Query 029652
Match_columns 190
No_of_seqs 176 out of 1024
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 03:08:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z2i_A PTH, peptidyl-tRNA hydr 100.0 1.1E-73 3.9E-78 474.2 17.1 168 16-184 2-171 (191)
2 3nea_A PTH, peptidyl-tRNA hydr 100.0 2.8E-73 9.6E-78 476.6 17.9 169 15-184 20-190 (207)
3 2pth_A Peptidyl-tRNA hydrolase 100.0 2.4E-73 8.3E-78 472.9 17.2 166 18-184 2-170 (193)
4 1ryb_A CRS2; alpha-beta, hydro 100.0 1E-72 3.4E-77 472.7 18.4 171 14-184 13-184 (205)
5 4fyj_A PTH, peptidyl-tRNA hydr 100.0 3.5E-72 1.2E-76 467.7 17.4 167 17-184 9-178 (199)
6 4hoy_A PTH, peptidyl-tRNA hydr 100.0 1.1E-71 3.7E-76 463.0 17.9 167 16-184 2-170 (193)
7 3v2i_A PTH, peptidyl-tRNA hydr 100.0 2E-71 6.8E-76 469.6 17.1 167 17-184 22-200 (222)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 1.8E-73 6.3E-78 473.9 0.0 167 17-184 3-172 (194)
9 2jva_A Peptidyl-tRNA hydrolase 58.2 4.2 0.00014 30.2 1.7 41 104-152 2-44 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 51.4 3.5 0.00012 32.0 0.2 41 104-152 2-44 (140)
11 1cfz_A Hydrogenase 2 maturatio 47.0 21 0.00072 27.4 4.2 133 18-186 2-149 (162)
12 3pu6_A Uncharacterized protein 43.0 29 0.00098 26.7 4.4 136 17-188 3-147 (157)
13 2e85_A Hydrogenase 3 maturatio 37.4 35 0.0012 26.2 4.1 130 18-186 5-146 (159)
14 3utn_X Thiosulfate sulfurtrans 36.2 32 0.0011 29.6 4.0 36 78-113 90-125 (327)
15 2l32_A Small archaeal modifier 29.0 41 0.0014 22.7 2.8 31 86-116 20-50 (74)
16 4gof_A Small glutamine-rich te 28.7 50 0.0017 21.3 3.0 23 166-188 20-43 (52)
17 3fzq_A Putative hydrolase; YP_ 26.1 37 0.0013 26.4 2.5 25 85-109 201-225 (274)
18 3ddh_A Putative haloacid dehal 26.0 48 0.0016 24.3 3.0 29 85-113 159-189 (234)
19 3r4c_A Hydrolase, haloacid deh 25.8 41 0.0014 26.2 2.7 24 86-109 196-219 (268)
20 1c8b_A Spore protease; novel f 24.7 55 0.0019 29.2 3.5 92 16-123 112-214 (371)
21 3mpo_A Predicted hydrolase of 24.6 39 0.0013 26.5 2.4 25 85-109 198-222 (279)
22 3dao_A Putative phosphatse; st 23.9 46 0.0016 26.6 2.7 25 85-109 212-236 (283)
23 3dnp_A Stress response protein 23.7 47 0.0016 26.2 2.7 25 85-109 203-227 (290)
24 2pq0_A Hypothetical conserved 23.2 41 0.0014 26.2 2.3 24 86-109 185-208 (258)
25 3pgv_A Haloacid dehalogenase-l 23.0 49 0.0017 26.4 2.7 25 85-109 210-234 (285)
26 4dw8_A Haloacid dehalogenase-l 23.0 45 0.0016 26.1 2.5 24 86-109 199-222 (279)
27 3l7y_A Putative uncharacterize 22.8 49 0.0017 26.7 2.7 24 86-109 230-253 (304)
No 1
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=1.1e-73 Score=474.20 Aligned_cols=168 Identities=43% Similarity=0.803 Sum_probs=156.7
Q ss_pred CCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhccCchhHHHHHH
Q 029652 16 ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 94 (190)
Q Consensus 16 ~~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~ 94 (190)
..|+|||||||||++|++||||||||++|+||+++++++.+ .++.+.++++.+.+++++|+||+||||+||++|+++++
T Consensus 2 ~~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~ 81 (191)
T 2z2i_A 2 AEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAK 81 (191)
T ss_dssp CSCEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHH
T ss_pred CccEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHH
Confidence 45899999999999999999999999999999999998865 46889999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCcceEEEcccCCCCCCCccccccCCCCHHHHh
Q 029652 95 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174 (190)
Q Consensus 95 ~~~i~~~~ilVihDdldl~~G~vrlk~gGs~~GHNGLkSI~~~l~gt~df~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~ 174 (190)
