BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029656
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 221 bits (562), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/173 (64%), Positives = 127/173 (73%), Gaps = 10/173 (5%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKN 58
+ ++I N + K PP KF + RIL+TGGAGF+GSHL DKLM + +
Sbjct: 63 LREKIQNLERSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLM-MDGH 114
Query: 59 EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
EV VVDN+FTG K N+ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+
Sbjct: 115 EVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPI 174
Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct: 175 KTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIG 227
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 219 bits (559), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 116/138 (84%), Gaps = 1/138 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 88 RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 146
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 147 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 206
Query: 154 PLVHPQDESYWGNVNPIG 171
P VHPQ+E YWG+VNPIG
Sbjct: 207 PEVHPQNEDYWGHVNPIG 224
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 154 PLVHPQDESYWGNVNPIG 171
P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 154 PLVHPQDESYWGNVNPIG 171
P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 154 PLVHPQDESYWGNVNPIG 171
P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 154 PLVHPQDESYWGNVNPIG 171
P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 22/161 (13%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
ILVTGGAGFIGSH+VDKL+EN +VI++DN TG+K+N+ +P+ E + D+ +
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNY-DVIILDNLTTGNKNNI-----NPKAEFVNADIRDKD 55
Query: 95 LIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTS 146
L E V+ + H A + NPV NV+GT+N+L + ++ + + +S
Sbjct: 56 LDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASS 115
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGE 187
VYG+P P DE++ +NP+ + G+ K +GE
Sbjct: 116 GGAVYGEPNYLPVDENH--PINPLSPY------GLSKYVGE 148
>sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=arnA PE=3 SV=1
Length = 673
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S+ + R+L+ G GFIG+HL ++L+ +++ E+ +D S D + +++G PRF
Sbjct: 316 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 371
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ R
Sbjct: 372 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 431
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 432 KRIVFPSTSEVYG 444
>sp|C6DAW5|ARNA_PECCP Bifunctional polymyxin resistance protein ArnA OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3
SV=1
Length = 672
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S+ + R+L+ G GFIG+HL ++L+ +++ E+ +D S D + +++G PRF
Sbjct: 315 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 370
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ R
Sbjct: 371 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 430
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 431 KRIVFPSTSEVYG 443
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 11/150 (7%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
MR LVTG AGFIGS LVD+L+ + + V+ +D+ +G +NL +FE ++ D+ +
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLAD-GHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVD 59
Query: 93 P----LLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
LL E + I+HLA S +P NV+GT+ + A+ G R ++ +
Sbjct: 60 ADLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHT 119
Query: 147 TS--EVYGDPLVHPQDESYWGNVNPIGMFS 174
+S VYG P +P E VNP ++
Sbjct: 120 SSGGSVYGTPPAYPTSEDM--PVNPASPYA 147
>sp|B1JJ30|ARNA_YERPY Bifunctional polymyxin resistance protein ArnA OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=arnA
PE=3 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F
Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHF 364
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYN 424
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 425 KRIVFPSTSEVYG 437
>sp|Q93PD8|ARNA_YERPS Bifunctional polymyxin resistance protein ArnA OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=arnA
PE=2 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F
Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHF 364
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYN 424
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 425 KRIVFPSTSEVYG 437
>sp|B2K5L3|ARNA_YERPB Bifunctional polymyxin resistance protein ArnA OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=arnA
PE=3 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F
Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHF 364
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYN 424
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 425 KRIVFPSTSEVYG 437
>sp|A7FHH4|ARNA_YERP3 Bifunctional polymyxin resistance protein ArnA OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=arnA PE=3 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F
Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHF 364
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYN 424
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 425 KRIVFPSTSEVYG 437
>sp|A4TIM4|ARNA_YERPP Bifunctional polymyxin resistance protein ArnA OS=Yersinia pestis
(strain Pestoides F) GN=arnA PE=3 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F
Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHF 364
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYN 424
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 425 KRIVFPSTSEVYG 437
>sp|Q1CIH7|ARNA_YERPN Bifunctional polymyxin resistance protein ArnA OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=arnA PE=3 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F
Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHF 364
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYN 424
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 425 KRIVFPSTSEVYG 437
>sp|A9R093|ARNA_YERPG Bifunctional polymyxin resistance protein ArnA OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=arnA PE=3 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F
Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHF 364
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYN 424
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 425 KRIVFPSTSEVYG 437
>sp|Q8ZDX8|ARNA_YERPE Bifunctional polymyxin resistance protein ArnA OS=Yersinia pestis
GN=arnA PE=3 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F
Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHF 364
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYN 424
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 425 KRIVFPSTSEVYG 437
>sp|Q1C742|ARNA_YERPA Bifunctional polymyxin resistance protein ArnA OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=arnA PE=3 SV=1
Length = 667
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S + R+L+ G GFIG+HL ++L+++++ EV +D GS D + +++G+P F
Sbjct: 309 SNTLKRRTRVLILGVNGFIGNHLTERLLQDDRYEVYGLD---IGS-DAISRFLGNPAFHF 364
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYN 424
Query: 140 ARILLTSTSEVYG 152
RI+ STSEVYG
Sbjct: 425 KRIVFPSTSEVYG 437
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDV 90
MR+LVTGGAGFIG++ V + ++ + V + T G +++L L++ D+
Sbjct: 1 MRLLVTGGAGFIGTNFVHSAVREHPDDAVTVLDALTYAGRRESLAD--VEDAIRLVQGDI 58
Query: 91 TEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 145
T+ L+ E D + H A + NP + TNVIGT +L +R G R+
Sbjct: 59 TDAELVSQLVAESDAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAVRRHGVRLHHI 118
Query: 146 STSEVYGD 153
ST EVYGD
Sbjct: 119 STDEVYGD 126
>sp|Q3KCC1|ARNA_PSEPF Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1
Length = 668
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 10/125 (8%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+ +E+ EV +D GS D + + HPRF + D++
Sbjct: 320 RVLILGVNGFIGNHLSERLLRDERYEVYGLD---IGS-DAIDRLRSHPRFHFVEGDISIH 375
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D + L A+PI Y NP++ + + L ++ + R++ ST
Sbjct: 376 SEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPST 435
Query: 148 SEVYG 152
SEVYG
Sbjct: 436 SEVYG 440
>sp|P21977|GALE_STRTR UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3
SV=1
Length = 332
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
M ILV GGAG+IGSH+VD+L+E + +V+VVD+ TG + + HP + D+++
Sbjct: 1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAV-----HPDAIFYQGDLSD 55
Query: 93 PLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-IL 143
+ +VD + H A + P+K N G + +L + G + I+
Sbjct: 56 QDFMRKVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIV 115
