Query 029658
Match_columns 190
No_of_seqs 107 out of 238
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 16:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1688 Golgi proteins involve 100.0 3.9E-90 8.5E-95 572.4 16.2 172 9-180 14-186 (188)
2 PF03248 Rer1: Rer1 family; I 100.0 3.9E-88 8.4E-93 561.0 18.3 168 12-179 2-176 (176)
3 COG5249 RER1 Golgi protein inv 100.0 1.6E-75 3.4E-80 477.5 14.5 168 11-178 10-179 (180)
4 PF09973 DUF2208: Predicted me 86.1 1.6 3.4E-05 38.5 5.2 43 116-162 7-49 (233)
5 PF13260 DUF4051: Protein of u 79.7 2.4 5.3E-05 29.6 3.1 22 143-164 4-25 (54)
6 CHL00161 secY preprotein trans 56.5 30 0.00064 32.5 6.0 110 56-170 295-416 (417)
7 PF06703 SPC25: Microsomal sig 41.2 51 0.0011 26.5 4.4 40 117-156 33-77 (162)
8 PF12273 RCR: Chitin synthesis 32.7 23 0.00049 27.6 1.1 13 37-49 1-13 (130)
9 TIGR03097 PEP_O_lig_1 probable 31.5 1E+02 0.0022 28.1 5.3 60 104-163 68-130 (402)
10 PF12273 RCR: Chitin synthesis 30.6 69 0.0015 24.9 3.5 18 138-155 4-21 (130)
11 KOG3827 Inward rectifier K+ ch 29.5 56 0.0012 31.3 3.2 48 14-66 45-92 (400)
12 PRK12907 secY preprotein trans 26.7 98 0.0021 29.4 4.4 110 56-170 309-430 (434)
13 PRK14475 F0F1 ATP synthase sub 26.1 93 0.002 25.2 3.6 13 128-141 3-15 (167)
14 COG0817 RuvC Holliday junction 24.8 42 0.0009 28.3 1.4 35 130-164 91-125 (160)
15 PF12387 Peptidase_C74: Pestiv 24.5 1.8E+02 0.004 25.3 5.2 52 92-159 25-76 (200)
16 PHA00736 hypothetical protein 23.0 55 0.0012 24.3 1.6 27 120-146 38-66 (79)
17 TIGR02920 acc_sec_Y2 accessory 22.0 2.8E+02 0.0061 25.9 6.4 110 55-169 273-394 (395)
18 PRK06531 yajC preprotein trans 21.7 67 0.0015 25.4 1.9 30 134-165 2-31 (113)
19 KOG2887 Membrane protein invol 21.4 3E+02 0.0065 23.6 5.9 25 138-162 80-106 (175)
20 PRK05886 yajC preprotein trans 21.3 89 0.0019 24.6 2.5 28 137-165 6-33 (109)
21 PF07330 DUF1467: Protein of u 21.2 1.8E+02 0.004 21.9 4.1 36 85-127 28-63 (85)
22 PF14800 DUF4481: Domain of un 21.1 98 0.0021 28.7 3.1 44 76-122 15-68 (308)
No 1
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-90 Score=572.37 Aligned_cols=172 Identities=61% Similarity=1.150 Sum_probs=168.5
Q ss_pred chhHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcccEEEehhHHHHHHHHHHHhhcCCCCCchhh-h
Q 029658 9 AASVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELE-A 87 (190)
Q Consensus 9 ~~~~~~~~~~~~~~yq~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~-~ 87 (190)
++|+.++.+++++.||+||||+|||+..||+++++++++|++||+..|||||||||||||+||+||+|||||+|||+| +
T Consensus 14 a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtPk~Dp~~~~~ 93 (188)
T KOG1688|consen 14 ASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTPKVDPELQDA 93 (188)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCchhhcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred ccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCcc
Q 029658 88 LNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYV 167 (190)
Q Consensus 88 ~dg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy~Yv 167 (190)
+||+.||+++|||||||||||||||||+++|||+++|+.||||++||+|||||||++||++||++||||||+|||||||+
T Consensus 94 ~dg~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~lf~ltmrRqI~HMiKyrY~ 173 (188)
T KOG1688|consen 94 DDGPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVLFFLTMRRQIAHMIKYRYI 173 (188)
T ss_pred cCCCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCC
Q 029658 168 PFNIGKPRYGKKS 180 (190)
Q Consensus 168 Pf~~gK~~y~~~~ 180 (190)
||++||++|++++
T Consensus 174 Pf~~gK~~~~~~~ 186 (188)
T KOG1688|consen 174 PFDIGKKKYGSHS 186 (188)
T ss_pred ccccCchhhhccc
Confidence 9999999998764
No 2
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.9e-88 Score=560.99 Aligned_cols=168 Identities=61% Similarity=1.164 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcccEEEehhHHHHHHHHHHHhhcCCCCCchhhh----