||+++++++||||||||||+|++|+|.+||+|||||||||+++| ||+||+|||||||||+.+.++++|||++|+++|++
T Consensus 82 ~yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 160 (191)
T 2z2i_A 82 FYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERA 160 (191)
T ss_dssp HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHT
T ss_pred HhCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999 68999999999999965567999999999999999
Q ss_pred h-HHHHHHHHH
Q 029652 175 R-DISFDCIIV 184 (190)
Q Consensus 175 ~-~~~~~~~~~ 184 (190)
. +.+++.+.+
T Consensus 161 ~l~~~i~~a~~ 171 (191)
T 2z2i_A 161 EVPTICEQAAD 171 (191)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8 666555544
No 2
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=2.8e-73 Score=476.61 Aligned_cols=169 Identities=34% Similarity=0.613 Sum_probs=158.8
Q ss_pred CCCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCchhccCchhHHHHH
Q 029652 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 93 (190)
Q Consensus 15 ~~~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~ 93 (190)
+..|+|||||||||++|++|||||||+++|+||+++++++.+. ++.+.++++.+.+++++|+||+||||+||++|++++
T Consensus 20 m~~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~ 99 (207)
T 3nea_A 20 MPKIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVA 99 (207)
T ss_dssp -CCCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHH
T ss_pred cCCcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHH
Confidence 4568999999999999999999999999999999999998765 688999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCcceEEEcccCCCCCCCccccccCCCCHHHH
Q 029652 94 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173 (190)
Q Consensus 94 ~~~~i~~~~ilVihDdldl~~G~vrlk~gGs~~GHNGLkSI~~~l~gt~df~RlrIGIGrP~~~~~v~~yVL~~f~~~E~ 173 (190)
+||+++++++||||||||||+|++|+|++||+|||||||||+++| +|+||+|||||||||+.+.++++|||++|+++|+
T Consensus 100 ~~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~ 178 (207)
T 3nea_A 100 NFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQK 178 (207)
T ss_dssp HHHTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHH
T ss_pred HHhCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHH
Confidence 999999999999999999999999999999999999999999999 6899999999999998878899999999999999
Q ss_pred hh-HHHHHHHHH
Q 029652 174 ER-DISFDCIIV 184 (190)
Q Consensus 174 ~~-~~~~~~~~~ 184 (190)
+. +++++.+++
T Consensus 179 ~~l~~~i~~a~~ 190 (207)
T 3nea_A 179 KDIDSAIDNGIC 190 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 98 776666554
No 3
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=2.4e-73 Score=472.93 Aligned_cols=166 Identities=37% Similarity=0.629 Sum_probs=155.4
Q ss_pred CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhccCchhHHHHHHhc
Q 029652 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 96 (190)
Q Consensus 18 ~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~~ 96 (190)
|+|||||||||++|++||||||||++|+||+++++++. +.++.+.++++.+.+++++|+||+||||+||++|+++++||
T Consensus 2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y 81 (193)
T 2pth_A 2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81 (193)
T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence 68999999999999999999999999999999999986 56788999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchhhHHHhhcC-CCCcceEEEcccCCCCCCCccccccCCCCHHHHhh
Q 029652 97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRG-NREFARLRIGIGRPPGQMDPKAFLLQKFNAIARER 175 (190)
Q Consensus 97 ~i~~~~ilVihDdldl~~G~vrlk~gGs~~GHNGLkSI~~~l~g-t~df~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~ 175 (190)
+++++++||||||||||+|++|+|.+||+|||||||||+++| + |+||+|||||||||.++.++++|||++|+++|++.
