Query 029656
Match_columns 190
No_of_seqs 135 out of 1331
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 18:21:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029656.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2276-2280//hhsearch_pdb/029656hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b69_A UDP-glucuronate decarbo 1.0 1 1 157.4 18.1 169 17-189 12-180 (343)
2 3ruf_A WBGU; rossmann fold, UD 1.0 1 1 153.6 15.1 152 28-188 21-184 (351)
3 4egb_A DTDP-glucose 4,6-dehydr 1.0 1 1 150.7 15.8 152 29-189 21-184 (346)
4 3enk_A UDP-glucose 4-epimerase 1.0 1 1 147.5 15.0 151 30-189 3-163 (341)
5 3slg_A PBGP3 protein; structur 1.0 1 1 147.1 12.4 153 30-189 22-182 (372)
6 3vps_A TUNA, NAD-dependent epi 1.0 1 1 146.2 10.3 143 31-188 6-152 (321)
7 3sxp_A ADP-L-glycero-D-mannohe 1.0 1 1 144.4 17.4 147 30-189 8-171 (362)
8 1sb8_A WBPP; epimerase, 4-epim 1.0 1 1 143.6 14.7 151 30-189 25-187 (352)
9 1ek6_A UDP-galactose 4-epimera 1.0 1 1 143.5 14.5 150 31-189 1-167 (348)
10 2z1m_A GDP-D-mannose dehydrata 1.0 1 1 143.5 15.2 149 31-188 2-160 (345)
No 1
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=1.00 E-value=1 Score=157.44 Aligned_cols=169 Identities=63% Similarity=0.981 Sum_probs=133.3
Q ss_pred CCCCCCHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 99999010000002798799975655577999999996099859998178889923454341599659975556663457
Q 029656 17 PPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI 96 (190)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 96 (190)
++.|......-..+++|+|+||||+|+||++++++|++. |+.|++++|........+..+.....+.++.+|+.+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 90 (343)
T 2b69_A 12 SGRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYI 90 (343)
T ss_dssp ---------------CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCC
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHC
T ss_conf 643256655554457997999868638999999999978-7979999678744234456533678438996766770024
Q ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 86789981688788521258056899877999999999987399099995660217999898888886678978865200
Q 029656 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFV 176 (190)
Q Consensus 97 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y 176 (190)
++|+|||+|+.........++...+++|+.++.++++++++.++++|++||.++|+.....+++|+.|...++..+...|
T Consensus 91 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y 170 (343)
T 2b69_A 91 EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACY 170 (343)
T ss_dssp CCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHH
T ss_pred CCCEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 78889989513670656429799999999999999999998599599978678749899988765323567879999866
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 3466888865314
Q 029656 177 LKDGIMKLIGELG 189 (190)
Q Consensus 177 ~~~~~sK~~~E~~ 189 (190)
+.+|+.+|+.
T Consensus 171 ---~~sK~~~E~~ 180 (343)
T 2b69_A 171 ---DEGKRVAETM 180 (343)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
T ss_conf ---9999999999
No 2
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=1.00 E-value=1 Score=153.61 Aligned_cols=152 Identities=33% Similarity=0.423 Sum_probs=126.1
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCC------CCEEEEECCCCCCC-----CC
Q ss_conf 00279879997565557799999999609985999817888992345434159------96599755566634-----57
Q 029656 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH------PRFELIRHDVTEPL-----LI 96 (190)
Q Consensus 28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~-----~~ 96 (190)
..+++|+|+||||+|+||+++++.|+++ |++|++++|+.......+..+... .++.++.+|+.+.+ +.
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKL-NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK 99 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHC
T ss_conf 7888984999899847889999999978-898999957888732223666521112467743899845889999998756
Q ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86789981688788521258056899877999999999987399-09999566021799989888888667897886520
Q 029656 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSF 175 (190)
Q Consensus 97 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~ 175 (190)
++|+|||+|+.........++...+.+|+.++.++++++++.++ ++|++||.++|+.....+++|+ .+..+.+.
