Query 029649
Match_columns 190
No_of_seqs 107 out of 238
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 03:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3owt_C Regulatory protein SIR3 34.0 13 0.00044 21.7 0.8 16 14-29 12-27 (27)
2 3j01_A Preprotein translocase 28.9 1.5E+02 0.0053 26.8 7.4 106 57-170 308-426 (435)
3 2rdd_B UPF0092 membrane protei 28.8 65 0.0022 19.4 3.4 26 139-165 7-32 (37)
4 3r84_A Mediator of RNA polymer 28.1 33 0.0011 25.0 2.3 23 152-174 61-86 (86)
5 3din_C Preprotein translocase 25.7 1.5E+02 0.0052 26.8 6.8 107 57-170 304-422 (431)
6 3k3f_A UREA transporter; membr 20.3 84 0.0029 27.7 3.8 23 129-151 287-310 (340)
7 3dl8_G Preprotein translocase 16.9 1.3E+02 0.0046 27.1 4.4 106 57-169 309-426 (429)
8 1v74_A Colicin D; colicin D - 13.7 76 0.0026 24.1 1.6 12 155-166 12-23 (107)
9 2hac_A T-cell surface glycopro 12.6 1.5E+02 0.0051 18.1 2.4 19 140-158 10-28 (33)
10 2pif_A UPF0317 protein pspto_5 11.0 32 0.0011 30.1 -1.4 6 135-140 226-231 (276)
No 1
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=34.01 E-value=13 Score=21.67 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhc
Q 029649 14 KWKSDFSRKFQYYLDK 29 (190)
Q Consensus 14 ~~~~~~~~~yq~~LDk 29 (190)
...++++.+||..||+
T Consensus 12 atlsklkkkyqiildr 27 (27)
T 3owt_C 12 ATLSKLKKKYQIILDR 27 (27)
T ss_pred HHHHHHHhhheeeecC
Confidence 3468899999999985
No 2
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=28.91 E-value=1.5e+02 Score=26.80 Aligned_cols=106 Identities=17% Similarity=0.374 Sum_probs=56.7
Q ss_pred cEEEehhHHHHHHHHHHHhhcCCCCCchhhh----ccCCCCCCCCCC-CCCCcccC-CchhHHHHHHHHHHHHHH---HH
Q 029649 57 GFYIVTYGLGIYILNLLIGFLSPSVDPELEA----LNTASLPTKGSD-EFKPFVRR-LPEFKFWYALTKAFVVAF---FL 127 (190)
Q Consensus 57 g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~----~dg~~lp~~~~~-EFrPFiRR-LPEFkFW~~~tra~~ia~---~~ 127 (190)
-.|++.|++-|....-|-.++ .+||+... +.|...|.-+.. +=.-++.| +|-. ....|+.+++ +.
T Consensus 308 ~~~~~~y~~lii~F~~fyt~i--~~np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~ri----t~~Ga~~L~~iavlP 381 (435)
T 3j01_A 308 PLYVLLYASAIIFFCFFYTAL--VFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRL----TLVGALYITFICLIP 381 (435)
T ss_dssp GGGTHHHHHHHHHHHHHHHHH--SSCTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHH----CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 357788888888888887777 57887542 356666654432 11112211 2222 2233344443 33
Q ss_pred Hhhc-cccccchh---HHHHHHHHHHHHHHHHHHHHHHhhhCcccCC
Q 029649 128 TFFS-VLDVPVFW---PILLCYWIFLFVLTMKRQILHMIKYKYVPFN 170 (190)
Q Consensus 128 Tff~-~fDiPVfW---PiLl~Yfi~Lf~ltm~rqI~HMiKy~YvPf~ 170 (190)
.+.. .+++|.+- -+|++ +..-.=|+++--.||+.++|-.|-
T Consensus 382 ~~l~~~~~~~~~~gGTslLI~--VgV~ldt~~qi~s~l~~~~Y~g~~ 426 (435)
T 3j01_A 382 EFMRDAMKVPFYFGGTSLLIV--VVVIMDFMAQVQTLMMSSQYESAL 426 (435)
T ss_dssp HHTTSCCSSSSSSCCHHHHHT--HHHHHHHHHHHHHHTSCCCCCCSC
T ss_pred HHHHHhhccCeecccHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 35677442 12222 122223555555688999999884
