Query 029654
Match_columns 190
No_of_seqs 108 out of 238
Neff 4.1
Searched_HMMs 13730
Date Tue Mar 26 18:13:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029654.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2276-2280//hhsearch_scop/029654hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zeea1 a.266.1.2 (A:6-392) Hy 26.9 16 0.0012 14.3 6.2 83 98-185 132-235 (387)
2 d1xmea1 f.24.1.1 (A:14-562) Ba 18.9 24 0.0017 13.3 3.4 57 64-120 467-523 (549)
3 d1k8ia2 d.19.1.1 (A:11-92) Cla 14.7 20 0.0015 13.7 0.4 17 102-118 37-53 (82)
4 d1hdma2 d.19.1.1 (A:13-93) Cla 13.2 19 0.0014 13.9 -0.0 15 102-116 38-52 (81)
5 d1b77a1 d.131.1.2 (A:1-110) gp 12.1 12 0.00088 15.0 -1.3 23 64-86 51-74 (110)
6 d1veha_ d.52.8.1 (A:) HIRA-int 5.3 74 0.0054 10.5 1.6 20 149-169 60-79 (92)
7 d1eysh2 f.23.10.1 (H:7-43) Pho 4.3 86 0.0063 10.1 1.4 24 34-58 10-33 (37)
8 d1u84a_ a.230.1.1 (A:) hypothe 4.0 92 0.0067 9.9 2.0 28 14-41 44-71 (81)
9 d1k8ba_ d.241.1.1 (A:) Transla 3.8 1E+02 0.0073 9.7 0.8 14 151-164 18-31 (52)
10 d2zjri1 c.12.1.1 (I:4-144) Rib 3.4 88 0.0064 10.0 -0.5 11 103-113 52-62 (141)
No 1
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=26.95 E-value=16 Score=14.27 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q ss_conf 9877986447853689999799999999987--311455551459999999999999999999998640-----------
Q 029654 98 SDEFKPFVRRLPEFKFWYALTKAFVVAFFLT--FFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKY----------- 164 (190)
Q Consensus 98 ~~EFrPFiRRLPEFkFW~~~tra~~ia~~~T--ff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy----------- 164 (190)
++-+|.|..-.-|..|--+-|+++.-..-+. .-++.++++=-|+-.=-...+ +.-++-|++.
T Consensus 132 ~~~~k~ft~l~de~~f~~~nt~~~~a~~~a~~~l~~~~~lgi~hp~~~~ll~~~-----~~aLq~v~~sn~~l~~~ld~~ 206 (387)
T d1zeea1 132 NGIYKRFTDLPDEKLFVDYNTKGILAYKRASDALLKIQPLGISHPISHDLLRVT-----KQALQDVIESNQQLFNRLDTD 206 (387)
T ss_dssp TTEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSHHHHHHHHHH-----HHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCHH
T ss_conf 106763058835789998757999999999999876428789975489999999-----999999999999999843999
Q ss_pred --------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------733688886544799989888
Q 029654 165 --------KYVPFNIGKPRYGKKSSENSS 185 (190)
Q Consensus 165 --------rYvPf~~gK~~y~~~~~~~~~ 185 (190)
=|-|+..|++.|.|.+++.++
T Consensus 207 ~Ff~~vRPyykP~rVG~q~YrG~sAgqsa 235 (387)
T d1zeea1 207 RFFYCVRPYYKPYRVGSVVYRGANAGDFA 235 (387)
T ss_dssp HHHHHTGGGGCCEEETTEEECCCCTTCSH
T ss_pred HHHHHHHHHCCHHHCCCEEECCCCHHHCC
T ss_conf 98998563125432377510799712010
No 2
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=18.92 E-value=24 Score=13.32 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 789999998885239998900110048999999998779864478536899997999
Q 029654 64 GLGIYILNLLIGFLSPSVDPELEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKA 120 (190)
Q Consensus 64 ~LgIylLnlfi~FLtP~~Dp~l~~edg~~Lp~~~~~EFrPFiRRLPEFkFW~~~tra 120 (190)
+.-+++.|++....+.+..|+..++.-+......+.|=.+=.+.||+.|+|.-..-+
T Consensus 467 g~l~f~~nl~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~w~~~~~~ 523 (549)
T d1xmea1 467 ALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAI 523 (549)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHSSCCCCCCBCCCSSHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999999994777999999998712257798899975558750799999999
No 3
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=14.66 E-value=20 Score=13.74 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=12.8
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 98644785368999979
Q 029654 102 KPFVRRLPEFKFWYALT 118 (190)
Q Consensus 102 rPFiRRLPEFkFW~~~t 118 (190)
+--+.|||||.=|-.-.
