Query 029659
Match_columns 190
No_of_seqs 152 out of 874
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 16:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 3.2E-43 7E-48 286.6 16.1 108 16-126 12-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 1.1E-32 2.4E-37 202.2 5.0 84 35-118 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.5 1.8E-06 4E-11 66.5 11.6 91 20-125 24-119 (119)
4 PF00127 Copper-bind: Copper b 98.4 1.3E-06 2.8E-11 64.9 8.2 75 49-125 18-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.3 5.3E-06 1.2E-10 61.7 9.2 89 27-125 3-99 (99)
6 TIGR03102 halo_cynanin halocya 98.1 4.3E-05 9.4E-10 59.2 9.4 86 25-125 24-115 (115)
7 COG3794 PetE Plastocyanin [Ene 98.0 4.3E-05 9.4E-10 60.4 8.9 69 49-125 55-127 (128)
8 TIGR02375 pseudoazurin pseudoa 98.0 5.2E-05 1.1E-09 58.8 8.3 74 49-127 16-89 (116)
9 TIGR03095 rusti_cyanin rusticy 97.2 0.0025 5.5E-08 51.2 8.3 73 49-124 53-147 (148)
10 TIGR02657 amicyanin amicyanin. 97.2 0.0028 6.1E-08 45.5 7.7 70 49-125 12-83 (83)
11 PF06525 SoxE: Sulfocyanin (So 96.7 0.012 2.5E-07 49.7 8.6 77 53-129 91-190 (196)
12 KOG3858 Ephrin, ligand for Eph 96.2 0.23 4.9E-06 43.1 13.9 78 51-129 46-164 (233)
13 PF00812 Ephrin: Ephrin; Inte 95.3 0.012 2.6E-07 47.4 2.3 75 51-125 25-144 (145)
14 PF13473 Cupredoxin_1: Cupredo 94.9 0.039 8.4E-07 40.9 4.1 63 49-124 36-104 (104)
15 TIGR03094 sulfo_cyanin sulfocy 94.5 0.043 9.4E-07 46.1 3.7 29 100-128 160-188 (195)
16 TIGR03096 nitroso_cyanin nitro 94.0 0.1 2.3E-06 41.6 4.7 57 48-115 61-123 (135)
17 COG4454 Uncharacterized copper 92.4 0.19 4.2E-06 41.1 4.1 78 48-125 63-157 (158)
18 PLN02354 copper ion binding / 89.2 5 0.00011 38.7 11.1 76 49-127 59-147 (552)
19 TIGR02695 azurin azurin. Azuri 87.5 2.6 5.7E-05 33.3 6.6 28 95-123 92-124 (125)
20 PRK02888 nitrous-oxide reducta 84.9 3 6.4E-05 41.0 6.9 67 49-126 556-634 (635)
21 TIGR02376 Cu_nitrite_red nitri 84.3 2.6 5.7E-05 37.5 5.9 76 49-127 60-147 (311)
22 TIGR02866 CoxB cytochrome c ox 82.5 4.2 9.1E-05 33.8 6.1 86 27-126 94-192 (201)
23 PF05283 MGC-24: Multi-glycosy 81.8 12 0.00025 31.5 8.5 22 99-120 71-92 (186)
24 PLN02604 oxidoreductase 81.6 13 0.00028 35.8 9.9 79 48-127 55-145 (566)
25 PF07732 Cu-oxidase_3: Multico 80.4 1.5 3.2E-05 33.6 2.5 77 49-126 27-115 (117)
26 COG1622 CyoA Heme/copper-type 78.0 7 0.00015 34.1 6.2 91 27-127 116-213 (247)
27 PF00116 COX2: Cytochrome C ox 77.0 4.7 0.0001 31.0 4.4 65 49-124 47-119 (120)
28 PF02839 CBM_5_12: Carbohydrat 71.3 2.2 4.7E-05 26.4 1.0 18 43-60 1-18 (41)
29 TIGR03388 ascorbase L-ascorbat 67.3 14 0.00031 35.2 6.1 78 49-128 33-123 (541)
30 PRK10378 inactive ferrous ion 66.2 33 0.00072 31.8 8.0 28 95-127 91-118 (375)
31 PLN00044 multi-copper oxidase- 66.0 79 0.0017 31.0 10.9 34 95-128 504-537 (596)
32 PLN00044 multi-copper oxidase- 64.9 32 0.00068 33.7 8.0 73 49-128 61-150 (596)
33 PF10731 Anophelin: Thrombin i 63.2 4.5 9.8E-05 28.3 1.4 31 1-33 1-31 (65)
34 TIGR01480 copper_res_A copper- 60.2 29 0.00063 33.8 6.8 85 35-124 488-586 (587)
35 TIGR02228 sigpep_I_arch signal 60.1 23 0.0005 28.6 5.2 24 49-72 58-85 (158)
36 PF09792 But2: Ubiquitin 3 bin 59.1 40 0.00087 26.8 6.4 31 95-128 100-130 (143)
37 PLN02835 oxidoreductase 58.6 80 0.0017 30.4 9.4 75 49-126 61-148 (539)
38 MTH00047 COX2 cytochrome c oxi 58.3 15 0.00033 30.8 4.0 32 95-128 159-193 (194)
39 cd06555 ASCH_PF0470_like ASC-1 53.3 15 0.00033 28.2 2.9 15 50-64 30-44 (109)
40 PLN02168 copper ion binding / 52.9 89 0.0019 30.2 8.7 76 49-127 58-146 (545)
41 PF07172 GRP: Glycine rich pro 52.5 10 0.00022 28.4 1.8 8 1-8 1-8 (95)
42 PRK11486 flagellar biosynthesi 51.0 20 0.00042 28.3 3.3 32 155-186 8-39 (124)
43 PF05382 Amidase_5: Bacterioph 46.8 53 0.0012 26.4 5.3 35 50-84 74-113 (145)
44 PF12961 DUF3850: Domain of Un 46.7 12 0.00027 26.8 1.4 13 49-61 26-38 (72)
45 COG3889 Predicted solute bindi 42.8 44 0.00095 34.0 5.0 30 154-183 836-866 (872)
46 PLN02191 L-ascorbate oxidase 41.5 50 0.0011 32.0 5.2 76 49-126 55-143 (574)
47 TIGR00370 conserved hypothetic 41.1 20 0.00044 30.2 2.1 37 25-61 162-202 (202)
48 PLN02792 oxidoreductase 39.7 94 0.002 30.0 6.6 75 49-126 48-135 (536)
49 PF02362 B3: B3 DNA binding do 36.2 24 0.00051 25.1 1.6 20 46-65 68-87 (100)
50 MTH00140 COX2 cytochrome c oxi 36.1 54 0.0012 27.9 4.0 30 95-126 183-215 (228)
51 PF04014 Antitoxin-MazE: Antid 36.1 15 0.00033 23.3 0.5 33 28-65 2-34 (47)
52 smart00495 ChtBD3 Chitin-bindi 35.6 22 0.00048 21.8 1.2 18 43-60 1-18 (41)
53 KOG1263 Multicopper oxidases [ 35.2 60 0.0013 31.7 4.6 35 95-129 506-540 (563)
54 PF07731 Cu-oxidase_2: Multico 34.8 63 0.0014 24.2 3.8 32 95-126 105-136 (138)
55 PF06679 DUF1180: Protein of u 33.8 2E+02 0.0044 23.6 6.9 12 176-187 103-114 (163)
56 PRK09723 putative fimbrial-lik 32.5 3.1E+02 0.0066 26.0 8.6 16 19-34 22-37 (421)
57 PF10377 ATG11: Autophagy-rela 32.2 31 0.00068 27.0 1.8 18 50-67 41-58 (129)
58 TIGR01480 copper_res_A copper- 32.1 1.8E+02 0.0038 28.5 7.2 76 49-126 77-162 (587)
59 TIGR03389 laccase laccase, pla 31.3 1.3E+02 0.0029 28.7 6.2 77 51-128 37-124 (539)
60 KOG2315 Predicted translation 31.1 98 0.0021 30.2 5.2 63 46-108 209-277 (566)
61 PF14326 DUF4384: Domain of un 30.4 38 0.00083 23.9 1.9 15 51-65 2-16 (83)
62 PLN02792 oxidoreductase 30.3 81 0.0018 30.4 4.6 34 95-128 474-507 (536)
63 PF06462 Hyd_WA: Propeller; I 30.0 1E+02 0.0022 18.3 3.4 25 95-119 3-27 (32)
64 PTZ00047 cytochrome c oxidase 29.0 83 0.0018 25.9 3.8 30 95-126 116-148 (162)
65 MTH00154 COX2 cytochrome c oxi 28.7 82 0.0018 26.9 3.9 30 95-126 183-215 (227)
66 PF08194 DIM: DIM protein; In 28.4 86 0.0019 19.6 2.9 28 4-31 4-31 (36)
