Query 029647
Match_columns 190
No_of_seqs 107 out of 1051
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 03:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 9.5E-48 3.3E-52 303.9 13.5 189 1-190 94-290 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 1.8E-47 6.1E-52 295.3 13.4 188 1-190 35-231 (262)
3 1aua_A Phosphatidylinositol tr 100.0 1.6E-45 5.5E-50 289.1 11.6 189 1-190 54-263 (296)
4 3q8g_A CRAL-TRIO domain-contai 100.0 1.5E-45 5E-50 291.6 9.8 189 1-190 63-278 (320)
5 1olm_A SEC14-like protein 2; l 100.0 1.5E-44 5E-49 294.6 12.1 189 1-190 37-243 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.6 1.7E-15 5.8E-20 115.7 6.4 139 39-184 3-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.4 1.3E-13 4.4E-18 106.8 5.4 132 46-183 28-162 (290)
8 1v92_A NSFL1 cofactor P47; 3-h 72.2 2.1 7.1E-05 22.7 1.8 18 3-20 24-41 (46)
9 3e21_A HFAF1, FAS-associated f 70.2 2.4 8.3E-05 22.7 1.7 16 4-19 26-41 (45)
10 2q3l_A Uncharacterized protein 67.3 13 0.00046 24.3 5.4 86 75-169 30-115 (126)
11 1z96_A DNA-damage, UBA-domain 67.3 4.3 0.00015 20.6 2.4 17 4-20 23-39 (40)
12 2dah_A Ubiquilin-3; UBA domain 66.1 5.2 0.00018 22.2 2.7 21 3-23 28-48 (54)
13 2dal_A Protein KIAA0794; FAS a 64.7 4.4 0.00015 23.2 2.2 18 3-20 34-51 (62)
14 2bwb_A Ubiquitin-like protein 63.5 5 0.00017 21.5 2.2 19 3-21 26-44 (46)
15 2dam_A ETEA protein; KIAA0887, 62.5 4.8 0.00017 23.5 2.1 19 3-21 38-56 (67)
16 1wr1_B Ubiquitin-like protein 62.2 5.1 0.00018 22.7 2.1 20 3-22 36-55 (58)
17 1otr_A Protein CUE2; protein-p 60.4 6.5 0.00022 21.4 2.3 21 3-23 24-44 (49)
18 2dna_A Unnamed protein product 59.1 8.2 0.00028 22.5 2.7 21 3-23 38-58 (67)
19 2knz_A Ubiquilin-4; cytoplasm, 58.3 8 0.00027 21.3 2.5 20 3-22 30-49 (53)
20 2dzl_A Protein FAM100B; UBA-li 57.6 7.1 0.00024 22.7 2.3 18 3-20 36-53 (66)
21 1q02_A Sequestosome 1; helical 57.0 8.8 0.0003 21.1 2.4 20 2-21 29-48 (52)
22 2cp8_A NEXT to BRCA1 gene 1 pr 56.5 10 0.00036 21.1 2.7 20 3-22 28-47 (54)
23 1ify_A HHR23A, UV excision rep 56.0 7.1 0.00024 21.1 2.0 19 4-22 27-45 (49)
24 2oo3_A Protein involved in cat 55.5 4.9 0.00017 30.6 1.7 26 137-162 238-263 (283)
25 1oai_A Nuclear RNA export fact 55.0 11 0.00037 21.3 2.7 22 3-24 26-47 (59)
26 1wgl_A TOLL-interacting protei 52.1 12 0.0004 21.2 2.5 20 3-22 29-48 (59)
27 1vej_A Riken cDNA 4931431F19; 51.2 11 0.00036 22.5 2.3 20 3-22 48-67 (74)
28 2jy5_A Ubiquilin-1; UBA, alter 50.1 11 0.00038 20.6 2.2 18 3-20 31-48 (52)
29 2g3q_A Protein YBL047C; endocy 48.1 11 0.00038 19.5 1.9 17 4-20 23-39 (43)
30 1wji_A Tudor domain containing 46.6 19 0.00064 20.6 2.9 20 4-23 28-47 (63)
31 2jp7_A MRNA export factor MEX6 46.4 14 0.00048 20.7 2.2 20 3-22 25-44 (57)
32 2cp9_A EF-TS, EF-TSMT, elongat 43.6 17 0.00056 21.0 2.3 25 5-29 30-57 (64)
33 1vg5_A RSGI RUH-014, rhomboid 41.7 15 0.00051 21.8 1.9 18 4-21 48-65 (73)
34 3kdg_A DNA mismatch repair pro 41.6 33 0.0011 24.3 4.2 55 12-66 129-184 (197)
35 2dak_A Ubiquitin carboxyl-term 41.1 20 0.00069 20.3 2.4 20 4-23 28-47 (63)
36 2di0_A Activating signal coint 41.0 15 0.00051 21.7 1.8 22 1-22 31-52 (71)
37 1veg_A NEDD8 ultimate buster-1 39.4 24 0.00082 21.5 2.7 20 4-23 48-67 (83)
38 3e7l_A Transcriptional regulat 38.9 37 0.0013 18.9 3.4 19 2-20 24-42 (63)
39 2dhy_A CUE domain-containing p 37.5 29 0.00098 20.2 2.7 20 3-22 38-57 (67)
40 1wiv_A UBP14, ubiquitin-specif 35.3 21 0.00073 21.0 1.9 18 4-21 48-65 (73)
41 1hp8_A HU-P8; leukemia, cystei 33.2 59 0.002 18.9 3.5 29 2-30 14-42 (68)
42 2k44_A Hsapbk, K+-channel volt 32.8 7.7 0.00026 18.2 -0.3 6 3-8 15-20 (28)
43 3ct6_A PTS-dependent dihydroxy 32.4 21 0.00073 23.6 1.8 42 99-153 58-99 (131)
44 2d9s_A CBL E3 ubiquitin protei 31.6 52 0.0018 18.1 2.9 21 3-23 27-47 (53)
