BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029659
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 73/101 (72%)
Query: 24 AAVYKVGDSAGWTTIGNIDYKQWAATKTFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTS 83
A V+KVGDS GWTT+ DY +WA++ F VGD + F YN +FHNV++V +++CN+S
Sbjct: 2 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 84 APLATFTTGNDSITITAKGHHFFFCGVPGHCQSGQKVDINV 124
+P A++T+G DSI + G +F CG+PGHCQ GQKV+I V
Sbjct: 62 SPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 25 AVYKVGDSAGWTTIGNIDYKQWAATKTFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTSA 84
AVY VG S GWT + + W K F+ GDI+ F YNP HNV+ V + CNT A
Sbjct: 1 AVYVVGGSGGWT----FNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 85 PLATFTTGNDSITITAKGHHFFFCGVPGHCQSGQKVDINVL 125
+T+G D I + KG +F C PGHCQSG K+ +N L
Sbjct: 57 GAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVNAL 96
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 17/112 (15%)
Query: 24 AAVYKVGDSAGWTTIGNID-YKQWAATKTFQVGDIIHFEYNPQFHNVMRV-THAMYRACN 81
+ V+ VGD+ GW+ + + Y QWAA KTF+VGD + F + HNV + T + ACN
Sbjct: 3 STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62
Query: 82 TSAPLATFTTGNDSITITAK--------GHHFFFCGVPGHCQSGQKVDINVL 125
F ++ + T+ G H+F C V HC +GQK+ INV+
Sbjct: 63 -------FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVV 107
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 27 YKVGDSAGWTTIGNID-YKQWAATKTFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTSAP 85
Y VG W + Y WA KTF+VGD + F++ H+V VT + C P
Sbjct: 4 YDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENP 63
Query: 86 LATFTTGNDSITITAKGHHFFFCGVPGHCQSGQKVDINVL 125
++ TT I + G ++ C V HC+ GQK+ INV+
Sbjct: 64 ISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 47 AATKTFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTSAPLATFTTGNDSITITAKGHHFF 106
A K+F+ GD++ F+Y HNV+ V Y +C+ T+++G D I +T +G ++F
Sbjct: 14 ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQNYF 72
Query: 107 FCGVPGHCQSGQKVDIN 123
C PGHC G K+ IN
Sbjct: 73 ICSFPGHCGGGMKIAIN 89
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 24 AAVYKVGDSAGWTTIGNIDY 43
+YK GD A W + GNI+Y
Sbjct: 406 EKLYKTGDQARWLSDGNIEY 425
>pdb|3O0R|B Chain B, Crystal Structure Of Nitric Oxide Reductase From
Pseudomonas Aeruginosa In Complex With Antibody Fragment
Length = 465
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 98 ITAKGHHFFFCGVPGHC 114
I GHH+F+ GVPG+
Sbjct: 253 IIGTGHHYFWIGVPGYW 269
>pdb|1OLA|A Chain A, The Structural Basis Of Multispecificity In The
Oligopeptide-binding Protein Oppa
pdb|2OLB|A Chain A, Oligopeptide Binding Protein (Oppa) Complexed With Tri-
Lysine
pdb|1OLC|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With
Lys-Lys- Lys-Ala
pdb|1JEV|A Chain A, Oligo-peptide Binding Protein (oppa) Complexed With Kwk
pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kak
pdb|1JEU|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kek
pdb|2RKM|A Chain A, Structure Of Oppa Complexed With Lys-Lys
pdb|1B32|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kmk
pdb|1B3F|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Khk
pdb|1B3G|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kik
pdb|1B3L|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B3L|C Chain C, Oligo-Peptide Binding Protein (Oppa) Complexed With Kgk
pdb|1B7H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Norleucyl-Lysine
pdb|1B0H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Napthylalanyl-Lysine
pdb|1B1H|A Chain A, Oligo-Peptide Binding ProteinTRIPEPTIDE (LYS HPE LYS)
Complex
pdb|1B2H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Ornithyl-Lysine
pdb|1B3H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Cyclohexylalanyl-Lysine
pdb|1B4H|A Chain A, Oligo-Peptide Binding Protein Complexed With Lysyl-
Diaminobutyric Acid-Lysine
pdb|1B5H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Diaminopropanoic Acid-Lysine
pdb|1B6H|A Chain A, Oligo-Peptide Binding Protein Complexed With
Lysyl-Norvalyl- Lysine
pdb|1B52|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ktk
pdb|1B51|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Ksk
pdb|1B5I|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Knk
pdb|1B5J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kqk
pdb|1B46|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kpk
pdb|1B9J|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Klk
pdb|1QKA|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Krk
pdb|1QKB|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kvk
pdb|1B4Z|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kdk
pdb|1B58|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kyk
pdb|1B40|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kfk
pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein Complexed With
Lys-Cys-Lys
pdb|1RKM|A Chain A, Structure Of Oppa
Length = 517
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 10 LLVMATLFAVPVSYAAVYKVGDSAGWTTIGNIDYKQWAATKTFQVGDIIHFEYNPQF 66
LLV ++ VP S AV K GD WT NI K + V + I E NPQ+
Sbjct: 158 LLVHPSVSPVPKS--AVEKFGDK--WTQPANIVTNGAYKLKNWVVNERIVLERNPQY 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,095,270
Number of Sequences: 62578
Number of extensions: 174868
Number of successful extensions: 415
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 8
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)