BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029654
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2
Length = 195
Score = 264 bits (674), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/193 (65%), Positives = 153/193 (79%), Gaps = 4/193 (2%)
Query: 1 MEGLGSDG---AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
MEG G D A V K + R +QYYLDK+TP++ RW+GTL IY LRV+ + G
Sbjct: 1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60
Query: 58 FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYAL 117
FYI++YGLGIY+LNLLIGFLSP VDPELE + A+LPT+GSDEFKPF+RRLPEFKFWY++
Sbjct: 61 FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120
Query: 118 TKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY- 176
TKAF +AF +TFFSV DVPVFWPILLCYW+ LFVLTM+RQI HMIK+KY+PF+IGK +Y
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180
Query: 177 GKKSSENSSRIPR 189
G+KSS NS R
Sbjct: 181 GRKSSANSGGGSR 193
>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1
Length = 191
Score = 256 bits (654), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 123/188 (65%), Positives = 148/188 (78%), Gaps = 4/188 (2%)
Query: 1 MEGLGSDG---AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQG 57
M+ G D A V + + R +Q+YLDK+TP+ RW+GTL VA IY LRV+Y+QG
Sbjct: 1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60
Query: 58 FYIVTYGLGIYILNLLIGFLSPSVDPELEALNTA-SLPTKGSDEFKPFVRRLPEFKFWYA 116
FYI+ YGLGIY+LNLLIGFLSP VDPE ++ SLPT+GSDEFKPF+RRLPEFKFWY+
Sbjct: 61 FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120
Query: 117 LTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRY 176
+TKAF +AF +TFFSV DVPVFWPILLCYWI LFVLTM+RQI HMIKYKY+PF+ GK +Y
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180
Query: 177 GKKSSENS 184
G +SS S
Sbjct: 181 GGRSSSGS 188
>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2
Length = 221
Score = 239 bits (609), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/166 (66%), Positives = 134/166 (80%)
Query: 9 AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIY 68
A+ + KW+ +FS+ FQ YLD+S PN + RWL TL A IY+ RV+ V G+++++YGL Y
Sbjct: 16 ASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATY 75
Query: 69 ILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLT 128
ILNLLIGFLSP VDPELEAL+ SLP SDE+KPFVRRLPEFKFWYA TKAFVVAF +T
Sbjct: 76 ILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMT 135
Query: 129 FFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKP 174
FFS LDVPVFWPILLCYW+ L+ LTMKR I+HM KY+Y PF++ KP
Sbjct: 136 FFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKP 181
>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1
Length = 212
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 134/177 (75%)
Query: 9 AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIY 68
A +V + FS++ Q+ LDK+ P+ + RW+ L V IY++RV++V+GFYI+TY +GIY
Sbjct: 34 ADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIY 93
Query: 69 ILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLT 128
+LNL+I FLSP DPE + SLPT+ SDE++PFVRRLPEFKFW ++ +AF++ F +T
Sbjct: 94 LLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMT 153
Query: 129 FFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSSENSS 185
FF V DVPVFWPILL YW+ LF LTM++QI HMIKY+YVPF+ GK +YGKK + S
Sbjct: 154 FFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYGKKPAPTES 210
>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1
Length = 196
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/182 (54%), Positives = 130/182 (71%), Gaps = 3/182 (1%)
Query: 3 GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
G G SV+ ++ S + +Q +LDKSTP T RW+ TL ++ +Y++RV+ +QG+YIV
Sbjct: 8 GDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIV 67
Query: 62 TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
TY LGIY LNL I FLSP VDP L ++ + SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68 TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127
Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
+VA TFF +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF GK RY K
Sbjct: 128 GILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187
Query: 180 SS 181
Sbjct: 188 ED 189
>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1
Length = 196
Score = 197 bits (501), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/182 (54%), Positives = 130/182 (71%), Gaps = 3/182 (1%)
Query: 3 GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
