BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029655
         (190 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
 pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
          Length = 306

 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 36/81 (44%)

Query: 82  RLGLASDVGLAAGKALTGYLSGSTXXXXXXXXXXXXVVLSSIALWSYKAAKAPKDKEHPY 141
           R  +A+ + L   K L    SGS              + S I   + + A  P D +H Y
Sbjct: 16  RASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRY 75

Query: 142 GHGKFETLGALGISSMLLATA 162
           GHGK E L AL  S+ ++ +A
Sbjct: 76  GHGKAEPLAALAQSAFIMGSA 96


>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
 pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
          Length = 300

 Score = 30.0 bits (66), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 134 PKDKEHPYGHGKFETLGALGISSMLLATA 162
           P D  H +GHGK E+L AL  S  +  +A
Sbjct: 66  PADDNHSFGHGKAESLAALAQSMFISGSA 94


>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
          Length = 283

 Score = 30.0 bits (66), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 134 PKDKEHPYGHGKFETLGALG 153
           P D  H +GHGK E+L AL 
Sbjct: 59  PADDNHSFGHGKAESLAALA 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,274,338
Number of Sequences: 62578
Number of extensions: 189520
Number of successful extensions: 2058
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2054
Number of HSP's gapped (non-prelim): 10
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)