Query 029655
Match_columns 190
No_of_seqs 140 out of 1210
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 18:17:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029655.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2276-2280//hhsearch_pdb/029655hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 1.0 1 1 150.8 5.6 104 75-178 9-112 (306)
2 3h90_A Ferrous-iron efflux pum 1.0 1 1 150.4 4.1 105 77-181 2-106 (283)
3 3j1z_P YIIP, cation efflux fam 1.0 1 1 65.8 1.4 93 79-179 121-213 (306)
4 3h90_A Ferrous-iron efflux pum 1.0 1 1 65.1 1.2 94 78-179 111-204 (283)
5 4g1u_A Hemin transport system 1.0 1 1 15.9 6.7 10 97-106 46-55 (357)
6 2zxe_G FXYD10, phospholemman-l 1.0 1 1 15.2 3.7 33 135-168 8-40 (74)
7 2jp3_A FXYD domain-containing 1.0 1 1 15.1 4.3 40 134-174 5-45 (67)
8 3hr4_A Nitric oxide synthase, 1.0 1 1 13.9 1.2 38 66-103 2-39 (219)
9 4dve_A Biotin transporter BIOY 1.0 1 1 13.8 3.2 33 62-94 1-33 (198)
10 3fyb_A Protein of unknown func 1.0 1 1 13.1 -0.4 12 7-18 38-49 (104)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=1.00 E-value=1 Score=150.76 Aligned_cols=104 Identities=29% Similarity=0.343 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02568999999999999999999999731398999199999989999999999999417999899872678999999999
Q 029655 75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGI 154 (190)
Q Consensus 75 ~~~~r~l~i~l~~nl~l~v~k~~~~~~sgS~AL~ADa~hsl~D~~~~~i~l~~~~~s~~~~~~~~p~G~~rlE~l~aL~~ 154 (190)
.-.+++.++++++|+++++.|+++|+++||.||++|++|++.|+++.++.+++.+.++|++|.+|||||+|+|+++++++
T Consensus 9 ~~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~ 88 (306)
T 3j1z_P 9 FWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQ 88 (306)
T ss_dssp CCSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999999999999982799999999999999999999999999379996548984266999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999999871249
Q 029655 155 SSMLLATAGGIAWHALDLLLDLLS 178 (190)
Q Consensus 155 si~Ll~~~~~ii~~si~~L~~~~~ 178 (190)
+++++..++.++++++++++++..
T Consensus 89 ~~~l~~~~~~i~~eai~~l~~p~~ 112 (306)
T 3j1z_P 89 SAFIMGSAFLLLFYGGERLLNPSP 112 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHEECCCC
T ss_conf 999999999998976652016877
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=1.00 E-value=1 Score=150.36 Aligned_cols=105 Identities=24% Similarity=0.258 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 56899999999999999999999973139899919999998999999999999941799989987267899999999999
Q 029655 77 AENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISS 156 (190)
Q Consensus 77 ~~r~l~i~l~~nl~l~v~k~~~~~~sgS~AL~ADa~hsl~D~~~~~i~l~~~~~s~~~~~~~~p~G~~rlE~l~aL~~si 156 (190)
.+|+.++++++|+++++.|+++|+.+||.+|++|++|++.|+++.++.+++.+.++|++|++|||||+|+|+++++++++
T Consensus 2 ~~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~ 81 (283)
T 3h90_A 2 VSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSM 81 (283)
T ss_dssp CCTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 48999999999999999999999993529999989998999999999999999966999988998206799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999871249997
Q 029655 157 MLLATAGGIAWHALDLLLDLLSASP 181 (190)
Q Consensus 157 ~Ll~~~~~ii~~si~~L~~~~~~~p 181 (190)
+++..++.++++++++++++...++
T Consensus 82 ~l~~~~~~i~~eai~~l~~~~~~~~ 106 (283)
T 3h90_A 82 FISGSALFLFLTGIQHLISPTPMTD 106 (283)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999999999728887874
No 3
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=1.00 E-value=1 Score=65.76 Aligned_cols=93 Identities=20% Similarity=0.172 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999997313989991999999899999999999994179998998726789999999999999
Q 029655 79 NIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSML 158 (190)
Q Consensus 79 r~l~i~l~~nl~l~v~k~~~~~~sgS~AL~ADa~hsl~D~~~~~i~l~~~~~s~~~~~~~~p~G~~rlE~l~aL~~si~L 158 (190)
-+..++++.++.+.......+...+|.++.+|+.|...|++.++.++++...+. +|+.++|+++++++++++
T Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I 192 (306)
T 3j1z_P 121 VVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYI 192 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHH
T ss_conf 555468641589999988741136877888887751103553268888899998--------185112068999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999998712499
Q 029655 159 LATAGGIAWHALDLLLDLLSA 179 (190)
Q Consensus 159 l~~~~~ii~~si~~L~~~~~~ 179 (190)
+..++.++++++..|++...+
T Consensus 193 ~~~~~~l~~~s~~~Ll~~~~~ 213 (306)
T 3j1z_P 193 GQQAFDLGYRSIQALLDRELD 213 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999998484544
