Query 029646
Match_columns 190
No_of_seqs 111 out of 174
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 02:58:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hue_A Anti-silencing protein 100.0 1.1E-84 3.7E-89 538.7 17.2 167 1-169 7-173 (175)
2 1roc_A Anti-silencing protein 100.0 1.8E-84 6.2E-89 529.1 17.5 154 1-154 2-155 (155)
3 2idc_A Anti-silencing protein 100.0 5.4E-84 1.9E-88 536.0 18.2 165 1-165 3-167 (179)
4 2io5_A ASF1A protein; chaperon 100.0 1.5E-83 5E-88 532.0 16.7 158 1-158 4-161 (175)
5 2i32_A Anti-silencing factor 1 100.0 1.9E-83 6.6E-88 533.7 16.4 156 1-156 26-181 (182)
6 2cu9_A Spcia1, histone chapero 100.0 5.8E-83 2E-87 522.8 18.9 155 1-155 1-161 (161)
7 2ag4_A GM2-AP, ganglioside GM2 66.7 8 0.00027 30.4 4.9 41 3-43 16-56 (164)
8 3sb1_A Hydrogenase expression 34.1 32 0.0011 27.6 3.4 26 39-68 113-138 (160)
9 2xzz_A Protein-glutamine gamma 18.3 2.8E+02 0.0095 20.0 8.9 68 8-82 9-77 (102)
10 4ee6_A Prenyltransferase; PT f 16.8 65 0.0022 28.5 2.2 57 94-156 220-280 (304)
No 1
>2hue_A Anti-silencing protein 1; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 1wg3_A
Probab=100.00 E-value=1.1e-84 Score=538.69 Aligned_cols=167 Identities=56% Similarity=0.998 Sum_probs=160.6
Q ss_pred CcceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCC
Q 029646 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD 80 (190)
Q Consensus 1 Ms~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd 80 (190)
||+|+|+||+|+|||++|++||+|||+|||+++|++|||||+||||||+|++|||+||+++|||+++|+|||+|+|||||
T Consensus 7 ms~V~l~~V~VlnNp~~f~dP~~FeI~fEcle~L~~dleWkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd 86 (175)
T 2hue_A 7 SSIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADPPS 86 (175)
T ss_dssp CCSEEEEEEEECSCSEETTSCEEEEEEEEECSCCSSCEEEEEEEESCTTCGGGEEEEEEEEECSCCSEEEEEEEEECCCC
T ss_pred CCEEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCCcEEEEEEEcCCCCccCCeEeeEEEECCccceeEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEEcCeEEEEEEEEEeeccCCcccccCCCCccccceeEeecccCCCeeeEeeeecCCCCCCC
Q 029646 81 PSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENNEH 160 (190)
Q Consensus 81 ~~kIP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~p~~dkl~R~Il~~kPRVTrf~I~Wd~~~~~~ 160 (190)
++|||.+||+||||||||||||+|||+||||||||+|.+++|+||||.+++++||+|+||++|||||||+|+||+++.+
T Consensus 87 ~~~IP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~~~~d~l~R~Il~~kPRVTrf~I~Wd~~~~~- 165 (175)
T 2hue_A 87 AELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKVQVDHIVRNILAEKPRVTRFNIVWDNENEG- 165 (175)
T ss_dssp GGGSCHHHHTSCEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGGEEEEECTTCCEEEECCCCCCTTTCC-
T ss_pred hhhCChhhccceEEEEEEEEECCeEEEEEEEEEecccCChHHhhCCCCCccHHHeeehhcCCCceEEeeeeccCCCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred CCCCCCCcc
Q 029646 161 GEDSPPDQA 169 (190)
Q Consensus 161 ~~~~~~~~~ 169 (190)
..+||+|+
T Consensus 166 -~~~~~~~~ 173 (175)
T 2hue_A 166 -DLYPPEQP 173 (175)
T ss_dssp -CSSCC---
T ss_pred -ccCCcccC
Confidence 66777665
No 2