45 1wj7_A Hypothetical protein (R 29.6 32 0.0011 21.9 2.1 20 4-23 59-78 (104)
46 2ooa_A E3 ubiquitin-protein li 29.3 59 0.002 17.8 2.9 21 3-23 29-49 (52)
47 1umq_A Photosynthetic apparatu 25.7 35 0.0012 20.5 1.8 19 2-20 46-64 (81)
48 3ncv_A DNA mismatch repair pro 24.5 39 0.0013 24.5 2.1 34 33-66 174-207 (220)
49 2dai_A Ubadc1, ubiquitin assoc 24.0 50 0.0017 20.0 2.2 19 4-22 48-66 (83)
50 3mvn_A UDP-N-acetylmuramate:L- 22.8 1.7E+02 0.0057 19.6 5.1 35 100-142 35-69 (163)
51 1whc_A RSGI RUH-027, UBA/UBX 3 22.7 73 0.0025 18.0 2.7 18 5-22 29-47 (64)
52 1zv1_A Doublesex protein; UBA 21.8 77 0.0026 18.0 2.5 20 6-25 34-53 (65)
53 1ufz_A Hypothetical protein BA 21.8 78 0.0027 19.2 2.7 19 5-23 57-75 (83)
54 1kdl_A YOPD protein; yersinia, 21.7 68 0.0023 14.6 1.8 17 120-136 3-19 (26)
55 2ka5_A Putative anti-sigma fac 21.2 1.6E+02 0.0056 18.5 5.4 50 102-154 53-102 (125)
56 2y9m_B Peroxisome assembly pro 20.3 82 0.0028 20.7 2.8 49 135-190 61-110 (130)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=9.5e-48 Score=303.92 Aligned_cols=189 Identities=20% Similarity=0.288 Sum_probs=172.2
Q ss_pred ChhhhHhhcCCCHHHHHHHHHHHHhHhhhcC--CCCcchhchHHHHhcCccee-cCCCCCCCCcEEEEEccccCCCCCCh
Q 029647 1 MILWFLKDRKFSIEESLAKLTKAIKWRQEFR--VSELNEDSVRGIAESGKAYV-HDFLDINERPVLIVVASKHLPAVHDP 77 (190)
Q Consensus 1 ~l~RfL~~~~~d~~~a~~~l~~~~~~R~~~~--~~~~~~~~~~~~~~~~~~~~-~g~~d~~G~pv~~~~~~~~~~~~~~~ 77 (190)
+|+||||+++||+++|.++|.++++||++++ +++++++++...++.|..++ +| +|++||||+++++|+++++.++.
T Consensus 94 ~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g-~Dk~GrpVii~r~g~~d~~~~~~ 172 (316)
T 3hx3_A 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSS-RDKYGRVVMLFNIENWQSQEITF 172 (316)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSS-CCTTSCEEEEEECTTCCTTTSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCC-CCCCCCEEEEEecccCCCCCCCH
Confidence 4899999999999999999999999999988 56778888888888998654 56 79999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhCCCCcccEEEEEeCCCCCCCC---CCHHHHHHHHHHHHhhccccccceEEEcCCcccHHHHHh
Q 029647 78 VEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTEN---ADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQL 154 (190)
Q Consensus 78 ~~~~r~~~~~~E~~~~~~~~~~~~~~~i~D~~g~~~~~---~~~~~~k~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~ 154 (190)
+++.|++++++|.++...+.+++|+++|+|++|+|++| ++++.+|.++.++|++||+|++++||||+|++|+++|++
T Consensus 173 ~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~i 252 (316)
T 3hx3_A 173 DEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNV 252 (316)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHH
Confidence 99999999999999876556688999999999999987 478899999999999999999999999999999999999
Q ss_pred hhhcccccc-CeeEEccch-hhhhhcCCCCCCCccccC
Q 029647 155 TKPLLKSYA-SLAKFCSVE-TVRKEYFTEATVPDNFRE 190 (190)
Q Consensus 155 ik~fl~~~~-~Ki~~~~~~-~~l~~~i~~~~lP~~~Gg 190 (190)
+||||++++ +||++.+++ +.+.++||+++||++|||
T Consensus 253 vkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~LP~eyGG 290 (316)
T 3hx3_A 253 VKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGG 290 (316)
T ss_dssp HGGGCCHHHHTTEEEEETCCHHHHHHSCGGGSBGGGTS
T ss_pred HHHhCCHHhhhheEEeCCCHHHHHhhCCHhhCcHhhCC
Confidence 999999987 999988543 445799999999999999
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.8e-47 Score=295.34 Aligned_cols=188 Identities=19% Similarity=0.330 Sum_probs=169.3
Q ss_pred ChhhhHhhcCCCHHHHHHHHHHHHhHhhhcC--CCCcchhchHHHHhcCcc-eecCCCCCCCCcEEEEEccccCCCCCCh
Q 029647 1 MILWFLKDRKFSIEESLAKLTKAIKWRQEFR--VSELNEDSVRGIAESGKA-YVHDFLDINERPVLIVVASKHLPAVHDP 77 (190)
Q Consensus 1 ~l~RfL~~~~~d~~~a~~~l~~~~~~R~~~~--~~~~~~~~~~~~~~~~~~-~~~g~~d~~G~pv~~~~~~~~~~~~~~~ 77 (190)
+|+||||+++||+++|.+++.++++||++++ .++++++++...++.|.. +++| +|++||||+++++|+++++.++.
