Query 029655
Match_columns 190
No_of_seqs 181 out of 1210
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 16:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03557 zinc transporter ZitB 99.9 1.8E-23 4E-28 181.6 15.5 104 74-177 14-117 (312)
2 COG1230 CzcD Co/Zn/Cd efflux s 99.9 3.2E-23 6.9E-28 178.3 15.4 115 62-178 7-121 (296)
3 COG0053 MMT1 Predicted Co/Zn/C 99.9 7.3E-23 1.6E-27 177.5 12.8 113 72-184 6-118 (304)
4 PRK09509 fieF ferrous iron eff 99.9 1.2E-21 2.5E-26 169.1 13.8 106 75-180 7-112 (299)
5 KOG1485 Mitochondrial Fe2+ tra 99.8 1.1E-19 2.4E-24 161.1 11.2 103 73-175 109-211 (412)
6 TIGR01297 CDF cation diffusion 99.8 1.5E-18 3.2E-23 146.4 9.5 87 91-177 2-88 (268)
7 KOG1484 Putative Zn2+ transpor 99.7 1.4E-16 3E-21 138.0 12.7 108 77-188 33-140 (354)
8 PF01545 Cation_efflux: Cation 99.7 4.7E-18 1E-22 144.1 1.4 98 81-178 1-98 (284)
9 KOG1483 Zn2+ transporter ZNT1 99.6 1E-15 2.2E-20 134.8 9.6 101 78-178 8-108 (404)
10 KOG1482 Zn2+ transporter [Inor 99.6 2.4E-15 5.2E-20 131.9 11.1 106 72-177 66-171 (379)
11 KOG2802 Membrane protein HUEL 99.4 1.4E-13 3E-18 120.8 4.9 108 75-182 203-311 (503)
12 COG3965 Predicted Co/Zn/Cd cat 99.3 1.2E-11 2.5E-16 104.5 9.8 104 76-179 17-121 (314)
13 COG0053 MMT1 Predicted Co/Zn/C 99.3 4.8E-11 1E-15 103.7 12.2 95 78-180 120-214 (304)
14 PRK09509 fieF ferrous iron eff 99.0 3.1E-09 6.8E-14 91.8 12.3 92 80-179 120-211 (299)
15 TIGR01297 CDF cation diffusion 99.0 3.3E-09 7.2E-14 89.4 11.7 94 79-180 98-191 (268)
16 PRK03557 zinc transporter ZitB 98.7 1.4E-07 3.1E-12 82.1 11.0 90 83-180 130-219 (312)
17 KOG1485 Mitochondrial Fe2+ tra 98.6 1.8E-07 3.9E-12 83.8 7.7 94 81-183 233-326 (412)
18 PF01545 Cation_efflux: Cation 97.6 2.5E-05 5.4E-10 66.1 1.4 90 81-177 109-201 (284)
19 COG1230 CzcD Co/Zn/Cd efflux s 97.5 0.0009 1.9E-08 58.2 9.3 94 79-181 129-222 (296)
20 KOG1484 Putative Zn2+ transpor 95.4 0.051 1.1E-06 48.1 6.7 64 112-184 212-275 (354)
21 KOG1482 Zn2+ transporter [Inor 87.5 2.4 5.3E-05 38.1 7.2 70 104-179 223-292 (379)
22 PRK10019 nickel/cobalt efflux 69.4 76 0.0016 27.5 11.4 25 150-174 254-278 (279)
23 PF02038 ATP1G1_PLM_MAT8: ATP1 65.8 15 0.00033 23.6 4.1 31 136-167 4-34 (50)
24 COG4035 Predicted membrane pro 64.7 9.4 0.0002 27.9 3.3 33 123-162 73-105 (108)
25 PF09877 DUF2104: Predicted me 57.9 73 0.0016 23.4 7.5 21 141-161 77-97 (99)
26 COG3965 Predicted Co/Zn/Cd cat 53.8 69 0.0015 27.9 7.2 80 98-177 148-227 (314)
27 COG4331 Predicted membrane pro 49.5 1.2E+02 0.0027 23.9 7.5 47 83-132 111-157 (167)
28 PF11712 Vma12: Endoplasmic re 48.3 78 0.0017 24.2 6.3 46 82-127 78-126 (142)
29 COG1009 NuoL NADH:ubiquinone o 40.4 1.9E+02 0.0042 27.9 8.8 99 68-171 149-262 (606)
30 TIGR00927 2A1904 K+-dependent 39.4 39 0.00084 34.4 4.0 35 80-114 458-492 (1096)
31 COG2215 ABC-type uncharacteriz 38.0 2.8E+02 0.0062 24.4 11.7 26 144-169 275-300 (303)
32 COG1183 PssA Phosphatidylserin 37.7 1.4E+02 0.0029 25.3 6.6 73 88-170 45-117 (234)
33 PF02535 Zip: ZIP Zinc transpo 37.3 2.5E+02 0.0054 23.6 11.5 71 106-177 203-289 (317)
34 PF02790 COX2_TM: Cytochrome C 32.9 1.5E+02 0.0033 19.8 7.1 31 134-164 50-80 (84)
35 PF10002 DUF2243: Predicted me 32.8 2.4E+02 0.0053 22.1 7.0 57 105-170 43-99 (143)
36 PRK06525 hydrogenase 4 subunit 30.9 4.1E+02 0.009 24.4 9.2 56 73-128 292-347 (479)
37 PF02674 Colicin_V: Colicin V 27.9 2.5E+02 0.0055 20.7 8.4 21 144-164 94-114 (146)
38 PF11990 DUF3487: Protein of u 27.3 2.7E+02 0.0059 21.0 7.0 54 92-149 38-92 (121)
39 PRK10747 putative protoheme IX 27.3 56 0.0012 29.1 2.8 50 126-175 17-67 (398)
40 COG0651 HyfB Formate hydrogenl 26.0 5.4E+02 0.012 24.0 9.1 100 75-174 157-264 (504)
41 MTH00140 COX2 cytochrome c oxi 25.6 3.9E+02 0.0084 22.1 7.7 29 136-164 51-79 (228)
42 KOG3195 Uncharacterized membra 25.0 3.5E+02 0.0076 22.4 6.7 27 73-99 117-143 (213)
43 COG0651 HyfB Formate hydrogenl 24.4 4.6E+02 0.0099 24.5 8.3 54 73-129 294-347 (504)
44 MTH00150 ND4 NADH dehydrogenas 23.4 5.6E+02 0.012 23.2 8.9 76 74-152 238-316 (417)
45 TIGR00540 hemY_coli hemY prote 23.1 1E+02 0.0023 27.4 3.7 49 126-174 17-66 (409)
46 COG4966 PilW Tfp pilus assembl 20.4 96 0.0021 27.5 2.8 35 134-168 6-40 (318)
47 KOG4349 Uncharacterized conser 20.1 2.8E+02 0.0061 21.4 4.9 29 107-143 51-79 (143)
No 1
>PRK03557 zinc transporter ZitB; Provisional
Probab=99.91 E-value=1.8e-23 Score=181.59 Aligned_cols=104 Identities=23% Similarity=0.360 Sum_probs=99.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHH
Q 029655 74 GKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALG 153 (190)
Q Consensus 74 ~~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali 153 (190)
++..+|.+++++++|+++++.|+++|+.+||.+|++||+|++.|++++++.++++++++||+|++|||||+|+|++++++
T Consensus 14 ~~~~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~ 93 (312)
T PRK03557 14 EDNNARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFV 93 (312)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHH
Confidence 33357889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 029655 154 ISSMLLATAGGIAWHALDLLLDLL 177 (190)
Q Consensus 154 ~sv~li~~~~~ii~eav~~Ll~~~ 177 (190)
++++|++++++++++++++++++.
