Query 029649
Match_columns 190
No_of_seqs 107 out of 238
Neff 4.1
Searched_HMMs 13730
Date Tue Mar 26 03:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029649.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029649hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmea1 f.24.1.1 (A:14-562) Ba 22.5 27 0.002 30.3 3.4 58 64-121 467-524 (549)
2 d1zeea1 a.266.1.2 (A:6-392) Hy 19.7 97 0.007 26.1 6.2 83 98-185 132-235 (387)
3 d1dlca3 f.1.3.1 (A:61-289) del 14.0 1.6E+02 0.012 21.9 5.8 45 121-165 8-60 (229)
4 d1veha_ d.52.8.1 (A:) HIRA-int 12.6 38 0.0028 22.8 1.4 19 150-169 61-79 (92)
5 d1u84a_ a.230.1.1 (A:) hypothe 10.4 64 0.0046 21.7 2.0 23 153-176 3-25 (81)
6 d1k8ia2 d.19.1.1 (A:11-92) Cla 9.3 38 0.0028 22.9 0.4 14 103-116 38-51 (82)
7 d1eysh2 f.23.10.1 (H:7-43) Pho 8.8 1.2E+02 0.0084 17.6 2.5 23 35-58 11-33 (37)
8 d1hdma2 d.19.1.1 (A:13-93) Cla 8.4 36 0.0026 23.0 -0.0 14 103-116 39-52 (81)
9 d1b77a1 d.131.1.2 (A:1-110) gp 8.3 21 0.0016 25.1 -1.3 22 65-86 52-74 (110)
10 d1k8ba_ d.241.1.1 (A:) Transla 7.1 66 0.0048 19.4 0.8 14 151-164 18-31 (52)
No 1
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=22.48 E-value=27 Score=30.34 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhcCCCCCchhhhccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHH
Q 029649 64 GLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAF 121 (190)
Q Consensus 64 ~LgIylLnlfi~FLtP~~Dp~l~~~dg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~ 121 (190)
+..+++.|++-...+.+..|+..++.-+...+..+.|=.+=.+.||+.|+|.-.+-+.
T Consensus 467 g~l~f~~nl~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~w~~~~~~l 524 (549)
T d1xmea1 467 ALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAIL 524 (549)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHSSCCCCCCBCCCSSHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCCCCCCCCcccCCccHHHHHHHHHH
Confidence 4457788888888888777764221111111222222223445799999997654443
No 2
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=19.74 E-value=97 Score=26.14 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCCCCCcccCCchhHHHHHHHHHHHHHHHH--HhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhC----------
Q 029649 98 SDEFKPFVRRLPEFKFWYALTKAFVVAFFL--TFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYK---------- 165 (190)
Q Consensus 98 ~~EFrPFiRRLPEFkFW~~~tra~~ia~~~--Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy~---------- 165 (190)
++-+|.|..=.-|.-|=-+-||.+.-..-+ ...++.++|+==|+-.=-.. ..|..++-|++..
T Consensus 132 ~~~~k~ft~l~de~~f~~~nt~~~~a~~~a~~~l~~~~~lgi~hp~~~~ll~-----~~~~aLq~v~~sn~~l~~~ld~~ 206 (387)
T d1zeea1 132 NGIYKRFTDLPDEKLFVDYNTKGILAYKRASDALLKIQPLGISHPISHDLLR-----VTKQALQDVIESNQQLFNRLDTD 206 (387)
T ss_dssp TTEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSHHHHHHHH-----HHHHHHHHHHHHHHHHHTTSCHH
T ss_pred hhhHhhccCCchHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHH-----HHHHHHHHHHHHHHHHHHhcCHH
Confidence 788999998888999999999887655443 37889999888886443333 3377777777642
Q ss_pred ---------cccCCCCccccCCCCCCCCC
Q 029649 166 ---------YVPFNIGKPRYGKKSSENSS 185 (190)
Q Consensus 166 ---------YvPf~~gK~~y~~~~~~~~~ 185 (190)
|-|+..|++.|.|.+++.++
T Consensus 207 ~Ff~~vRPyykP~rVG~q~YrG~sAgqsa 235 (387)
T d1zeea1 207 RFFYCVRPYYKPYRVGSVVYRGANAGDFA 235 (387)
T ss_dssp HHHHHTGGGGCCEEETTEEECCCCTTCSH
T ss_pred HHHHHhhhhcchhhcCCeeeCCCChhhcc
Confidence 78999999999887655544
No 3
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=14.00 E-value=1.6e+02 Score=21.88 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=27.0
Q ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHH--------HHHHHHHHHHhhhC
