip~G~Y~Lv~~~ip~~~~~ 112 (125)
T PF11033_consen 80 IEVSSVLSE--------KLSFDIPKGDYQLVFQTIPPEDEE 112 (125)
T ss_pred EEEEEeecC--------cEEEecCCCcEEEEEEEeCCCccc
Confidence 566665433 345588999999999999965443
No 9
>PHA02766 hypothetical protein; Provisional
Probab=29.45 E-value=65 Score=23.57 Aligned_cols=23 Identities=39% Similarity=0.723 Sum_probs=18.7
Q ss_pred CeEEEEEEEEcC----------------CCCCCceEEEE
Q 029646 21 PFQFEISYECLT----------------PLKDDLEWKLI 43 (190)
Q Consensus 21 Pf~feI~FEcle----------------~L~~DleWKii 43 (190)
.++|+|.||.-+ +|.+.+|.|+-
T Consensus 12 slkfkisfeineedyqqlielafsqfiyplndnieikin 50 (73)
T PHA02766 12 SLKFKISFEINEEDYQQLIELAFSQFIYPLNDNIEIKIN 50 (73)
T ss_pred heeEEEEEEECHHHHHHHHHHHHHhheeeCCCceEEEec
Confidence 368999999865 88999998874
No 10
>PF04809 HupH_C: HupH hydrogenase expression protein, C-terminal conserved region; InterPro: IPR006894 This entry represents the C-terminal conserved domain found in bacterial hydrogenase expression proteins (HupH), which are necessary for hydrogenase synthesis. The precise function of HupH is unknown [].; PDB: 3SB1_A.
Probab=29.45 E-value=73 Score=25.22 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=18.3
Q ss_pred eEEEEEEecCCCCCCCeeEeeEEecceec
Q 029646 39 EWKLIYVGSAEDETYDQLLESVLVGPVNV 67 (190)
Q Consensus 39 eWKiiYVGSa~s~~~DQvLdsv~VGPi~~ 67 (190)
-|.+.|.++.. .-+||+++||++|.
T Consensus 72 VWrV~~~n~~~----~~i~d~iEV~~vP~ 96 (120)
T PF04809_consen 72 VWRVRYFNSDG----RLILDTIEVGDVPE 96 (120)
T ss_dssp EEEEEEE-TTS-----EEEEEEEESSS-G
T ss_pred EEEEEEECCCC----CEeeeeEEEeCCcH
Confidence 49999987743 46899999999985
No 11
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.12 E-value=1e+02 Score=20.24 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=19.6
Q ss_pred eEEecceeceeeEEEEEeCCCCCCCCC
Q 029646 59 SVLVGPVNVGNYRFVLQADPPDPSKIR 85 (190)
Q Consensus 59 sv~VGPi~~G~~kFv~eadpPd~~kIP 85 (190)
++..-+++.|++.|.+.|--.+-..-.