67 MTH00168 COX2 cytochrome c oxi 27.8 87 0.0019 26.6 3.9 30 95-126 183-215 (225)
68 PLN02991 oxidoreductase 27.5 2.3E+02 0.0049 27.5 7.1 84 50-136 61-154 (543)
69 MTH00139 COX2 cytochrome c oxi 27.1 87 0.0019 26.6 3.8 30 95-126 183-215 (226)
70 MTH00129 COX2 cytochrome c oxi 26.9 85 0.0018 26.8 3.7 30 95-126 183-215 (230)
71 PTZ00213 asparagine synthetase 26.8 64 0.0014 29.7 3.0 25 23-49 196-227 (348)
72 KOG1263 Multicopper oxidases [ 26.5 2.7E+02 0.0059 27.2 7.4 77 49-129 60-150 (563)
73 cd00645 AsnA Asparagine synthe 26.3 63 0.0014 29.3 2.9 33 23-62 185-224 (309)
74 MTH00098 COX2 cytochrome c oxi 26.0 95 0.0021 26.5 3.9 30 95-126 183-215 (227)
75 MTH00117 COX2 cytochrome c oxi 26.0 98 0.0021 26.4 3.9 30 95-126 183-215 (227)
76 PF11604 CusF_Ec: Copper bindi 25.7 47 0.001 23.1 1.6 23 43-65 34-56 (70)
77 TIGR01433 CyoA cytochrome o ub 25.4 1E+02 0.0022 26.3 3.9 30 95-126 182-214 (226)
78 MTH00038 COX2 cytochrome c oxi 25.1 1.1E+02 0.0023 26.2 4.0 30 95-126 183-215 (229)
79 PF11766 Candida_ALS_N: Cell-w 24.7 37 0.00079 29.7 1.1 36 49-84 6-48 (249)
80 PF12195 End_beta_barrel: Beta 24.3 40 0.00088 24.6 1.1 49 49-106 25-79 (83)
81 PF01345 DUF11: Domain of unkn 23.7 58 0.0013 22.2 1.8 22 42-63 27-48 (76)
82 PF03590 AsnA: Aspartate-ammon 22.7 89 0.0019 27.4 3.0 37 23-61 191-238 (244)
83 MTH00023 COX2 cytochrome c oxi 22.7 1.2E+02 0.0026 26.1 3.8 30 95-126 194-226 (240)
84 KOG3416 Predicted nucleic acid 22.4 79 0.0017 25.3 2.4 30 27-61 41-71 (134)
85 TIGR01432 QOXA cytochrome aa3 22.4 1.1E+02 0.0025 25.6 3.6 30 95-126 173-205 (217)
86 PF12791 RsgI_N: Anti-sigma fa 22.3 2.2E+02 0.0047 18.4 4.3 35 92-127 5-39 (56)
87 cd02859 AMPKbeta_GBD_like AMP- 22.1 2.7E+02 0.0059 19.3 5.0 22 57-78 3-25 (79)
88 PRK06975 bifunctional uroporph 22.0 2.2E+02 0.0048 28.1 6.0 8 24-31 82-89 (656)
89 cd05808 CBM20_alpha_amylase Al 22.0 1.1E+02 0.0024 21.5 3.1 39 25-63 16-62 (95)
90 PRK05425 asparagine synthetase 21.8 85 0.0018 28.7 2.8 41 23-72 195-242 (327)
91 PF00686 CBM_20: Starch bindin 21.5 1.3E+02 0.0028 21.5 3.3 40 25-64 17-68 (96)
92 MTH00008 COX2 cytochrome c oxi 20.6 1.4E+02 0.003 25.5 3.8 30 95-126 183-215 (228)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=286.62 Aligned_cols=108 Identities=36% Similarity=0.700 Sum_probs=101.2
Q ss_pred HhhcccccceEEEecCCCCCcccCCCCcccccCCCeEEeCCEEEEEeCCCcccEEEEcccccccCCCCCCCcccccCCcE
Q 029659 16 LFAVPVSYAAVYKVGDSAGWTTIGNIDYKQWAATKTFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTSAPLATFTTGNDS 95 (190)
Q Consensus 16 ~~~~~~a~a~~~~VG~~~GW~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~s~~~~~~s~G~~~ 95 (190)
+++...+.+++|+|||+.||+. +.+|++||++|+|++||+|+|+|+++.|||+||++++|++|+.++++..+++|++.
T Consensus 12 ~~~~~~~~a~~~~VGd~~GW~~--~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~ 89 (167)
T PLN03148 12 LFSASATTATDHIVGANKGWNP--GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDF 89 (167)
T ss_pred HHhhhhccceEEEeCCCCCcCC--CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcE
Confidence 3456677899999999999995 57899999999999999999999999999999999999999999999999999999
Q ss_pred EEecccceEEEEcCCCCCCCCCCeEEEEeec
Q 029659 96 ITITAKGHHFFFCGVPGHCQSGQKVDINVLR 126 (190)
Q Consensus 96 v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~~ 126 (190)
|+|+++|+|||||+ .+||++||||.|+|.+
T Consensus 90 v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 90 IPLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred EEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 99999999999999 6999999999999964
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=1.1e-32 Score=202.23 Aligned_cols=84 Identities=50% Similarity=1.053 Sum_probs=69.3
Q ss_pred CcccC-CCCcccccCCCeEEeCCEEEEEeCCCcccEEEEcccccccCCCCCCCcccccCCcEEEecccceEEEEcCCCCC
Q 029659 35 WTTIG-NIDYKQWAATKTFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTSAPLATFTTGNDSITITAKGHHFFFCGVPGH 113 (190)
Q Consensus 35 W~~~~-~~~Y~~WA~~~~F~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~s~~~~~~s~G~~~v~L~~~G~~YFiC~v~~H 113 (190)
|+++. ..+|++||++++|++||+|+|+|+++.|||+||+|++|++|+.++++..+++|++.|+|+++|++||||++++|
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H 80 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH 80 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence 78763 25899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 029659 114 CQSGQ 118 (190)
Q Consensus 114 C~~Gq 118 (190)
|+.||
T Consensus 81 C~~Gq 85 (85)
T PF02298_consen 81 CQKGQ 85 (85)
T ss_dssp TTTT-
T ss_pred ccccC
Confidence 99998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.53 E-value=1.8e-06 Score=66.48 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=59.1
Q ss_pred ccccceEEE--ecCCCCC-cccCCCCcccccCCCeEEeCCEEEEEeC-CCcccEEEEcccccccCCCCCCCcccccCC-c
Q 029659 20 PVSYAAVYK--VGDSAGW-TTIGNIDYKQWAATKTFQVGDIIHFEYN-PQFHNVMRVTHAMYRACNTSAPLATFTTGN-D 94 (190)
Q Consensus 20 ~~a~a~~~~--VG~~~GW-~~~~~~~Y~~WA~~~~F~vGD~LvF~y~-~~~HsV~~V~~~~Y~~C~~s~~~~~~s~G~-~ 94 (190)
..+.+++|+ +|.++|+ .+.|+ ..++++||+|.|..+ ...||+.--.. +....++ .....|. .
T Consensus 24 ~~a~a~~~~V~~~~~~~~~~F~P~--------~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~~--~~~~pg~t~ 90 (119)
T PRK02710 24 SSASAETVEVKMGSDAGMLAFEPS--------TLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHKD--LAFAPGESW 90 (119)
T ss_pred cccccceEEEEEccCCCeeEEeCC--------EEEEcCCCEEEEEECCCCCceEEecCC---ccccccc--cccCCCCEE
Confidence 344555554 4655554 44343 679999999999864 35799863211 1110111 1223443 3
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEee
Q 029659 95 SITITAKGHHFFFCGVPGHCQSGQKVDINVL 125 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~ 125 (190)
.++++++|.|-|+|. .|=+.|||-.|.|.