T Consensus 94 ~~~~l~~~~~~i~~eai~~l~~~~ 117 (312)
T PRK03557 94 NAIALVVITILIVWEAIERFRTPR 117 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999998764
No 2
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.2e-23 Score=178.32 Aligned_cols=115 Identities=29% Similarity=0.411 Sum_probs=105.4
Q ss_pred cCCCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 029655 62 LGHSHDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPY 141 (190)
Q Consensus 62 ~~h~h~~~~~~~~~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~ 141 (190)
++|+|+|. ....+.+|.+++++++|+.++++|+++|+.+||++|+||++|+++|+++.++.++++++++|+++.+|||
T Consensus 7 ~~h~h~~~--~~~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~Tf 84 (296)
T COG1230 7 HSHGHDHA--HDNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTF 84 (296)
T ss_pred hccCCccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 44444443 3456678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 029655 142 GHGKFETLGALGISSMLLATAGGIAWHALDLLLDLLS 178 (190)
Q Consensus 142 G~~r~E~l~ali~sv~li~~~~~ii~eav~~Ll~~~~ 178 (190)
||.|+|.+++++++++|+..++++++|+++|+.+|..
T Consensus 85 Gy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~ 121 (296)
T COG1230 85 GYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPP 121 (296)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999997653
No 3
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.89 E-value=7.3e-23 Score=177.50 Aligned_cols=113 Identities=36% Similarity=0.518 Sum_probs=106.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHH
Q 029655 72 LSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGA 151 (190)
Q Consensus 72 ~~~~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~a 151 (190)
++.+..+|+.++++++|+++++.|+++|+.+||.||+||++|+++|++++++.++++++++||+|++|||||+|+|++++
T Consensus 6 ~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~s 85 (304)
T COG0053 6 ERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLAS 85 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccc
Q 029655 152 LGISSMLLATAGGIAWHALDLLLDLLSASPEVV 184 (190)
Q Consensus 152 li~sv~li~~~~~ii~eav~~Ll~~~~~~p~~~ 184 (190)
++.+++|+++|+.++++++.+++.+...++..+
T Consensus 86 l~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~ 118 (304)
T COG0053 86 LIVSILIFAAGFEILLEAIKRLISPQPVEPPLL 118 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHH
Confidence 999999999999999999999998655554443
No 4
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=99.87 E-value=1.2e-21 Score=169.12 Aligned_cols=106 Identities=24% Similarity=0.266 Sum_probs=100.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHH
Q 029655 75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGI 154 (190)
Q Consensus 75 ~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~ 154 (190)
+..+|+.++++++|+++++.|+++|+.+||.+|+||++|++.|+++.++++++.++++|++|++|||||+|+|+++++++
T Consensus 7 ~~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~ 86 (299)
T PRK09509 7 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQ 86 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC
Q 029655 155 SSMLLATAGGIAWHALDLLLDLLSAS 180 (190)
Q Consensus 155 sv~li~~~~~ii~eav~~Ll~~~~~~ 180 (190)
+++|++.+++++++++++++++...+
T Consensus 87 ~~~l~~~~~~~~~esi~~l~~~~~~~ 112 (299)
T PRK09509 87 SMFISGSALFLFLTGIQHLISPTPMN 112 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999765433
No 5
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.1e-19 Score=161.15 Aligned_cols=103 Identities=37% Similarity=0.585 Sum_probs=99.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHH
Q 029655 73 SGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGAL 152 (190)
Q Consensus 73 ~~~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~al 152 (190)
..+.++++.|+++++|++++++|.++++.+||++++||++|++.|+++.++.++++++++++++.+||+|++|+|+++.+
T Consensus 109 ~~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i 188 (412)
T KOG1485|consen 109 LKNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLI 188 (412)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 029655 153 GISSMLLATAGGIAWHALDLLLD 175 (190)
Q Consensus 153 i~sv~li~~~~~ii~eav~~Ll~ 175 (190)
+++++|...+++++++++..+.+
T Consensus 189 ~~S~iMa~agv~ii~sSl~~i~~ 211 (412)
T KOG1485|consen 189 AVSVIMAMAGVQIIWSSLRLIVG 211 (412)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhc
Confidence 99999999999999999999987
No 6
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=99.77 E-value=1.5e-18 Score=146.38 Aligned_cols=87 Identities=41% Similarity=0.579 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 91 LAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLATAGGIAWHAL 170 (190)
Q Consensus 91 l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~~~~~ii~eav 170 (190)
+++.|+++|+.+||.+|++||+|++.|++++++++++.+.++|++|++|||||+|+|+++++++++++++.++.++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 029655 171 DLLLDLL 177 (190)
Q Consensus 171 ~~Ll~~~ 177 (190)
++++++.