T Consensus 35 ~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g-~D~~GrpV~i~~~~~~d~~~~~~ 113 (262)
T 1r5l_A 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRS-RDPTGSKVLIYRIAHWDPKVFTA 113 (262)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSS-CCTTCCEEEEEEGGGCCTTTSCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCC-cCCCCCEEEEEeccccCcccCCH
Confidence 4799999999999999999999999999987 245667778888888875 4566 79999999999999999998999
Q ss_pred hhhhHHHHHHHHHHHhhCCCCcccEEEEEeCCCCCCCCC---CHHHHHHHHHHHHhhccccccceEEEcCCcccHHHHHh
Q 029647 78 VEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA---DLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQL 154 (190)
Q Consensus 78 ~~~~r~~~~~~E~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~k~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~ 154 (190)
.++.|+.++++|.++++++.++.|+++|+|++|+|++|+ +++.++.++.++|++||+|++++||||+|++++++|++
T Consensus 114 ~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~ 193 (262)
T 1r5l_A 114 YDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSM 193 (262)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHH
Confidence 999999999999887765556789999999999999885 67899999999999999999999999999999999999
Q ss_pred hhhcccccc-CeeEEccch--hhhhhcCCCCCCCccccC
Q 029647 155 TKPLLKSYA-SLAKFCSVE--TVRKEYFTEATVPDNFRE 190 (190)
Q Consensus 155 ik~fl~~~~-~Ki~~~~~~--~~l~~~i~~~~lP~~~Gg 190 (190)
+||||++++ +||++++++ +.+.++|| ++||++|||
T Consensus 194 vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG 231 (262)
T 1r5l_A 194 IKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGG 231 (262)
T ss_dssp HGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTC
T ss_pred HHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCC
Confidence 999999997 999999753 45579999 999999999
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.6e-45 Score=289.12 Aligned_cols=189 Identities=21% Similarity=0.299 Sum_probs=161.6
Q ss_pred ChhhhHhhcCCCHHHHHHHHHHHHhHhhhcCCCCcchhc---hHHHH-hcCcceecCCCCCCCCcEEEEEccccCCCC--
Q 029647 1 MILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDS---VRGIA-ESGKAYVHDFLDINERPVLIVVASKHLPAV-- 74 (190)
Q Consensus 1 ~l~RfL~~~~~d~~~a~~~l~~~~~~R~~~~~~~~~~~~---~~~~~-~~~~~~~~g~~d~~G~pv~~~~~~~~~~~~-- 74 (190)
+|+||||+++||+++|.++|.++++||++++++++..+. ....+ +....+++| +|++||||+++++|+.++..
T Consensus 54 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~Dk~GrpV~i~~~g~~d~~~~~ 132 (296)
T 1aua_A 54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHK-TDKDGRPVYFEELGAVNLHEMN 132 (296)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEE-ECTTSCEEEEECGGGCCHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecc-cCCCCCEEEEEeeccCChHHhh
Confidence 489999999999999999999999999999877654321 11223 334456788 69999999999999987543
Q ss_pred --CChhhhhHHHHHHHHHHHhh--------CCCCcccEEEEEeCCCCCCCCCC--HHHHHHHHHHHHhhccccccceEEE
Q 029647 75 --HDPVEDEKLCVFFIEKALSK--------LPPGKEQILGIIDLRGFGTENAD--LKFLTFLFDVFYYYHPKRLGEVLFV 142 (190)
Q Consensus 75 --~~~~~~~r~~~~~~E~~~~~--------~~~~~~~~~~i~D~~g~~~~~~~--~~~~k~~~~~~~~~yP~~l~~i~iv 142 (190)
.+.+++.+++++.+|.+++. .+..++++++|+|++|+|++|++ .+.+|.++.++|++||+|++++|||
T Consensus 133 ~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~ii 212 (296)
T 1aua_A 133 KVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYII 212 (296)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEE
Confidence 57889999999999987653 13457899999999999999886 6889999999999999999999999
Q ss_pred cCCcccHHHHHhhhhcccccc-CeeEEccch--hhhhhcCCCCCCCccccC
Q 029647 143 EAPFVFKPFWQLTKPLLKSYA-SLAKFCSVE--TVRKEYFTEATVPDNFRE 190 (190)
Q Consensus 143 n~p~~~~~~~~~ik~fl~~~~-~Ki~~~~~~--~~l~~~i~~~~lP~~~Gg 190 (190)
|+|++|+++|+++||||++++ +||++++++ +.+.++||+++||++|||
T Consensus 213 N~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG 263 (296)
T 1aua_A 213 NAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 263 (296)
T ss_dssp SCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTS
T ss_pred CchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhCC
Confidence 999999999999999999997 999999763 445799999999999999
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.5e-45 Score=291.58 Aligned_cols=189 Identities=22% Similarity=0.323 Sum_probs=162.8
Q ss_pred ChhhhHhhcCCCHHHHHHHHHHHHhHhhhcCCCCcchhc----------hHHHHhcCcceecCCCCCCCCcEEEEEcccc
Q 029647 1 MILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDS----------VRGIAESGKAYVHDFLDINERPVLIVVASKH 70 (190)
Q Consensus 1 ~l~RfL~~~~~d~~~a~~~l~~~~~~R~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~d~~G~pv~~~~~~~~ 70 (190)
+|+||||+++||+++|.++|.++++||++++++++..+. .....+.+..+++| +|++||||+++++|+.
T Consensus 63 ~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g-~Dk~GRpV~i~r~g~~ 141 (320)
T 3q8g_A 63 TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHH-VDKDGRPLYFAELGGI 141 (320)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEE-ECTTCCEEEEEECTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecC-CCCCcCEEEEEecccc
Confidence 489999999999999999999999999999988765321 11223456678888 6999999999999998
Q ss_pred CCCC----CChhhhhHHHHHHHHHHHhh--------CCCCcccEEEEEeCCCCCCCCCC--HHHHHHHHHHHHhhccccc
Q 029647 71 LPAV----HDPVEDEKLCVFFIEKALSK--------LPPGKEQILGIIDLRGFGTENAD--LKFLTFLFDVFYYYHPKRL 136 (190)
Q Consensus 71 ~~~~----~~~~~~~r~~~~~~E~~~~~--------~~~~~~~~~~i~D~~g~~~~~~~--~~~~k~~~~~~~~~yP~~l 136 (190)
++.. .+.+++.+++++.+|.+++. .+..++++++|+|++|+|+++++ .+.+|.++.++|++||+|+
T Consensus 142 d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl 221 (320)
T 3q8g_A 142 NLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERM 221 (320)
T ss_dssp CHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCE
T ss_pred CHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhh
Confidence 8654 47788999999999987641 23346889999999999999875 6789999999999999999
Q ss_pred cceEEEcCCcccHHHHHhhhhcccccc-CeeEEccch--hhhhhcCCCCCCCccccC
Q 029647 137 GEVLFVEAPFVFKPFWQLTKPLLKSYA-SLAKFCSVE--TVRKEYFTEATVPDNFRE 190 (190)
Q Consensus 137 ~~i~ivn~p~~~~~~~~~ik~fl~~~~-~Ki~~~~~~--~~l~~~i~~~~lP~~~Gg 190 (190)
+++||||+|++++++|+++||||++++ +||++++++ +.+.++||+++||++|||
T Consensus 222 ~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG 278 (320)
T 3q8g_A 222 GKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGG 278 (320)
T ss_dssp EEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGGTS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCChhhCC
Confidence 999999999999999999999999997 999999763 445799999999999999
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.5e-44 Score=294.59 Aligned_cols=189 Identities=18% Similarity=0.207 Sum_probs=162.8
Q ss_pred ChhhhHhhcCCCHHHHHHHHHHHHhHhhhcCCCCcchhchHHHH-hcCcceecCCCCCCCCcEEEEEccccCCC----CC
Q 029647 1 MILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIA-ESGKAYVHDFLDINERPVLIVVASKHLPA----VH 75 (190)
Q Consensus 1 ~l~RfL~~~~~d~~~a~~~l~~~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~G~pv~~~~~~~~~~~----~~ 75 (190)
+|+||||+++||+++|.++|.++++||++++++++......+.+ +....+++| +|++||||+++++|++++. ..