T Consensus 91 ~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 91 EETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 788999999999998 79999999999983
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.43 E-value=1.3e-06 Score=64.86 Aligned_cols=75 Identities=28% Similarity=0.416 Sum_probs=53.0
Q ss_pred CCeEEeCCEEEEEeC-CCcccEEEEccc--ccccCCCCCC---CcccccCCc-EEEecccceEEEEcCCCCCCCCCCeEE
Q 029659 49 TKTFQVGDIIHFEYN-PQFHNVMRVTHA--MYRACNTSAP---LATFTTGND-SITITAKGHHFFFCGVPGHCQSGQKVD 121 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~-~~~HsV~~V~~~--~Y~~C~~s~~---~~~~s~G~~-~v~L~~~G~~YFiC~v~~HC~~GqKl~ 121 (190)
..++++||+|.|..+ ...||+...+.. .-..++.... ......|.+ .++++++|.|.|+|. + |...||+-.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 578999999999994 567999988521 0111221111 112234444 678889999999999 8 999999999
Q ss_pred EEee
Q 029659 122 INVL 125 (190)
Q Consensus 122 I~V~ 125 (190)
|.|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9884
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.32 E-value=5.3e-06 Score=61.72 Aligned_cols=89 Identities=22% Similarity=0.242 Sum_probs=57.3
Q ss_pred EEecC-CCCCcccCCCCcccccCCCeEEeCCEEEEEeCC-CcccEEEEccc--c---cccCCCCCCCcccccCCc-EEEe
Q 029659 27 YKVGD-SAGWTTIGNIDYKQWAATKTFQVGDIIHFEYNP-QFHNVMRVTHA--M---YRACNTSAPLATFTTGND-SITI 98 (190)
Q Consensus 27 ~~VG~-~~GW~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~-~~HsV~~V~~~--~---Y~~C~~s~~~~~~s~G~~-~v~L 98 (190)
..+|. +.+-.+.|+ ..++++||+|+|..+. ..|+++..+.. + ...............|.+ .+++
T Consensus 3 v~~g~~~g~~~F~P~--------~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF 74 (99)
T TIGR02656 3 VKMGADKGALVFEPA--------KISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTF 74 (99)
T ss_pred EEEecCCCceeEeCC--------EEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEe
Confidence 44564 334666554 6799999999999653 56999864321 0 000111000011233443 6888
Q ss_pred cccceEEEEcCCCCCCCCCCeEEEEee
Q 029659 99 TAKGHHFFFCGVPGHCQSGQKVDINVL 125 (190)
Q Consensus 99 ~~~G~~YFiC~v~~HC~~GqKl~I~V~ 125 (190)
+.+|+|-|+|. +|++.||+-.|.|.
T Consensus 75 ~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 75 STPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CCCEEEEEEcC--CccccCCEEEEEEC
Confidence 89999999999 89999999999884
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.05 E-value=4.3e-05 Score=59.16 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=59.3
Q ss_pred eEEEec--CC-CCCcccCCCCcccccCCCeEEeCCEEEEEeCC--CcccEEEEcccccccCCCCCCCcccccCC-cEEEe
Q 029659 25 AVYKVG--DS-AGWTTIGNIDYKQWAATKTFQVGDIIHFEYNP--QFHNVMRVTHAMYRACNTSAPLATFTTGN-DSITI 98 (190)
Q Consensus 25 ~~~~VG--~~-~GW~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~--~~HsV~~V~~~~Y~~C~~s~~~~~~s~G~-~~v~L 98 (190)
.+..|| ++ .+..+.|. ..++++||+|+|.++. ..|||.-.....|+. .. .....|. -.+++
T Consensus 24 ~~v~~G~~~~~g~~~F~P~--------~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~-~~~~~G~t~s~Tf 90 (115)
T TIGR03102 24 VTVDVGAEANGGGFAFDPP--------AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE-RVSEEGTTYEHTF 90 (115)
T ss_pred EEEEecccCCCCceeEeCC--------EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc-cccCCCCEEEEEe
Confidence 456777 22 23666553 5799999999999864 579997533333441 11 1123343 37899
Q ss_pred cccceEEEEcCCCCCCCCCCeEEEEee
Q 029659 99 TAKGHHFFFCGVPGHCQSGQKVDINVL 125 (190)
Q Consensus 99 ~~~G~~YFiC~v~~HC~~GqKl~I~V~ 125 (190)
+++|.|-|+|. -|=..|||-.|.|.
T Consensus 91 ~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 99999999999 48777999999883
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.01 E-value=4.3e-05 Score=60.35 Aligned_cols=69 Identities=25% Similarity=0.266 Sum_probs=52.3
Q ss_pred CCeEEeCCEEEEEeCCC-cccEEEEcccccccCCCCCCCcccccC--C-cEEEecccceEEEEcCCCCCCCCCCeEEEEe
Q 029659 49 TKTFQVGDIIHFEYNPQ-FHNVMRVTHAMYRACNTSAPLATFTTG--N-DSITITAKGHHFFFCGVPGHCQSGQKVDINV 124 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~-~HsV~~V~~~~Y~~C~~s~~~~~~s~G--~-~~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V 124 (190)
..+.++||++.|.+... .|||.-....+ . .....+..+ . .+.+++++|.|.|+|.- |=..|||-.|.|
T Consensus 55 ~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~-----~-~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~IvV 126 (128)
T COG3794 55 EVTVKPGDTVTWVNTDSVGHNVTAVGGMD-----P-EGSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIVV 126 (128)
T ss_pred EEEECCCCEEEEEECCCCCceEEEeCCCC-----c-ccccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEEe
Confidence 67999999999999987 89998774331 1 111222222 2 26889999999999985 989999999988
Q ss_pred e
Q 029659 125 L 125 (190)
Q Consensus 125 ~ 125 (190)
.
T Consensus 127 ~ 127 (128)
T COG3794 127 G 127 (128)
T ss_pred C
Confidence 5
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.95 E-value=5.2e-05 Score=58.76 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=52.2
Q ss_pred CCeEEeCCEEEEEeCCCcccEEEEcccccccCCCCCCCcccccCCcEEEecccceEEEEcCCCCCCCCCCeEEEEeecC
Q 029659 49 TKTFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTSAPLATFTTGNDSITITAKGHHFFFCGVPGHCQSGQKVDINVLRT 127 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~s~~~~~~s~G~~~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~~~ 127 (190)
..++++||+|+|.+....|||..+....-+. .+....-.+..-.++++++|.|-|.|. .|=..||+-.|.|...
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 5789999999999987789998642211110 111111011223788999999999998 7999999999999763
No 9
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.17 E-value=0.0025 Score=51.15 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=48.8
Q ss_pred CCeEEeCCEEEEEeCCC----cccEEEEccc-ccc------------cCCCCCCCcccccC-----CcEEEecccceEEE
Q 029659 49 TKTFQVGDIIHFEYNPQ----FHNVMRVTHA-MYR------------ACNTSAPLATFTTG-----NDSITITAKGHHFF 106 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~----~HsV~~V~~~-~Y~------------~C~~s~~~~~~s~G-----~~~v~L~~~G~~YF 106 (190)
..+++.||+++|...+. .|+....++. .+. .|....+ ..+| .-+++.+++|+|||
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywy 129 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWY 129 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEE
Confidence 34678999999999764 5666654321 110 1211111 1122 23677789999999
Q ss_pred EcCCCCCCCCCCeEEEEe
Q 029659 107 FCGVPGHCQSGQKVDINV 124 (190)
Q Consensus 107 iC~v~~HC~~GqKl~I~V 124 (190)
.|.+++|=+.||+-.|.|
T Consensus 130 hC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 130 LCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EcCChhHHHCCCEEEEEE
Confidence 999999999999988876
No 10
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.16 E-value=0.0028 Score=45.55 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=46.7
Q ss_pred CCeEEeCCEEEEEeCCC-cccEEEEcccccccCCCCCCCcccccCCc-EEEecccceEEEEcCCCCCCCCCCeEEEEee
Q 029659 49 TKTFQVGDIIHFEYNPQ-FHNVMRVTHAMYRACNTSAPLATFTTGND-SITITAKGHHFFFCGVPGHCQSGQKVDINVL 125 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~-~HsV~~V~~~~Y~~C~~s~~~~~~s~G~~-~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~ 125 (190)
..++++||+|.|+.+.. .|||.-.+... ..=+...+ ....|.+ .++++++|+|-|.|.... +||-.|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 46889999999998754 79998653221 11000111 1233443 789999999999999743 599998873
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.68 E-value=0.012 Score=49.72 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=48.9
Q ss_pred EeCCEEEEEeCCC---cccEEEEcc-cccccCCCC---CCCc-------------ccccCCcE--EEec-ccceEEEEcC
Q 029659 53 QVGDIIHFEYNPQ---FHNVMRVTH-AMYRACNTS---APLA-------------TFTTGNDS--ITIT-AKGHHFFFCG 109 (190)
Q Consensus 53 ~vGD~LvF~y~~~---~HsV~~V~~-~~Y~~C~~s---~~~~-------------~~s~G~~~--v~L~-~~G~~YFiC~ 109 (190)
-.|-++.|+|.+. .|+++.|.. ..+..+..- +.+- ....|... +..+ .+|.||+.|+
T Consensus 91 PAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC~ 170 (196)
T PF06525_consen 91 PAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVCG 170 (196)
T ss_pred cCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEcc
Confidence 3688888888763 699988832 223333211 1111 01123332 2212 5999999999
Q ss_pred CCCCCCCCCeEEEEeecCCC
Q 029659 110 VPGHCQSGQKVDINVLRTPT 129 (190)
Q Consensus 110 v~~HC~~GqKl~I~V~~~~~ 129 (190)
++||=+.||-..+.|...-.