T Consensus 82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-g~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 160 (193)
T 2pth_A 82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL 160 (193)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH
T ss_pred CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999 6 89999999999999654579999999999999998
Q ss_pred -HHHHHHHHH
Q 029652 176 -DISFDCIIV 184 (190)
Q Consensus 176 -~~~~~~~~~ 184 (190)
+.+++.+.+
T Consensus 161 l~~~i~~a~~ 170 (193)
T 2pth_A 161 IDEAIDEAAR 170 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 766555544
No 4
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=1e-72 Score=472.75 Aligned_cols=171 Identities=57% Similarity=1.051 Sum_probs=158.3
Q ss_pred CCCCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhccCchhHHHHH
Q 029652 14 AVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 93 (190)
Q Consensus 14 ~~~~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~ 93 (190)
.+..++|||||||||++|++||||||||++|+||+++++++++.++.+.++++.+.+++|+|+||+||||+||++|++++
T Consensus 13 ~~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~ 92 (205)
T 1ryb_A 13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA 92 (205)
T ss_dssp --CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred CCCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence 35678999999999999999999999999999999999998877889999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCcceEEEcccCCCCCCCccccccCCCCHHHH
Q 029652 94 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 173 (190)
Q Consensus 94 ~~~~i~~~~ilVihDdldl~~G~vrlk~gGs~~GHNGLkSI~~~l~gt~df~RlrIGIGrP~~~~~v~~yVL~~f~~~E~ 173 (190)
+||+++++++||||||||||+|++|+|.+||+|||||||||+++|.||+||+|||||||||+.+.++++|||++|+++|+
T Consensus 93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~ 172 (205)
T 1ryb_A 93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172 (205)
T ss_dssp HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence 99999999999999999999999999999999999999999999933899999999999997656799999999999999
Q ss_pred hh-HHHHHHHHH
Q 029652 174 ER-DISFDCIIV 184 (190)
Q Consensus 174 ~~-~~~~~~~~~ 184 (190)
+. +.+++.+.+
T Consensus 173 ~~l~~~i~~a~~ 184 (205)
T 1ryb_A 173 VQIDTALEQGVD 184 (205)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 98 665555544
No 5
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=3.5e-72 Score=467.72 Aligned_cols=167 Identities=38% Similarity=0.658 Sum_probs=156.4
Q ss_pred CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhccCchhHHHHHHh
Q 029652 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (190)
Q Consensus 17 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~ 95 (190)
..-|||||||||++|++||||||||++|+||++++.++.+ .++.+.++++.+.+++++|+||+||||+||++|+++++|
T Consensus 9 ~~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~ 88 (199)
T 4fyj_A 9 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF 88 (199)
T ss_dssp CCCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred eeeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHH
Confidence 3469999999999999999999999999999999998764 468899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchhhHHHhhcCCC-CcceEEEcccCCCCCCCccccccCCCCHHHHh
Q 029652 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNR-EFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174 (190)
Q Consensus 96 ~~i~~~~ilVihDdldl~~G~vrlk~gGs~~GHNGLkSI~~~l~gt~-df~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~ 174 (190)
|+++++++||||||||||+|++|+|++||+|||||||||+++| ||+ ||+|||||||||+.+.++++|||++|+++|++
T Consensus 89 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 167 (199)
T 4fyj_A 89 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 167 (199)
T ss_dssp TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHH
T ss_pred hCCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHH
Confidence 9999999999999999999999999999999999999999999 587 99999999999988789999999999999999
Q ss_pred h-HHHHHHHHH
Q 029652 175 R-DISFDCIIV 184 (190)
Q Consensus 175 ~-~~~~~~~~~ 184 (190)
. +.+++.+.+
T Consensus 168 ~l~~~i~~a~~ 178 (199)
T 4fyj_A 168 LLDTSIDFALG 178 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8 776666554
No 6
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=1.1e-71 Score=463.02 Aligned_cols=167 Identities=37% Similarity=0.682 Sum_probs=156.5
Q ss_pred CCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhccCchhHHHHHH
Q 029652 16 ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 94 (190)
Q Consensus 16 ~~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~ 94 (190)
+.++|||||||||++|++|||||||+++|+||+++++++.. .++.+.++++.+.+++++|+||+||||+||+||+++++
T Consensus 2 s~ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~ 81 (193)
T 4hoy_A 2 SNISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSK 81 (193)
T ss_dssp CCCCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHH
T ss_pred CCceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHH
Confidence 45789999999999999999999999999999999999754 57788999999999999999999999999999999999
Q ss_pred hcCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCcceEEEcccCCCCCCCccccccCCCCHHHHh
Q 029652 95 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174 (190)
Q Consensus 95 ~~~i~~~~ilVihDdldl~~G~vrlk~gGs~~GHNGLkSI~~~l~gt~df~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~ 174 (190)