>1roc_A Anti-silencing protein 1; beta-sandwich, replication, chaperone; 1.50A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 2ygv_A
Probab=100.00 E-value=1.8e-84 Score=529.07 Aligned_cols=154 Identities=57% Similarity=1.031 Sum_probs=153.6
Q ss_pred CcceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCC
Q 029646 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD 80 (190)
Q Consensus 1 Ms~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd 80 (190)
||+|+|+||+|+|||++|++||+|||+|||+++|++|||||++|||||+|++|||+||+++|||+++|+|||+|+|+|||
T Consensus 2 ms~V~i~~V~vl~np~~f~~p~~feI~fEc~e~L~~dlewkliYVgSa~s~~~DQ~Ld~v~vGPi~~G~~kFv~~adpPd 81 (155)
T 1roc_A 2 ASIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADPPS 81 (155)
T ss_dssp CCSEEEEEEEECSCSEETTSCEEEEEEEEECSCCSSCEEEEEEECCCTTSSCTTEEEEEEEECSCCSEEEEEEEEECCCC
T ss_pred CcEEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCCcEEEEEEEeCCCcccCceEeeEEEeccccceeEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEEcCeEEEEEEEEEeeccCCcccccCCCCccccceeEeecccCCCeeeEeeeecC
Q 029646 81 PSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKVLIDRVQRNILADKPRVTKFPINFH 154 (190)
Q Consensus 81 ~~kIP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~p~~dkl~R~Il~~kPRVTrf~I~Wd 154 (190)
++|||.+|++||||||||||||+|||+||||||||+|+|+||+||||.+|++|||+|+||++|||||||+|+||
T Consensus 82 ~~~Ip~~dilGvTvillt~sY~~qEFiRVGYYVnn~Y~d~el~enpP~~~~~d~l~R~Il~~kPRVTrf~I~Wd 155 (155)
T 1roc_A 82 AELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKVQVDHIVRNILAEKPRVTRFNIVWD 155 (155)
T ss_dssp GGGCCTHHHHSCEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGGEEEEECTTSCEEEECCCCCC
T ss_pred cccCChhhcceeEEEEEEEEECCcEEEEEEEEEeeeeCChHHccCCCCCcchHHEEEeecCCCceEEeeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>2idc_A Anti-silencing protein 1 and histone H3 chimera; IG-like fold, ASF1, chaperone, chromatin, repli chaperone complex; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-84 Score=536.05 Aligned_cols=165 Identities=53% Similarity=0.955 Sum_probs=156.4
Q ss_pred CcceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCC
Q 029646 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD 80 (190)
Q Consensus 1 Ms~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd 80 (190)
||+|+|+||+|+|||++|++||+|||+|||+++|++|||||+||||||+|++|||+||+++|||+++|+|||+|+|||||
T Consensus 3 ms~V~l~~V~VlnNp~~f~dP~~FeI~fEcle~L~~dleWkliYVgSa~s~~~DQ~Ldsv~VGPi~~G~~kFv~~adpPd 82 (179)
T 2idc_A 3 ASIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADPPS 82 (179)
T ss_dssp CCSEEEEEEEEESCSEETTSCEEEEEEEEECSCCSSCEEEEEEECSCTTCGGGCEEEEEEEECSCCSEEEEEEEEECCCC
T ss_pred ccEEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCCcEEEEEEEcCCCcccCCeEeeEEEECCccceeEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEEcCeEEEEEEEEEeeccCCcccccCCCCccccceeEeecccCCCeeeEeeeecCCCCCCC
Q 029646 81 PSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENNEH 160 (190)
Q Consensus 81 ~~kIP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~p~~dkl~R~Il~~kPRVTrf~I~Wd~~~~~~ 160 (190)
+++||.+||+|||||||||||++|||+||||||||+|.+++|+||||.+|++++|+|+||++|||||||+|+||+++.+.