T Consensus 82 ~~l~~~~ 88 (268)
T TIGR01297 82 ERLINPE 88 (268)
T ss_pred HHHhCCC
Confidence 9999764
No 7
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.4e-16 Score=138.04 Aligned_cols=108 Identities=24% Similarity=0.258 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHH
Q 029655 77 AENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISS 156 (190)
Q Consensus 77 ~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv 156 (190)
.+|-.+..+++|+.++.++.+++..+||+.|++|++|++.|+.+.++.+++..++++|++.+|+|||.|+|+++++.+++
T Consensus 33 ~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~v 112 (354)
T KOG1484|consen 33 DSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGV 112 (354)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHH
Confidence 35667777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccccccc
Q 029655 157 MLLATAGGIAWHALDLLLDLLSASPEVVRPVL 188 (190)
Q Consensus 157 ~li~~~~~ii~eav~~Ll~~~~~~p~~~~~~l 188 (190)
++++.+++++.|+++||+++ ||+.++.|
T Consensus 113 flvl~a~fi~~Es~eRl~~p----pei~t~rl 140 (354)
T KOG1484|consen 113 FLVLIAFFIFSESVERLFDP----PEIHTNRL 140 (354)
T ss_pred HHHHHHHHHhHHHHHHhcCc----hhcCCcee
Confidence 99999999999999999954 77776655
No 8
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=99.69 E-value=4.7e-18 Score=144.13 Aligned_cols=98 Identities=30% Similarity=0.456 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 029655 81 FRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLA 160 (190)
Q Consensus 81 l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~ 160 (190)
+++++++++++++.|+.+|+.+||.++++|++|++.|+++.++.+++.+.+++++|++|||||+|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC
Q 029655 161 TAGGIAWHALDLLLDLLS 178 (190)
Q Consensus 161 ~~~~ii~eav~~Ll~~~~ 178 (190)
.++.++++++++++++..
T Consensus 81 ~~~~~~~~si~~~~~~~~ 98 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHE 98 (284)
T ss_dssp HHHHHHHHHTTTSSSSSS
T ss_pred hHHHHHHHHhhccccccc
Confidence 999999999999998743
No 9
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1e-15 Score=134.80 Aligned_cols=101 Identities=27% Similarity=0.344 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHH
Q 029655 78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSM 157 (190)
Q Consensus 78 ~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~ 157 (190)
+..++..+++++++++.|++.++.++|++|++|++|++.|+++.++++++++.+++.++.+|+|||-|.|.+++++++++
T Consensus 8 ~~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~if 87 (404)
T KOG1483|consen 8 SLRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIF 87 (404)
T ss_pred ccceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHH
Confidence 44566778999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q 029655 158 LLATAGGIAWHALDLLLDLLS 178 (190)
Q Consensus 158 li~~~~~ii~eav~~Ll~~~~ 178 (190)
+...++.++.|+++|++++..
T Consensus 88 l~alc~~I~~EA~~R~I~p~~ 108 (404)
T KOG1483|consen 88 LTALCVSILIEAIERIIEPHH 108 (404)
T ss_pred HHHHHHHHHHHHHHhhcCCcc
Confidence 999999999999999997754
No 10
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.4e-15 Score=131.87 Aligned_cols=106 Identities=29% Similarity=0.382 Sum_probs=100.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHH
Q 029655 72 LSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGA 151 (190)
Q Consensus 72 ~~~~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~a 151 (190)
++++..+|.++++.++++.+++.|.+.|+..||+|+++|+.|.+.|+.+..+.+++++.++++++++..|||.|+|.+++
T Consensus 66 ~~~~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlga 145 (379)
T KOG1482|consen 66 AKRRAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGA 145 (379)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHH
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029655 152 LGISSMLLATAGGIAWHALDLLLDLL 177 (190)
Q Consensus 152 li~sv~li~~~~~ii~eav~~Ll~~~ 177 (190)
++..+.++...+.++++++++++++.
T Consensus 146 l~Sv~~IW~~tgvLV~~Ai~Rl~s~~ 171 (379)
T KOG1482|consen 146 LVSVLLIWVVTGVLVYEAIQRLLSGD 171 (379)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhhcCc
Confidence 99999999999999999999999764
No 11
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.42 E-value=1.4e-13 Score=120.83 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=100.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHH
Q 029655 75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGI 154 (190)
Q Consensus 75 ~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~ 154 (190)
+...|+..+++++|++-+.+|+.+|+.+||-.|+|+++||++|.+..++..+|+..+.+.||..|||||++.-.+..|+.