Q 029658 12 VMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELEA---- 87 (190)
Q Consensus 12 ~~~~~~~~~~~yq~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~---- 87 (190)
++++.++++++||++|||||||++.||+++++|+++|++||+..|||||||||||||+||+||+||||++||++++
T Consensus 2 ~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~~ 81 (176)
T PF03248_consen 2 VSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEED 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCcccccccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred -ccCCCCCC--CCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029658 88 -LNTASLPT--KGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKY 164 (190)
Q Consensus 88 -~dg~~lp~--~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy 164 (190)
|||+.||+ +++||||||+|||||||||++||||+++|++||||++||||||||||++|||+||++||||||+|||||
T Consensus 82 ~~~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~~tm~~qI~hMiKy 161 (176)
T PF03248_consen 82 EEEGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFVLTMKRQIKHMIKY 161 (176)
T ss_pred ccccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCccccCCC
Q 029658 165 KYVPFNIGKPRYGKK 179 (190)
Q Consensus 165 ~YvPf~~gK~~y~~~ 179 (190)
||+|||+||++|++|
T Consensus 162 ~Y~Pf~~gK~~y~~~ 176 (176)
T PF03248_consen 162 RYVPFDFGKKKYGRK 176 (176)
T ss_pred CCCCccccchhccCC
Confidence 999999999999875
No 3
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-75 Score=477.51 Aligned_cols=168 Identities=42% Similarity=0.864 Sum_probs=158.3
Q ss_pred hHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcccEEEehhHHHHHHHHHHHhhcCCCCCchhhh-cc
Q 029658 11 SVMKWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLGIYILNLLIGFLSPSVDPELEA-LN 89 (190)
Q Consensus 11 ~~~~~~~~~~~~yq~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~-~d 89 (190)
.+.+..+.+++.||+||||.+||+.+||+.+++|+.+|++||...+|||+|||+||||+||+|++|||||+||+.|+ ||
T Consensus 10 n~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~ 89 (180)
T COG5249 10 NLITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIED 89 (180)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhcc
Confidence 35566888999999999999999999999999999999999999999999999999999999999999999999985 44
Q ss_pred CCCCC-CCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCccc
Q 029658 90 TASLP-TKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKYKYVP 168 (190)
Q Consensus 90 g~~lp-~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy~YvP 168 (190)
+..+| ++.|+|||||||||||||||+++||||++|++.|+|++||||||||||++|||+|+.+|||||||||+||||+|
T Consensus 90 d~eieeg~kd~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~rRqIqHM~KYrY~P 169 (180)
T COG5249 90 DDEIEEGEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQIQHMKKYRYNP 169 (180)
T ss_pred ccccccccccchhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44444 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCC
Q 029658 169 FNIGKPRYGK 178 (190)
Q Consensus 169 f~~gK~~y~~ 178 (190)
|++||++|++
T Consensus 170 fdigKkky~s 179 (180)
T COG5249 170 FDIGKKKYKS 179 (180)
T ss_pred hhhhhhhhcc
Confidence 9999999975
No 4
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=86.10 E-value=1.6 Score=38.46 Aligned_cols=43 Identities=19% Similarity=0.423 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 029658 116 ALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQILHMI 162 (190)
Q Consensus 116 ~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMi 162 (190)
+.+-.+++|++++|++. -||++.+.||++.++++|.-.++++-
T Consensus 7 sq~~il~fa~Vla~~p~----y~~~~filYfiv~~~i~~~~~~Rs~r 49 (233)
T PF09973_consen 7 SQVSILLFAAVLAFFPQ----YYFEVFILYFIVFFGIMIVMGIRSYR 49 (233)