T Consensus 100 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~ 174 (351)
T 3ruf_A 100 GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEE-----NIGNPLSP 174 (351)
T ss_dssp TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSH
T ss_pred CCCEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCCCC-----CCCCCCCH
T ss_conf 9999998985677212445789999999999999999999749987999714776199988987667-----78899982
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0346688886531
Q 029656 176 VLKDGIMKLIGEL 188 (190)
Q Consensus 176 y~~~~~sK~~~E~ 188 (190)
| +.+|+.+|+
T Consensus 175 Y---~~sK~~~E~ 184 (351)
T 3ruf_A 175 Y---AVTKYVNEI 184 (351)
T ss_dssp H---HHHHHHHHH
T ss_pred H---HHHHHHHHH
T ss_conf 6---999999999
No 3
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=1.00 E-value=1 Score=150.72 Aligned_cols=152 Identities=30% Similarity=0.440 Sum_probs=121.2
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC--CEEEEECCCC-CCCHHHHHHHHCCCCEEEEECCCCCCCCC-------CC
Q ss_conf 02798799975655577999999996099--8599981788-89923454341599659975556663457-------86
Q 029656 29 FQSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EV 98 (190)
Q Consensus 29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~--~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~ 98 (190)
..++|+|+||||+|+||+++++.|++. | +.|++.+|.. ......+..+....++.++.+|+.+.+.. ++
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 99 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQS-YETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDV 99 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHH-CTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 567986999888637899999999964-8996799973566566166666521488717998578899999998754488
Q ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCC-CCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 789981688788521258056899877999999999987399-09999566021799-9898888886678978865200
Q 029656 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGMFSFV 176 (190)
Q Consensus 99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~-~~~~~~E~~~~~~~~~~~~~~y 176 (190)
|+|||+|+......+..++...+++|+.++.++++++++.+. ++|++||.++|+.. ...+++|+ .+..+...|
T Consensus 100 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~-----~~~~p~~~Y 174 (346)
T 4egb_A 100 QVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-----TPLAPNSPY 174 (346)
T ss_dssp CEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT-----SCCCCCSHH
T ss_pred CEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCCC-----CCCCCCCHH
T ss_conf 799988846563435529899999999999999999986599889996866875889867886888-----788999834
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 3466888865314
Q 029656 177 LKDGIMKLIGELG 189 (190)
Q Consensus 177 ~~~~~sK~~~E~~ 189 (190)
+.+|+.+|+.
T Consensus 175 ---~~sK~~~E~~ 184 (346)
T 4egb_A 175 ---SSSKASADMI 184 (346)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
T ss_conf ---9999999999
No 4
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=1.00 E-value=1 Score=147.48 Aligned_cols=151 Identities=26% Similarity=0.397 Sum_probs=122.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC--CCCEEEEECCCCCCCCC-------CCCE
Q ss_conf 27987999756555779999999960998599981788899234543415--99659975556663457-------8678
Q 029656 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLLI-------EVDQ 100 (190)
Q Consensus 30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~-------~~d~ 100 (190)
.++|+|+||||+|+||+++++.|+++ |++|++++|+..........+.. ...+.++.+|+.+.+.. ++|+
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 3 STKGTILVTGGAGYIGSHTAVELLAH-GYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp CSSCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCE
T ss_conf 98858999667768999999999988-99189995687620778999986438883389800689999999986069839
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9981688788521258056899877999999999987399-099995660217999898888886678978865200346
Q 029656 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKD 179 (190)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~ 179 (190)
|||+|+..........+.+.++.|+.++.++++++++.+. ++|++||.++|+.....+++|+ .+..+.+.|
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~Y--- 153 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDET-----FPLSATNPY--- 153 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTT-----SCCBCSSHH---
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCC-----CCCCCCCHH---
T ss_conf 997731256673213869999989999999999998479987999814537658888887877-----888988755---
Q ss_pred HHHHHHHHHC
Q ss_conf 6888865314
Q 029656 180 GIMKLIGELG 189 (190)
Q Consensus 180 ~~sK~~~E~~ 189 (190)
+.+|+.+|+.