T Consensus 203 k~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLIS 282 (503)
T KOG2802|consen 203 KGSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLIS 282 (503)
T ss_pred cCCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHh
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhccCCCCc
Q 029655 155 SSMLLATAGGI-AWHALDLLLDLLSASPE 182 (190)
Q Consensus 155 sv~li~~~~~i-i~eav~~Ll~~~~~~p~ 182 (190)
++-|+.+|..+ +++.++.|+++.+.++-
T Consensus 283 gvGIfc~G~GlSiyhGv~gLlhpePi~~l 311 (503)
T KOG2802|consen 283 GVGIFCMGCGLSIYHGVMGLLHPEPIESL 311 (503)
T ss_pred ccceeeecccchhhhccccccCCCCCcch
Confidence 99999988887 89999999988765543
No 12
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.2e-11 Score=104.50 Aligned_cols=104 Identities=28% Similarity=0.285 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCchHHHHHHHHHHH
Q 029655 76 DAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAK-APKDKEHPYGHGKFETLGALGI 154 (190)
Q Consensus 76 ~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~-~~~~~~~p~G~~r~E~l~ali~ 154 (190)
.+++.+.++++..++++...+++|..+||.+++-||++++.|+..+.+.+...++.. ++++.|||||+.-+|++.-.++
T Consensus 17 ~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~in 96 (314)
T COG3965 17 NEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAIN 96 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhc
Confidence 457899999999999999999999999999999999999999999999999998877 6777799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC
Q 029655 155 SSMLLATAGGIAWHALDLLLDLLSA 179 (190)
Q Consensus 155 sv~li~~~~~ii~eav~~Ll~~~~~ 179 (190)
+.+|...+++.++.++..|+|+..+
T Consensus 97 g~ll~ll~lyAlinAl~~l~dGGR~ 121 (314)
T COG3965 97 GTLLALLCLYALINALGSLLDGGRE 121 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999998754
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.28 E-value=4.8e-11 Score=103.71 Aligned_cols=95 Identities=25% Similarity=0.194 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHH
Q 029655 78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSM 157 (190)
Q Consensus 78 ~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~ 157 (190)
--+..++++++.++..++...+..+||.+|.||++|+.+|+++++.+++++.... +||.++|++++++++++
T Consensus 120 ~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I~~~ 191 (304)
T COG0053 120 LGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLISLY 191 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHHH
Confidence 3456688889999999999999999999999999999999999999999999443 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC
Q 029655 158 LLATAGGIAWHALDLLLDLLSAS 180 (190)
Q Consensus 158 li~~~~~ii~eav~~Ll~~~~~~ 180 (190)
++..++.++++++..|+|...++
T Consensus 192 Il~~~~~~~~~s~~~L~d~~~~~ 214 (304)
T COG0053 192 ILKTGFRLFKESVNELMDAALDP 214 (304)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCH
Confidence 99999999999999999855443
No 14
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=99.04 E-value=3.1e-09 Score=91.77 Aligned_cols=92 Identities=26% Similarity=0.265 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 029655 80 IFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLL 159 (190)
Q Consensus 80 ~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li 159 (190)
+..+++++|+++..++...+..++|.++.+|+.|.+.|+++++++++++.++. +|+.++|++++++++++++
T Consensus 120 ~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il 191 (299)
T PRK09509 120 VTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYIL 191 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHH
Confidence 45677888888888899999999999999999999999999999999998875 5889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q 029655 160 ATAGGIAWHALDLLLDLLSA 179 (190)
Q Consensus 160 ~~~~~ii~eav~~Ll~~~~~ 179 (190)
..++.++++++..|++...+
T Consensus 192 ~~~~~i~~~~~~~Ll~~~~~ 211 (299)
T PRK09509 192 YSALRMGYEAVQSLLDRALP 211 (299)
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 99999999999999986433
No 15
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=99.03 E-value=3.3e-09 Score=89.38 Aligned_cols=94 Identities=28% Similarity=0.215 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHH
Q 029655 79 NIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSML 158 (190)
Q Consensus 79 r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~l 158 (190)
.+..+++++|++++.++...+...+|.++.+|+.|.+.|+++++.++++..++. ||+.++|+++++++++++
T Consensus 98 ~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i 169 (268)
T TIGR01297 98 IVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLI 169 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHH
Confidence 456678888999999999999999999999999999999999999999998886 678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCC
Q 029655 159 LATAGGIAWHALDLLLDLLSAS 180 (190)
Q Consensus 159 i~~~~~ii~eav~~Ll~~~~~~ 180 (190)
+..++.++++++..|++..+++
T Consensus 170 ~~~~~~l~~~~~~~Ll~~~~~~ 191 (268)
T TIGR01297 170 LYTAFRLLKESINVLLDAAPDE 191 (268)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999876543
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=98.70 E-value=1.4e-07 Score=82.11 Aligned_cols=90 Identities=18% Similarity=0.080 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 029655 83 LGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLATA 162 (190)
Q Consensus 83 isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~~~ 162 (190)
.++++|++.+.... .+...+|.++.+|++|.+.|+++++.++++..+... +|+.++|++++++++++++..+
T Consensus 130 ~~~~~~~~~~~~~~-~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~ 201 (312)
T PRK03557 130 AGLLANILSFWLLH-HGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSA 201 (312)
T ss_pred HHHHHHHHHHHHHh-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHH
Confidence 44455554433332 355578999999999999999999999888876642 4667799999999999999999
Q ss_pred HHHHHHHHHHHHhccCCC
Q 029655 163 GGIAWHALDLLLDLLSAS 180 (190)
Q Consensus 163 ~~ii~eav~~Ll~~~~~~ 180 (190)
+.++++++..|++..+++
T Consensus 202 ~~l~~~~~~~Lld~~p~~ 219 (312)
T PRK03557 202 WRLLKESVNELLEGAPVS 219 (312)
T ss_pred HHHHHHHHHHHHccCCCC
Confidence 999999999999876543
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1.8e-07 Score=83.76 Aligned_cols=94 Identities=20% Similarity=0.202 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 029655 81 FRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLA 160 (190)
Q Consensus 81 l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~ 160 (190)
..+++.+..+.+..-+.++..++|-.+.|.|+|..+|+++..++|++..++. |.++++||++++++|++++.
T Consensus 233 i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~ii~ 304 (412)
T KOG1485|consen 233 IAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYIIY 304 (412)
T ss_pred heehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheehhh
Confidence 3455666677777777888999999999999999999999999999999998 56789999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcc
Q 029655 161 TAGGIAWHALDLLLDLLSASPEV 183 (190)
Q Consensus 161 ~~~~ii~eav~~Ll~~~~~~p~~ 183 (190)
.++.-..+++..|++.. .+||.
T Consensus 305 t~~~t~~~~i~~Lvg~~-a~pe~ 326 (412)
T KOG1485|consen 305 TGGRTGLENIKELVGRS-APPEY 326 (412)
T ss_pred hhhHHHHHHHHHHhCCC-CCHHH
Confidence 99999999999999873 45544
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=97.59 E-value=2.5e-05 Score=66.13 Aligned_cols=90 Identities=24% Similarity=0.128 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchH-HHHHHHHHHHHHH
Q 029655 81 FRLGLASDVGLAAGKALTGYLSG--STAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHG-KFETLGALGISSM 157 (190)
Q Consensus 81 l~isl~~nl~l~i~ki~~g~~s~--S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~-r~E~l~ali~sv~ 157 (190)
..+++++|+++.......+...+ |..+.+++.|.+.|++.++.++++..+.... ++. .+|++++++++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 66788888888888888888888 9999999999999999999998888776531 233 4999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 029655 158 LLATAGGIAWHALDLLLDLL 177 (190)
Q Consensus 158 li~~~~~ii~eav~~Ll~~~ 177 (190)
++..++.++++++..|++..