T ss_pred HHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 45566788889887753 36899999999999999998888876
No 5
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=79.71 E-value=2.4 Score=29.57 Aligned_cols=22 Identities=41% Similarity=0.783 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 029658 143 LCYWIFLFVLTMKRQILHMIKY 164 (190)
Q Consensus 143 l~Yfi~Lf~ltm~rqI~HMiKy 164 (190)
.-|||+|-++..-..+-||.+|
T Consensus 4 awywivli~lv~~gy~~hmkry 25 (54)
T PF13260_consen 4 AWYWIVLIVLVVVGYFCHMKRY 25 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999987
No 6
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=56.51 E-value=30 Score=32.47 Aligned_cols=110 Identities=17% Similarity=0.260 Sum_probs=59.3
Q ss_pred ccEEEehhHHHHHHHHHHHhhcCCCCCchhhh----ccCCCCCCCCCC-CCCCcccC-CchhHHHHHHHHHHHHHHHHHh
Q 029658 56 QGFYIVTYGLGIYILNLLIGFLSPSVDPELEA----LNTASLPTKGSD-EFKPFVRR-LPEFKFWYALTKAFVVAFFLTF 129 (190)
Q Consensus 56 ~g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~----~dg~~lp~~~~~-EFrPFiRR-LPEFkFW~~~tra~~ia~~~Tf 129 (190)
+.+|+++|.+-+.+++-|-.+++ +||+... +.|...|.-+.. +=.-+++| +|-..+|=++ -..++|.++.+
T Consensus 295 ~~~y~~~y~~lii~Fs~f~~~i~--~~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~-~l~~la~~p~l 371 (417)
T CHL00161 295 KILYLVLYFVLILFFSYFYSTIV--LNPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGAL-FLAFIALLPNL 371 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHH
Confidence 45688999999999999988887 8998652 456666654432 11222222 2333333222 23333444444
Q ss_pred hc-cccccchh---H--HHHHHHHHHHHHHHHHHHHHHhhhCcccCC
Q 029658 130 FS-VLDVPVFW---P--ILLCYWIFLFVLTMKRQILHMIKYKYVPFN 170 (190)
Q Consensus 130 f~-~fDiPVfW---P--iLl~Yfi~Lf~ltm~rqI~HMiKy~YvPf~ 170 (190)
++ .++++++. + +|++- ..-.=|+++-=.|+.+.+|-+|.
T Consensus 372 ~~~~~~~~~~~~~ggtslLI~V--gv~~~~~~qi~a~~~~~~Y~~~~ 416 (417)
T CHL00161 372 IESVLNLSVFKGLGTTSLLILV--GVAIDTSRQIQTYLISNNYENMY 416 (417)
T ss_pred HHHhcCcccccccchhhhhhhH--HHHHHHHHHHHHHHHHHhhcccc
Confidence 53 33556444 2 22222 22223444444577888887763
No 7
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=41.20 E-value=51 Score=26.46 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhcc-----ccccchhHHHHHHHHHHHHHHHHH
Q 029658 117 LTKAFVVAFFLTFFSV-----LDVPVFWPILLCYWIFLFVLTMKR 156 (190)
Q Consensus 117 ~tra~~ia~~~Tff~~-----fDiPVfWPiLl~Yfi~Lf~ltm~r 156 (190)
++-|+++|.++.+++. -+-|+-+...+.||++..++|.-.
T Consensus 33 g~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiLs~il~~~~ 77 (162)
T PF06703_consen 33 GYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFILSGILTLYS 77 (162)
T ss_pred HHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778887755 347888999999999998888744
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.66 E-value=23 Score=27.64 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHH
Q 029658 37 RWLGTLAVAAIYV 49 (190)
Q Consensus 37 RW~~~~~l~~lf~ 49 (190)
||+++++++++++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 8988888776554
No 9
>TIGR03097 PEP_O_lig_1 probable O-glycosylation ligase, exosortase system type 1-associated. These proteins are members of the O-antigen polymerase (wzy) family described by Pfam model pfam04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system, specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
Probab=31.51 E-value=1e+02 Score=28.11 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=40.0
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhhcccccc---chhHHHHHHHHHHHHHHHHHHHHHHhh
Q 029658 104 FVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVP---VFWPILLCYWIFLFVLTMKRQILHMIK 163 (190)
Q Consensus 104 FiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiP---VfWPiLl~Yfi~Lf~ltm~rqI~HMiK 163 (190)
-++.-|+.++..-..-.++++.+-+..+-...+ .+|+++++++++..+++-|++++.+..