T Consensus 154 ~~sK~~~e~~ 163 (341)
T 3enk_A 154 GQTKLMAEQI 163 (341)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 5
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=1.00 E-value=1 Score=147.11 Aligned_cols=153 Identities=25% Similarity=0.315 Sum_probs=120.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCC-CCCC-----CCCCEEEE
Q ss_conf 27987999756555779999999960998599981788899234543415996599755566-6345-----78678998
Q 029656 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EPLL-----IEVDQIYH 103 (190)
Q Consensus 30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~-----~~~d~vi~ 103 (190)
+++|+|+||||+|+||+++++.|+++++++|++++|+....... ....++.++.+|+. +... .++|+|||
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~----~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih 97 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL----VKHERMHFFEGDITINKEWVEYHVKKCDVILP 97 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG----GGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH----CCCCCEEEEECCCCCCHHHHHHHHCCCCEEEE
T ss_conf 47987999789875999999999957897799995773555541----35897599957257888999987506999998
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCC-CCCC-CCCCCHHHHHH
Q ss_conf 168878852125805689987799999999998739909999566021799989888888667-8978-86520034668
Q 029656 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GMFSFVLKDGI 181 (190)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~~~~~~~E~~~~~-~~~~-~~~~~y~~~~~ 181 (190)
+|+...+.....++.+.+++|+.++.++++++++.+.++|++||.++|+.....++.|+++.. ..|. .+.+.| +.
T Consensus 98 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y---~~ 174 (372)
T 3slg_A 98 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIY---AC 174 (372)
T ss_dssp CBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHH---HH
T ss_pred CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH---HH
T ss_conf 675446777766989999998799999999999869909996728985778787878555655567777888737---88
Q ss_pred HHHHHHHC
Q ss_conf 88865314
Q 029656 182 MKLIGELG 189 (190)
Q Consensus 182 sK~~~E~~ 189 (190)
+|+.+|+.
T Consensus 175 sK~~~E~~ 182 (372)
T 3slg_A 175 SKQLMDRV 182 (372)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 6
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=1.00 E-value=1 Score=146.24 Aligned_cols=143 Identities=34% Similarity=0.485 Sum_probs=113.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC---CCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf 79879997565557799999999609985999817888---992345434159965997555666345786789981688
Q 029656 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT---GSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (190)
Q Consensus 31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~ 107 (190)
++|+|+||||+|+||+++++.|++. |++|++++|+.. .....+..+.....+.++.+|+. ++|+|||+|+.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~d~vi~~a~~ 79 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVAS-GEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----DVRLVYHLASH 79 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----TEEEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCHHHHHHHCCCCCEEEEECCCC-----CCCEEEECCCC
T ss_conf 9996999789876899999999978-79799982687434452555233204787069867646-----68889999845
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 788521258056899877999999999987399-0999956602179998988888866789788652003466888865
Q 029656 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIG 186 (190)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~~~sK~~~ 186 (190)
........++...++ |+.++.++++++++.++ ++|++||.++|+.....+++|+ ++..+.+.| +.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~-----~~~~p~~~Y---~~sK~~~ 150 (321)
T 3vps_A 80 KSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED-----SPLSPRSPY---AASKVGL 150 (321)
T ss_dssp CCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHH---HHHHHHH
T ss_pred CCHHHHHHCHHHHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCCC-----CCCCCCCHH---HHHHHHH
T ss_conf 776777769999999-9999999999999829985999647899698999888899-----998998755---8999999
Q ss_pred HH
Q ss_conf 31
Q 029656 187 EL 188 (190)
Q Consensus 187 E~ 188 (190)
|+
T Consensus 151 E~ 152 (321)
T 3vps_A 151 EM 152 (321)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 7
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=144.38 Aligned_cols=147 Identities=29% Similarity=0.414 Sum_probs=117.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCH---------HHHHHHHCCCCEEEEECCCCCCC----
Q ss_conf 2798799975655577999999996--09985999817888992---------34543415996599755566634----
Q 029656 30 QSNMRILVTGGAGFIGSHLVDKLME--NEKNEVIVVDNYFTGSK---------DNLRKWIGHPRFELIRHDVTEPL---- 94 (190)
Q Consensus 30 ~~~~~vlItGa~G~iG~~l~~~L~~--~~~~~v~~~~r~~~~~~---------~~~~~~~~~~~~~~~~~D~~~~~---- 94 (190)
+++|+|+||||+|+||+++++.|++ . |++|++++|...... .....+ ....+.++.+|+.+..