T Consensus 171 ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 171 IPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred CCChhhcCCEEEEEEecCcc
Confidence 99999999999999976653
No 12
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.21 E-value=0.23 Score=43.06 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=47.1
Q ss_pred eEEeCCEEEEEeCC---C------cccEEEEcccccccCCC-CCCCccc------------------ccCCcEEEecccc
Q 029659 51 TFQVGDIIHFEYNP---Q------FHNVMRVTHAMYRACNT-SAPLATF------------------TTGNDSITITAKG 102 (190)
Q Consensus 51 ~F~vGD~LvF~y~~---~------~HsV~~V~~~~Y~~C~~-s~~~~~~------------------s~G~~~v~L~~~G 102 (190)
..++||.|-+--.. + ..=+++|++++|+.|+. +.+...+ +.-+..+.. ++|
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence 45568888876532 1 12357899999999996 3332221 111112333 356
Q ss_pred -eEEEEcC-----------CCCCCCC-CCeEEEEeecCCC
Q 029659 103 -HHFFFCG-----------VPGHCQS-GQKVDINVLRTPT 129 (190)
Q Consensus 103 -~~YFiC~-----------v~~HC~~-GqKl~I~V~~~~~ 129 (190)
+||||++ .++-|.. .||+.+.|...+.
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 5888886 2355653 6999999987554
No 13
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=95.26 E-value=0.012 Score=47.36 Aligned_cols=75 Identities=23% Similarity=0.435 Sum_probs=45.3
Q ss_pred eEEeCCEEEEEeCCC-----------cccEEEEcccccccCCCC-CCCccc-------ccCCcEEEec------------
Q 029659 51 TFQVGDIIHFEYNPQ-----------FHNVMRVTHAMYRACNTS-APLATF-------TTGNDSITIT------------ 99 (190)
Q Consensus 51 ~F~vGD~LvF~y~~~-----------~HsV~~V~~~~Y~~C~~s-~~~~~~-------s~G~~~v~L~------------ 99 (190)
..+.||.|.|--... ...+++|++++|+.|+.. .+...+ ..|+..|++.
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 677899999976532 345789999999999963 222222 1234444331
Q ss_pred -ccce-EEEEcCC-----------CCCCCC-CCeEEEEee
Q 029659 100 -AKGH-HFFFCGV-----------PGHCQS-GQKVDINVL 125 (190)
Q Consensus 100 -~~G~-~YFiC~v-----------~~HC~~-GqKl~I~V~ 125 (190)
++|. ||||++= +|-|.. .|||.|.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 3664 8888862 233764 789998874
No 14
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.94 E-value=0.039 Score=40.89 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=29.7
Q ss_pred CCeEEeCCEEEEEeCC---CcccEEEEcccccccCCCCCCCcccccCCc-EEEe--cccceEEEEcCCCCCCCCCCeEEE
Q 029659 49 TKTFQVGDIIHFEYNP---QFHNVMRVTHAMYRACNTSAPLATFTTGND-SITI--TAKGHHFFFCGVPGHCQSGQKVDI 122 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~---~~HsV~~V~~~~Y~~C~~s~~~~~~s~G~~-~v~L--~~~G~~YFiC~v~~HC~~GqKl~I 122 (190)
..+++.|+.+.+.+.+ ..|++..- . .+.......|.+ ++++ +++|.|=|+|+...+ ||-.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~-~--------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIP-D--------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEG-G--------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEEC-C--------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 6799999955555543 34555321 1 111122344443 4555 899999999997653 66555
Q ss_pred Ee
Q 029659 123 NV 124 (190)
Q Consensus 123 ~V 124 (190)
.|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 43
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.49 E-value=0.043 Score=46.06 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=26.0
Q ss_pred ccceEEEEcCCCCCCCCCCeEEEEeecCC
Q 029659 100 AKGHHFFFCGVPGHCQSGQKVDINVLRTP 128 (190)
Q Consensus 100 ~~G~~YFiC~v~~HC~~GqKl~I~V~~~~ 128 (190)
++|.||+.|+++||-+.||=..+-|...-
T Consensus 160 ~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 160 SAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred CCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 79999999999999999999888886654
No 16
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=93.97 E-value=0.1 Score=41.62 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCCeEEeCCEEEEEeCCC---cccEEEEcccccccCCCCCCCcccccCCc---EEEecccceEEEEcCCCCCCC
Q 029659 48 ATKTFQVGDIIHFEYNPQ---FHNVMRVTHAMYRACNTSAPLATFTTGND---SITITAKGHHFFFCGVPGHCQ 115 (190)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~---~HsV~~V~~~~Y~~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~v~~HC~ 115 (190)
+..+++.||.+.+++.+. .|++.. .+|+ . ......|.+ +++.+++|+|.|+|+. ||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---i---s~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---I---SEVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---c---ceEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 345788999999987643 244332 1221 1 122333444 4677899999999986 664
No 17
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.43 E-value=0.19 Score=41.08 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=48.7
Q ss_pred CCCeEEeCCEEEEEeCCC---cccEEEE--c--ccccccC----CC--CCCC-cccccCCc---EEEecccceEEEEcCC
Q 029659 48 ATKTFQVGDIIHFEYNPQ---FHNVMRV--T--HAMYRAC----NT--SAPL-ATFTTGND---SITITAKGHHFFFCGV 110 (190)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~---~HsV~~V--~--~~~Y~~C----~~--s~~~-~~~s~G~~---~v~L~~~G~~YFiC~v 110 (190)
++..++-|-+++|.-.+. .|....- + .+-+..= |- ..+. .....|.. .+.++++|.|=|+|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~i 142 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACNI 142 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEecC
Confidence 456788999998877654 3444322 0 0001000 00 0111 12233333 6778889999999999
Q ss_pred CCCCCCCCeEEEEee
Q 029659 111 PGHCQSGQKVDINVL 125 (190)
Q Consensus 111 ~~HC~~GqKl~I~V~ 125 (190)
++|-+.||.-.|+|.
T Consensus 143 PGHy~AGM~g~itV~ 157 (158)
T COG4454 143 PGHYEAGMVGEITVS 157 (158)
T ss_pred CCcccCCcEEEEEeC
Confidence 999999999999985
No 18
>PLN02354 copper ion binding / oxidoreductase
Probab=89.23 E-value=5 Score=38.66 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCeEEeCCEEEEEeCCC--------cccEEEEccccccc-CCCCCCCcccccCCc---EEEe-cccceEEEEcCCCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQ--------FHNVMRVTHAMYRA-CNTSAPLATFTTGND---SITI-TAKGHHFFFCGVPGHCQ 115 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~-C~~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~v~~HC~ 115 (190)
..+++.||+|+.+..++ -|-+.|-.....|. -...-+| ..|.+ .|++ +..|++||=+-...+-.
T Consensus 59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI---~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~ 135 (552)
T PLN02354 59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPI---PPGTNFTYHFQPKDQIGSYFYYPSTGMHRA 135 (552)
T ss_pred cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCC---CCCCcEEEEEEeCCCCcceEEecCccceec
Confidence 45789999999988764 24444432111222 0000022 23333 5777 47899999998888888
Q ss_pred CCCeEEEEeecC
Q 029659 116 SGQKVDINVLRT 127 (190)
Q Consensus 116 ~GqKl~I~V~~~ 127 (190)
.|+.-.|-|...