G G SV+ ++ S + +Q +LDKSTP T RW+ TL ++ +Y++RV+ +QG+YIV
Sbjct: 8 GDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIV 67
Query: 62 TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
TY LGIY LNL I FLSP VDP L ++ + SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68 TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127
Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
+VA TFF +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF GK RY K
Sbjct: 128 GILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGK 187
Query: 180 SS 181
Sbjct: 188 ED 189
>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1
Length = 196
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 99/186 (53%), Positives = 131/186 (70%), Gaps = 3/186 (1%)
Query: 3 GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
G G SV+ ++ + + +Q +LDKSTP T RW+ TL ++ +Y++RV+ +QG+YIV
Sbjct: 8 GESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIV 67
Query: 62 TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
TY LGIY LNL I FLSP VDP L ++ + SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68 TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127
Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
+VA TFF +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF GK RY K
Sbjct: 128 GILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187
Query: 180 SSENSS 185
+
Sbjct: 188 EDAGKA 193
>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1
Length = 196
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 99/186 (53%), Positives = 131/186 (70%), Gaps = 3/186 (1%)
Query: 3 GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
G G SV+ ++ + + +Q +LDKSTP T RW+ TL ++ +Y++RV+ +QG+YIV
Sbjct: 8 GESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIV 67
Query: 62 TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
TY LGIY LNL I FLSP VDP L ++ + SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68 TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127
Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
+VA TFF +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF GK RY K
Sbjct: 128 GILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGK 187
Query: 180 SSENSS 185
+
Sbjct: 188 EDAGKA 193
>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2
Length = 196
Score = 196 bits (499), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 99/186 (53%), Positives = 131/186 (70%), Gaps = 3/186 (1%)
Query: 3 GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
G G SV+ ++ + + +Q +LDKSTP+T RW+ TL ++ IY++RV+ +QG+YIV
Sbjct: 8 GDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIV 67
Query: 62 TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
TY LGIY LNL I FLSP VDP L ++ + SLPTK ++EF+PF+RRLPEFKFW+A TK
Sbjct: 68 TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATK 127
Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
+VA TFF +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF GK Y K
Sbjct: 128 GILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTYKGK 187
Query: 180 SSENSS 185
+
Sbjct: 188 EDAGKA 193
>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1
Length = 196
Score = 194 bits (492), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/182 (53%), Positives = 130/182 (71%), Gaps = 3/182 (1%)
Query: 3 GLGSDGAASVM-KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIV 61
G G SV+ ++ + + +Q +LDKSTP T RW+ TL ++ IY++RV+ +QG+YIV
Sbjct: 8 GESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIV 67
Query: 62 TYGLGIYILNLLIGFLSPSVDPEL--EALNTASLPTKGSDEFKPFVRRLPEFKFWYALTK 119
TY LGIY LNL I FLSP VDP L ++ + SLPT+ ++EF+PF+RRLPEFKFW++ TK
Sbjct: 68 TYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATK 127
Query: 120 AFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKK 179
+VA TFF +VPVFWPIL+ Y+I LF +TMKRQI HMIKY+Y+PF GK +Y K
Sbjct: 128 GILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKYKGK 187
Query: 180 SS 181
Sbjct: 188 ED 189
>sp|P25560|RER1_YEAST Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RER1 PE=1 SV=2
Length = 188
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 112/161 (69%), Gaps = 2/161 (1%)
Query: 23 FQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVD 82
+Q+YLDK TP+ ERW + ++++R+ +G+Y++ YGLG+++LN + FL+P D
Sbjct: 28 YQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFD 87
Query: 83 PELEA--LNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWP 140