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHP-KAKVVVLDKFRSNTLFSNNRPSSLGHFKNL-IGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCT-TSEEEEEECCCCC-------CCCCCCGGGG-TTCCSEEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHC-CCCCCEEEECCCCCHHHHHH
T ss_conf 1799899979987999999999996389-986999977874221111001102235532-44576499888799999998
Q ss_pred --CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --578678998168878852125805689987799999999998739909999566021799989888888667897886
Q 029656 95 --LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGM 172 (190)
Q Consensus 95 --~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~ 172 (190)
..++|+|||+|+.... +..+++..+++|+.++.++++++++.+.+||++||.++|+.... +++|+ .+..+
T Consensus 86 ~~~~~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~-~~~E~-----~~~~p 157 (362)
T 3sxp_A 86 LEKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKA-PNVVG-----KNESP 157 (362)
T ss_dssp HTTSCCSEEEECCCCCGG--GCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCS-SBCTT-----SCCCC
T ss_pred HHCCCCCEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCC-CCCCC-----CCCCC
T ss_conf 625699899987855772--20188999999999999999999970992999683898589999-98777-----88898
Q ss_pred CCCHHHHHHHHHHHHHC
Q ss_conf 52003466888865314
Q 029656 173 FSFVLKDGIMKLIGELG 189 (190)
Q Consensus 173 ~~~y~~~~~sK~~~E~~ 189 (190)
.+.| +.+|+.+|+.
T Consensus 158 ~~~Y---~~sK~~~E~~ 171 (362)
T 3sxp_A 158 ENVY---GFSKLCMDEF 171 (362)
T ss_dssp SSHH---HHHHHHHHHH
T ss_pred CCHH---HHHHHHHHHH
T ss_conf 9835---9999999999
No 8
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=1.00 E-value=1 Score=143.56 Aligned_cols=151 Identities=30% Similarity=0.365 Sum_probs=119.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC------CCCEEEEECCCCCCC-----CCCC
Q ss_conf 27987999756555779999999960998599981788899234543415------996599755566634-----5786
Q 029656 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG------HPRFELIRHDVTEPL-----LIEV 98 (190)
Q Consensus 30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~-----~~~~ 98 (190)
+++|+|+||||+|+||+++++.|++. |++|++++|+.......+..+.. ..++.++.+|+.+.. +.++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCC
T ss_conf 66886999877858999999999978-89799996888663656777763102356886489987789889999986379
Q ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 789981688788521258056899877999999999987399-0999956602179998988888866789788652003
Q 029656 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVL 177 (190)
Q Consensus 99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~ 177 (190)
|+|||+|+......+..+++..+++|+.++.++++++.+.+. ++|++||.++|+.....+++|+ .+..+...|
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~-----~~~~~~~~Y- 177 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPY- 177 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHH-
T ss_pred CEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC-----CCCCCCCHH-
T ss_conf 99998973557065664989999999999999999999829997999365776199988997877-----778999826-
Q ss_pred HHHHHHHHHHHC
Q ss_conf 466888865314
Q 029656 178 KDGIMKLIGELG 189 (190)
Q Consensus 178 ~~~~sK~~~E~~ 189 (190)
+.+|+.+|+.