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~ 201 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDAS 201 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-S
T ss_pred Hhhhhhhchhhhhccccccc
Confidence 99999999999999999875
No 19
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.0009 Score=58.23 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHH
Q 029655 79 NIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSML 158 (190)
Q Consensus 79 r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~l 158 (190)
-+..+++++|++.+..-.-. ...+.-+-+--+|.+.|.+.+..++++-..... +||.++|++.++++++++
T Consensus 129 ~va~~GL~vN~~~a~ll~~~--~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~-------~~w~~~Dpi~si~i~~li 199 (296)
T COG1230 129 VVAIIGLVVNLVSALLLHKG--HEENLNMRGAYLHVLGDALGSVGVIIAAIVIRF-------TGWSWLDPILSIVIALLI 199 (296)
T ss_pred HHHHHHHHHHHHHHHHhhCC--CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCccchHHHHHHHHHH
Confidence 34556666666554443322 223788888899999999999988888777664 788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 029655 159 LATAGGIAWHALDLLLDLLSASP 181 (190)
Q Consensus 159 i~~~~~ii~eav~~Ll~~~~~~p 181 (190)
+..++.+++++.+.|++..++..
T Consensus 200 l~~a~~l~k~s~~iLle~~P~~i 222 (296)
T COG1230 200 LSSAWPLLKESLNILLEGVPEGI 222 (296)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcc
Confidence 99999999999999998876443
No 20
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.051 Score=48.06 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccc
Q 029655 112 AHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLATAGGIAWHALDLLLDLLSASPEVV 184 (190)
Q Consensus 112 ~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~~~~~ii~eav~~Ll~~~~~~p~~~ 184 (190)
.|-++|.+.+..++++-.+.+. +||..+||+..++++++++...+-+++++.+.|+.. .||+..
T Consensus 212 LHVLaDtlgSvGviist~Li~~-------~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~--tPp~~~ 275 (354)
T KOG1484|consen 212 LHVLADTLGSVGVIISTLLIKL-------FGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQR--TPPHLE 275 (354)
T ss_pred HHHHHHHhcchHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChhhh
Confidence 3778888888888888888765 799999999999999999999999999999999965 445444
No 21
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=87.46 E-value=2.4 Score=38.10 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=59.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 029655 104 STAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLATAGGIAWHALDLLLDLLSA 179 (190)
Q Consensus 104 S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~~~~~ii~eav~~Ll~~~~~ 179 (190)
+..+-|--+|-+.|++=+..++++-.+.+- -=+|--+|++-.++.+++.+.+.+.++++.+..||++.+.
T Consensus 223 n~nvraAyiHVlGDliQSvGV~iaa~Ii~f------~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~ 292 (379)
T KOG1482|consen 223 NLNVRAAFVHVLGDLIQSVGVLIAALIIYF------KPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPR 292 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhheeEEe------cccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCc
Confidence 666677778999999999999888877762 2256679999999999999999999999999999987643
No 22
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=69.40 E-value=76 Score=27.54 Aligned_cols=25 Identities=8% Similarity=-0.075 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 150 GALGISSMLLATAGGIAWHALDLLL 174 (190)
Q Consensus 150 ~ali~sv~li~~~~~ii~eav~~Ll 174 (190)
.-.+.+++++.+|++++++.++.++
T Consensus 254 ~p~~s~~l~i~~G~~~~~~~~~~~~ 278 (279)
T PRK10019 254 APYFSSLLIGLVGVYMGVHGFMGIM 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3367888999999999999888775
No 23
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=65.79 E-value=15 Score=23.64 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=21.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 136 DKEHPYGHGKFETLGALGISSMLLATAGGIAW 167 (190)
Q Consensus 136 ~~~~p~G~~r~E~l~ali~sv~li~~~~~ii~ 167 (190)
+..|.|-|+.+. +++++.+.+++++|+.++.
T Consensus 4 ~~pF~YDy~tLr-igGLi~A~vlfi~Gi~iil 34 (50)
T PF02038_consen 4 DDPFYYDYETLR-IGGLIFAGVLFILGILIIL 34 (50)
T ss_dssp CSGGGGCHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccchhHhh-ccchHHHHHHHHHHHHHHH
Confidence 345666666665 4788888888888887653
No 24
>COG4035 Predicted membrane protein [Function unknown]
Probab=64.74 E-value=9.4 Score=27.87 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 029655 123 IALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLATA 162 (190)
Q Consensus 123 ~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~~~ 162 (190)
..++++....|| ||+|+|++.+-+.+++++..+
T Consensus 73 ~flig~v~gMRP-------GYGR~Etv~Gt~LA~l~wL~~ 105 (108)
T COG4035 73 CFLIGFVLGMRP-------GYGRVETVVGTFLAVLLWLYF 105 (108)
T ss_pred HHHHHHhhccCC-------CCceeehhHHHHHHHHHHHhh
Confidence 445666665564 899999999977777666544
No 25
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=57.89 E-value=73 Score=23.41 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 029655 141 YGHGKFETLGALGISSMLLAT 161 (190)
Q Consensus 141 ~G~~r~E~l~ali~sv~li~~ 161 (190)
=||+|.|.+.++++++++.+.
T Consensus 77 PGYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 77 PGYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred CCCCeehhhhhHHHHHHHHHH
Confidence 389999999999999887764
No 26
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=53.76 E-value=69 Score=27.92 Aligned_cols=80 Identities=14% Similarity=0.006 Sum_probs=62.9
Q ss_pred HHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029655 98 TGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLATAGGIAWHALDLLLDLL 177 (190)
Q Consensus 98 ~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~~~~~ii~eav~~Ll~~~ 177 (190)
......|.-+.+|..-=+.|.+.+...+++...+.--...+|.+=--.+||+.-.++++.++-.-+..++.++..++...