||+++++++||||||||||+|++|+|++||+|||||||||+++| || ||+|||||||||+++.++++|||++|+++|++
T Consensus 82 ~~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 159 (193)
T 4hoy_A 82 FYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQS 159 (193)
T ss_dssp HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHH
T ss_pred HcCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999 56 79999999999998889999999999999999
Q ss_pred h-HHHHHHHHH
Q 029652 175 R-DISFDCIIV 184 (190)
Q Consensus 175 ~-~~~~~~~~~ 184 (190)
. +++++.+.+
T Consensus 160 ~l~~~i~~a~~ 170 (193)
T 4hoy_A 160 LMDGAIDHALS 170 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8 776665554
No 7
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=2e-71 Score=469.58 Aligned_cols=167 Identities=37% Similarity=0.659 Sum_probs=153.6
Q ss_pred CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCchhccCchhHHHHHHh
Q 029652 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (190)
Q Consensus 17 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~ 95 (190)
.++|||||||||++|++|||||||+++|+||+++++++.+. +|.+.++++.+.+++++|+||+||||+||++|+++++|
T Consensus 22 ~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~ 101 (222)
T 3v2i_A 22 MIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHF 101 (222)
T ss_dssp CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred eEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHH
Confidence 46899999999999999999999999999999999997654 68899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCcceEEEcccCC----------CCCCCcccccc
Q 029652 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAFLL 165 (190)
Q Consensus 96 ~~i~~~~ilVihDdldl~~G~vrlk~gGs~~GHNGLkSI~~~l~gt~df~RlrIGIGrP----------~~~~~v~~yVL 165 (190)
|+++++++||||||||||+|++|+|.+||+|||||||||+++| +|+||+||||||||| +.+.++++|||
T Consensus 102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yVL 180 (222)
T 3v2i_A 102 FKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVL 180 (222)
T ss_dssp HTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHTT
T ss_pred hCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHhc
Confidence 9999999999999999999999999999999999999999999 689999999999999 55668999999
Q ss_pred CCCCHHHHhh-HHHHHHHHH
Q 029652 166 QKFNAIARER-DISFDCIIV 184 (190)
Q Consensus 166 ~~f~~~E~~~-~~~~~~~~~ 184 (190)
++|+++|++. +++++.+.+
T Consensus 181 ~~fs~~E~~~l~~~i~~a~~ 200 (222)
T 3v2i_A 181 KPPRKEEQDVIDAAIERALA 200 (222)
T ss_dssp SCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 9999999988 666555554
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.8e-73 Score=473.92 Aligned_cols=167 Identities=38% Similarity=0.654 Sum_probs=154.6
Q ss_pred CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhccCchhHHHHHHh
Q 029652 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (190)
Q Consensus 17 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~ 95 (190)
.|+|||||||||++|++||||||||++|+||+++++++. +.++.+.++++.+.+++|+|+||+||||+||++|+++++|
T Consensus 3 mm~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f 82 (194)
T 4fno_A 3 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF 82 (194)
Confidence 368999999999999999999999999999999999876 4568889999888889999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchhhHHHhhcCC-CCcceEEEcccCCCCCCCccccccCCCCHHHHh
Q 029652 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 174 (190)
Q Consensus 96 ~~i~~~~ilVihDdldl~~G~vrlk~gGs~~GHNGLkSI~~~l~gt-~df~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~ 174 (190)
|+|+++++||||||||||+|++|+|.+||+|||||||||+++| || +||+|||||||||.++.++++|||++|+++|++
T Consensus 83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 161 (194)
T 4fno_A 83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 161 (194)
Confidence 9999999999999999999999999999999999999999999 58 899999999999965557999999999999999
Q ss_pred h-HHHHHHHHH
Q 029652 175 R-DISFDCIIV 184 (190)
Q Consensus 175 ~-~~~~~~~~~ 184 (190)
. +.+++.+.+
T Consensus 162 ~l~~~i~~a~~ 172 (194)
T 4fno_A 162 LLDTSIDFALG 172 (194)
Confidence 8 766555544
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=58.18 E-value=4.2 Score=30.16 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=30.0
Q ss_pred EEEeccCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCcceEEEccc
Q 029652 104 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 152 (190)
Q Consensus 104 lVihDdldl~~G~vrlk--~gGs~~GHNGLkSI~~~l~gt~df~RlrIGIG 152 (190)
+.|.+++++|...++++ +++|+||+|= ..++-=.||+.=+.
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQnV--------NKv~SaV~L~~d~~ 44 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQNV--------NKVSSAMHLRFDIN 44 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSSS--------CCCCCCEEEEEETT
T ss_pred cccccccccChHHEEEEEEECCCCCCCCc--------CCCcceEEEEEEcc
Confidence 55778899999988887 6888999872 23444577887664
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=51.38 E-value=3.5 Score=31.96 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=29.3
Q ss_pred EEEeccCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCcceEEEccc
Q 029652 104 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 152 (190)
Q Consensus 104 lVihDdldl~~G~vrlk--~gGs~~GHNGLkSI~~~l~gt~df~RlrIGIG 152 (190)
+.|.+++++|...+++. +.+|+||+|= ..++.=.+|++=|.