T Consensus 83 ~~~IP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~~~~d~l~R~Il~~kPRVTrf~I~Wd~~~~~~ 162 (179)
T 2idc_A 83 AELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKVQVDHIVRNILAEKPRVTRFNIVWDNAAGAA 162 (179)
T ss_dssp GGGSCTTTTTSCEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGGEEEEECTTSCEEEECCCCCSCCC---
T ss_pred cccCChhhcceeEEEEEEEEECCeEEEEEEEEEecccCChHHhhCCCCCccHHHeeeeccCCCceEEeeccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred CCCCC
Q 029646 161 GEDSP 165 (190)
Q Consensus 161 ~~~~~ 165 (190)
...-+
T Consensus 163 ~~~~~ 167 (179)
T 2idc_A 163 TAAKK 167 (179)
T ss_dssp ----C
T ss_pred chhhc
Confidence 44333
No 4
>2io5_A ASF1A protein; chaperone, chaperone-structural protein complex; 2.70A {Homo sapiens} SCOP: b.1.22.1
Probab=100.00 E-value=1.5e-83 Score=532.04 Aligned_cols=158 Identities=59% Similarity=1.074 Sum_probs=153.7
Q ss_pred CcceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCC
Q 029646 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD 80 (190)
Q Consensus 1 Ms~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd 80 (190)
||+|+|+||+|+|||++|++||+|||+|||+++|++|||||+||||||+|++|||+||+++|||+++|+|||+|+|+|||
T Consensus 4 Ms~V~l~~V~vlnNp~~f~~P~~FeI~fEc~e~L~~dleWkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd 83 (175)
T 2io5_A 4 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPN 83 (175)
T ss_dssp CCCEEEEEEEECSCSEETTSCEEEEEEEEESSCCCSCEEEEEEEECCTTCGGGEEEEEEEEECSCCSEEEEEEEEECCCC
T ss_pred ccEEEEEEEEEeCCccccCCCeEEEEEEEeccccCCCcEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEEcCeEEEEEEEEEeeccCCcccccCCCCccccceeEeecccCCCeeeEeeeecCCCCC
Q 029646 81 PSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPENN 158 (190)
Q Consensus 81 ~~kIP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~p~~dkl~R~Il~~kPRVTrf~I~Wd~~~~ 158 (190)
++|||.+|++||||||||||||+|||+||||||||+|.|++|+||||.+|+++||+|+||++|||||||+|+||++.+
T Consensus 84 ~~~IP~~dilGvTvillt~sY~~qEFiRVGYYVnneY~d~el~enPP~~~~~~~l~R~Il~~kPRVTrf~I~Wd~~~~ 161 (175)
T 2io5_A 84 PGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTE 161 (175)
T ss_dssp GGGSCHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGGEEEEECTTCCEEEECCCCCC----
T ss_pred hhhCChhhcceeEEEEEEEEECCcEEEEEEEEEeeeeCChhhccCCCCCcchHHeEeeccCCCceEEeeeeccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998643
No 5
>2i32_A Anti-silencing factor 1 paralog A; histone deposition, chromatin regulation, histone chaperones, ASF1, HIRA, CAF-1, replication chaperone; 2.70A {Homo sapiens} SCOP: b.1.22.1 PDB: 1tey_A 2iij_A 3aad_B
Probab=100.00 E-value=1.9e-83 Score=533.73 Aligned_cols=156 Identities=60% Similarity=1.085 Sum_probs=153.7
Q ss_pred CcceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCC
Q 029646 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD 80 (190)
Q Consensus 1 Ms~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd 80 (190)
||+|+|+||+|+||||+|++||+|||+|||+++|++|||||+||||||+|++|||+||+++|||+++|+|||+|+|+|||
T Consensus 26 Ms~V~i~~V~VlnNp~~F~dP~~FeItfEcle~L~~dleWkliYVGSa~s~~~DQ~Ldsv~VGPi~~G~~kFvfeadpPd 105 (182)
T 2i32_A 26 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPN 105 (182)
T ss_dssp CCSEEEEEEEECSCSEETTSCEEEEEEEEESSCCSSCEEEEEEEESCSSCGGGEEEEEEEEECCCCSEEEEEEEEECCCC