T Consensus 68 ~~~~~~~~~~lllf~~~~~ls~l~s~~~~~s~~~~~~~~~~~l~~~~~~~l~~~~~~l~~l~~ 130 (402)
T TIGR03097 68 SIPWTPEVIFLLLLTIWMTVTTFFAFDPDVAFVQWDKVMKIFLMVLVTLMLISDRQRLHWLLW 130 (402)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345678877776555555554443333322233 568999999999888898999988764
No 10
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.65 E-value=69 Score=24.91 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 029658 138 FWPILLCYWIFLFVLTMK 155 (190)
Q Consensus 138 fWPiLl~Yfi~Lf~ltm~ 155 (190)
+|=|+++-++++++++++
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 444555555555545443
No 11
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=29.47 E-value=56 Score=31.25 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcccEEEehhHHH
Q 029658 14 KWKSDFSRKFQYYLDKSTPNTMERWLGTLAVAAIYVLRVFYVQGFYIVTYGLG 66 (190)
Q Consensus 14 ~~~~~~~~~yq~~LDk~tp~~~~RW~~~~~l~~lf~~Rv~~~~g~yiVtY~Lg 66 (190)
+..+=++..+-.++| .+.||..+++.+...+.=.++.--||+|+|+-|
T Consensus 45 ~~~rYl~DifTTlVD-----~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hG 92 (400)
T KOG3827|consen 45 KRLRYLQDIFTTLVD-----LKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHG 92 (400)
T ss_pred HHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344455566666777 677888777766544444445445777777655
No 12
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=26.70 E-value=98 Score=29.45 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=58.9
Q ss_pred ccEEEehhHHHHHHHHHHHhhcCCCCCchhhh----ccCCCCCCCCC-CCCCCcccC-CchhHHHHHHHHHHHHHHHHHh
Q 029658 56 QGFYIVTYGLGIYILNLLIGFLSPSVDPELEA----LNTASLPTKGS-DEFKPFVRR-LPEFKFWYALTKAFVVAFFLTF 129 (190)
Q Consensus 56 ~g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~----~dg~~lp~~~~-~EFrPFiRR-LPEFkFW~~~tra~~ia~~~Tf 129 (190)
+.+|.+.|++-|.+.+-|-.++. +||+... +.|...|.-+. +|=+-+++| ++...++ .+.-..++|.+.++
T Consensus 309 ~~~~~~~y~~lii~Fs~fyt~i~--~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~-Gai~L~~ia~lP~i 385 (434)
T PRK12907 309 HPIGMTLYVGLIVAFTYFYAFIQ--VNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFI-GAIFLGAISILPLV 385 (434)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 44567889888888888878775 8998652 34656665332 222223332 2222222 23333344444444
Q ss_pred h-ccccccch-----hHHHHHHHHHHHHHHHHHHHHHHhhhCcccCC
Q 029658 130 F-SVLDVPVF-----WPILLCYWIFLFVLTMKRQILHMIKYKYVPFN 170 (190)
Q Consensus 130 f-~~fDiPVf-----WPiLl~Yfi~Lf~ltm~rqI~HMiKy~YvPf~ 170 (190)
. ..+.+|.+ --+|.+ +..-.=|+++-=.|+...+|-+|-
T Consensus 386 ~~~~~~~~~~~~~gGTslLI~--VgV~ldt~~qi~s~l~~~~Y~~~~ 430 (434)
T PRK12907 386 FTKIATLPPSAQIGGTSLLII--VGVALETMKTLESQLVKRHYKGFI 430 (434)
T ss_pred HHHHhCCCcccccchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 33455532 223332 222223555555688899998873
No 13
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=26.06 E-value=93 Score=25.20 Aligned_cols=13 Identities=46% Similarity=1.007 Sum_probs=8.2
Q ss_pred HhhccccccchhHH
Q 029658 128 TFFSVLDVPVFWPI 141 (190)
Q Consensus 128 Tff~~fDiPVfWPi 141 (190)
|||+ ++.|.||-+
T Consensus 3 ~~~~-~~~~~~w~~ 15 (167)
T PRK14475 3 SFFN-LSNPEFWVG 15 (167)
T ss_pred CCCC-CCchHHHHH
Confidence 4555 557888843
No 14
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=24.75 E-value=42 Score=28.31 Aligned_cols=35 Identities=23% Similarity=0.030 Sum_probs=19.7
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029658 130 FSVLDVPVFWPILLCYWIFLFVLTMKRQILHMIKY 164 (190)
Q Consensus 130 f~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy 164 (190)
-.-+++..|-|-.+==-++=..=.=|+||+||+|.