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQnV--------NKv~SaV~L~~~~~ 44 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQHV--------NKTSTAIHLRFDIR 44 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHHH--------HTTCCCEEEEECCS
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCcc--------ccccceEEEEEecc
Confidence 56789999999988876 5788999763 22344567777554
No 11
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=47.05 E-value=21 Score=27.44 Aligned_cols=133 Identities=18% Similarity=0.226 Sum_probs=74.8
Q ss_pred CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhccCchhHHHHHHhcC
Q 029652 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK 97 (190)
Q Consensus 18 ~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~~~ 97 (190)
+.+|+|+|||=- .-==+|..++++|++++..+. .+-++--.| .|.-+-..++
T Consensus 2 ~ilVlGiGN~l~----gDDG~G~~v~~~L~~~~~~p~-----------------~v~vid~gt----~~~~l~~~l~--- 53 (162)
T 1cfz_A 2 RILVLGVGNILL----TDEAIGVRIVEALEQRYILPD-----------------YVEILDGGT----AGMELLGDMA--- 53 (162)
T ss_dssp CEEEEEESCTTB----GGGGHHHHHHHHHHHHEECCT-----------------TEEEEEEET----CCGGGHHHHS---
T ss_pred CEEEEEECCccc----ccccHHHHHHHHHHhhCCCCC-----------------CeEEEECCC----CHHHHHHHHh---
Confidence 468999999932 233699999999998754321 111111111 1221111121
Q ss_pred CCCCcEEEEec---cCCCCCceEEEecC--------CCCCCCC-chhhHHHhhcCCCCcc-eE-EEcccCCCCCCCcccc
Q 029652 98 LPLNRVLVFHD---DMGLPCGVLRLRHN--------GGHGGHN-GLKSVMNNFRGNREFA-RL-RIGIGRPPGQMDPKAF 163 (190)
Q Consensus 98 i~~~~ilVihD---dldl~~G~vrlk~g--------Gs~~GHN-GLkSI~~~l~gt~df~-Rl-rIGIGrP~~~~~v~~y 163 (190)
-.+.+||-| +.+.++|+++.-.. .+...|+ |+..+.+.+.-..+++ ++ =||| .|. ++ ++
T Consensus 54 --~~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi-~p~---~~-~~ 126 (162)
T 1cfz_A 54 --NRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV-IPE---SL-EP 126 (162)
T ss_dssp --SCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE-CCS---CC-CS
T ss_pred --CCCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE-EEe---Ec-CC
Confidence 236777778 56889999986321 1233454 7777776652122454 33 4577 343 23 34
Q ss_pred ccCCCCHHHHhh-HHHHHHHHHHh
Q 029652 164 LLQKFNAIARER-DISFDCIIVFY 186 (190)
Q Consensus 164 VL~~f~~~E~~~-~~~~~~~~~~~ 186 (190)
-...|++=++. +.+++.+..+.
T Consensus 127 -g~~LS~~v~~av~~a~~~i~~~l 149 (162)
T 1cfz_A 127 -HIGLTPTVEAMIEPALEQVLAAL 149 (162)
T ss_dssp -BSSCCHHHHTTHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34667766666 77777776654
No 12
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=42.99 E-value=29 Score=26.69 Aligned_cols=136 Identities=14% Similarity=0.059 Sum_probs=70.6
Q ss_pred CCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhccCchhHHHHHHhc
Q 029652 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 96 (190)
Q Consensus 17 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~~ 96 (190)
.+.||+|+|||=- .-==+|..++++|++.+. .+-++--.| .|..+-..++..
T Consensus 3 m~ilVlGiGN~L~----gDDG~G~~v~~~L~~~~p--------------------~v~vid~Gt----~~~~l~~~l~~~ 54 (157)
T 3pu6_A 3 LKKVLLCVGNELR----GDDGVAIALGRLVEEQMP--------------------EWSVFFGYD----TPESEFGKLREL 54 (157)
T ss_dssp CCEEEEEECCTTB----GGGGHHHHHHHHHHHHCT--------------------TEEEEEEET----CGGGGHHHHHHH
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHHhhCC--------------------CeEEEECCC----CHHHHHHHHHhc
Confidence 4579999999942 334589999999984321 011111111 222222223321
Q ss_pred CCCCCcEEEEecc-CCCCCceEEEecCC------CCCCCCchhhHHHhhcCCCCcceEE-EcccCCCCCCCccccccCCC
Q 029652 97 KLPLNRVLVFHDD-MGLPCGVLRLRHNG------GHGGHNGLKSVMNNFRGNREFARLR-IGIGRPPGQMDPKAFLLQKF 168 (190)
Q Consensus 97 ~i~~~~ilVihDd-ldl~~G~vrlk~gG------s~~GHNGLkSI~~~l~gt~df~Rlr-IGIGrP~~~~~v~~yVL~~f 168 (190)
+ + +.+||-|= .+.++|+++.-..- -+...-|+..+.+.+.. ...++. |||= |.. .+..+|- ...