T Consensus 37 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~g-~Dk~GrpV~~~~~g~~d~~~l~~~~ 115 (403)
T 1olm_A 37 FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCG-YDLDGCPVWYDIIGPLDAKGLLFSA 115 (403)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHHHHHHCCBEEEE-ECTTSCEEEEEECTTCCHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHhCCceeec-cCCCcCEEEEEecCCCChHHhhccC
Confidence 48999999999999999999999999999987765432111112 223345688 6999999999999998875 47
Q ss_pred ChhhhhHHHHHHHHHHHhhCC-------CCcccEEEEEeCCCCCCCCCC---HHHHHHHHHHHHhhccccccceEEEcCC
Q 029647 76 DPVEDEKLCVFFIEKALSKLP-------PGKEQILGIIDLRGFGTENAD---LKFLTFLFDVFYYYHPKRLGEVLFVEAP 145 (190)
Q Consensus 76 ~~~~~~r~~~~~~E~~~~~~~-------~~~~~~~~i~D~~g~~~~~~~---~~~~k~~~~~~~~~yP~~l~~i~ivn~p 145 (190)
+.+++.|++++++|.+++.++ .+++|+++|+|++|+|++++. ++.++.++.++|++||+|++++||||+|
T Consensus 116 ~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P 195 (403)
T 1olm_A 116 SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAP 195 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCC
Confidence 899999999999999987543 247899999999999999873 5789999999999999999999999999
Q ss_pred cccHHHHHhhhhcccccc-CeeEEccch--hhhhhcCCCCCCCccccC
Q 029647 146 FVFKPFWQLTKPLLKSYA-SLAKFCSVE--TVRKEYFTEATVPDNFRE 190 (190)
Q Consensus 146 ~~~~~~~~~ik~fl~~~~-~Ki~~~~~~--~~l~~~i~~~~lP~~~Gg 190 (190)
++|+++|+++||||++++ +||++++++ +.|.++||+++||++|||
T Consensus 196 ~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~yGG 243 (403)
T 1olm_A 196 KLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGG 243 (403)
T ss_dssp TTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTS
T ss_pred HHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhhCC
Confidence 999999999999999987 999999753 345799999999999999
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.58 E-value=1.7e-15 Score=115.72 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=106.2
Q ss_pred chHHHHhcCcceecCCCCCCCCcEEEEEccccCCCCCChhhhhHHHHHHHHHHHhhCCCCcccEEEEEeCCCCCCCCC-C
Q 029647 39 SVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA-D 117 (190)
Q Consensus 39 ~~~~~~~~~~~~~~g~~d~~G~pv~~~~~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~~~i~D~~g~~~~~~-~ 117 (190)
++...-+.+..+..| .|++|+||+++.+++..+...+.+.+..++...++.. - .+...+|+|+++.+..+. +
T Consensus 3 d~~~i~~~~ify~~G-~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~----~--~~~y~lV~d~T~~~~~n~p~ 75 (256)
T 3pg7_A 3 EFKALKTLSIFYQAG-TSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPY----Y--AKPYEIVVDLTHTGPSNRFK 75 (256)
T ss_dssp TTTTHHHHTSEEEEE-ECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTT----T--TSCEEEEEECTTCCGGGCCC
T ss_pred chhHHHHcCCEEEcC-cCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHh----c--CCCeEEEEECCCCCcccCCc
Confidence 344444567777778 7999999999999998766555444444433333322 1 347999999999998765 5
Q ss_pred HHHHHHHHHHHHhhccccccceEEEcCCcccHHHHHhh-hhcccccc-CeeEEccchhhhhhcCCCCCC
Q 029647 118 LKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLT-KPLLKSYA-SLAKFCSVETVRKEYFTEATV 184 (190)
Q Consensus 118 ~~~~k~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~i-k~fl~~~~-~Ki~~~~~~~~l~~~i~~~~l 184 (190)
.++++.+.+++...|...++++|++|++++++..++.+ ++|.+.+. +|++++++.+.+.++|+.++|
T Consensus 76 ~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 76 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGTSCGGGC
T ss_pred HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhhcCHHHc
Confidence 78999999999999999999999999999999777665 44544454 899999877766899987665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=106.84 Aligned_cols=132 Identities=12% Similarity=0.044 Sum_probs=92.2
Q ss_pred cCcceecCCCCCCCCcEEEEEccccCCCCCChhhhhHHHHHHHHHHHhhCCCCcccEEEEEeCCCCCCCCC-CHHHHHHH
Q 029647 46 SGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA-DLKFLTFL 124 (190)
Q Consensus 46 ~~~~~~~g~~d~~G~pv~~~~~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~k~~ 124 (190)
.+.++.+|..|++|+||+++.+++.+....+.+.+.- +.+..+ ...- ....++|+|+++.+..+- +.++++.+
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly---~il~tl-~~~~--~~~y~lV~D~T~~~~~n~p~~~~l~~~ 101 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIY---HVLLTL-KPYY--AKPYEIVVDLTHTGPSNRFKTDFLSKW 101 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHH---HHHHHH-TTTT--TSCEEEEEECTTCCGGGCCCHHHHGGG
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHH---HHHHHH-HHhc--CCCeEEEEEcCCCCccCCChHHHHHHH
Confidence 3344444337999999999999998766555444443 333333 2211 358999999999998764 68899999
Q ss_pred HHHHHhhccccccceEEEcCCcccHHHH-Hhhhhcccccc-CeeEEccchhhhhhcCCCCC
Q 029647 125 FDVFYYYHPKRLGEVLFVEAPFVFKPFW-QLTKPLLKSYA-SLAKFCSVETVRKEYFTEAT 183 (190)
Q Consensus 125 ~~~~~~~yP~~l~~i~ivn~p~~~~~~~-~~ik~fl~~~~-~Ki~~~~~~~~l~~~i~~~~ 183 (190)
.+++...|+..++++|++|+|.+++..+ ...+++.+.+. +|+.+++....+.+++++++
T Consensus 102 ~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~~L~~~i~~~~ 162 (290)
T 3peg_A 102 FVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQ 162 (290)
T ss_dssp GTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSCC---------
T ss_pred HHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHHHHHhhCCHHH
Confidence 9999999999999999999999988754 57777777765 88888754433567777664
No 8
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=72.17 E-value=2.1 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=15.3
Q ss_pred hhhHhhcCCCHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKL 20 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l 20 (190)
..||..++||++.|...+
T Consensus 24 ~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 24 RFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 468999999999998765
No 9