Query: 144 LTSTSEVYGDPLVHPQDESYWGN-VNPIGMFSFVLKDGIMK 183
+ST+ YG P P E+ N +NP G S ++ + IMK
Sbjct: 116 FSSTAATYGIPEEIPILETTPQNPINPYGE-SKLMMETIMK 155
>sp|A8GDR7|ARNA_SERP5 Bifunctional polymyxin resistance protein ArnA OS=Serratia
proteamaculans (strain 568) GN=arnA PE=3 SV=1
Length = 660
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
+ R+L+ G GFIG+HL ++L+ +++ ++ +D GS D + +++G+PRF +
Sbjct: 312 MKRRTRVLILGVNGFIGNHLTERLLRDDRYDIYGLD---IGS-DAISRFLGNPRFHFVEG 367
Query: 89 DVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 142
D++ E + + D I L A+PI Y NP++ + + L ++ + RI
Sbjct: 368 DISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRI 427
Query: 143 LLTSTSEVYG 152
+ STSEVYG
Sbjct: 428 IFPSTSEVYG 437
>sp|Q8Z540|ARNA_SALTI Bifunctional polymyxin resistance protein ArnA OS=Salmonella typhi
GN=arnA PE=3 SV=1
Length = 660
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
+AQ + ++PP T R +R+L+ G GFIG+HL ++L++ E EV
Sbjct: 292 LAQTLGLVAGACLNRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLDEENYEV 343
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYK 114
+D GS + + +++ HPRF + D++ E + + D + L A+PI Y
Sbjct: 344 YGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT 399
Query: 115 YNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
NP++ + + L ++ + R++ STSEVYG
Sbjct: 400 RNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|B5BCP6|ARNA_SALPK Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1
Length = 660
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
+AQ + ++PP T R +R+L+ G GFIG+HL ++L++ E EV
Sbjct: 292 LAQTLGLVAGACLNRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLDEENYEV 343
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYK 114
+D GS + + +++ HPRF + D++ E + + D + L A+PI Y
Sbjct: 344 YGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT 399
Query: 115 YNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
NP++ + + L ++ + R++ STSEVYG
Sbjct: 400 RNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|Q5PNA6|ARNA_SALPA Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=arnA PE=3
SV=1
Length = 660
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
+AQ + ++PP T R +R+L+ G GFIG+HL ++L++ E EV
Sbjct: 292 LAQTLGLVAGACLNRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLDEENYEV 343
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYK 114
+D GS + + +++ HPRF + D++ E + + D + L A+PI Y
Sbjct: 344 YGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYT 399
Query: 115 YNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
NP++ + + L ++ + R++ STSEVYG
Sbjct: 400 RNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|A4SQW9|ARNA_AERS4 Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
salmonicida (strain A449) GN=arnA PE=3 SV=1
Length = 663
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+++ + E+ +D S L ++I HP F + D++
Sbjct: 319 RVLILGVNGFIGNHLTERLLKDGRYEIYGLDI----SASALGRFIDHPHFHFVEGDISIH 374
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D I L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 375 TEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPST 434
Query: 148 SEVYGDPLVHPQDE 161
SEVYG H DE
Sbjct: 435 SEVYGMCDDHSFDE 448
>sp|B2VBI9|ARNA_ERWT9 Bifunctional polymyxin resistance protein ArnA OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3
SV=1
Length = 660
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 10/129 (7%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
+ R+L+ G GFIG+HL ++L+ ++ EV +D GS D + ++IGH RF + D
Sbjct: 313 KRRTRVLILGVNGFIGNHLTERLLVDDNFEVFGLD---IGS-DAIGRFIGHERFHFVEGD 368
Query: 90 VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
++ E + + D + L A+PI Y NP++ + + L ++ + RI+
Sbjct: 369 ISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYKKRII 428
Query: 144 LTSTSEVYG 152
STSEVYG
Sbjct: 429 FPSTSEVYG 437
>sp|B7LM76|ARNA_ESCF3 Bifunctional polymyxin resistance protein ArnA OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=arnA PE=3 SV=1
Length = 660
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
Q R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D
Sbjct: 313 QRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLTHPNFHFVEGD 368
Query: 90 VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
++ E + + D + L A+PI Y NP++ + + L ++ + RI+
Sbjct: 369 ISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVQYHKRII 428
