Query 029650
Match_columns 190
No_of_seqs 144 out of 282
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 03:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 1.8E-46 6.3E-51 284.6 0.3 92 56-147 1-92 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 4.6E-45 1.6E-49 274.1 -1.1 84 61-144 1-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.4E-34 4.7E-39 204.2 2.7 59 62-120 2-60 (60)
4 2d8r_A THAP domain-containing 31.2 15 0.0005 26.3 0.8 13 63-75 9-21 (99)
5 1vk6_A NADH pyrophosphatase; 1 28.3 18 0.00063 30.1 1.1 37 78-115 100-136 (269)
6 1gh9_A 8.3 kDa protein (gene M 24.2 31 0.001 24.3 1.5 27 87-116 6-32 (71)
7 2dt7_A Splicing factor 3A subu 18.5 24 0.00081 22.2 -0.1 9 77-85 21-29 (38)
8 2yrt_A Chord containing protei 16.7 44 0.0015 24.0 0.9 42 57-102 2-44 (75)
9 3ga8_A HTH-type transcriptiona 16.3 42 0.0014 22.8 0.8 20 93-112 25-44 (78)
10 3o9x_A Uncharacterized HTH-typ 15.2 42 0.0014 23.9 0.5 22 92-113 24-45 (133)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.8e-46 Score=284.64 Aligned_cols=92 Identities=74% Similarity=1.256 Sum_probs=80.6
Q ss_pred cCCCCCCCcccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccccccchHHHHHhhHHH
Q 029650 56 GSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNE 135 (190)
Q Consensus 56 ~~~~~~g~~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLarHn~ 135 (190)
|++|+++.++||||||++||+.+|.||+||+|||.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+
T Consensus 1 ~~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~ 80 (94)
T 1ul4_A 1 GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNE 80 (94)
T ss_dssp -------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCC
T ss_pred CCCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccCC
Q 029650 136 RRRKNAAESNGE 147 (190)
Q Consensus 136 RRRk~~~~~~~~ 147 (190)
||||+++++...
T Consensus 81 RRRk~~~~~~~~ 92 (94)
T 1ul4_A 81 RRRKSSGESGPS 92 (94)
T ss_dssp CCCSCCCC----
T ss_pred HhccCCCCcCCC
Confidence 999999997654
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=4.6e-45 Score=274.13 Aligned_cols=84 Identities=48% Similarity=0.961 Sum_probs=80.2
Q ss_pred CCCcccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccccccchHHHHHhhHHHHhccc
Q 029650 61 SGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKN 140 (190)
Q Consensus 61 ~g~~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLarHn~RRRk~ 140 (190)
+|.++||||||++||+.+|.||+||+|||.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+|||++
T Consensus 1 G~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~ 80 (88)
T 1ul5_A 1 GSVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRK 80 (88)
T ss_dssp --CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCC
T ss_pred CCCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 029650 141 AAES 144 (190)
Q Consensus 141 ~~~~ 144 (190)
++++
T Consensus 81 ~~~~ 84 (88)
T 1ul5_A 81 PVDK 84 (88)
T ss_dssp SCSS
T ss_pred CccC
Confidence 8875
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.4e-34 Score=204.18 Aligned_cols=59 Identities=71% Similarity=1.265 Sum_probs=57.3
Q ss_pred CCcccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccc
Q 029650 62 GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFD 120 (190)
Q Consensus 62 g~~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFD 120 (190)
+.++|||+||++||+.+|.||+||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 57899999999999999999999999999999999999999999999999999999998