T Consensus 178 --~~sK~~~e~~ 187 (352)
T 1sb8_A 178 --AVTKYVNELY 187 (352)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
T ss_conf --9999999999
No 9
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=1.00 E-value=1 Score=143.55 Aligned_cols=150 Identities=29% Similarity=0.406 Sum_probs=116.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC------CHHHHHHHH--CCCCEEEEECCCCCCCC-----C-
Q ss_conf 798799975655577999999996099859998178889------923454341--59965997555666345-----7-
Q 029656 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG------SKDNLRKWI--GHPRFELIRHDVTEPLL-----I- 96 (190)
Q Consensus 31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~------~~~~~~~~~--~~~~~~~~~~D~~~~~~-----~- 96 (190)
|+|+|+||||+|+||+++++.|++. |++|++++|.... ....+..+. ...++.++.+|+.+... .
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHT-TCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 9977999899778999999999978-997999946775434445437779999840488527997887999999999986
Q ss_pred -CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf -86789981688788521258056899877999999999987399-09999566021799989888888667897886-5
Q 029656 97 -EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGM-F 173 (190)
Q Consensus 97 -~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~-~ 173 (190)
++|+|||+|+......+..+++..+++|+.++.++++++++.+. ++|++||.++|+.....+++|+. +..+ .
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~-----~~~p~~ 154 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCT 154 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCS
T ss_pred CCCCEEEECCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCCCC-----CCCCCC
T ss_conf 699899989877675301226688999888899999999998099979998968873899888867788-----889888
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 2003466888865314
Q 029656 174 SFVLKDGIMKLIGELG 189 (190)
Q Consensus 174 ~~y~~~~~sK~~~E~~ 189 (190)
..| +.+|+.+|+.
T Consensus 155 ~~Y---~~sK~~~e~~ 167 (348)
T 1ek6_A 155 NPY---GKSKFFIEEM 167 (348)
T ss_dssp SHH---HHHHHHHHHH
T ss_pred CCH---HHHHHHHHHH
T ss_conf 811---8999999999
No 10
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=1.00 E-value=1 Score=143.48 Aligned_cols=149 Identities=28% Similarity=0.293 Sum_probs=117.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHCCCCEEEEECCCCCCCCC-------CCCEEE
Q ss_conf 79879997565557799999999609985999817888992-3454341599659975556663457-------867899
Q 029656 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIY 102 (190)
Q Consensus 31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi 102 (190)
++|+|+||||+|+||+++++.|+++ |++|++++|+..... ..+..+....++.++.+|+.+.+.. ++|+||
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 80 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEK-GYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY 80 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 9988999899871899999999978-998999977875434000765155676269988888999999999863999999
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 8168878852125805689987799999999998739--90999956602179998988888866789788652003466
Q 029656 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDG 180 (190)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~~ 180 (190)
|+|+......+..+++..+++|+.++.++++++.+.+ .++|++||.++|+.....+++|+ .+..+...| +
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~~~~~Y---~ 152 (345)
T 2z1m_A 81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPY---A 152 (345)
T ss_dssp ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHH---H
T ss_pred ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCCCC-----CCCCCCCHH---H
T ss_conf 98887565555558999999889999999999997599836999806665298888887756-----778998865---8
Q ss_pred HHHHHHHH
Q ss_conf 88886531
Q 029656 181 IMKLIGEL 188 (190)
Q Consensus 181 ~sK~~~E~ 188 (190)
.+|+.+|.
T Consensus 153 ~sK~~~e~ 160 (345)
T 2z1m_A 153 VAKLFGHW 160 (345)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 88999999
Done!