T ss_pred ccEEEEEEEEEeCCchhcCCCeEEEEEEEEccccCCCcEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEEcCeEEEEEEEEEeeccCCcccccCCCCccccceeEeecccCCCeeeEeeeecCCC
Q 029646 81 PSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPPKVLIDRVQRNILADKPRVTKFPINFHPE 156 (190)
Q Consensus 81 ~~kIP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~p~~dkl~R~Il~~kPRVTrf~I~Wd~~ 156 (190)
++|||.+|++||||||||||||+|||+||||||||+|.|++|+||||.+|+++||+|+||++|||||||+|+||++
T Consensus 106 ~~kIP~~dilGVTviLlt~sY~~qEFiRVGYYVnneY~d~eL~enPP~~p~~d~l~R~Il~~kPRVTrF~I~Wd~~ 181 (182)
T 2i32_A 106 PGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDN 181 (182)
T ss_dssp GGGSCHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGGEEEEECTTSCEEEECCCCCC--
T ss_pred cccCChhhcceeEEEEEEEEECCeEEEEEEEEEeeeeCChHHccCCCCCcChHHeEeeecCCCceEEEeeeccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999974
No 6
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=100.00 E-value=5.8e-83 Score=522.82 Aligned_cols=155 Identities=55% Similarity=1.002 Sum_probs=154.0
Q ss_pred CcceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecceeceeeEEEEEeCCCC
Q 029646 1 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD 80 (190)
Q Consensus 1 Ms~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi~~G~~kFv~eadpPd 80 (190)
||+|+|+||+|+|||++|++||+|||+|||+++|++|||||++|||||+|++|||+||+++|||+++|+|||+|+|+|||
T Consensus 1 ms~V~i~~V~vlnnp~~f~~p~~feI~fEc~e~L~~dlewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd 80 (161)
T 2cu9_A 1 MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPN 80 (161)
T ss_dssp CCSEEEEEEEESSCSEETTSCEEEEEEEEECSCCSSCEEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCC
T ss_pred CCeEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCCeEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-CCceeeEEEEEEEEEcCeEEEEEEEEEeeccCCcccccCCCC-----ccccceeEeecccCCCeeeEeeeecC
Q 029646 81 PSKIRE-EDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDDEQLREEPPP-----KVLIDRVQRNILADKPRVTKFPINFH 154 (190)
Q Consensus 81 ~~kIP~-~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~-----~p~~dkl~R~Il~~kPRVTrf~I~Wd 154 (190)
+++||. +|++||||||||||||+|||+||||||||+|+|++|+||||+ +|+++||+|+||++|||||||+|+||
T Consensus 81 ~~~IP~~~dilGvTvillt~sY~~qEFiRVGYYVnneY~d~el~enpP~~~~~~~p~~~~l~R~Il~~kPRVTrf~I~W~ 160 (161)
T 2cu9_A 81 IDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQEMDDAEIKKVKVDISKVWRSILAEKPRVTRFNIQWD 160 (161)
T ss_dssp GGGSSCGGGGSEEEEEEEEEEETTEEEEEEEEEEEEEETTCCGGGSCHHHHTTSCCCGGGEEEEECTTSCEEEECCCCTT
T ss_pred hhHCCCcccceeeEEEEEEEEECCeEEEEEEEEEeceeCChHHccCCcchhccCCcchHHEEEeecCCCceEEEeccccC
Confidence 999999 999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred C
Q 029646 155 P 155 (190)
Q Consensus 155 ~ 155 (190)
+
T Consensus 161 ~ 161 (161)
T 2cu9_A 161 N 161 (161)
T ss_dssp C
T ss_pred C
Confidence 5
No 7
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=66.73 E-value=8 Score=30.41 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=37.7
Q ss_pred ceEEeeEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEE
Q 029646 3 AVNITNVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLI 43 (190)
Q Consensus 3 ~V~i~~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKii 43 (190)
.+.|.+|.+..||..+..++.|.+.+...++|...+.+.+.