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=70.20 E-value=2.4 Score=22.70 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=13.8
Q ss_pred hhHhhcCCCHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAK 19 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~ 19 (190)
.||.+++||++.|...
T Consensus 26 ~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 26 TLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHTTTCHHHHHTT
T ss_pred HHHHHcCCcHHHHHHH
Confidence 5899999999999753
No 10
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=67.34 E-value=13 Score=24.28 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=55.7
Q ss_pred CChhhhhHHHHHHHHHHHhhCCCCcccEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhccccccceEEEcCCcccHHHHHh
Q 029647 75 HDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQL 154 (190)
Q Consensus 75 ~~~~~~~r~~~~~~E~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~k~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~ 154 (190)
.+.+++.. +.-.+|..+...+ ..++.+++|+++ +...++..+-.=++.--.|. ....++=||-.+.|.+.+-++
T Consensus 30 lt~~d~~~-l~~~l~~~l~~~~--~~~i~ll~~~~~--f~G~~~~a~~~d~k~~~~h~-~~~~RiAvV~d~~W~~~~~~~ 103 (126)
T 2q3l_A 30 LTHEDYEQ-MTPLLESALAGIK--TPEIVALIDITE--LDGLSLHAAWDDLKLGLKHG-KEFKRVAIIGQGELQEWATRV 103 (126)
T ss_dssp ECHHHHHH-HHHHHHHHTTTCC--SSCEEEEEEEEE--EEEECHHHHHHHHHHHHHHG-GGEEEEEEECCSHHHHHHHHH
T ss_pred ECHHHHHH-HHHHHHHHHHhCC--CceEEEEEEecC--CCCCCHHHHHHHHHhhhhHH-hcCCEEEEEcChHHHHHHHHH
Confidence 56788876 5566776655421 223778888764 23344443322233333554 778999999999999999999
Q ss_pred hhhccccccCeeEEc
Q 029647 155 TKPLLKSYASLAKFC 169 (190)
Q Consensus 155 ik~fl~~~~~Ki~~~ 169 (190)
.++|++. .+++.
T Consensus 104 ~~~~~~~---evk~F 115 (126)
T 2q3l_A 104 ANWFTPG---EFKFF 115 (126)
T ss_dssp HHHHCSS---EEEEE
T ss_pred HhhccCC---ceecc
Confidence 9999776 35544
No 11
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=67.26 E-value=4.3 Score=20.57 Aligned_cols=17 Identities=12% Similarity=0.002 Sum_probs=11.8
Q ss_pred hhHhhcCCCHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKL 20 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l 20 (190)
+-|+.+++|++.|...|
T Consensus 23 ~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 23 QALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 55777777777776643
No 12
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=66.13 E-value=5.2 Score=22.21 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.2
Q ss_pred hhhHhhcCCCHHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~~ 23 (190)
++-|+..++|+++|++.|...
T Consensus 28 ~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 28 LQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 467889999999999888654
No 13
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.70 E-value=4.4 Score=23.18 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=15.5
Q ss_pred hhhHhhcCCCHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKL 20 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l 20 (190)
..||..++||++.|+..+
T Consensus 34 ~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 34 KHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp HHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 368999999999998766
No 14
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=63.54 E-value=5 Score=21.46 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=15.6
Q ss_pred hhhHhhcCCCHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLT 21 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~ 21 (190)
.+-|++.++|+++|.+.|.
T Consensus 26 ~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 26 VAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 4668899999999988764
No 15
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.51 E-value=4.8 Score=23.46 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=15.9
Q ss_pred hhhHhhcCCCHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLT 21 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~ 21 (190)
..||..++||++.|+..+-
T Consensus 38 ~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 38 RHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp HHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 4689999999999987764
No 16
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=62.19 E-value=5.1 Score=22.66 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.8
Q ss_pred hhhHhhcCCCHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~ 22 (190)
.+-|++.++|+++|++.|..
T Consensus 36 ~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 36 VAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHh
Confidence 46789999999999988754
No 17
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=60.44 E-value=6.5 Score=21.42 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.7
Q ss_pred hhhHhhcCCCHHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~~ 23 (190)
-+.|..+++|+++|...|.+-
T Consensus 24 k~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 24 QVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhc
Confidence 457899999999999998654
No 18
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.06 E-value=8.2 Score=22.54 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=17.6
Q ss_pred hhhHhhcCCCHHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~~ 23 (190)
++-|++.++|+++|++.|.++
T Consensus 38 ~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 38 LQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 577999999999999988653
No 19
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=58.35 E-value=8 Score=21.27 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=15.1
Q ss_pred hhhHhhcCCCHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~ 22 (190)
.+-|+++++|+++|++.|..