T Consensus 37 ~~rvPrLPefa~Wa~~~ 53 (82)
T d1k8ia2 37 NTRVPRLPDFAEWAQGQ 53 (82)
T ss_dssp TEEEESSTTTTHHHHCC
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 73356788631120216
No 4
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=13.16 E-value=19 Score=13.85 Aligned_cols=15 Identities=47% Similarity=0.755 Sum_probs=11.5
Q ss_pred CCCCCCCCHHHHHHH
Q ss_conf 986447853689999
Q 029654 102 KPFVRRLPEFKFWYA 116 (190)
Q Consensus 102 rPFiRRLPEFkFW~~ 116 (190)
+--+.|||||.=|-.
T Consensus 38 ~~rvPrLPefa~Wa~ 52 (81)
T d1hdma2 38 NTRVPRLPEFADWAQ 52 (81)
T ss_dssp TEEEESSGGGGGGTT
T ss_pred CCCCCCCCCCCCCHH
T ss_conf 733567886410301
No 5
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=12.12 E-value=12 Score=15.04 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHCCCC-CCCHHH
Q ss_conf 78999999888523999-890011
Q 029654 64 GLGIYILNLLIGFLSPS-VDPELE 86 (190)
Q Consensus 64 ~LgIylLnlfi~FLtP~-~Dp~l~ 86 (190)
-.|||=||.||+-|+-. -||+++
T Consensus 51 efaIYDL~eFL~~lsL~~~~p~l~ 74 (110)
T d1b77a1 51 DVALYDLNSFLSILSLVSDDAEIS 74 (110)
T ss_dssp CEEESCHHHHHHHHTTSCTTCEEE
T ss_pred CEEEEEHHHHHHHHHHCCCCCCCC
T ss_conf 132254999986886126797612
No 6
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.26 E-value=74 Score=10.48 Aligned_cols=20 Identities=30% Similarity=0.670 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999864073368
Q 029654 149 LFVLTMKRQILHMIKYKYVPF 169 (190)
Q Consensus 149 Lf~ltm~rqI~HMiKyrYvPf 169 (190)
....|++..|++|+|. ++|-
T Consensus 60 ~s~~Tlk~~Ie~~L~~-~vpe 79 (92)
T d1veha_ 60 SSIITLKSGIQNMLQF-YIPE 79 (92)
T ss_dssp HHHHHTHHHHHHHHHH-HCSS
T ss_pred HHHHHHHHHHHHHHHH-HCCC
T ss_conf 1899999999999998-7898
No 7
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.33 E-value=86 Score=10.09 Aligned_cols=24 Identities=21% Similarity=0.330 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 1428889999999999887422437
Q 029654 34 TMERWLGTLAVAAIYVLRVFYVQGF 58 (190)
Q Consensus 34 ~~~RW~~~~~L~~lf~~Rv~~~~g~ 58 (190)
...=|+++++|.+ |+-|--...||
T Consensus 10 ly~Fw~FFagLi~-YL~rE~~REGy 33 (37)
T d1eysh2 10 IWAFWLFFFGLII-YLRREDKREGY 33 (37)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTSSSC
T ss_pred HHHHHHHHHHHHH-HHHHCCCCCCC
T ss_conf 9999999999999-99723543579
No 8
>d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.02 E-value=92 Score=9.91 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999999898876521364414288899
Q 029654 14 KWKSDFSRKFQYYLDKSTPNTMERWLGT 41 (190)
Q Consensus 14 ~~~~~~~~~yq~~LDk~tp~~~~RW~~~ 41 (190)
..-.+++..|+.--|...|...-.=++.
T Consensus 44 ~LA~~IQ~Iye~SFEe~lp~e~C~klA~ 71 (81)
T d1u84a_ 44 TLAARIQSIYEFAFDEPIPFPHCLKLAR 71 (81)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999973501367599999999
No 9
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.77 E-value=1e+02 Score=9.71 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999998640
Q 029654 151 VLTMKRQILHMIKY 164 (190)
Q Consensus 151 ~ltm~rqI~HMiKy 164 (190)
|-.|+|.-.|+.||
T Consensus 18 ~~~L~R~p~hv~kf 31 (52)
T d1k8ba_ 18 AKAVNRDEEFFAKY 31 (52)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHCCCHHHHHHH
T ss_conf 98869798999999
No 10
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.42 E-value=88 Score=10.02 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=0.0
Q ss_pred CCCCCCCHHHH
Q ss_conf 86447853689
Q 029654 103 PFVRRLPEFKF 113 (190)
Q Consensus 103 PFiRRLPEFkF 113 (190)
|+.||+|.+-|
T Consensus 52 Pl~rrlPKrGf 62 (141)
T d2zjri1 52 RLIARLPKRGF 62 (141)
T ss_dssp SSTTTSCCCCC
T ss_pred CCEECCCCCCC
T ss_conf 53541774577
Done!