T Consensus 136 ~Gl~G~lII~~~ 147 (552)
T PLN02354 136 AGGFGGLRVNSR 147 (552)
T ss_pred CCccceEEEcCC
Confidence 899888888654
No 19
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=87.46 E-value=2.6 Score=33.31 Aligned_cols=28 Identities=32% Similarity=0.666 Sum_probs=20.8
Q ss_pred EEEec----ccce-EEEEcCCCCCCCCCCeEEEE
Q 029659 95 SITIT----AKGH-HFFFCGVPGHCQSGQKVDIN 123 (190)
Q Consensus 95 ~v~L~----~~G~-~YFiC~v~~HC~~GqKl~I~ 123 (190)
.|+++ ++|. |=|+|++|||=. .||-.++
T Consensus 92 svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 92 SVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 45554 4676 779999999986 6887654
No 20
>PRK02888 nitrous-oxide reductase; Validated
Probab=84.88 E-value=3 Score=41.04 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=42.2
Q ss_pred CCeEEeCCEEEEEeCCC------cccEEEEcccccccCCCCCCCcccccCCc---EEEecccceEEEEcCCCCCCC---C
Q 029659 49 TKTFQVGDIIHFEYNPQ------FHNVMRVTHAMYRACNTSAPLATFTTGND---SITITAKGHHFFFCGVPGHCQ---S 116 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~------~HsV~~V~~~~Y~~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~v~~HC~---~ 116 (190)
..+++.||.+.|..++- .|.... ..| +.......|.+ .|+.+++|.|||+|+. .|- .
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~------nI~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~ 624 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNY------GVNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHM 624 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceee---ccc------CccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcc
Confidence 45788999999999762 233222 111 11112233433 5778899999999997 344 3
Q ss_pred CCeEEEEeec
Q 029659 117 GQKVDINVLR 126 (190)
Q Consensus 117 GqKl~I~V~~ 126 (190)
+|+-.|.|.+
T Consensus 625 ~M~G~~iVep 634 (635)
T PRK02888 625 EMRGRMLVEP 634 (635)
T ss_pred cceEEEEEEe
Confidence 7888888864
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=84.32 E-value=2.6 Score=37.47 Aligned_cols=76 Identities=24% Similarity=0.265 Sum_probs=48.6
Q ss_pred CCeEEeCCEEEEEeCCC-----cccEEEEcccccccCCCCCCCcccccCCc---EEEecccceEEEEcCC----CCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQ-----FHNVMRVTHAMYRACNTSAPLATFTTGND---SITITAKGHHFFFCGV----PGHCQS 116 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~-----~HsV~~V~~~~Y~~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~v----~~HC~~ 116 (190)
..+++.||+++.++.+. .|++..=-....+ ..........|.+ .|+++.+|+|||-|.. ..|=..
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~ 136 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS 136 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence 35789999999888765 3555321000000 1111122345544 5788899999999995 457788
Q ss_pred CCeEEEEeecC
Q 029659 117 GQKVDINVLRT 127 (190)
Q Consensus 117 GqKl~I~V~~~ 127 (190)
||.-.+.|...
T Consensus 137 Gl~G~liV~~~ 147 (311)
T TIGR02376 137 GMNGAIMVLPR 147 (311)
T ss_pred CcceEEEeecc
Confidence 99999988754
No 22
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=82.49 E-value=4.2 Score=33.79 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=50.3
Q ss_pred EEecCCCCCcccCCCCcccc------cCCCeEEeCCEEEEEeCCCcccEEEEcccccccCCCCCCCcc-cccCCc---EE
Q 029659 27 YKVGDSAGWTTIGNIDYKQW------AATKTFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTSAPLAT-FTTGND---SI 96 (190)
Q Consensus 27 ~~VG~~~GW~~~~~~~Y~~W------A~~~~F~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~s~~~~~-~s~G~~---~v 96 (190)
.++|..=.|.+. |.+. .....+.+|+.++|+-++. ||.. +|.- ..-.++. .-.|.. .+
T Consensus 94 ~v~~~qw~W~f~----Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~--DV~H----sf~i--p~~~~k~da~PG~~~~~~~ 161 (201)
T TIGR02866 94 KVEGHQWYWSFD----YPESRRGFTTVNELVVPAGTPVRLQVTSK--DVIH----SFWV--PELGGKIDAIPGQYNALWF 161 (201)
T ss_pred EEEEEEeEEEEE----cCCcCCCccccCEEEEEcCCEEEEEEEeC--chhh----cccc--cccCceEEecCCcEEEEEE
Confidence 556766567662 4433 1223577899999988764 4432 1100 1111111 112332 56
Q ss_pred EecccceEEEEcCCCCCCC---CCCeEEEEeec
Q 029659 97 TITAKGHHFFFCGVPGHCQ---SGQKVDINVLR 126 (190)
Q Consensus 97 ~L~~~G~~YFiC~v~~HC~---~GqKl~I~V~~ 126 (190)
+.+++|.|++.|+. .|- ..|++.|.|.+
T Consensus 162 ~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 162 NADEPGVYYGYCAE--LCGAGHSLMLFKVVVVE 192 (201)
T ss_pred EeCCCEEEEEEehh--hCCcCccCCeEEEEEEC
Confidence 78899999999997 444 46999998865
No 23
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=81.76 E-value=12 Score=31.49 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=16.8
Q ss_pred cccceEEEEcCCCCCCCCCCeE
Q 029659 99 TAKGHHFFFCGVPGHCQSGQKV 120 (190)
Q Consensus 99 ~~~G~~YFiC~v~~HC~~GqKl 120 (190)
+..+-.|..|.-.+||-+.-.+
T Consensus 71 n~s~C~W~~C~~~~~Cv~~stV 92 (186)
T PF05283_consen 71 NNSTCVWMECKGESYCVNNSTV 92 (186)
T ss_pred ccCceEeeecCCCCcccCCccc
Confidence 4567889999988999975433
No 24
>PLN02604 oxidoreductase
Probab=81.65 E-value=13 Score=35.82 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=49.3
Q ss_pred CCCeEEeCCEEEEEeCCCc----ccE-----EEEcccccccCCCCCCCcccccCCc---EEEecccceEEEEcCCCCCCC
Q 029659 48 ATKTFQVGDIIHFEYNPQF----HNV-----MRVTHAMYRACNTSAPLATFTTGND---SITITAKGHHFFFCGVPGHCQ 115 (190)
Q Consensus 48 ~~~~F~vGD~LvF~y~~~~----HsV-----~~V~~~~Y~~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~v~~HC~ 115 (190)
-..+++.||+++++..++. |++ .+.....+|. ...-.......|.+ .|+++++|++||=|-...|-.
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG-~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~ 133 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG-TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQRE 133 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC-CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHh
Confidence 4568999999999987652 222 1111011121 00000011233443 577889999999999999999
Q ss_pred CCCeEEEEeecC
Q 029659 116 SGQKVDINVLRT 127 (190)
Q Consensus 116 ~GqKl~I~V~~~ 127 (190)
.||.-.|.|...
T Consensus 134 ~Gl~G~liV~~~ 145 (566)
T PLN02604 134 AGLYGSIRVSLP 145 (566)
T ss_pred CCCeEEEEEEec
Confidence 999999888754
No 25
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=80.44 E-value=1.5 Score=33.58 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=45.6
Q ss_pred CCeEEeCCEEEEEeCCC---cccEEE----Eccc-ccccCCCCCCCcccccCCc---EEEecc-cceEEEEcCCCCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQ---FHNVMR----VTHA-MYRACNTSAPLATFTTGND---SITITA-KGHHFFFCGVPGHCQS 116 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~---~HsV~~----V~~~-~Y~~C~~s~~~~~~s~G~~---~v~L~~-~G~~YFiC~v~~HC~~ 116 (190)
..+++.||+|.+++.+. .+++-- +... ..|. ....+......|.+ .|+++. +|++||-|...+|=..
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG-~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~ 105 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDG-VPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVM 105 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSG-GTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCC-cccccceeEEeecceeeeEeeeccccceeEeeCCCchhcC
Confidence 45789999999999863 344421 1111 0111 00001111233333 678888 9999999998875448
Q ss_pred CCeEEEEeec
Q 029659 117 GQKVDINVLR 126 (190)
Q Consensus 117 GqKl~I~V~~ 126 (190)
||--.|-|..