T Consensus 30 ~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 30 LQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 35578888888888887754
No 20
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.60 E-value=7.1 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.5
Q ss_pred hhhHhhcCCCHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKL 20 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l 20 (190)
..||..++||++.|...+
T Consensus 36 ~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 36 KQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 368999999999998776
No 21
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=56.95 E-value=8.8 Score=21.09 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=17.2
Q ss_pred hhhhHhhcCCCHHHHHHHHH
Q 029647 2 ILWFLKDRKFSIEESLAKLT 21 (190)
Q Consensus 2 l~RfL~~~~~d~~~a~~~l~ 21 (190)
|-|.|.+.++|+.+|.+.|.
T Consensus 29 Lt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 29 LTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHccCCHHHHHHHhh
Confidence 45889999999999998774
No 22
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.48 E-value=10 Score=21.07 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=16.5
Q ss_pred hhhHhhcCCCHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~ 22 (190)
.+-|+.+++|+++|+..|.+
T Consensus 28 ~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 28 LRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp HHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 36689999999999888754
No 23
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=55.96 E-value=7.1 Score=21.09 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=13.7
Q ss_pred hhHhhcCCCHHHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l~~ 22 (190)
+-|+++++|+++|.+-|..
T Consensus 27 ~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 27 AALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHh
Confidence 4577788888888776643
No 24
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=55.54 E-value=4.9 Score=30.64 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=22.3
Q ss_pred cceEEEcCCcccHHHHHhhhhccccc
Q 029647 137 GEVLFVEAPFVFKPFWQLTKPLLKSY 162 (190)
Q Consensus 137 ~~i~ivn~p~~~~~~~~~ik~fl~~~ 162 (190)
+.++|||+||.+.-..+-+-|+|.+.
T Consensus 238 sGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 238 CGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred eeEEEECCchhHHHHHHHHHHHHHHH
Confidence 67999999999998888888887773
No 25
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=54.99 E-value=11 Score=21.34 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=18.2
Q ss_pred hhhHhhcCCCHHHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTKAI 24 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~~~ 24 (190)
.++|..++||.++|.+...+..
T Consensus 26 ~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 26 QKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHH
Confidence 4789999999999999876544
No 26
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=52.09 E-value=12 Score=21.19 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=16.9
Q ss_pred hhhHhhcCCCHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~ 22 (190)
-.-|+++++|++.|.+.|.+
T Consensus 29 ~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 29 RSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHc
Confidence 45689999999999999854
No 27
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=51.22 E-value=11 Score=22.52 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=16.5
Q ss_pred hhhHhhcCCCHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~ 22 (190)
++-|++.++|+++|++.|..
T Consensus 48 ~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 48 LQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHh
Confidence 46789999999999988753
No 28
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=50.14 E-value=11 Score=20.60 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=13.1
Q ss_pred hhhHhhcCCCHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKL 20 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l 20 (190)
.+-|+++++|+++|.+.|
T Consensus 31 ~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 31 LQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 345777888888887765
No 29
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=48.11 E-value=11 Score=19.47 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=10.7
Q ss_pred hhHhhcCCCHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKL 20 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l 20 (190)
+=|+.+++|++.|.+-|
T Consensus 23 ~AL~~~~~n~e~A~~~L 39 (43)
T 2g3q_A 23 NALEKCNWDLEAATNFL 39 (43)
T ss_dssp HHHHHHTSCHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHH
Confidence 34666667777776654
No 30
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=46.57 E-value=19 Score=20.59 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=13.3
Q ss_pred hhHhhcCCCHHHHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l~~~ 23 (190)
+-|+++++|+++|.+-|..+
T Consensus 28 ~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 28 QALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHC
Confidence 45677777777777666543
No 31
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=46.45 E-value=14 Score=20.72 Aligned_cols=20 Identities=5% Similarity=0.243 Sum_probs=17.5
Q ss_pred hhhHhhcCCCHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~ 22 (190)
.++|...+||.++|.....+
T Consensus 25 ~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 25 FMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 46899999999999998876
No 32
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=43.59 E-value=17 Score=21.01 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=18.7
Q ss_pred hHhhcCCCHHHHHHHHHHH---HhHhhh
Q 029647 5 FLKDRKFSIEESLAKLTKA---IKWRQE 29 (190)
Q Consensus 5 fL~~~~~d~~~a~~~l~~~---~~~R~~ 29 (190)
-|..+++|+++|...|++- ..|.+.
T Consensus 30 AL~e~~GDi~~Ai~~Lr~kg~~~a~kKA 57 (64)
T 2cp9_A 30 ALETCGGDLKQAEIWLHKEAQKEGWSKA 57 (64)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHcCCCHHHHHHHHHHHhHHHHHHHH
Confidence 3778899999999999865 345443
No 33
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=41.67 E-value=15 Score=21.80 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=12.4
Q ss_pred hhHhhcCCCHHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKLT 21 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l~ 21 (190)
+-|+.+++|+++|.+.|.
