BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029650
         (190 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 4
          Length = 94

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 66/77 (85%)

Query: 63  LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDET 122
           LR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ QRFCQQCSRFH+L EFDE 
Sbjct: 8   LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEA 67

Query: 123 KRSCRRRLAGHNERRRK 139
           KRSCRRRLAGHNERRRK
Sbjct: 68  KRSCRRRLAGHNERRRK 84


>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 12 Lacking The Second
           Zinc- Binding Site
          Length = 60

 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 45/55 (81%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFD 120
           CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSRFH L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
           Promoter Binding Protein-like 7
          Length = 88

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 55/81 (67%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
           CQV  C AD+S+ K YH+RH+VC   A A  V++ G  +R+CQQC +FH L +FDE KRS
Sbjct: 6   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 65

Query: 126 CRRRLAGHNERRRKNAAESNG 146
           CRR+L  HN RR++   +  G
Sbjct: 66  CRRKLERHNNRRKRKPVDKGG 86


>pdb|2CDB|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp And Glucose
 pdb|2CDB|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp And Glucose
 pdb|2CDB|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp And Glucose
 pdb|2CDB|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp And Glucose
 pdb|2CDC|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp And Xylose
 pdb|2CDC|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp And Xylose
 pdb|2CDC|C Chain C, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp And Xylose
 pdb|2CDC|D Chain D, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp And Xylose
          Length = 366

 Score = 26.6 bits (57), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 151 CKGTGTGTQLKDLVCGKLDDKGRIKISIQENATC 184
            K    G Q+KD+   KLD  G+IKI    N  C
Sbjct: 6   VKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGIC 39


>pdb|2CD9|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
 pdb|2CD9|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 - Apo Form
 pdb|2CDA|A Chain A, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp
 pdb|2CDA|B Chain B, Sulfolobus Solfataricus Glucose Dehydrogenase 1 In Complex
           With Nadp
          Length = 366

 Score = 26.6 bits (57), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 151 CKGTGTGTQLKDLVCGKLDDKGRIKISIQENATC 184
            K    G Q+KD+   KLD  G+IKI    N  C
Sbjct: 6   VKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGIC 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,454,131
Number of Sequences: 62578
Number of extensions: 153846
Number of successful extensions: 243
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 6
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)