Q 029649 121 FVVAFFLTFFSVLDVPVFWPILLCYWIFLFV--------LTMKRQILHMIKYK 165 (190)
Q Consensus 121 ~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~--------ltm~rqI~HMiKy~ 165 (190)
+.++++.+..+++-+|+-=+++-++-.++=. =.|.+|++.||..+
T Consensus 8 ~~~~i~~~il~~~~~P~~g~~~~~~~~i~~~lwP~~~~w~~~~~~ve~lId~~ 60 (229)
T d1dlca3 8 KGISVVGDLLGVVGFPFGGALVSFYTNFLNTIWPSEDPWKAFMEQVEALMDQK 60 (229)
T ss_dssp HHHHHHHHHTTSCBSCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 5566666666766677765444332222212 25788999998765
No 4
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.62 E-value=38 Score=22.84 Aligned_cols=19 Identities=32% Similarity=0.742 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhCcccC
Q 029649 150 FVLTMKRQILHMIKYKYVPF 169 (190)
Q Consensus 150 f~ltm~rqI~HMiKy~YvPf 169 (190)
-..|+|..|++|+|+ ++|-
T Consensus 61 s~~Tlk~~Ie~~L~~-~vpe 79 (92)
T d1veha_ 61 SIITLKSGIQNMLQF-YIPE 79 (92)
T ss_dssp HHHHTHHHHHHHHHH-HCSS
T ss_pred HHHHHHHHHHHHHHH-HCCC
Confidence 457999999999998 5574
No 5
>d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.40 E-value=64 Score=21.71 Aligned_cols=23 Identities=35% Similarity=0.735 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhCcccCCCCcccc
Q 029649 153 TMKRQILHMIKYKYVPFNIGKPRY 176 (190)
Q Consensus 153 tm~rqI~HMiKy~YvPf~~gK~~y 176 (190)
-|.++.-|+|| ++-||-.|...|
T Consensus 3 ~~n~~m~~~i~-~WDPF~~G~d~Y 25 (81)
T d1u84a_ 3 QLNRLLLEWIG-AWDPFGLGKDAY 25 (81)
T ss_dssp HHHHHHHHHHH-HHCTTSSCGGGG
T ss_pred HHHHHHHHHHH-ccCCcccCccch
Confidence 37888889988 689999999988
No 6
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=9.32 E-value=38 Score=22.95 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=11.5
Q ss_pred CcccCCchhHHHHH
Q 029649 103 PFVRRLPEFKFWYA 116 (190)
Q Consensus 103 PFiRRLPEFkFW~~ 116 (190)
--+.|||||.=|-.
T Consensus 38 ~rvPrLPefa~Wa~ 51 (82)
T d1k8ia2 38 TRVPRLPDFAEWAQ 51 (82)
T ss_dssp EEEESSTTTTHHHH
T ss_pred ccccCCCccccccc
Confidence 34779999999975
No 7
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=8.75 E-value=1.2e+02 Score=17.56 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccE
Q 029649 35 MERWLGTLAVAAIYVLRVFYVQGF 58 (190)
Q Consensus 35 ~~RW~~~~~l~~lf~~Rv~~~~g~ 58 (190)
..=|+++++|++ |+-|=-...||
T Consensus 11 y~Fw~FFagLi~-YL~rE~~REGy 33 (37)
T d1eysh2 11 WAFWLFFFGLII-YLRREDKREGY 33 (37)
T ss_dssp HHHHHHHHHHHH-HHHHHTTSSSC
T ss_pred HHHHHHHHHHHH-HHHhcccccCC
Confidence 345776665544 66665555554
No 8
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=8.41 E-value=36 Score=23.02 Aligned_cols=14 Identities=50% Similarity=0.790 Sum_probs=11.0
Q ss_pred CcccCCchhHHHHH
Q 029649 103 PFVRRLPEFKFWYA 116 (190)
Q Consensus 103 PFiRRLPEFkFW~~ 116 (190)
--+.|||||+=|-.
T Consensus 39 ~rvPrLPefa~Wa~ 52 (81)
T d1hdma2 39 TRVPRLPEFADWAQ 52 (81)
T ss_dssp EEEESSGGGGGGTT
T ss_pred ccccCCCccccchh
Confidence 34779999999953
No 9
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=8.26 E-value=21 Score=25.09 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhcCCC-CCchhh
Q 029649 65 LGIYILNLLIGFLSPS-VDPELE 86 (190)
Q Consensus 65 LgIylLnlfi~FLtP~-~Dp~l~ 86 (190)
.|||=||.||+-|+=. -||+++
T Consensus 52 faIYDL~eFL~~lsL~~~~p~l~ 74 (110)
T d1b77a1 52 VALYDLNSFLSILSLVSDDAEIS 74 (110)
T ss_dssp EEESCHHHHHHHHTTSCTTCEEE
T ss_pred eeeeeHHHHHhHHhhccCCCccc
Confidence 4789999999999865 478775
No 10
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.12 E-value=66 Score=19.43 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhh
Q 029649 151 VLTMKRQILHMIKY 164 (190)
Q Consensus 151 ~ltm~rqI~HMiKy 164 (190)
|-.|+|.-+|+.||
T Consensus 18 ~~~L~R~p~hv~kf 31 (52)
T d1k8ba_ 18 AKAVNRDEEFFAKY 31 (52)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHhCCCHHHHHHH
Done!