No 4
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=31.15 E-value=15 Score=26.31 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=9.8
Q ss_pred CcccccCCCCccc
Q 029650 63 LRSCQVDKCGADL 75 (190)
Q Consensus 63 ~~~CQVeGC~adL 75 (190)
+..|-|.||...-
T Consensus 9 ~~~C~v~gC~n~~ 21 (99)
T 2d8r_A 9 PTNCAAAGCATTY 21 (99)
T ss_dssp CCCCCSSSCCCSC
T ss_pred CCeeEeCCCCCCC
Confidence 3469999999754
No 5
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=28.33 E-value=18 Score=30.07 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=28.8
Q ss_pred chhhhhhccchhhhhcccEEEECCeeeehhhhhccccc
Q 029650 78 AKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHE 115 (190)
Q Consensus 78 ~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~ 115 (190)
+..++++++-|+.+- ++.+..++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEec
Confidence 446888999999865 4555678888999999997654
No 6
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=24.19 E-value=31 Score=24.35 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=21.0
Q ss_pred chhhhhcccEEEECCeeeehhhhhcccccc
Q 029650 87 VCEVHAKAQVVLMGGIRQRFCQQCSRFHEL 116 (190)
Q Consensus 87 VCe~H~KAp~V~v~G~~qRFCQQCsRFH~L 116 (190)
.|+ ..+..++-+|....-|+ ||+-|.+
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeee
Confidence 476 55667788899999998 9976654
No 7
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.49 E-value=24 Score=22.22 Aligned_cols=9 Identities=44% Similarity=1.091 Sum_probs=4.3
Q ss_pred cchhhhhhc
Q 029650 77 DAKQYHRRH 85 (190)
Q Consensus 77 ~~K~YhrRh 85 (190)
.+|+||+||
T Consensus 21 ~Ike~Hrr~ 29 (38)
T 2dt7_A 21 QIKEFHRKH 29 (38)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhC
Confidence 344555544
No 8
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.66 E-value=44 Score=23.99 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=29.8
Q ss_pred CCCCCCC-cccccCCCCcccccchhhhhhccchhhhhcccEEEECCe
Q 029650 57 SSGGSGL-RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGI 102 (190)
Q Consensus 57 ~~~~~g~-~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~ 102 (190)
+.|+.|. ..|+--||+........ -.-.|-.|...|+ .-+|.
T Consensus 2 ~~~~~~m~~~C~n~GC~~~f~~~~n---~~~~C~yHpG~Pv-FHdg~ 44 (75)
T 2yrt_A 2 SSGSSGMALLCYNRGCGQRFDPETN---SDDACTYHPGVPV-FHDAL 44 (75)
T ss_dssp CCCCCSCCEECCSTTTCCEECTTTC---CTTTBCCCSSCEE-EETTE
T ss_pred CCccCcCccccCCCCCCCEecCCCC---CCCCeECCCCCcc-cCCCC
Confidence 3455555 59999999998875322 3467999999985 45665
No 9
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=16.32 E-value=42 Score=22.82 Aligned_cols=20 Identities=20% Similarity=0.715 Sum_probs=16.4
Q ss_pred cccEEEECCeeeehhhhhcc
Q 029650 93 KAQVVLMGGIRQRFCQQCSR 112 (190)
Q Consensus 93 KAp~V~v~G~~qRFCQQCsR 112 (190)
+-..++|..++--+|++|+-
T Consensus 25 ~G~~~~I~~Vp~~~C~~CGE 44 (78)
T 3ga8_A 25 RGRKTVLKGIHGLYCVHCEE 44 (78)
T ss_dssp TTEEEEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCceeEECCCCCC
Confidence 55567788889999999994
No 10
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=15.15 E-value=42 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.573 Sum_probs=17.4
Q ss_pred hcccEEEECCeeeehhhhhccc
Q 029650 92 AKAQVVLMGGIRQRFCQQCSRF 113 (190)
Q Consensus 92 ~KAp~V~v~G~~qRFCQQCsRF 113 (190)
.+-..++|.+++-.+|.+|+.-
T Consensus 24 ~kg~~~~v~~v~~~~C~~CGE~ 45 (133)
T 3o9x_A 24 FRGRKTVLKGIHGLYCVHCEES 45 (133)
T ss_dssp ETTEEEEEEEEEEEEESSSSCE
T ss_pred ECCEEEEECCCceeECCCCCCE
Confidence 3456677888899999999954
Done!