T Consensus 148 ~nrr~~s~lIald~kqW~Mst~lS~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmt 227 (314)
T COG3965 148 LNRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMT 227 (314)
T ss_pred hhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcC
Confidence 34556788888898888999999998888888776444444545445689999999999999999999999998876543
No 27
>COG4331 Predicted membrane protein [Function unknown]
Probab=49.47 E-value=1.2e+02 Score=23.95 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 029655 83 LGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAK 132 (190)
Q Consensus 83 isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~ 132 (190)
.+++.-..+..+++.-...+||..|+. -+..|++..++.+.-+|..+
T Consensus 111 lsi~vl~lFI~YQlyr~~~t~Si~liv---lti~Dv~viiLtllEYR~lk 157 (167)
T COG4331 111 LSILVLVLFILYQLYRFFNTGSISLIV---LTIFDVFVIILTLLEYRLLK 157 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 556666677889999999999999986 67889999989888888765
No 28
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=48.28 E-value=78 Score=24.23 Aligned_cols=46 Identities=7% Similarity=-0.058 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hchHH-HHHhHHHHHHHHHHHHHHHHH
Q 029655 82 RLGLASDVGLAAGKALTGYL--SGSTA-IIADAAHSISDVVLSSIALWS 127 (190)
Q Consensus 82 ~isl~~nl~l~i~ki~~g~~--s~S~a-L~ADa~hsl~Dv~s~~~~l~~ 127 (190)
-+++++|++++++-...+.+ +++.. -..++..-+.-+++.++++++
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvA 126 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVA 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 36667788776666554433 33333 334444444444444444443
No 29
>COG1009 NuoL NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=40.37 E-value=1.9e+02 Score=27.87 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=62.8
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHH---------HHHHHHHHHHHHHHHHhcCCCCCC
Q 029655 68 HHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHS---------ISDVVLSSIALWSYKAAKAPKDKE 138 (190)
Q Consensus 68 ~~~~~~~~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hs---------l~Dv~s~~~~l~~l~~s~~~~~~~ 138 (190)
+++++.++.++|++.+.-+.++.+...-+.....+|+.....+-.+. ...+.+.++.+-+.. .+-+
T Consensus 149 ~~~~~a~~aA~kAflvtrvGdl~ll~gi~~L~~~~G~~~~~~~l~~~~~~~~~~~~~~~~~~lll~~Ga~~-----KSAQ 223 (606)
T COG1009 149 YSRPSARRAARKAFLVTRVGDLGLLLGIILLYLLTGTTLLSEELFAAALFADISPPLLTLILLLLLLGAFG-----KSAQ 223 (606)
T ss_pred cCCcchhHHHHHHhhhhcchHHHHHHHHHHHHHHhCccccHHHHhhhcchhhhcchHHHHHHHHHHHHhhh-----hhcc
Confidence 34456688899999999999999999999999999955444443322 222222223322332 3345
Q ss_pred CCCchHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 139 HPYGHGKF------ETLGALGISSMLLATAGGIAWHALD 171 (190)
Q Consensus 139 ~p~G~~r~------E~l~ali~sv~li~~~~~ii~eav~ 171 (190)
+|+=..-- -|+.+++=+..|+..|++++...-.
T Consensus 224 fPfH~WLpdAMegPTPVSAliHaATMV~AGvyLvaR~~p 262 (606)
T COG1009 224 FPFHTWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSP 262 (606)
T ss_pred cchHhhhhhhhcCCChHHHHHHHHHHHHcchhHHhHHHH
Confidence 77733222 2578887788888888887665433
No 30
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=39.39 E-value=39 Score=34.43 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHH
Q 029655 80 IFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHS 114 (190)
Q Consensus 80 ~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hs 114 (190)
++.+.+++.++++++-...-++..++..+++-++.
T Consensus 458 VL~l~~liy~Fv~LaIv~dDyFVPSLe~IAekLgL 492 (1096)
T TIGR00927 458 VLHIFGMMYVFVALAIVCDEYFVPALGVITDKLQI 492 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCC
Confidence 33333344444444444445677777777776654
No 31
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=37.99 E-value=2.8e+02 Score=24.41 Aligned_cols=26 Identities=8% Similarity=-0.152 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 144 GKFETLGALGISSMLLATAGGIAWHA 169 (190)
Q Consensus 144 ~r~E~l~ali~sv~li~~~~~ii~ea 169 (190)
.|.-.+..++.++++++.|+..+..+
T Consensus 275 ~~~~~~~~l~~gli~l~~g~~~l~~~ 300 (303)
T COG2215 275 KRISYIVSLLGGLIGLYFGLHLLLGS 300 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455777788888888888776654
No 32
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=37.74 E-value=1.4e+02 Score=25.27 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 88 DVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLATAGGIAW 167 (190)
Q Consensus 88 nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~~~~~ii~ 167 (190)
..++=-.-..++.++|......+-+||++|.++..+.=.-+.+.. +... |+++-++..++.+..++.+.+
T Consensus 45 A~i~DglDG~VAR~~~~~s~~G~~lDSLaD~VsFgVaPA~l~y~~---------~~~~-~~~~~~~a~~~~~~~alRLAr 114 (234)
T COG1183 45 ALILDGLDGRVARKLNAKSAFGAELDSLADLVSFGVAPALLLYSS---------GLNT-GPLGLLAALLYVLCGALRLAR 114 (234)
T ss_pred HHHHcccchHHHHhcCCcchHHHHHhHHHHHHHhhHHHHHHHHHH---------hccC-CcHHHHHHHHHHHHHHHHHHH
Confidence 333434445567788888888999999999998876433332222 1111 445555555666666666655
Q ss_pred HHH
Q 029655 168 HAL 170 (190)
Q Consensus 168 eav 170 (190)
-++
T Consensus 115 FN~ 117 (234)
T COG1183 115 FNV 117 (234)
T ss_pred ccC
Confidence 443
No 33
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=37.29 E-value=2.5e+02 Score=23.57 Aligned_cols=71 Identities=21% Similarity=0.044 Sum_probs=35.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Q 029655 106 AIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGAL----------------GISSMLLATAGGIAWHA 169 (190)
Q Consensus 106 aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~al----------------i~sv~li~~~~~ii~ea 169 (190)
..++=.+|...+.++....+......++.. ..+-.-+.-..|++++ ..++++.+.++.++|-+
T Consensus 203 ~~~ai~~Hk~~e~~~~~~~l~~~~~~~~~~-~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~ 281 (317)
T PF02535_consen 203 LFIAIILHKIPEGFALGSILVKAGFSKRKA-LLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVA 281 (317)
T ss_pred HHHHHHHhHhHHHhhhhhhhhhhccccchh-hHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655554443332211 1123333444554443 23444556666667777
Q ss_pred HHHHHhcc
Q 029655 170 LDLLLDLL 177 (190)
Q Consensus 170 v~~Ll~~~ 177 (190)
+..++-..