T Consensus 106 GL~G~~iV~~ 115 (117)
T PF07732_consen 106 GLYGAIIVEP 115 (117)
T ss_dssp TEEEEEEEE-
T ss_pred cCEEEEEEcC
Confidence 9888887764
No 26
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=78.03 E-value=7 Score=34.06 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=53.5
Q ss_pred EEecCCCCCcccCCCCcccccCCC-eEEeCCEEEEEeCCCcccEEEEcccccccCCCCCCCcccccCC---cEEEecccc
Q 029659 27 YKVGDSAGWTTIGNIDYKQWAATK-TFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTSAPLATFTTGN---DSITITAKG 102 (190)
Q Consensus 27 ~~VG~~~GW~~~~~~~Y~~WA~~~-~F~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~s~~~~~~s~G~---~~v~L~~~G 102 (190)
.++|-.-.|.+.. .+|.-+..+. .+-+|..++|+-++. ||+- +|.-=+....+. --.|- ..++.+++|
T Consensus 116 ~v~~~qw~W~f~Y-p~~~~~t~n~l~lPv~~~V~f~ltS~--DViH----sF~IP~l~~k~d-~iPG~~~~~~~~~~~~G 187 (247)
T COG1622 116 EVTAYQWKWLFIY-PDYGIATVNELVLPVGRPVRFKLTSA--DVIH----SFWIPQLGGKID-AIPGMTTELWLTANKPG 187 (247)
T ss_pred EEEEEEEEEEEEc-cCcCccccceEEEeCCCeEEEEEEec--hhce----eEEecCCCceee-ecCCceEEEEEecCCCe
Confidence 3445444566532 1234444444 788999999999875 4432 111001111000 01222 257888999
Q ss_pred eEEEEcCCCCCCCC---CCeEEEEeecC
Q 029659 103 HHFFFCGVPGHCQS---GQKVDINVLRT 127 (190)
Q Consensus 103 ~~YFiC~v~~HC~~---GqKl~I~V~~~ 127 (190)
.|+.+|.. .|.. .|++.|.|.+.
T Consensus 188 ~Y~g~Cae--~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 188 TYRGICAE--YCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred EEEEEcHh--hcCCCcccceEEEEEEcH
Confidence 99999985 6765 49999999874
No 27
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=76.97 E-value=4.7 Score=31.03 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=39.0
Q ss_pred CCeEEeCCEEEEEeCCC--cccEEEEcccccccCCCCCCCcccccCCc---EEEecccceEEEEcCCCCCCCCC---CeE
Q 029659 49 TKTFQVGDIIHFEYNPQ--FHNVMRVTHAMYRACNTSAPLATFTTGND---SITITAKGHHFFFCGVPGHCQSG---QKV 120 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~--~HsV~~V~~~~Y~~C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~v~~HC~~G---qKl 120 (190)
...+..|+.+.|+.++. .|+... .+...+ ...-.|.. .++.+++|.|++.|.. .|-.| |+.
T Consensus 47 ~l~lp~g~~v~~~ltS~DViHsf~i-p~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~ 115 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDVIHSFWI-PELGIK--------MDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPG 115 (120)
T ss_dssp EEEEETTSEEEEEEEESSS-EEEEE-TTCTEE--------EEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EE
T ss_pred eecccccceEeEEEEcCCccccccc-cccCcc--------cccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeE
Confidence 33567899999888764 344432 111100 01123332 5778899999999986 78876 888
Q ss_pred EEEe
Q 029659 121 DINV 124 (190)
Q Consensus 121 ~I~V 124 (190)
.|.|
T Consensus 116 ~v~V 119 (120)
T PF00116_consen 116 KVIV 119 (120)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
No 28
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=71.29 E-value=2.2 Score=26.38 Aligned_cols=18 Identities=28% Similarity=0.842 Sum_probs=10.9
Q ss_pred cccccCCCeEEeCCEEEE
Q 029659 43 YKQWAATKTFQVGDIIHF 60 (190)
Q Consensus 43 Y~~WA~~~~F~vGD~LvF 60 (190)
|.+|..++....||.+.|
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp --B--TTCEE-TT-EEEE
T ss_pred CCCcCCCCEEcCCCEEEE
Confidence 578999999999999975
No 29
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=67.32 E-value=14 Score=35.22 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=49.1
Q ss_pred CCeEEeCCEEEEEeCCCc----ccE-----EEEccccccc-CCCCCCCcccccCCc---EEEecccceEEEEcCCCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQF----HNV-----MRVTHAMYRA-CNTSAPLATFTTGND---SITITAKGHHFFFCGVPGHCQ 115 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~~----HsV-----~~V~~~~Y~~-C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~v~~HC~ 115 (190)
..+++.||.|+++..++. +++ .+......|. -..++ .....|.+ .|+++.+|++||-|-...|-.
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq--~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~ 110 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQ--CAINPGETFIYNFVVDRPGTYFYHGHYGMQRS 110 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCcccc--CCcCCCCEEEEEEEcCCCEEEEEEecchHHhh
Confidence 458999999999887652 122 1111000111 00000 11233433 678899999999999999999
Q ss_pred CCCeEEEEeecCC
Q 029659 116 SGQKVDINVLRTP 128 (190)
Q Consensus 116 ~GqKl~I~V~~~~ 128 (190)
.||.-.|.|....
T Consensus 111 ~Gl~G~liV~~~~ 123 (541)
T TIGR03388 111 AGLYGSLIVDVPD 123 (541)
T ss_pred ccceEEEEEecCC
Confidence 9999999887543
No 30
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=66.21 E-value=33 Score=31.77 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=20.2
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeecC
Q 029659 95 SITITAKGHHFFFCGVPGHCQSGQKVDINVLRT 127 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~~~ 127 (190)
.++| ++|+|-|+|+. | ..||-.|+|...
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 4566 69999999976 5 335777888653
No 31
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=65.96 E-value=79 Score=31.01 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=29.1
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeecCC
Q 029659 95 SITITAKGHHFFFCGVPGHCQSGQKVDINVLRTP 128 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~~~~ 128 (190)
+|..|+||..+|=|-...|=-.||.+.+.|....
T Consensus 504 RF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~ 537 (596)
T PLN00044 504 LVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPE 537 (596)
T ss_pred EEecCCCEEehhhccCchhhcccCcEEEEEecCC
Confidence 5789999999999988888778999999888654
No 32
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=64.95 E-value=32 Score=33.71 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=48.7
Q ss_pred CCeEEeCCEEEEEeCCC--------cccEEEEcccccc-----cCCCCCCCcccccCCc---EEEe-cccceEEEEcCCC
Q 029659 49 TKTFQVGDIIHFEYNPQ--------FHNVMRVTHAMYR-----ACNTSAPLATFTTGND---SITI-TAKGHHFFFCGVP 111 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~--------~HsV~~V~~~~Y~-----~C~~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~v~ 111 (190)
..+++.||+|+.+..++ -|-+.|-.....| .| +| ..|.+ .|++ ++.|++||=+-..
T Consensus 61 tI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI---~PG~sftY~F~~~dq~GT~WYHsH~~ 133 (596)
T PLN00044 61 ALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AI---PAGWNWTYQFQVKDQVGSFFYAPSTA 133 (596)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----Cc---CCCCcEEEEEEeCCCCceeEeeccch
Confidence 45789999999988664 2444433111122 23 22 23332 6778 4799999999888
Q ss_pred CCCCCCCeEEEEeecCC
Q 029659 112 GHCQSGQKVDINVLRTP 128 (190)
Q Consensus 112 ~HC~~GqKl~I~V~~~~ 128 (190)
.+-..|+.-.|.|....