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=28.78 E-value=65 Score=19.45 Aligned_cols=26 Identities=8% Similarity=0.271 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 029649 139 WPILLCYWIFLFVLTMKRQILHMIKYK 165 (190)
Q Consensus 139 WPiLl~Yfi~Lf~ltm~rqI~HMiKy~ 165 (190)
+|+++ -+.+.+++..|-|-|...+++
T Consensus 7 l~~v~-~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 7 LMLVV-FGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHH-HHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHHhhhHHHHHHHHH
Confidence 44333 344555666788888777764
No 4
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=28.14 E-value=33 Score=25.04 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=14.9
Q ss_pred HHHHHHHHHH---hhhCcccCCCCcc
Q 029649 152 LTMKRQILHM---IKYKYVPFNIGKP 174 (190)
Q Consensus 152 ltm~rqI~HM---iKy~YvPf~~gK~ 174 (190)
..|||||+|| |--+-+|-+.+||
T Consensus 61 v~LrkEIk~LdEnig~~~LPinv~~k 86 (86)
T 3r84_A 61 TQLRKEIQLLDENVGTRLLPINVNKK 86 (86)
T ss_dssp HHHHHHHHHHHHTBTTTBCCC-----
T ss_pred HHHHHHHHHHHHccCCeeecccCCCC
Confidence 4789999999 6677788777664
No 5
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=25.69 E-value=1.5e+02 Score=26.79 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=55.8
Q ss_pred cEEEehhHHHHHHHHHHHhhcCCCCCchhhh----ccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHH---Hh
Q 029649 57 GFYIVTYGLGIYILNLLIGFLSPSVDPELEA----LNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFL---TF 129 (190)
Q Consensus 57 g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~----~dg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~---Tf 129 (190)
-.|++.|++.|.+..-|-.+++ +||+... +.|...|.-+.. ||=.+-|-.--.=.....|+.+++++ .+
T Consensus 304 ~~y~~~y~~lii~Fs~fy~~i~--~np~diA~~lkk~G~~IpGiRpG--~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~ 379 (431)
T 3din_C 304 FLYLLIYGLLVFFFTYFYSVVI--FDPREISENIRKYGGYIPGLRPG--RSTEQYLHRVLNRVTFIGAVFLVVIALLPYL 379 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT--THHHHHTTSCCCCBCSSCCCCCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcCCCCCCC--hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567788888888888888886 8887542 234445543332 22111111111112233344444433 44
Q ss_pred hcc-ccccchhH---HHHHHHHHHHHH-HHHHHHHHHhhhCcccCC
Q 029649 130 FSV-LDVPVFWP---ILLCYWIFLFVL-TMKRQILHMIKYKYVPFN 170 (190)
Q Consensus 130 f~~-fDiPVfWP---iLl~Yfi~Lf~l-tm~rqI~HMiKy~YvPf~ 170 (190)
... +++|.+-. +|+ ++-.++ |+++-=.|++.++|-.|-
T Consensus 380 ~~~~~g~~~~~gGTslLI---~Vgv~l~~~~qi~s~~~~~~Y~g~~ 422 (431)
T 3din_C 380 VQGAIKVNVWIGGTSALI---AVGVALDIIQQMETHMVMRHYEGFI 422 (431)
T ss_dssp HTTTSCCSCCTTHHHHHH---HHHHHHHHHHHHHHHCCCCCSSTTC
T ss_pred HHHHhCCCccccchhhhh---hHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 443 56774432 232 122233 444444688899999884
No 6
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=20.35 E-value=84 Score=27.71 Aligned_cols=23 Identities=35% Similarity=1.146 Sum_probs=18.3
Q ss_pred hhccccccch-hHHHHHHHHHHHH
Q 029649 129 FFSVLDVPVF-WPILLCYWIFLFV 151 (190)
Q Consensus 129 ff~~fDiPVf-WPiLl~Yfi~Lf~ 151 (190)
++.-+++|++ ||.-+.=|++|..