T Consensus 282 ~~ell~~~ 289 (317)
T PF02535_consen 282 FVELLPEE 289 (317)
T ss_pred HHHHHHHH
Confidence 77765433
No 34
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=32.86 E-value=1.5e+02 Score=19.84 Aligned_cols=31 Identities=16% Similarity=-0.025 Sum_probs=20.4
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 029655 134 PKDKEHPYGHGKFETLGALGISSMLLATAGG 164 (190)
Q Consensus 134 ~~~~~~p~G~~r~E~l~ali~sv~li~~~~~ 164 (190)
+...++..+..++|.+-.++=.++++..++.
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~p 80 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFP 80 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhh
Confidence 4555667778889999988888888777664
No 35
>PF10002 DUF2243: Predicted membrane protein (DUF2243); InterPro: IPR018719 This entry includes membrane proteins of unknown function.
Probab=32.82 E-value=2.4e+02 Score=22.08 Aligned_cols=57 Identities=11% Similarity=-0.036 Sum_probs=35.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 105 TAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSMLLATAGGIAWHAL 170 (190)
Q Consensus 105 ~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~E~l~ali~sv~li~~~~~ii~eav 170 (190)
.-+++|++.+...-+.+.+.++-++.+.++.+...+. ..+.+.+++..|.+=++|.+
T Consensus 43 ~n~~~DGLFHa~~~~~~~~Gl~lL~r~~~r~~~~~~~---------~~~~g~~l~G~G~Fnl~dG~ 99 (143)
T PF10002_consen 43 LNLLSDGLFHAFTWVATVAGLFLLWRADRRRRRPWSG---------RRLWGGVLLGWGLFNLVDGV 99 (143)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHhhhccccCccc---------hhhHHHHHHHhhHHHHHHHH
Confidence 5688999999998888888888877655443332222 12344444555555455553
No 36
>PRK06525 hydrogenase 4 subunit D; Validated
Probab=30.89 E-value=4.1e+02 Score=24.41 Aligned_cols=56 Identities=11% Similarity=0.075 Sum_probs=37.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHH
Q 029655 73 SGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSY 128 (190)
Q Consensus 73 ~~~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l 128 (190)
.+++-||.+..+.+.+..+....+..+...+..++.+--+|.+.+.+......+..
T Consensus 292 ~Q~dlKrllAYSSI~~~G~il~~l~~~~~~~~~~~~~~l~~~~~h~~~k~~lF~~~ 347 (479)
T PRK06525 292 PQQDMKRLLAYSTITQLGYMFFGLSLAILGSRLALEGSIAYIFNHAFAKSLFFLVA 347 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777778887777776655444455666777778888877766554443
No 37
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=27.94 E-value=2.5e+02 Score=20.75 Aligned_cols=21 Identities=10% Similarity=-0.176 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029655 144 GKFETLGALGISSMLLATAGG 164 (190)
Q Consensus 144 ~r~E~l~ali~sv~li~~~~~ 164 (190)
++.|-+.+.+.+++-...-..
T Consensus 94 ~~~dr~lG~~~G~~~~~li~~ 114 (146)
T PF02674_consen 94 GWLDRLLGALLGLAKGLLILS 114 (146)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444444
No 38
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=27.32 E-value=2.7e+02 Score=20.96 Aligned_cols=54 Identities=15% Similarity=-0.044 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHH-HHhcCCCCCCCCCchHHHHHH
Q 029655 92 AAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSY-KAAKAPKDKEHPYGHGKFETL 149 (190)
Q Consensus 92 ~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l-~~s~~~~~~~~p~G~~r~E~l 149 (190)
.+..+..++.+++.++.--+. =+...+.++++- .+++.+..+-..|=|.++|..
T Consensus 38 ~~~gl~la~~~g~~a~~pt~~----ll~~~~~v~~gg~~l~rlKRGKP~~yl~r~l~~~ 92 (121)
T PF11990_consen 38 LVVGLPLALLTGWWAMIPTGA----LLGPILGVFVGGKLLARLKRGKPEGYLYRRLQWR 92 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHcCCchhHHHHHHHHH
Confidence 445555666677775444332 122222223332 334433333333555666654
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.25 E-value=56 Score=29.06 Aligned_cols=50 Identities=14% Similarity=-0.102 Sum_probs=28.8
Q ss_pred HHHHHhcCCCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029655 126 WSYKAAKAPKDKEHPYGHGKFET-LGALGISSMLLATAGGIAWHALDLLLD 175 (190)
Q Consensus 126 ~~l~~s~~~~~~~~p~G~~r~E~-l~ali~sv~li~~~~~ii~eav~~Ll~ 175 (190)
++.+++..+..--..||-.++|+ +..+++.++++++.+++++--+..++.
T Consensus 17 ~~~~~~~~~Gyv~i~~~~~~ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (398)
T PRK10747 17 VGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEWLLRRIFR 67 (398)
T ss_pred HHHHHcCCCCeEEEEECCEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555545455677777776 445555555555555566666666653
No 40
>COG0651 HyfB Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=26.02 E-value=5.4e+02 Score=24.00 Aligned_cols=100 Identities=19% Similarity=0.047 Sum_probs=53.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhchHH--HHHhHHHH----H--HHHHHHHHHHHHHHHhcCCCCCCCCCchHHH
Q 029655 75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTA--IIADAAHS----I--SDVVLSSIALWSYKAAKAPKDKEHPYGHGKF 146 (190)
Q Consensus 75 ~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~a--L~ADa~hs----l--~Dv~s~~~~l~~l~~s~~~~~~~~p~G~~r~ 146 (190)
+...+-++++.+...++.+.-......+||.. -++..... . ..+...+++-++.|..-.|-..=-|.-|...
T Consensus 157 ~a~~~Y~i~~~~~~~l~L~gv~lly~~tGtln~~~i~~~~~~~~~~~~~~~~~~L~ligf~~KaglfPlh~WLP~A~~~a 236 (504)
T COG0651 157 SAGFKYLILGHIGTLLLLIGVGLLYAATGTLNFADIALKLSSELDPGLGIAAFLLLLIGFGVKAGLFPLHFWLPDAHSEA 236 (504)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHHHHHHhCcccHHHHHHHhhcccCchHHHHHHHHHHHHHHHhcccCchhhhhhhhhccC
Confidence 45677788888888888888888888899643 33333221 1 1233333333444444333222223444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 147 ETLGALGISSMLLATAGGIAWHALDLLL 174 (190)
Q Consensus 147 E~l~ali~sv~li~~~~~ii~eav~~Ll 174 (190)
..-.+-+.|.++..+|++.+..-+-...