L+ N + S+EF+PF+RRLPEFKFWY +A V++ L+ FS+ D+PVFWP
Sbjct: 88 MSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLLLSLFSIFDIPVFWP 147
Query: 141 ILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSS 181
ILL Y+I LF LTM+RQI HMIKY+Y+P +IGK +Y S+
Sbjct: 148 ILLMYFILLFFLTMRRQIQHMIKYRYIPLDIGKKKYSHSSN 188
>sp|P52879|RER1_CAEEL Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=3 SV=1
Length = 191
Score = 169 bits (429), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 119/169 (70%), Gaps = 5/169 (2%)
Query: 22 KFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSV 81
K+QYYLD+ TP+T RW+ L + R+ +QGFYIV Y +GIY LNL + FL+PS+
Sbjct: 22 KYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSI 81
Query: 82 DPELEALNTAS---LPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVF 138
DP LE + LP+K +DEF+PF+RRLPEFKFW++ KA ++A TFF DVPVF
Sbjct: 82 DPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFFEFFDVPVF 141
Query: 139 WPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSSENSSRI 187
WPIL+ Y+ L LT+KRQI+HMIKY+Y+PF +GKPR K E++ ++
Sbjct: 142 WPILVMYFFILTFLTLKRQIMHMIKYRYIPFTVGKPRMAGK--EDTGKV 188
>sp|P79003|RER1_SACPS Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1
Length = 188
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 112/161 (69%), Gaps = 2/161 (1%)
Query: 23 FQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVD 82
+Q+YLDK TP+ +RW + ++++R+ +G+Y++ YGLG+++LN + FL+P D
Sbjct: 28 YQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICYGLGLFLLNQFLAFLTPKFD 87
Query: 83 PELEA--LNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWP 140
L+ N + S+EF+PF+RRLPEFKFWY +A V++ L+ FS+ D+PVFWP
Sbjct: 88 MSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRATVISLVLSLFSIFDIPVFWP 147
Query: 141 ILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKSS 181
ILL Y++ LF LTM+RQI HM+KY+Y+P +IGK +Y S+
Sbjct: 148 ILLMYFVLLFFLTMRRQIQHMMKYRYIPLDIGKKKYSHPSN 188
>sp|Q10358|RER1_SCHPO Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rer1 PE=3 SV=1
Length = 184
Score = 166 bits (420), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 116/172 (67%), Gaps = 7/172 (4%)
Query: 13 MKWKSDFS-RKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILN 71
+K K +F+ R +++++D++ P T RWL + A++ +R+ V+G+YIV Y L IY+LN
Sbjct: 11 VKEKKNFAVRLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLN 70
Query: 72 LLIGFLSPSVDPELEA------LNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAF 125
L + FL+P DP +E + LPT DEF+PF+RRLPEFKFWY+ +A + A
Sbjct: 71 LFLAFLTPKFDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFAL 130
Query: 126 FLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYG 177
+FF + DVPVFWPIL+ Y++ L +RQI HM+KY+YVPF+IGK ++G
Sbjct: 131 VASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKKKFG 182
>sp|Q54D10|RER1_DICDI Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1
Length = 188
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 118/181 (65%), Gaps = 4/181 (2%)
Query: 5 GSDGAASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRV-FYVQGFYIVTY 63
G + + + + +RK+Q ++K+ +RW ++ +Y+LRV G+Y++TY
Sbjct: 8 GLPAPHNFVSFTTLIARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITY 67
Query: 64 GLGIYILNLLIGFLSPSVDPELEALNTASLPT---KGSDEFKPFVRRLPEFKFWYALTKA 120
LGI++L I FLSP DPELE + SLPT + DE KPF+RRLPEF FW+++ KA
Sbjct: 68 ALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKA 127
Query: 121 FVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVPFNIGKPRYGKKS 180
++ F TF LD+PVFWPILL Y+I +F +TMK+QI HMIKYKY+PF +GK Y K +
Sbjct: 128 LFISIFCTFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGKKTYTKNN 187
Query: 181 S 181
S
Sbjct: 188 S 188
>sp|P16492|GH_SHV21 Glycoprotein H OS=Saimiriine herpesvirus 2 (strain 11) GN=gH PE=3
SV=1
Length = 717
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 23 FQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVT----YGLGIYILNLLIGFLS 78
+ Y +D+ N +LG + + VL F+ Y+ T Y Y+LN LIG +
Sbjct: 118 WSYTIDQWEDNKTTGYLGNFGIPSKTVLNEFFYDFQYVYTNRQFYTEATYVLNCLIGATT 177
Query: 79 PS 80
P+
Sbjct: 178 PA 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.143 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,934,601
Number of Sequences: 539616
Number of extensions: 2747152
Number of successful extensions: 7203
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7173
Number of HSP's gapped (non-prelim): 24
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)