T Consensus 134 ~Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 134 LHRAAGGYGAITINNRD 150 (596)
T ss_pred hhhhCcCeeEEEEcCcc
Confidence 88888999999887543
No 33
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=63.18 E-value=4.5 Score=28.26 Aligned_cols=31 Identities=35% Similarity=0.387 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHHHHhhcccccceEEEecCCC
Q 029659 1 MALLKIAVALLVMATLFAVPVSYAAVYKVGDSA 33 (190)
Q Consensus 1 m~~~~i~~~l~~~~~~~~~~~a~a~~~~VG~~~ 33 (190)
|+...++..|||+++.+ -...|-+|.-|+.-
T Consensus 1 MA~Kl~vialLC~aLva--~vQ~APQYa~GeeP 31 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA--IVQSAPQYAPGEEP 31 (65)
T ss_pred CcchhhHHHHHHHHHHH--HHhcCcccCCCCCC
Confidence 88888999999986544 34456788888864
No 34
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=60.23 E-value=29 Score=33.85 Aligned_cols=85 Identities=15% Similarity=0.337 Sum_probs=53.2
Q ss_pred CcccCCCCcccccCCCeEEeCCEEEEEeCCC---cccE------EEEcccc--cccCCCCCCCcccccCCc---EEEecc
Q 029659 35 WTTIGNIDYKQWAATKTFQVGDIIHFEYNPQ---FHNV------MRVTHAM--YRACNTSAPLATFTTGND---SITITA 100 (190)
Q Consensus 35 W~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~---~HsV------~~V~~~~--Y~~C~~s~~~~~~s~G~~---~v~L~~ 100 (190)
|++.+ ..|.. +...+++.||.+++.+.+. .|.+ +++...+ |.. ..+.+ ....|.+ .|..++
T Consensus 488 wtiNG-~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv-~V~Pg~t~~~~f~ad~ 562 (587)
T TIGR01480 488 WSFDG-EAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTV-DVPPGGKRSFRVTADA 562 (587)
T ss_pred EEECC-ccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCce-eeCCCCEEEEEEECCC
Confidence 88843 23443 2357899999999999874 2332 3342111 110 00111 1223333 577889
Q ss_pred cceEEEEcCCCCCCCCCCeEEEEe
Q 029659 101 KGHHFFFCGVPGHCQSGQKVDINV 124 (190)
Q Consensus 101 ~G~~YFiC~v~~HC~~GqKl~I~V 124 (190)
+|+++|=|-+..|=+.||--.+.|
T Consensus 563 pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 563 LGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CeEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999999887776
No 35
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=60.08 E-value=23 Score=28.60 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=17.0
Q ss_pred CCeEEeCCEEEEEeCCC----cccEEEE
Q 029659 49 TKTFQVGDIIHFEYNPQ----FHNVMRV 72 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~----~HsV~~V 72 (190)
...++.||.++|+.+.+ .|.|..+
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v 85 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEI 85 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEE
Confidence 45789999999998764 2445544
No 36
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=59.13 E-value=40 Score=26.84 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=25.9
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeecCC
Q 029659 95 SITITAKGHHFFFCGVPGHCQSGQKVDINVLRTP 128 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~~~~ 128 (190)
.+++.. |..|-|.. ..|..||++...+....
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g 130 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAG 130 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecC
Confidence 578874 99999996 69999999999887654
No 37
>PLN02835 oxidoreductase
Probab=58.64 E-value=80 Score=30.41 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=47.1
Q ss_pred CCeEEeCCEEEEEeCCC--------cccEEEEccccccc-CCCCCCCcccccCCc---EEEe-cccceEEEEcCCCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQ--------FHNVMRVTHAMYRA-CNTSAPLATFTTGND---SITI-TAKGHHFFFCGVPGHCQ 115 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~-C~~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~v~~HC~ 115 (190)
..+++.||+|+.+..++ -|-+.|-.....|. -...-++ ..|.+ .|++ +.+|+|||=|-...+-.
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI---~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~ 137 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPI---PPNSNYTYKFQTKDQIGTFTYFPSTLFHKA 137 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCC---CCCCcEEEEEEECCCCEeEEEEeCccchhc
Confidence 45799999999998764 24444432222222 0001122 33433 5666 57999999998777778
Q ss_pred CCCeEEEEeec
Q 029659 116 SGQKVDINVLR 126 (190)
Q Consensus 116 ~GqKl~I~V~~ 126 (190)
.|+.-.|-|..
T Consensus 138 ~Gl~G~lIV~~ 148 (539)
T PLN02835 138 AGGFGAINVYE 148 (539)
T ss_pred CcccceeEEeC
Confidence 89988888854
No 38
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.30 E-value=15 Score=30.77 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=25.5
Q ss_pred EEEecccceEEEEcCCCCCCCC---CCeEEEEeecCC
Q 029659 95 SITITAKGHHFFFCGVPGHCQS---GQKVDINVLRTP 128 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~---GqKl~I~V~~~~ 128 (190)
.++.+++|.|+..|.. .|.. .|++.|.|.+..
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 4567899999999985 7775 499999887653
No 39
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=53.29 E-value=15 Score=28.20 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=12.3
Q ss_pred CeEEeCCEEEEEeCC
Q 029659 50 KTFQVGDIIHFEYNP 64 (190)
Q Consensus 50 ~~F~vGD~LvF~y~~ 64 (190)
++|++||.|+|+=-.
T Consensus 30 ~~ikvGD~I~f~~~~ 44 (109)
T cd06555 30 QQIKVGDKILFNDLD 44 (109)
T ss_pred hcCCCCCEEEEEEcC
Confidence 589999999996543
No 40
>PLN02168 copper ion binding / pectinesterase
Probab=52.90 E-value=89 Score=30.21 Aligned_cols=76 Identities=13% Similarity=0.230 Sum_probs=47.5
Q ss_pred CCeEEeCCEEEEEeCCC--------cccEEEEccccccc-CCCCCCCcccccCCc---EEEec-ccceEEEEcCCCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQ--------FHNVMRVTHAMYRA-CNTSAPLATFTTGND---SITIT-AKGHHFFFCGVPGHCQ 115 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~-C~~s~~~~~~s~G~~---~v~L~-~~G~~YFiC~v~~HC~ 115 (190)
..+++.||+|+.+..++ -|-+.|-.....|. .....+| ..|.+ .|+++ .+|++||=+-...+=.
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI---~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~ 134 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPI---LPGTNWTYRFQVKDQIGSYFYFPSLLLQKA 134 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCC---CCCCcEEEEEEeCCCCceEEEecChhhhhh
Confidence 45799999999999764 24444432211222 0001122 23332 67884 7999999997766666
Q ss_pred CCCeEEEEeecC
Q 029659 116 SGQKVDINVLRT 127 (190)
Q Consensus 116 ~GqKl~I~V~~~ 127 (190)
.|+.-.|.|...
T Consensus 135 ~GL~G~lII~~~ 146 (545)
T PLN02168 135 AGGYGAIRIYNP 146 (545)
T ss_pred CcceeEEEEcCC
Confidence 799888888654
No 41
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=52.54 E-value=10 Score=28.44 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=4.3
Q ss_pred ChhHHHHH
Q 029659 1 MALLKIAV 8 (190)
Q Consensus 1 m~~~~i~~ 8 (190)
|+++..++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 78654333
No 42
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=50.97 E-value=20 Score=28.31 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=18.9
Q ss_pred CCCCCCCCCCccchhhhhhHHHHHHHHHHhhh
Q 029659 155 AGPSSSEAGSLRPFECLLGKVVLGMLAVAFFV 186 (190)
Q Consensus 155 p~p~ps~a~~~~~~~~~~~~~~~~~~~~~~~~ 186 (190)
+.|.+++..++.-+......+++++++++|++
T Consensus 8 ~~~~~~~~~~l~qv~~~L~lVl~lI~~~aWLl 39 (124)
T PRK11486 8 QSSAPVSGSPLLQVSGALIGIIALILAAAWLV 39 (124)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556665555555545555557788864
No 43
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=46.78 E-value=53 Score=26.39 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=27.8
Q ss_pred CeEEeCCEEEEEeCC-----CcccEEEEcccccccCCCCC
Q 029659 50 KTFQVGDIIHFEYNP-----QFHNVMRVTHAMYRACNTSA 84 (190)
Q Consensus 50 ~~F~vGD~LvF~y~~-----~~HsV~~V~~~~Y~~C~~s~ 84 (190)
...+.||++++.-.. ..|..+.+++..+-+|+-..
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 468999999986652 35999999888888899743
No 44
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=46.72 E-value=12 Score=26.81 Aligned_cols=13 Identities=46% Similarity=0.879 Sum_probs=11.0
Q ss_pred CCeEEeCCEEEEE
Q 029659 49 TKTFQVGDIIHFE 61 (190)
Q Consensus 49 ~~~F~vGD~LvF~ 61 (190)
.+.|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 5689999999885
No 45
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=42.80 E-value=44 Score=34.02 Aligned_cols=30 Identities=20% Similarity=0.032 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCccchhhhhh-HHHHHHHHHH
Q 029659 154 AAGPSSSEAGSLRPFECLLG-KVVLGMLAVA 183 (190)
Q Consensus 154 ~p~p~ps~a~~~~~~~~~~~-~~~~~~~~~~ 183 (190)
+-.-+|+..+...-+.+..+ |++|+.+++.
T Consensus 836 tTtTsps~ttt~~~i~g~i~iiv~LaAla~l 866 (872)
T COG3889 836 TTTTSPSQTTTGGGICGPIVIIVGLAALALL 866 (872)
T ss_pred eeeecccccccccccchHHHHHHHHHHHHHH
Confidence 33444444443333334432 2345545444
No 46
>PLN02191 L-ascorbate oxidase
Probab=41.46 E-value=50 Score=31.97 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=47.5
Q ss_pred CCeEEeCCEEEEEeCCCc---------ccEEEEccccccc-CCCCCCCcccccCCc---EEEecccceEEEEcCCCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQF---------HNVMRVTHAMYRA-CNTSAPLATFTTGND---SITITAKGHHFFFCGVPGHCQ 115 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~~---------HsV~~V~~~~Y~~-C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~v~~HC~ 115 (190)
..+++.||+|+.+..+.. |.+.+-....+|. -..+ ......|.+ .|+++++|+|||=|-...+-.