No 4
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=1.00 E-value=1 Score=65.13 Aligned_cols=94 Identities=26% Similarity=0.242 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 68999999999999999999999731398999199999989999999999999417999899872678999999999999
Q 029655 78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHGKFETLGALGISSM 157 (190)
Q Consensus 78 ~r~l~i~l~~nl~l~v~k~~~~~~sgS~AL~ADa~hsl~D~~~~~i~l~~~~~s~~~~~~~~p~G~~rlE~l~aL~~si~ 157 (190)
--+..+++++|..++......+...+|.++.+|+.|...|++++..++++.... -+|+.++|++++++++++
T Consensus 111 l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~ 182 (283)
T 3h90_A 111 VIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIY 182 (283)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHH
T ss_conf 999999999999999999999987298989999999999999999999999999--------968467779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999998712499
Q 029655 158 LLATAGGIAWHALDLLLDLLSA 179 (190)
Q Consensus 158 Ll~~~~~ii~~si~~L~~~~~~ 179 (190)
++..++.++++++..|++..++
T Consensus 183 i~~~~~~l~~~s~~~Ll~~~~~ 204 (283)
T 3h90_A 183 ILYSALRMGYEAVQSLLDRALP 204 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999998678999
No 5
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=1.00 E-value=1 Score=15.95 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=3.6
Q ss_pred HHHHHHCHHH
Q ss_conf 9999731398
Q 029655 97 LTGYLSGSTA 106 (190)
Q Consensus 97 ~~~~~sgS~A 106 (190)
..+...|+..
T Consensus 46 ~~sl~~G~~~ 55 (357)
T 4g1u_A 46 LGSANMGALS 55 (357)
T ss_dssp HHHHHC----
T ss_pred HHHHHHCCCC
T ss_conf 9999707878
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=1.00 E-value=1 Score=15.24 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=22.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9989987267899999999999999999999999
Q 029655 135 KDKEHPYGHGKFETLGALGISSMLLATAGGIAWH 168 (190)
Q Consensus 135 ~~~~~p~G~~rlE~l~aL~~si~Ll~~~~~ii~~ 168 (190)
.+..|.|-|..+.. ++|+++.+|.++|+.++..
T Consensus 8 ~~dpF~YDY~tLRi-gGLifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 8 NDERFTYDYYRLRV-VGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp CGGGGCCCHHHHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHEE-CCCHHHHHHHHHHHHHHHC
T ss_conf 78984014078434-2305679999999999975
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=15.13 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=24.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 999899872678999999999999999999999999-99987
Q 029655 134 PKDKEHPYGHGKFETLGALGISSMLLATAGGIAWHA-LDLLL 174 (190)
Q Consensus 134 ~~~~~~p~G~~rlE~l~aL~~si~Ll~~~~~ii~~s-i~~L~ 174 (190)
..+..|.|-|..+.. ++|+++.+|.++|+.++... +.--.
T Consensus 5 ~e~dpF~YDY~tLRi-gGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 5 DKGSPFYYDWESLQL-GGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp STTSGGGGGGHHHHH-HHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCCCCCCCHHHHEE-CCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 358986134078524-23056799999999999737534567
No 8
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=13.88 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88777664102568999999999999999999999731
Q 029655 66 HDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSG 103 (190)
Q Consensus 66 h~~~~~~~~~~~~r~l~i~l~~nl~l~v~k~~~~~~sg 103 (190)
|+|+++++.+..+|.+....++..+.+..+++.-.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~av~~~~~l~~~~~~~ 39 (219)
T 3hr4_A 2 HHHHHDEKRRPKRREIPLKVLVKAVLFACMLMRKTMAS 39 (219)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 75443411277546568899999999999999998835
No 9
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=1.00 E-value=1 Score=13.84 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 588888777664102568999999999999999
Q 029655 62 LGHSHDHHQQLSGKDAENIFRLGLASDVGLAAG 94 (190)
Q Consensus 62 ~~h~h~~~~~~~~~~~~r~l~i~l~~nl~l~v~ 94 (190)
|.|.|||++.-+++...|-+........++.+.
T Consensus 1 ~~~~~~~~~am~~~~k~r~l~~~alfaAliavl 33 (198)
T 4dve_A 1 MHHHHHHHHAMTNNQKVKTLTYSAFMTAFIIIL 33 (198)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 974114688864128899999999999999999
No 10
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=1.00 E-value=1 Score=13.07 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHH
Q ss_conf 248024667742
Q 029655 7 NINSMCRTYITR 18 (190)
Q Consensus 7 ~~~~~~~~~~~~ 18 (190)
+|+.|||-|.|+
T Consensus 38 nLAGFCRNCLsk 49 (104)
T 3fyb_A 38 IQADFCRNCLAK 49 (104)
T ss_dssp HHHSCCHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 998888988999
Done!