Query: 144 LTSTSEVYG 152
STSEVYG
Sbjct: 429 FPSTSEVYG 437
>sp|B5FNT9|ARNA_SALDC Bifunctional polymyxin resistance protein ArnA OS=Salmonella dublin
(strain CT_02021853) GN=arnA PE=3 SV=1
Length = 660
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|A8FRR2|ARNA_SHESH Bifunctional polymyxin resistance protein ArnA OS=Shewanella
sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1
Length = 660
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
++L+ G GFIG+HL +L+++ K E+ +D S + + + HP F + D+T
Sbjct: 319 KVLIMGANGFIGNHLTKRLLDDGKYEIYAMDM----SSSQIEQHLSHPDFHFVEGDITIH 374
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 375 NEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRACVKYDKRIIFPST 434
Query: 148 SEVYGDPLVHPQDESYWGNVNPI 170
SEVYG DE + + +P+
Sbjct: 435 SEVYG----MCTDEEFDEDTSPL 453
>sp|B5R272|ARNA_SALEP Bifunctional polymyxin resistance protein ArnA OS=Salmonella
enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1
Length = 660
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|B4TBG6|ARNA_SALHS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
heidelberg (strain SL476) GN=arnA PE=3 SV=1
Length = 660
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|B5EZH8|ARNA_SALA4 Bifunctional polymyxin resistance protein ArnA OS=Salmonella agona
(strain SL483) GN=arnA PE=3 SV=1
Length = 660
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|B4SYX1|ARNA_SALNS Bifunctional polymyxin resistance protein ArnA OS=Salmonella
newport (strain SL254) GN=arnA PE=3 SV=1
Length = 660
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|B5RCC4|ARNA_SALG2 Bifunctional polymyxin resistance protein ArnA OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3
SV=1
Length = 660
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|B4TPI2|ARNA_SALSV Bifunctional polymyxin resistance protein ArnA OS=Salmonella
schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1
Length = 660
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|A9N5B2|ARNA_SALPB Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3
SV=1
Length = 660
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|P0C0R6|ARNA_SALCH Bifunctional polymyxin resistance protein ArnA OS=Salmonella
choleraesuis (strain SC-B67) GN=arnA PE=3 SV=1
Length = 660
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|A0KGY6|ARNA_AERHH Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=arnA PE=3 SV=1
Length = 663
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+++ EV +D GS + ++IGHP F + D++
Sbjct: 319 RVLILGVNGFIGNHLTERLLQDGGYEVYGLD---IGSS-AVDRFIGHPNFHFVEGDISIH 374
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D I L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 375 TEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYHKRIIFPST 434
Query: 148 SEVYGDPLVHPQDES 162
SEVYG H DE
Sbjct: 435 SEVYGMCDDHSFDED 449
>sp|O52325|ARNA_SALTY Bifunctional polymyxin resistance protein ArnA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=arnA PE=2 SV=1
Length = 660
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|C0Q069|ARNA_SALPC Bifunctional polymyxin resistance protein ArnA OS=Salmonella
paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1
Length = 660
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 14 SKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73
++PP T R +R+L+ G GFIG+HL ++L+ E EV +D GS +
Sbjct: 305 NRPPATSGKRR--------IRVLILGVNGFIGNHLTERLLNEENYEVYGMD---IGS-NA 352
Query: 74 LRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIG 127
+ +++ HPRF + D++ E + + D + L A+PI Y NP++ + +
Sbjct: 353 ISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 128 TLNMLGLAKRVGARILLTSTSEVYG 152
L ++ + R++ STSEVYG
Sbjct: 413 NLRIIRYCVKYRKRVVFPSTSEVYG 437
>sp|P24325|GALE_HAEIN UDP-glucose 4-epimerase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=galE PE=3 SV=2
Length = 338
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDV 90
M ILVTGGAG+IGSH V +L+ N EV+V+DN S +L K I + D+
Sbjct: 1 MAILVTGGAGYIGSHTVVELL-NVGKEVVVLDNLCNSSPKSLERVKQITGKEAKFYEGDI 59
Query: 91 TEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 142
+ L+ E++ + H A + P + NV GTL ++ K+ G
Sbjct: 60 LDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWNF 119
Query: 143 LLTSTSEVYGDPLVHP--QDESYWGNVNPIGMFSFVLK 178
+ +S++ VYGDP + P +D G NP G ++++