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~ 56 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSS 56 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-S
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCc
Confidence 889999999999999999776655444
No 12
>PRK00523 hypothetical protein; Provisional
Probab=25.51 E-value=3.9 Score=30.41 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=18.8
Q ss_pred EEEEEeeccCCcccccCCCCcc
Q 029646 109 VGYYVNNDYDDEQLREEPPPKV 130 (190)
Q Consensus 109 VGYYVnneY~d~el~enpP~~p 130 (190)
+|||+.--|...+|+||||..+
T Consensus 21 ~Gffiark~~~k~l~~NPpine 42 (72)
T PRK00523 21 IGYFVSKKMFKKQIRENPPITE 42 (72)
T ss_pred HHHHHHHHHHHHHHHHCcCCCH
Confidence 4788888899999999999655
No 13
>PRK01844 hypothetical protein; Provisional
Probab=24.78 E-value=4.1 Score=30.30 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=18.8
Q ss_pred EEEEEeeccCCcccccCCCCcc
Q 029646 109 VGYYVNNDYDDEQLREEPPPKV 130 (190)
Q Consensus 109 VGYYVnneY~d~el~enpP~~p 130 (190)
+|+|+.--|...+|+||||-.+
T Consensus 20 ~Gff~ark~~~k~lk~NPpine 41 (72)
T PRK01844 20 LGFFIARKYMMNYLQKNPPINE 41 (72)
T ss_pred HHHHHHHHHHHHHHHHCCCCCH
Confidence 4788888899999999999655
No 14
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=24.15 E-value=1.2e+02 Score=27.71 Aligned_cols=96 Identities=25% Similarity=0.372 Sum_probs=55.1
Q ss_pred eEEeeEEEccCC---ccCCCCeEEEEEEEEcC----CCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEe
Q 029646 4 VNITNVTVLDNP---AAFLNPFQFEISYECLT----PLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQA 76 (190)
Q Consensus 4 V~i~~V~vl~Np---~~f~~Pf~feI~FEcle----~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~ea 76 (190)
|.|..=.+-+|- |.|+-|+...|-++-.. .|+|.+-|||.|=.+.+ +.-|----+- =.|+.|..=
T Consensus 62 VEIhD~Rmtd~es~QA~~TfPI~CNidLHYfSSSfFSlKDp~PWkl~YrV~Dt--NV~~~thFak----~kgKLKLSt-- 133 (276)
T PF00845_consen 62 VEIHDKRMTDNESLQASFTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVEDT--NVHQGTHFAK----FKGKLKLST-- 133 (276)
T ss_pred EEEeccccccChhheeEEEeeeeeeeeeEEeeecceecCCCCCeEEEEEeecC--ccccceeeee----eeceeeecc--
Confidence 444444455555 78999999999887766 79999999999976633 3222221111 123333321
Q ss_pred CCCCCCCCCCCCceeeEEEEEEEEE--cCeEEEEEEE
Q 029646 77 DPPDPSKIREEDIIGVTVLLLTCSY--IGQEFVRVGY 111 (190)
Q Consensus 77 dpPd~~kIP~~dilGvTviLlt~sY--~~qEFiRVGY 111 (190)
+=....||. -..|+=+|+=.| +.-.|..|||
T Consensus 134 -AKHS~DI~F---r~PtikILSK~ft~~~vDF~~V~~ 166 (276)
T PF00845_consen 134 -AKHSVDIPF---RAPTIKILSKQFTEKDVDFWHVGY 166 (276)
T ss_pred -ccccccccc---CCCceEeeecccCcCCCceeecCC
Confidence 111112331 123455555545 5568999997
No 15
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=23.97 E-value=4.2 Score=29.55 Aligned_cols=22 Identities=32% Similarity=0.872 Sum_probs=18.6
Q ss_pred EEEEEeeccCCcccccCCCCcc
Q 029646 109 VGYYVNNDYDDEQLREEPPPKV 130 (190)
Q Consensus 109 VGYYVnneY~d~el~enpP~~p 130 (190)
+|||+..-|...+|++|||-..
T Consensus 13 ~Gff~ar~~~~k~l~~NPpine 34 (64)
T PF03672_consen 13 IGFFIARKYMEKQLKENPPINE 34 (64)
T ss_pred HHHHHHHHHHHHHHHHCCCCCH
Confidence 4888888999999999999554
No 16
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=23.42 E-value=2.5e+02 Score=23.79 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=34.7
Q ss_pred ceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEE
Q 029646 3 AVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWK 41 (190)
Q Consensus 3 ~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWK 41 (190)
.+.|+++.+--||-.+...+.+.+.++..+.|...+.-+
T Consensus 14 p~~i~sl~l~PdPi~ipg~~tvs~~~~~~~~lsSp~~~~ 52 (162)
T cd00258 14 PAVIKSLTVNPDPINIPGDLTVSTVGSTSVPLSSPLKVI 52 (162)
T ss_pred ceEEeeeEEcCCCcccCCcEEEEEEEEEeeEcCCCcEEE
Confidence 578999999999999999999999999999999975444
Done!