T Consensus 55 ~--~-d~lIiVDA~~g~~PGti~~~~~~~~~~~~~s~H~~~l~~~L~~l~~--~~p~v~liGie-p~~-~~~~~~g-~~L 126 (157)
T 3pu6_A 55 A--P-DVIVVADAMSGFKEGEIEFLDLSDERTYLYSTHNLPTPILISYLRG--ICSKTIFLGIS-VLL-ENVLHFS-EGL 126 (157)
T ss_dssp C--C-SEEEEEEEEEC----CEEEEETTSHHHHHC-----CCHHHHHHHHH--HCSEEEEEEEE-ECG-GGGSSCB-CSC
T ss_pred C--C-CEEEEEEecCCCCCcEEEEEchhHhcCCCCCCCCCCHHHHHHHHHc--cCCCEEEEEEE-Eee-cCCCCCC-CCC
Confidence 1 2 44555454 46789999865432 24455688888888742 234554 4663 321 1223443 357
Q ss_pred CHHHHhh-HHHHHHHHHHhcc
Q 029652 169 NAIARER-DISFDCIIVFYGL 188 (190)
Q Consensus 169 ~~~E~~~-~~~~~~~~~~~~~ 188 (190)
|++=++. +.+++.+..|...
T Consensus 127 S~~V~~av~~a~~~i~~~~~~ 147 (157)
T 3pu6_A 127 SQGASDSAFVALGRIKELDGM 147 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhh
Confidence 7776666 8888999888753
No 13
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=37.39 E-value=35 Score=26.15 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=70.6
Q ss_pred CeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCC-chhccCchhHHHHHHhc
Q 029652 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ-TYMNLSGESTGPLAAYY 96 (190)
Q Consensus 18 ~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~-TyMNlSG~aV~~~~~~~ 96 (190)
+.+|+|+|||=- .-==+|..++++|++++. ..+-++--. .=||+- ..++.+
T Consensus 5 ~~lVlGiGN~l~----gDDG~G~~v~~~L~~~~~-------------------~~v~vid~gt~~~~l~-----~~l~~~ 56 (159)
T 2e85_A 5 TDVLLCVGNSMM----GDDGAGPLLAEKCAAAPK-------------------GNWVVIDGGSAPENDI-----VAIREL 56 (159)
T ss_dssp CEEEEEECCGGG----GGGGHHHHHHHHHHHSCC-------------------TTCEEEECTTCSGGGH-----HHHHHH
T ss_pred CEEEEEECCccc----ccccHHHHHHHHHhhhCC-------------------CCeEEEECCCCHHHHH-----HHHhcC
Confidence 469999999932 233699999999987421 012222211 122321 222222
Q ss_pred CCCCCcEEEEec--cCCCCCceEEEec------C-CCCCCCCchhhHHHhhcCCCCcceE-EEcccCCCCCCCccccccC
Q 029652 97 KLPLNRVLVFHD--DMGLPCGVLRLRH------N-GGHGGHNGLKSVMNNFRGNREFARL-RIGIGRPPGQMDPKAFLLQ 166 (190)
Q Consensus 97 ~i~~~~ilVihD--dldl~~G~vrlk~------g-Gs~~GHNGLkSI~~~l~gt~df~Rl-rIGIGrP~~~~~v~~yVL~ 166 (190)
. .+.+||-| +.+.++|+++.-. . .-+..+-|+..+.+.+. .+..++ =||| .|. ++ +| =.
T Consensus 57 --~-~d~lIiVDA~~~g~~PGti~~~~~~~l~~~~~~s~H~~~l~~~L~~l~--~~~p~v~liGi-~p~---~~-~~-g~ 125 (159)
T 2e85_A 57 --R-PTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK--EDIGEVIFLGI-QPD---IV-GF-YY 125 (159)
T ss_dssp --C-CSEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHH--HHHSEEEEEEE-CCS---CC-CT-TC
T ss_pred --C-CCEEEEEEeCCCCCCCCEEEEechhHcccccCCCCCcCCHHHHHHHHh--CCCCcEEEEEE-EEe---Ec-CC-CC
Confidence 1 25566667 4678899998532 1 22334458999998884 234454 3577 343 22 33 12
Q ss_pred CCCHHHHhh-HHHHHHHHHHh
Q 029652 167 KFNAIARER-DISFDCIIVFY 186 (190)
Q Consensus 167 ~f~~~E~~~-~~~~~~~~~~~ 186 (190)
..|++=++. +.+++.+..|.