T Consensus 48 ~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 48 VALAAADDDLTVAVEILM 65 (73)
T ss_dssp HHHHHHTSCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHH
Confidence 456777777777776664
No 34
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=41.63 E-value=33 Score=24.27 Aligned_cols=55 Identities=13% Similarity=0.267 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhHhhhcCC-CCcchhchHHHHhcCcceecCCCCCCCCcEEEEE
Q 029647 12 SIEESLAKLTKAIKWRQEFRV-SELNEDSVRGIAESGKAYVHDFLDINERPVLIVV 66 (190)
Q Consensus 12 d~~~a~~~l~~~~~~R~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~G~pv~~~~ 66 (190)
+.++..+.+....+=|.+... +.++.++....++.-..+-.++..+.|||+++--
T Consensus 129 ~~~~~~~~~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l 184 (197)
T 3kdg_A 129 DIKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHH 184 (197)
T ss_dssp CHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEE
T ss_pred CHHHHHHHHHHHHhhHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEe
Confidence 344444444444444444433 5577777766665444444455688899988754
No 35
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.09 E-value=20 Score=20.32 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=12.3
Q ss_pred hhHhhcCCCHHHHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l~~~ 23 (190)
+-|+++++|++.|.+-|..+
T Consensus 28 ~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 28 KALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhC
Confidence 34666666777766666544
No 36
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=41.00 E-value=15 Score=21.71 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.5
Q ss_pred ChhhhHhhcCCCHHHHHHHHHH
Q 029647 1 MILWFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 1 ~l~RfL~~~~~d~~~a~~~l~~ 22 (190)
|+.+.|..++.|+|.+...|.+
T Consensus 31 fi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 31 FILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHc
Confidence 3568899999999999998854
No 37
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.44 E-value=24 Score=21.47 Aligned_cols=20 Identities=10% Similarity=-0.072 Sum_probs=14.8
Q ss_pred hhHhhcCCCHHHHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l~~~ 23 (190)
+-|+.+++|+++|.+-|..+
T Consensus 48 ~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 48 AALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhC
Confidence 45778888888888777554
No 38
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=38.89 E-value=37 Score=18.90 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=15.1
Q ss_pred hhhhHhhcCCCHHHHHHHH
Q 029647 2 ILWFLKDRKFSIEESLAKL 20 (190)
Q Consensus 2 l~RfL~~~~~d~~~a~~~l 20 (190)
+.+-|..+++|+.+|++.+
T Consensus 24 i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 24 IEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4566788889999888877
No 39
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.48 E-value=29 Score=20.16 Aligned_cols=20 Identities=10% Similarity=0.243 Sum_probs=16.6
Q ss_pred hhhHhhcCCCHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~ 22 (190)
-.-|+++++|++.|.+.|.+
T Consensus 38 ~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 38 ECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 45688999999999998854
No 40
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=35.27 E-value=21 Score=21.01 Aligned_cols=18 Identities=22% Similarity=-0.007 Sum_probs=11.5
Q ss_pred hhHhhcCCCHHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKLT 21 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l~ 21 (190)
+-|+++++|+++|++-|.
T Consensus 48 ~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 48 KALKASGGDIEKATDWVF 65 (73)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHH
Confidence 446667777777766554
No 41
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=33.18 E-value=59 Score=18.93 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=25.8
Q ss_pred hhhhHhhcCCCHHHHHHHHHHHHhHhhhc
Q 029647 2 ILWFLKDRKFSIEESLAKLTKAIKWRQEF 30 (190)
Q Consensus 2 l~RfL~~~~~d~~~a~~~l~~~~~~R~~~ 30 (190)
+...|..++||.++....+..+.+.++.+
T Consensus 14 iQ~CL~~N~yd~skCq~~id~L~eCc~~~ 42 (68)
T 1hp8_A 14 IQKCLQANSYMESKCQAVIQELRKCCAQY 42 (68)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999876
No 42
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=32.76 E-value=7.7 Score=18.22 Aligned_cols=6 Identities=50% Similarity=0.877 Sum_probs=3.8
Q ss_pred hhhHhh
Q 029647 3 LWFLKD 8 (190)
Q Consensus 3 ~RfL~~ 8 (190)
+||||+
T Consensus 15 LRFLRA 20 (28)
T 2k44_A 15 LRFLRA 20 (28)
T ss_dssp STTCTT
T ss_pred HHHHHH
Confidence 567665
No 43
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=32.43 E-value=21 Score=23.60 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=24.7
Q ss_pred cccEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhccccccceEEEcCCcccHHHHH
Q 029647 99 KEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQ 153 (190)
Q Consensus 99 ~~~~~~i~D~~g~~~~~~~~~~~k~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~ 153 (190)
.+++.++.|+ |-+..|.... + .... .++.++|.|.+...+-.
T Consensus 58 ~dgVlvltDL-Ggsp~N~~~a-------l-~~~~----~~v~viNlPmvega~~a 99 (131)
T 3ct6_A 58 ADNLLTFFDL-GSARMNLDLV-------S-EMTD----KELTIFNVPLIEGAYTA 99 (131)
T ss_dssp CSEEEEEESS-GGGHHHHHHH-------H-HTCS----SEEEECCSCHHHHHHHH
T ss_pred CCCEEEEEeC-CCChHHHHHH-------H-HhcC----CCEEEEEhhHHHHHHHH
Confidence 3799999999 5442111111 1 1111 37888899999655554
No 44
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.60 E-value=52 Score=18.12 Aligned_cols=21 Identities=19% Similarity=-0.095 Sum_probs=15.0
Q ss_pred hhhHhhcCCCHHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~~ 23 (190)
.|-|...++|++-|...|.++
T Consensus 27 i~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 27 QKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh
Confidence 355777778888888777654
No 45
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.56 E-value=32 Score=21.92 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=15.0
Q ss_pred hhHhhcCCCHHHHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l~~~ 23 (190)
.-|..++||+++|...|..-
T Consensus 59 ~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 59 IALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHhC
Confidence 45778888988888887543
No 46
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=29.32 E-value=59 Score=17.79 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=14.8
Q ss_pred hhhHhhcCCCHHHHHHHHHHH
Q 029647 3 LWFLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 3 ~RfL~~~~~d~~~a~~~l~~~ 23 (190)
.+-|+..++|++-|...|.++
T Consensus 29 i~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 29 KRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 456777778888877777654
No 47
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=25.73 E-value=35 Score=20.49 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=15.4
Q ss_pred hhhhHhhcCCCHHHHHHHH
Q 029647 2 ILWFLKDRKFSIEESLAKL 20 (190)
Q Consensus 2 l~RfL~~~~~d~~~a~~~l 20 (190)
+.+-|..+++|+.+|++.|
T Consensus 46 I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 46 IQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHh
Confidence 4567888899999998876
No 48
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=24.45 E-value=39 Score=24.50 Aligned_cols=34 Identities=9% Similarity=0.057 Sum_probs=22.1
Q ss_pred CCcchhchHHHHhcCcceecCCCCCCCCcEEEEE
Q 029647 33 SELNEDSVRGIAESGKAYVHDFLDINERPVLIVV 66 (190)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~g~~d~~G~pv~~~~ 66 (190)
+.++.++....++.-..+-.++..+.|||+++--
T Consensus 174 ~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i~l 207 (220)
T 3ncv_A 174 RRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKL 207 (220)
T ss_dssp CCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCCcCCCCCcEEEEe
Confidence 4566677666665444444455688899988754
No 49
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.96 E-value=50 Score=19.96 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=11.3
Q ss_pred hhHhhcCCCHHHHHHHHHH
Q 029647 4 WFLKDRKFSIEESLAKLTK 22 (190)
Q Consensus 4 RfL~~~~~d~~~a~~~l~~ 22 (190)
+-|+++++|++.|.+-|..