T Consensus 91 ~~~l~v~eY~p~~VKkavvG~G~A~K~QVq~MV~~ 125 (160)
T COG0817 91 RRGLPVFEYTPNQVKKAVVGNGKADKEQVQHMVKR 125 (160)
T ss_pred HcCCChhhccHHHHHHHhhcCCcccHHHHHHHHHH
Confidence 34344555566554332222223348999999985
No 15
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=24.53 E-value=1.8e+02 Score=25.26 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 029658 92 SLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLTFFSVLDVPVFWPILLCYWIFLFVLTMKRQIL 159 (190)
Q Consensus 92 ~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~Tff~~fDiPVfWPiLl~Yfi~Lf~ltm~rqI~ 159 (190)
++|+++...+. +.+=...+||++||.+.+-+. ++.++|.++=+..-|.|.|-
T Consensus 25 lfPS~qk~~~~--------~~~~lpllra~LIsCiSS~Wq--------~~Yl~yL~ie~~Yy~H~kII 76 (200)
T PF12387_consen 25 LFPSRQKGGSC--------TGFLLPLLRAILISCISSKWQ--------CFYLLYLIIELSYYMHRKII 76 (200)
T ss_pred EccccccCCCC--------ccchHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHHHHHHH
Confidence 56776644332 223456789999999988666 68899999888888877653
No 16
>PHA00736 hypothetical protein
Probab=23.05 E-value=55 Score=24.35 Aligned_cols=27 Identities=33% Similarity=0.664 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhc-ccc-ccchhHHHHHHH
Q 029658 120 AFVVAFFLTFFS-VLD-VPVFWPILLCYW 146 (190)
Q Consensus 120 a~~ia~~~Tff~-~fD-iPVfWPiLl~Yf 146 (190)
|++..+..||-- ++| +|+||-|-+++=
T Consensus 38 aii~giastf~lmfmdflplfwgi~vifg 66 (79)
T PHA00736 38 AILVGIASTFTLMFMDFLPLFWGITVIFG 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444322 233 899999987653
No 17
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=22.04 E-value=2.8e+02 Score=25.88 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=58.2
Q ss_pred cccEEEehhHHHHHHHHHHHhhcCCCCCchhhh----ccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHHH--
Q 029658 55 VQGFYIVTYGLGIYILNLLIGFLSPSVDPELEA----LNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFLT-- 128 (190)
Q Consensus 55 ~~g~yiVtY~LgIylLnlfi~FLtP~~Dp~l~~----~dg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~T-- 128 (190)
.+-+|.+.|.+-|..++-|.+++ .+||+... +.|...|.-+.+ ++=.|-|-.--.=.++..|+.+++++.
T Consensus 273 ~~~~~~i~y~~lii~fs~fys~i--~~nP~diA~~Lkk~g~~IpGiRpG--~~T~~yL~~~i~~~t~~Gai~l~~ia~lP 348 (395)
T TIGR02920 273 SSPVGILIYLILQMLLSYFFTFV--NINPKEISKSFRKSGNYIPGIAPG--KDTQRYLNRLARRFCWFGGVFNAFQLGIP 348 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh--eECHHHHHHHHHHCCCCccCcCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999998887 78887652 456667765533 333333333333334444545444443
Q ss_pred -hhc-ccc-ccc--hhHHHHHHHHHHHHHHHHHHHH-HHhhhCcccC
Q 029658 129 -FFS-VLD-VPV--FWPILLCYWIFLFVLTMKRQIL-HMIKYKYVPF 169 (190)
Q Consensus 129 -ff~-~fD-iPV--fWPiLl~Yfi~Lf~ltm~rqI~-HMiKy~YvPf 169 (190)
+.+ .+. ..- +=|.= +.-++=..+.-.|||+ |+.+.+|-.+
T Consensus 349 ~~~~~~~~~~~~~~~ggts-llI~vgv~ldt~~qi~~~~~~~~Y~~~ 394 (395)
T TIGR02920 349 LYFALFVPHLLTEAYIPGQ-FMMITGMSFNIADEIRTILYFDRYKPL 394 (395)
T ss_pred HHHHHHhccccceeehhhh-hhhhhhhHHhHHHHHHHHHHHHhhCCC