T Consensus 126 ~LS~~v~~av~~a~~~l~~~~ 146 (159)
T 2e85_A 126 PMTQPIKDAVETVYQRLEGWE 146 (159)
T ss_dssp CCCHHHHHHHHHHHTTSTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 456555545 66665555543
No 14
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=36.16 E-value=32 Score=29.55 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=29.1
Q ss_pred CCchhccCchhHHHHHHhcCCCCCcEEEEeccCCCC
Q 029652 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLP 113 (190)
Q Consensus 78 P~TyMNlSG~aV~~~~~~~~i~~~~ilVihDdldl~ 113 (190)
|...|=-|-+...+.+..++|..++.||||||-+..
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 344566677788888999999999999999997654
No 15
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=29.00 E-value=41 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=27.0
Q ss_pred chhHHHHHHhcCCCCCcEEEEeccCCCCCce
Q 029652 86 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 116 (190)
Q Consensus 86 G~aV~~~~~~~~i~~~~ilVihDdldl~~G~ 116 (190)
|..|+.+++.++++++.++|+.+.--+|...
T Consensus 20 g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 20 DGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp TCSHHHHHHTTCCCSSCCCEECCCCCCCTTS
T ss_pred CCcHHHHHHHcCCCcceEEEEECCEECCHHH
Confidence 5689999999999999999998887777765
No 16
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=28.66 E-value=50 Score=21.28 Aligned_cols=23 Identities=17% Similarity=0.537 Sum_probs=20.3
Q ss_pred CCCCHHHHhh-HHHHHHHHHHhcc
Q 029652 166 QKFNAIARER-DISFDCIIVFYGL 188 (190)
Q Consensus 166 ~~f~~~E~~~-~~~~~~~~~~~~~ 188 (190)
+.++++++|- +.+++|+.+.|++
T Consensus 20 ~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 20 GGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCHhHHHHHHHHHHHHHHHcCC
Confidence 4689999999 9999999999875
No 17
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=26.05 E-value=37 Score=26.41 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.9
Q ss_pred CchhHHHHHHhcCCCCCcEEEEecc
Q 029652 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (190)
Q Consensus 85 SG~aV~~~~~~~~i~~~~ilVihDd 109 (190)
-|.++..+++.++++++++++|=|.
T Consensus 201 K~~~l~~l~~~lgi~~~~~i~~GD~ 225 (274)
T 3fzq_A 201 KGKAIKRLQERLGVTQKETICFGDG 225 (274)
T ss_dssp HHHHHHHHHHHHTCCSTTEEEECCS
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCC
Confidence 3667889999999999999999984
No 18
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=26.01 E-value=48 Score=24.29 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=25.4
Q ss_pred CchhHHHHHHhcCCCCCcEEEEeccC--CCC
Q 029652 85 SGESTGPLAAYYKLPLNRVLVFHDDM--GLP 113 (190)
Q Consensus 85 SG~aV~~~~~~~~i~~~~ilVihDdl--dl~ 113 (190)
.+.++..+++.++++++++++|=|.+ |+.
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~ 189 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMVGNSFKSDIQ 189 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCCCCCCH
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCcHHHhH
Confidence 67888899999999999999999986 554
No 19
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=25.76 E-value=41 Score=26.25 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=22.0
Q ss_pred chhHHHHHHhcCCCCCcEEEEecc
Q 029652 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (190)
Q Consensus 86 G~aV~~~~~~~~i~~~~ilVihDd 109 (190)
|.++..+++.++++++++++|=|.