T Consensus 48 ~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 48 KALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3456666666666665543
No 50
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=22.82 E-value=1.7e+02 Score=19.62 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=18.9
Q ss_pred ccEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhccccccceEEE
Q 029647 100 EQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFV 142 (190)
Q Consensus 100 ~~~~~i~D~~g~~~~~~~~~~~k~~~~~~~~~yP~~l~~i~iv 142 (190)
+++++|.|. + -++.-++..++.+.+.||. ++++++
T Consensus 35 ~g~~vi~Dy-a-----HnP~si~a~l~al~~~~~~--~riivv 69 (163)
T 3mvn_A 35 NNITVYDDF-A-----HHPTAITATIDALRAKVGQ--QRILAV 69 (163)
T ss_dssp TTEEEEEEC-C-----CSHHHHHHHHHHHHHHHTT--SCEEEE
T ss_pred CCcEEEEcC-C-----CCHHHHHHHHHHHHHhcCC--CcEEEE
Confidence 356666662 1 2455566666666666664 244444
No 51
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.67 E-value=73 Score=18.03 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=9.7
Q ss_pred hHhhc-CCCHHHHHHHHHH
Q 029647 5 FLKDR-KFSIEESLAKLTK 22 (190)
Q Consensus 5 fL~~~-~~d~~~a~~~l~~ 22 (190)
-|+++ ++|++.|++-|..
T Consensus 29 AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 29 ALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp HHHHHTSCCHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 35555 4566666555543
No 52
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=21.80 E-value=77 Score=18.04 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=16.2
Q ss_pred HhhcCCCHHHHHHHHHHHHh
Q 029647 6 LKDRKFSIEESLAKLTKAIK 25 (190)
Q Consensus 6 L~~~~~d~~~a~~~l~~~~~ 25 (190)
|...+-|+++|.++|.+...
T Consensus 34 LK~A~~d~eeAsrrI~Eg~~ 53 (65)
T 1zv1_A 34 LKDADANIEEASRRIEEGQY 53 (65)
T ss_dssp HHHTTTCHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHH
Confidence 66778899999999987543
No 53
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=21.75 E-value=78 Score=19.18 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=14.7
Q ss_pred hHhhcCCCHHHHHHHHHHH
Q 029647 5 FLKDRKFSIEESLAKLTKA 23 (190)
Q Consensus 5 fL~~~~~d~~~a~~~l~~~ 23 (190)
-.-.++||+++|...+.+-
T Consensus 57 ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 57 AILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhc
Confidence 3456799999999988654
No 54
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.68 E-value=68 Score=14.62 Aligned_cols=17 Identities=12% Similarity=0.254 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhccccc
Q 029647 120 FLTFLFDVFYYYHPKRL 136 (190)
Q Consensus 120 ~~k~~~~~~~~~yP~~l 136 (190)
++|.+++++|.++-...
T Consensus 3 fMkDvlql~qQy~qsh~ 19 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSSHT 19 (26)
T ss_dssp HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888888888875443
No 55
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=21.23 E-value=1.6e+02 Score=18.51 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHHhhccccccceEEEcCCcccHHHHHh
Q 029647 102 ILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQL 154 (190)
Q Consensus 102 ~~~i~D~~g~~~~~~~~~~~k~~~~~~~~~yP~~l~~i~ivn~p~~~~~~~~~ 154 (190)
-.+|+|+++++. ++.+-+..+..+.+.. -++=..+.++|++.-++-++.+
T Consensus 53 ~~vvlDls~V~~--iDSsGl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~ 102 (125)
T 2ka5_A 53 NKIFLVLSDVES--IDSFSLGVIVNILKSI-SSSGGFFALVSPNEKVERVLSL 102 (125)
T ss_dssp CEEEEECTTCSC--CCHHHHHHHHHHHHHH-HHHTCEEEEECCCHHHHHHHHH
T ss_pred CEEEEECCCCCE--EcHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHH
Confidence 368999999874 3444444433332222 2333678999999877766665
No 56
>2y9m_B Peroxisome assembly protein 22; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9o_B 2y9p_B
Probab=20.32 E-value=82 Score=20.73 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=26.2
Q ss_pred cccceEEEcCCcccHHHHHhhhhccccccCeeEEccchhhh-hhcCCCCCCCccccC
Q 029647 135 RLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVR-KEYFTEATVPDNFRE 190 (190)
Q Consensus 135 ~l~~i~ivn~p~~~~~~~~~ik~fl~~~~~Ki~~~~~~~~l-~~~i~~~~lP~~~Gg 190 (190)
-=++|+..+. ++..|+.+|.+=+. ..-++ ++++. .--++.+.+|.+.|+
T Consensus 61 ~nyKIi~Csn---~qG~ws~vK~Lkk~---~LL~c-SdDl~~~~g~~~~~vP~Dl~r 110 (130)
T 2y9m_B 61 NEHKIIYCDS---MDGLWSCVRRLGKF---QCILN-SRDFTSSGGSDAAVVPEDIGR 110 (130)
T ss_dssp CGGGEEEESC---HHHHHHHHHHHCCS---EEEEC-GGGTC-------CCSCTTGGG
T ss_pred CcceEEEecc---HHHHHHHHHhcCCc---eEEEe-chhhccccCcCcccCchHHHH
Confidence 3345555554 58899999988333 23333 44441 245788899988763
Done!