T Consensus 237 p~pvSAllS~v~~k~g~y~i~ril~~~~ 264 (504)
T COG0651 237 PSPVSALLSGVLVKVGVYGILRILYLVF 264 (504)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4434444555555555665555444444
No 41
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.62 E-value=3.9e+02 Score=22.12 Aligned_cols=29 Identities=17% Similarity=0.006 Sum_probs=20.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 029655 136 DKEHPYGHGKFETLGALGISSMLLATAGG 164 (190)
Q Consensus 136 ~~~~p~G~~r~E~l~ali~sv~li~~~~~ 164 (190)
..++..+..++|.+..++-.++++..++.
T Consensus 51 ~~~~~~~~~~lE~~WtviP~iil~~l~~~ 79 (228)
T MTH00140 51 SCRTILEAQKLETIWTIVPALILVFLALP 79 (228)
T ss_pred CCccccccchhhhhhhhHHHHHHHHHHHH
Confidence 34566788899998887777666655444
No 42
>KOG3195 consensus Uncharacterized membrane protein NPD008/CGI-148 [General function prediction only]
Probab=25.01 E-value=3.5e+02 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.001 Sum_probs=18.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHH
Q 029655 73 SGKDAENIFRLGLASDVGLAAGKALTG 99 (190)
Q Consensus 73 ~~~~~~r~l~isl~~nl~l~i~ki~~g 99 (190)
..+.++|+.|+++.++-++.+.-.+.+
T Consensus 117 ~n~~dsriFWlgL~~~pv~W~if~v~a 143 (213)
T KOG3195|consen 117 VNAIDSRIFWLGLYLCPVIWIIFAVFA 143 (213)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999887766655444443
No 43
>COG0651 HyfB Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=24.35 E-value=4.6e+02 Score=24.48 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=42.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHH
Q 029655 73 SGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYK 129 (190)
Q Consensus 73 ~~~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~ 129 (190)
.+++-||.+..+.+.++......+..|...+ +.+--+|.+.|.+......++..
T Consensus 294 ~q~d~KRlLAYsti~q~G~illg~~ig~~~~---l~~ai~~~l~H~l~K~~LFL~aG 347 (504)
T COG0651 294 LQKDIKRLLAYSTVSQMGYILLGLGIGTPLG---LAGAIFHLLNHALVKALLFLGAG 347 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888888888887766655 78888899999998877766665
No 44
>MTH00150 ND4 NADH dehydrogenase subunit 4; Provisional
Probab=23.38 E-value=5.6e+02 Score=23.15 Aligned_cols=76 Identities=12% Similarity=-0.004 Sum_probs=39.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCchHHHHHHH
Q 029655 74 GKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKA---PKDKEHPYGHGKFETLG 150 (190)
Q Consensus 74 ~~~~~r~l~isl~~nl~l~i~ki~~g~~s~S~aL~ADa~hsl~Dv~s~~~~l~~l~~s~~---~~~~~~p~G~~r~E~l~ 150 (190)
+++-||.+..+.+.+..+....+..+ +..++.+--+|.+.+.+.............+ .++.+.--|..|-.|+.
T Consensus 238 Q~dlKrllAYSSIsh~G~il~gi~~~---~~~~~~~~l~~~~~h~~~k~~lF~~~g~i~~~~~~~~i~~l~Gl~~~~P~~ 314 (417)
T MTH00150 238 QSDVKSLIAYSSVGHMSLVLAGVLSN---TSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSL 314 (417)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCceeHHHhcChHHHHHHH
Confidence 34455555555555555554444332 3345666677888888777666555443221 12222223555555554
Q ss_pred HH
Q 029655 151 AL 152 (190)
Q Consensus 151 al 152 (190)
++
T Consensus 315 ~~ 316 (417)
T MTH00150 315 SL 316 (417)
T ss_pred HH
Confidence 43
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.08 E-value=1e+02 Score=27.37 Aligned_cols=49 Identities=10% Similarity=-0.151 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 126 WSYKAAKAPKDKEHPYGHGKFET-LGALGISSMLLATAGGIAWHALDLLL 174 (190)
Q Consensus 126 ~~l~~s~~~~~~~~p~G~~r~E~-l~ali~sv~li~~~~~ii~eav~~Ll 174 (190)
++.+++..+..-...||-.++|+ +..+++.++++++.+++++--+..++
T Consensus 17 ~~~~~~~~~Gyv~i~~~~~~ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (409)
T TIGR00540 17 AGPMIAGHQGYVLIETANRIIEMSITGLAIFFIIALAIIFAFEWGLRRFF 66 (409)
T ss_pred HHHHHcCCCCeEEEEECCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555545555677777876 44444444444455555555565555
No 46
>COG4966 PilW Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.43 E-value=96 Score=27.49 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.3
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029655 134 PKDKEHPYGHGKFETLGALGISSMLLATAGGIAWH 168 (190)
Q Consensus 134 ~~~~~~p~G~~r~E~l~ali~sv~li~~~~~ii~e 168 (190)
....+..-|+.-+|-+.+++++++++...+.+++.
T Consensus 6 ~~~~rrqrG~SLIELMIallIglivL~av~s~y~~ 40 (318)
T COG4966 6 RARPRRQRGFSLIELMIALLIGLIVLLAVGSLYLS 40 (318)
T ss_pred cccccccCCccHHHHHHHHHHHHHHHHHHhheeee
Confidence 34455677999999999999999999888887543
No 47
>KOG4349 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.14 E-value=2.8e+02 Score=21.38 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 029655 107 IIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGH 143 (190)
Q Consensus 107 L~ADa~hsl~Dv~s~~~~l~~l~~s~~~~~~~~p~G~ 143 (190)
|+|----.+..+.+.++.++++| +|+||.
T Consensus 51 LWal~Ss~fih~~A~ilalFTLR--------kHkygr 79 (143)
T KOG4349|consen 51 LWALLSSMFIHLGATILALFTLR--------KHKYGR 79 (143)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhh--------cCccce
Confidence 44444455566777788888885 467765
Done!