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~ 219 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDG 219 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCc
Confidence 588899999999999999999995
No 20
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=24.74 E-value=55 Score=29.15 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=56.4
Q ss_pred CCCeEEEEecCCCCCcCcCcchHHHHHHHHHHHHcCCCCCccccceEEEEEEE--CCeeEEEEeC----CchhccCchhH
Q 029652 16 ARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFV--GDAPVLLAKP----QTYMNLSGEST 89 (190)
Q Consensus 16 ~~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~~~~~~~~~~~--~~~~v~L~kP----~TyMNlSG~aV 89 (190)
....|||||||.. -|--..|-.+++.|. ++ +.-+. ++.-.+ .-..|.-+-| +|=||.+ +.+
T Consensus 112 ~~~iLVVGLGN~~----vTpDALGP~Vv~~l~----vT--rHl~~--~g~~~~~~~~~pVsAiaPGVmg~TGiEt~-EiI 178 (371)
T 1c8b_A 112 DASCLVVGLGNLS----VTPDALGPKAVDNLL----IT--RHLFE--LQPESVQDGFRPVSAIVPGVMGMTGIETS-DII 178 (371)
T ss_dssp TCCEEEEECSCSS----SGGGCHHHHHHTTCC----CC--HHHHH--HSCCSSCSSCCCEEEECSGGGCCCSSCHH-HHH
T ss_pred CCcEEEEEcCCCC----cCccccCcceeeeee----EE--eehhh--hCchhhccCCCceEEecCCccccccccHH-HHH
Confidence 4568999999974 699999999998663 11 11010 111011 1235666666 4556643 456
Q ss_pred HHHHHhcCCCCCcEEEEeccCCC----CCc-eEEEecCC
Q 029652 90 GPLAAYYKLPLNRVLVFHDDMGL----PCG-VLRLRHNG 123 (190)
Q Consensus 90 ~~~~~~~~i~~~~ilVihDdldl----~~G-~vrlk~gG 123 (190)
+.+.+.++ .+++|.-|-|-. -+| +|++-..|
T Consensus 179 ~gIv~k~k---Pd~VIAIDALAars~~Rl~~TIQIsdTG 214 (371)
T 1c8b_A 179 FGVVKKVN---PDFIIAIDALAARSIERVNATIQISDSG 214 (371)
T ss_dssp HHHHHHHC---CSEEEEEEEECCSSGGGSSSEEEEETTC
T ss_pred HHHHHhcC---CCEEEEEchhhcCcHhhcCCeEEECCCC
Confidence 66777665 477888888554 356 78887665
No 21
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=24.58 E-value=39 Score=26.53 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.6
Q ss_pred CchhHHHHHHhcCCCCCcEEEEecc
Q 029652 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (190)
Q Consensus 85 SG~aV~~~~~~~~i~~~~ilVihDd 109 (190)
-|.++..+++.++++++++++|=|.
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQ 222 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--C
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4788899999999999999999984
No 22
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=23.92 E-value=46 Score=26.59 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.0
Q ss_pred CchhHHHHHHhcCCCCCcEEEEecc
Q 029652 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (190)
Q Consensus 85 SG~aV~~~~~~~~i~~~~ilVihDd 109 (190)
-|.++..+++.++++++++++|=|.
T Consensus 212 K~~~l~~l~~~lgi~~~e~ia~GD~ 236 (283)
T 3dao_A 212 KWTALSYLIDRFDLLPDEVCCFGDN 236 (283)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCC
Confidence 3568899999999999999999994
No 23
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=23.66 E-value=47 Score=26.23 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.2
Q ss_pred CchhHHHHHHhcCCCCCcEEEEecc
Q 029652 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (190)
Q Consensus 85 SG~aV~~~~~~~~i~~~~ilVihDd 109 (190)
-|.++..+++.++++++++++|=|.
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~ 227 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQ 227 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCc
Confidence 3678889999999999999999994
No 24
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=23.24 E-value=41 Score=26.19 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.3
Q ss_pred chhHHHHHHhcCCCCCcEEEEecc
Q 029652 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (190)
Q Consensus 86 G~aV~~~~~~~~i~~~~ilVihDd 109 (190)
|.++..+++.+++++++++++=|.
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs 208 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG 208 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc
Confidence 666889999999999999999984
No 25
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=23.00 E-value=49 Score=26.38 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.4
Q ss_pred CchhHHHHHHhcCCCCCcEEEEecc
Q 029652 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (190)
Q Consensus 85 SG~aV~~~~~~~~i~~~~ilVihDd 109 (190)
-|.++..+++.++++++++++|=|.
T Consensus 210 K~~al~~l~~~lgi~~~~~ia~GD~ 234 (285)
T 3pgv_A 210 KGHALEAVAKMLGYTLSDCIAFGDG 234 (285)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred hHHHHHHHHHHhCCCHHHEEEECCc
Confidence 3678899999999999999999995
No 26
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=22.97 E-value=45 Score=26.15 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.2
Q ss_pred chhHHHHHHhcCCCCCcEEEEecc
Q 029652 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (190)
Q Consensus 86 G~aV~~~~~~~~i~~~~ilVihDd 109 (190)
|.++..+++.++++++++++|=|.
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDG 222 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCC
Confidence 788899999999999999999994
No 27
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=22.80 E-value=49 Score=26.70 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.5
Q ss_pred chhHHHHHHhcCCCCCcEEEEecc
Q 029652 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (190)
Q Consensus 86 G~aV~~~~~~~~i~~~~ilVihDd 109 (190)
|.++..+++.++++++++++|=|.
T Consensus 230 ~~al~~l~~~lgi~~~e~i~~GDs 253 (304)
T 3l7y_A 230 GWALQQLLKRWNFTSDHLMAFGDG 253 (304)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHhCcCHHHEEEECCC
Confidence 558899999999999999999994
Done!