T Consensus 16 ~~~i~~v~i~PdP~~~g~~~ti~~~~~l~~~i~~g~k~~v~ 56 (164)
T 2ag4_A 16 PAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLV 56 (164)
T ss_dssp SEEEEEEEEESSSEEESEEEEEEEEEEESSCBCSSCEEEEE
T ss_pred eEEEeEEEEeCCCCCCCCceEEEEEEEEeeccCCCCEEEEE
Confidence 58899999999999999999999999999999999877654
No 8
>3sb1_A Hydrogenase expression protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HUPH, unkno function; HET: PGE; 1.67A {Thiobacillus denitrificans}
Probab=34.11 E-value=32 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=20.0
Q ss_pred eEEEEEEecCCCCCCCeeEeeEEecceece
Q 029646 39 EWKLIYVGSAEDETYDQLLESVLVGPVNVG 68 (190)
Q Consensus 39 eWKiiYVGSa~s~~~DQvLdsv~VGPi~~G 68 (190)
-|.+.|..|.. .-+||.++||++|.-
T Consensus 113 VWrV~~~ns~~----~~ildtIEV~~vP~v 138 (160)
T 3sb1_A 113 VWWIIHRNAQG----AVTTQFIEVAFVPEL 138 (160)
T ss_dssp EEEEEEECTTS----CEEEEEEEESSSCGG
T ss_pred EEEEEEECCCC----CEEeeEEEEeCCCHH
Confidence 59999976532 348899999999853
No 9
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=18.34 E-value=2.8e+02 Score=19.99 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=50.5
Q ss_pred eEEEccCCccCCCCeEEEEEEEEcCCCCCCceEEEEEEecCCCCCCCeeEeeEEecce-eceeeEEEEEeCCCCCC
Q 029646 8 NVTVLDNPAAFLNPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPV-NVGNYRFVLQADPPDPS 82 (190)
Q Consensus 8 ~V~vl~Np~~f~~Pf~feI~FEcle~L~~DleWKiiYVGSa~s~~~DQvLdsv~VGPi-~~G~~kFv~eadpPd~~ 82 (190)
.|+++.. +....|+..+|+|- .+|+..|+-=.+.|..+. ..+- -++.+|+| |.++.++.++.-|....
T Consensus 9 ~I~v~g~-~~v~~~l~v~vsf~--NPL~~~L~~c~~~vEG~G---L~~~-~~~~~~~v~pg~~~~~~~~~~P~~~G 77 (102)
T 2xzz_A 9 SLTLLGA-AVVGQECEVQIVFK--NPLPVTLTNVVFRLEGSG---LQRP-KILNVGDIGGNETVTLRQSFVPVRPG 77 (102)
T ss_dssp EEEESSC-CCSSSCEEEEEEEE--CCSSSCBCSEEEEEEETT---TEEE-EEEEECCBCTTCEEEEEEEECCCSCS
T ss_pred EEEECCC-cccCCeEEEEEEEE--CCCCCcccCEEEEEECCC---CCcc-eEEEcCcCCCCCEEEEEEEEecCccc
Confidence 5667654 46788888888876 999999999888887766 4455 55678999 56677888887776543
No 10
>4ee6_A Prenyltransferase; PT fold; HET: MLY MLZ PG4; 1.33A {Streptomyces cinnamonensis} PDB: 4ee8_A* 4ee7_A* 4ee6_B*
Probab=16.78 E-value=65 Score=28.52 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=36.7
Q ss_pred EEEEEEEEcCeEEEEEEEEEeeccCCc-ccccCCC--CccccceeEeecc-cCCCeeeEeeeecCCC
Q 029646 94 VLLLTCSYIGQEFVRVGYYVNNDYDDE-QLREEPP--PKVLIDRVQRNIL-ADKPRVTKFPINFHPE 156 (190)
Q Consensus 94 viLlt~sY~~qEFiRVGYYVnneY~d~-el~enpP--~~p~~dkl~R~Il-~~kPRVTrf~I~Wd~~ 156 (190)
.+-.|.++...+.-||+||++.. |+ .| | ..+++++..++-= .-..+-..|.+.|...
T Consensus 220 ~~y~Tl~wdS~kIeRv~f~~~~~--d~~~l----P~~l~~~le~F~~~AP~~~d~~~~~y~vawS~~ 280 (304)
T 4ee6_A 220 VIYVTLSWDSPKINRFTYSVMTP--EPLGL----PVDLAPTFERLIKSAPYDTEGRNYVYGIASTPK 280 (304)
T ss_dssp EEEEEEETTCSSCCEEEEEEEES--CGGGS----SSCCCHHHHHHHHHCSSCCTTCCEEEEEEECSS
T ss_pred EEEEEEecCCcceeEEEEeccCC--ChhhC----cccchHHHHHHHHhCCCcCCcceeeEeeeecCC
Confidence 45689999999999999999876 44 22 2 2234444433321 1122466778999876
Done!