Confidence 332 222 211 12211 1112223334455554 6677777543
No 18
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.65 E-value=67 Score=25.42 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=15.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 029658 134 DVPVFWPILLCYWIFLFVLTMKRQILHMIKYK 165 (190)
Q Consensus 134 DiPVfWPiLl~Yfi~Lf~ltm~rqI~HMiKy~ 165 (190)
|++.+.|+.+++-++ | +..|.|-|-+.+|+
T Consensus 2 ~~~~il~~vv~~~i~-y-f~iRPQkKr~Ke~~ 31 (113)
T PRK06531 2 GIPTIIMFVVMLGLI-F-FMQRQQKKQAQERQ 31 (113)
T ss_pred chHHHHHHHHHHHHH-H-heechHHHHHHHHH
Confidence 455566554443332 2 33666666655553
No 19
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.40 E-value=3e+02 Score=23.60 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHH--HHHHHHHh
Q 029658 138 FWPILLCYWIFLFVLTM--KRQILHMI 162 (190)
Q Consensus 138 fWPiLl~Yfi~Lf~ltm--~rqI~HMi 162 (190)
+|-+=-+-++.-|++-| ++|++||-
T Consensus 80 ~~TlGnll~i~sf~fLmGP~~ql~~m~ 106 (175)
T KOG2887|consen 80 LYTLGNLLAIGSFAFLMGPVSQLKHMF 106 (175)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 46555566677777776 89999995
No 20
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.30 E-value=89 Score=24.62 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 029658 137 VFWPILLCYWIFLFVLTMKRQILHMIKYK 165 (190)
Q Consensus 137 VfWPiLl~Yfi~Lf~ltm~rqI~HMiKy~ 165 (190)
.+.|++++..+ ++++.+|.|-|-+.+++
T Consensus 6 ~ll~lv~i~~i-~yF~~iRPQkKr~K~~~ 33 (109)
T PRK05886 6 LFLPFLLIMGG-FMYFASRRQRKAMQATI 33 (109)
T ss_pred HHHHHHHHHHH-HHHHHccHHHHHHHHHH
Confidence 44566655433 34444677766555543
No 21
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.16 E-value=1.8e+02 Score=21.89 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=21.6
Q ss_pred hhhccCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHHHH
Q 029658 85 LEALNTASLPTKGSDEFKPFVRRLPEFKFWYALTKAFVVAFFL 127 (190)
Q Consensus 85 l~~~dg~~lp~~~~~EFrPFiRRLPEFkFW~~~tra~~ia~~~ 127 (190)
.|+|+|+..|..+.. -| -.++.+..+..+|++|.+.
T Consensus 28 tq~E~g~vv~Gt~~s--AP-----~~~~l~rk~~~TTiiaavi 63 (85)
T PF07330_consen 28 TQDEAGEVVPGTDPS--AP-----ANPRLKRKALITTIIAAVI 63 (85)
T ss_pred ccCcCCCcCCCCCCC--CC-----CCchHHHHHHHHHHHHHHH
Confidence 345667666654432 33 3456677777788877763
No 22
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=21.08 E-value=98 Score=28.68 Aligned_cols=44 Identities=20% Similarity=0.471 Sum_probs=25.0
Q ss_pred hcCCCCCchhhh----ccCCCCCCCCCCCCCCccc-CCch-----hHHHHHHHHHHH
Q 029658 76 FLSPSVDPELEA----LNTASLPTKGSDEFKPFVR-RLPE-----FKFWYALTKAFV 122 (190)
Q Consensus 76 FLtP~~Dp~l~~----~dg~~lp~~~~~EFrPFiR-RLPE-----FkFW~~~tra~~ 122 (190)
.+||+|||++-. ..|-.+|. |||+--+. -+.+ |.+|.+|-+-++
T Consensus 15 ~~tp~F~~e~~~E~L~a~Glqlp~---e~y~~~~E~al~~p~VRRy~~yNs~~fr~~ 68 (308)
T PF14800_consen 15 WCTPSFDPELCPEELMAQGLQLPV---EDYVHLMESALLDPQVRRYTLYNSRYFRLL 68 (308)
T ss_pred eecCccChhhCHHHHHhhCccccH---HHHHHHHHHhccchhheeeeeecchHHHHH
Confidence 679999999853 25766776 34432211 1222 667766655443
Done!