Sbjct: 120 VFSSSATVYGDPKIIPITEDCEVGGTTNPYGTSKYMVE 157
>sp|A0QSK6|RMLB_MYCS2 dTDP-glucose 4,6-dehydratase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlB PE=1 SV=1
Length = 331
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 33 MRILVTGGAGFIGSHLVD-KLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDV 90
MR+LVTGGAGFIG++ V L E + + V+D + GS+++L R L++ D+
Sbjct: 1 MRLLVTGGAGFIGANFVHLALREARTSSITVLDALTYAGSRESLAPVAD--RIRLVQGDI 58
Query: 91 TEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 145
T+ L+ E D + H A +P + +NV+GT +L +R R+
Sbjct: 59 TDAALVGDLVAESDAVVHFAAETHVDNALADPEPFLHSNVVGTYTILEAVRRHNVRLHHV 118
Query: 146 STSEVYGD 153
ST EVYGD
Sbjct: 119 STDEVYGD 126
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD-VT 91
MR LVTG AGFIGS LVD+L+ + + V+ +DN+ TG NL + + D VT
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLA-DGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVT 59
Query: 92 EPLLIEVDQ-----IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
L ++Q ++HLA +P NVIGT+ + A++ G R ++ +
Sbjct: 60 ADLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHT 119
Query: 147 TS--EVYGDPLVHPQDES 162
+S +YG P +P E+
Sbjct: 120 SSGGSIYGTPPEYPTPET 137
>sp|B4ETL7|ARNA_PROMH Bifunctional polymyxin resistance protein ArnA OS=Proteus mirabilis
(strain HI4320) GN=arnA PE=3 SV=1
Length = 660
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 10/129 (7%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
+ R+L+ G GFIG+HL ++L+++ ++ +D GS + ++IG+PRF I D
Sbjct: 313 KRRQRVLILGVNGFIGNHLTERLLKDGNYDIYGMD---IGSS-AIERFIGNPRFHFIEGD 368
Query: 90 VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
V+ E + + D I L A+PI Y NP++ + + L ++ + RI+
Sbjct: 369 VSIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRII 428
Query: 144 LTSTSEVYG 152
STSEVYG
Sbjct: 429 FPSTSEVYG 437
>sp|A4WAM3|ARNA_ENT38 Bifunctional polymyxin resistance protein ArnA OS=Enterobacter sp.
(strain 638) GN=arnA PE=3 SV=1
Length = 660
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 10/129 (7%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
+ R+L+ G GFIG+HL ++L++++ EV +D GS D + ++IG+ RF + D
Sbjct: 313 KRRTRVLILGVNGFIGNHLTERLLQDDNFEVYGLD---IGS-DAISRFIGNSRFHFVEGD 368
Query: 90 VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
++ E + + D + L A+PI Y NP++ + + L ++ + RI+
Sbjct: 369 ISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYQKRII 428
Query: 144 LTSTSEVYG 152
STSEVYG
Sbjct: 429 FPSTSEVYG 437
>sp|Q83QT8|ARNA_SHIFL Bifunctional polymyxin resistance protein ArnA OS=Shigella flexneri
GN=arnA PE=3 SV=2
Length = 660
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
+ R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D
Sbjct: 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 368
Query: 90 VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
++ E + + D + L A+PI Y NP++ + + L ++ + RI+
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 428
Query: 144 LTSTSEVYG 152
STSEVYG
Sbjct: 429 FPSTSEVYG 437
>sp|Q3YZV1|ARNA_SHISS Bifunctional polymyxin resistance protein ArnA OS=Shigella sonnei
(strain Ss046) GN=arnA PE=3 SV=1
Length = 660
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
+ R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D
Sbjct: 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 368
Query: 90 VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
++ E + + D + L A+PI Y NP++ + + L ++ + RI+
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 428
Query: 144 LTSTSEVYG 152
STSEVYG
Sbjct: 429 FPSTSEVYG 437
>sp|Q0T2M8|ARNA_SHIF8 Bifunctional polymyxin resistance protein ArnA OS=Shigella flexneri
serotype 5b (strain 8401) GN=arnA PE=3 SV=1
Length = 660
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
+ R+L+ G GFIG+HL ++L+ + EV +D GS D + +++ HP F + D
Sbjct: 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 368
Query: 90 VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
++ E + + D + L A+PI Y NP++ + + L ++ + RI+
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 428
Query: 144 LTSTSEVYG 152
STSEVYG
Sbjct: 429 FPSTSEVYG 437
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,918,072
Number of Sequences: 539616
Number of extensions: 3367573
Number of successful extensions: 9920
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 9361
Number of HSP's gapped (non-prelim): 477
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)