T Consensus 287 ~l~~~glP~lT~PFvl~twl~ll~ 310 (340)
T 3k3f_A 287 LLSPIGMPALTWPFIVVTWLFLFA 310 (340)
T ss_dssp HTGGGTCCCTTHHHHHHHHHHHHH
T ss_pred HHhhcCCcccCHhHHHHHHHHHHH
Confidence 5567899998 9988888887743
No 7
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=16.86 E-value=1.3e+02 Score=27.13 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=53.0
Q ss_pred cEEEehhHHHHHHHHHHHhhcCCCCCchhhh----ccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHH---HHh
Q 029649 57 GFYIVTYGLGIYILNLLIGFLSPSVDPELEA----LNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFF---LTF 129 (190)
Q Consensus 57 g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~----~dg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~---~Tf 129 (190)
-.|.+.|++.|.+..-|-.+++ +||+... +.|...|.-+.. +|=.+-|-.--.=.....|+.++++ ..+
T Consensus 309 ~~y~~~y~~lii~Fs~fy~~i~--~np~diA~~lkk~G~~IpGiRpG--~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~ 384 (429)
T 3dl8_G 309 IFYNFLYVTFIVFFTYFYTAVL--INPVELAENLHKAGAFIPGVRPG--QDTVKYLERIINRLIFFGALFLSVIALIPIL 384 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT--THHHHHHHTCCCCBSSSBCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHCCCcCCCCCCC--hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3577888888888888888886 8887542 234444443322 0111111111111122333334433 344
Q ss_pred hcc-ccccchh---HHHHHHHHHHHHHHHHHHH-HHHhhhCcccC
Q 029649 130 FSV-LDVPVFW---PILLCYWIFLFVLTMKRQI-LHMIKYKYVPF 169 (190)
Q Consensus 130 f~~-fDiPVfW---PiLl~Yfi~Lf~ltm~rqI-~HMiKy~YvPf 169 (190)
... +++|.+- -+|++ +-.++...+|| .||+.++|-.|
T Consensus 385 ~~~~~g~~~~~gGTslLI~---Vgv~l~~~~qi~s~l~~~~Y~g~ 426 (429)
T 3dl8_G 385 ISVWFNIPFYFGGTTALIV---VGVALDTFRQIETYLIQKKYKSY 426 (429)
T ss_dssp HTTSSCCSCCCSTHHHHHH---HHHHHHHHHHHHHHCCCCCTTCS
T ss_pred HHHHhCCCccccchhhhhh---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 443 5677442 12221 22233344454 67888888776
No 8
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=13.72 E-value=76 Score=24.12 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=10.6
Q ss_pred HHHHHHHhhhCc
Q 029649 155 KRQILHMIKYKY 166 (190)
Q Consensus 155 ~rqI~HMiKy~Y 166 (190)
++|.|||-||..
T Consensus 12 ~~qLqkkfkHa~ 23 (107)
T 1v74_A 12 RKQLDKKYKHAG 23 (107)
T ss_dssp HHHHHHHGGGGG
T ss_pred HHHHHhHhcccc
Confidence 799999999765
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=12.61 E-value=1.5e+02 Score=18.14 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029649 140 PILLCYWIFLFVLTMKRQI 158 (190)
Q Consensus 140 PiLl~Yfi~Lf~ltm~rqI 158 (190)
-||++|=+++..+-.|..+
T Consensus 10 giL~iYgii~T~Ly~R~K~ 28 (33)
T 2hac_A 10 GILFIYGVILTALFLRVKF 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3899999999999888653
No 10
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=11.04 E-value=32 Score=30.09 Aligned_cols=6 Identities=83% Similarity=1.990 Sum_probs=3.5
Q ss_pred ccchhH
Q 029649 135 VPVFWP 140 (190)
Q Consensus 135 iPVfWP 140 (190)
|||||+
T Consensus 226 VPVFWa 231 (276)
T 2pif_A 226 VPVFWA 231 (276)
T ss_dssp EEEEEE
T ss_pred cceEec
Confidence 566663
Done!