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt--q~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~ 132 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT--QCAINPGETFTYKFTVEKPGTHFYHGHYGMQRS 132 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc--cCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHh
Confidence 457999999999887642 2222211111121 0000 011233433 678889999999999988888
Q ss_pred CCCeEEEEeec
Q 029659 116 SGQKVDINVLR 126 (190)
Q Consensus 116 ~GqKl~I~V~~ 126 (190)
.||.-.|.|..
T Consensus 133 ~Gl~G~liV~~ 143 (574)
T PLN02191 133 AGLYGSLIVDV 143 (574)
T ss_pred CCCEEEEEEcc
Confidence 99998888864
No 47
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=41.06 E-value=20 Score=30.16 Aligned_cols=37 Identities=27% Similarity=0.670 Sum_probs=24.8
Q ss_pred eEEEecCCCCCcccCCCCcccccCCC----eEEeCCEEEEE
Q 029659 25 AVYKVGDSAGWTTIGNIDYKQWAATK----TFQVGDIIHFE 61 (190)
Q Consensus 25 ~~~~VG~~~GW~~~~~~~Y~~WA~~~----~F~vGD~LvF~ 61 (190)
..|-+-...||.+.+...-.-|..++ -|++||.|.|.
T Consensus 162 ~IYp~~sPGGW~iIGrTp~~lfd~~~~~p~ll~~GD~VrF~ 202 (202)
T TIGR00370 162 GVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKFV 202 (202)
T ss_pred EEEccCCCCcceEeeecchhhhCCCCCCCcccCCCCEEEeC
Confidence 34656667899987654434444443 48999999994
No 48
>PLN02792 oxidoreductase
Probab=39.68 E-value=94 Score=29.96 Aligned_cols=75 Identities=12% Similarity=0.250 Sum_probs=45.8
Q ss_pred CCeEEeCCEEEEEeCCC--------cccEEEEcccccccC-CCCCCCcccccCCc---EEEe-cccceEEEEcCCCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQ--------FHNVMRVTHAMYRAC-NTSAPLATFTTGND---SITI-TAKGHHFFFCGVPGHCQ 115 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~C-~~s~~~~~~s~G~~---~v~L-~~~G~~YFiC~v~~HC~ 115 (190)
..+++.||+|+.+..++ -|.+.|......|.= ...-+| ..|.+ .|++ +.+|++||=+-...+-.
T Consensus 48 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI---~PG~sftY~F~~~~q~GT~WYHsH~~~q~~ 124 (536)
T PLN02792 48 EIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPI---PPGKNYTYDFQVKDQVGSYFYFPSLAVQKA 124 (536)
T ss_pred cEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCcc---CCCCcEEEEEEeCCCccceEEecCcchhhh
Confidence 45799999999999765 244444321111210 000122 33433 6777 47999999998877767
Q ss_pred CCCeEEEEeec
Q 029659 116 SGQKVDINVLR 126 (190)
Q Consensus 116 ~GqKl~I~V~~ 126 (190)
.|+.-.+.|..
T Consensus 125 ~Gl~G~liI~~ 135 (536)
T PLN02792 125 AGGYGSLRIYS 135 (536)
T ss_pred cccccceEEeC
Confidence 78777776654
No 49
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=36.21 E-value=24 Score=25.06 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=12.8
Q ss_pred ccCCCeEEeCCEEEEEeCCC
Q 029659 46 WAATKTFQVGDIIHFEYNPQ 65 (190)
Q Consensus 46 WA~~~~F~vGD~LvF~y~~~ 65 (190)
-+..+.+++||.++|.+..+
T Consensus 68 Fv~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 68 FVRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHHCT--TT-EEEEEE-SS
T ss_pred HHHHcCCCCCCEEEEEEecC
Confidence 34577899999999999864
No 50
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.11 E-value=54 Score=27.86 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=24.2
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSG---QKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~G---qKl~I~V~~ 126 (190)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEEC
Confidence 4667899999999986 77765 888888864
No 51
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=36.08 E-value=15 Score=23.33 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=24.9
Q ss_pred EecCCCCCcccCCCCcccccCCCeEEeCCEEEEEeCCC
Q 029659 28 KVGDSAGWTTIGNIDYKQWAATKTFQVGDIIHFEYNPQ 65 (190)
Q Consensus 28 ~VG~~~GW~~~~~~~Y~~WA~~~~F~vGD~LvF~y~~~ 65 (190)
++|.+.+=++| .+|+....++.||.|.+.+..+
T Consensus 2 kvg~s~~v~iP-----k~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQVTIP-----KEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSEEEE------HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCceEECC-----HHHHHHcCCCCCCEEEEEEeCC
Confidence 56666555664 4677777899999999999876
No 52
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=35.56 E-value=22 Score=21.76 Aligned_cols=18 Identities=22% Similarity=0.741 Sum_probs=14.2
Q ss_pred cccccCCCeEEeCCEEEE
Q 029659 43 YKQWAATKTFQVGDIIHF 60 (190)
Q Consensus 43 Y~~WA~~~~F~vGD~LvF 60 (190)
|..|..++.-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 467888888888998865
No 53
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.24 E-value=60 Score=31.66 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=31.6
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeecCCC
Q 029659 95 SITITAKGHHFFFCGVPGHCQSGQKVDINVLRTPT 129 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~~~~~ 129 (190)
.|.+|.||..+|=|-+..|=..||++...|.....
T Consensus 506 rf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~ 540 (563)
T KOG1263|consen 506 RFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEE 540 (563)
T ss_pred EEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCc
Confidence 57899999999999999999999999999987653
No 54
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=34.82 E-value=63 Score=24.20 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=27.3
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSGQKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~~ 126 (190)
.+..+.+|.+.|=|=+..|=..||-..|.|..
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 46778899999999999999999999998864
No 55
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=33.82 E-value=2e+02 Score=23.58 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhh
Q 029659 176 VLGMLAVAFFVS 187 (190)
Q Consensus 176 ~~~~~~~~~~~~ 187 (190)
++..++++||+.
T Consensus 103 g~s~l~i~yfvi 114 (163)
T PF06679_consen 103 GLSALAILYFVI 114 (163)
T ss_pred HHHHHHHHHHHH
Confidence 333456666653
No 56
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=32.49 E-value=3.1e+02 Score=26.01 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=10.9
Q ss_pred cccccceEEEecCCCC
Q 029659 19 VPVSYAAVYKVGDSAG 34 (190)
Q Consensus 19 ~~~a~a~~~~VG~~~G 34 (190)
...+....|.||+..|
T Consensus 22 ~~~~~~~~~~vg~~~~ 37 (421)
T PRK09723 22 AGTDDNVSYIVGNYYG 37 (421)
T ss_pred ccccCceEEEEccccc
Confidence 3445677899998544
No 57
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=32.23 E-value=31 Score=26.98 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.5
Q ss_pred CeEEeCCEEEEEeCCCcc
Q 029659 50 KTFQVGDIIHFEYNPQFH 67 (190)
Q Consensus 50 ~~F~vGD~LvF~y~~~~H 67 (190)
++|++||.+.|-++...|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 479999999999998755
No 58
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=32.13 E-value=1.8e+02 Score=28.51 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=44.8
Q ss_pred CCeEEeCCEEEEEeCCCcccEEEE-cc-----ccccc-CCCCCCCcccccCCc---EEEecccceEEEEcCCCCCCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQFHNVMRV-TH-----AMYRA-CNTSAPLATFTTGND---SITITAKGHHFFFCGVPGHCQSGQ 118 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~~HsV~~V-~~-----~~Y~~-C~~s~~~~~~s~G~~---~v~L~~~G~~YFiC~v~~HC~~Gq 118 (190)
..+++.||.++.++.++...-..+ -. ...|. ...+. .....|.+ .|++..+|+|||=|-...+=+.|+
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DGvP~vt~--~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL 154 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQMDGVPGVSF--AGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGL 154 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcCCccccCCCcccc--cccCCCCeEEEEEECCCCeeEEEecCchhHhhccc
Confidence 457899999999997652211111 00 01111 11110 01123433 678889999999998777767799
Q ss_pred eEEEEeec
Q 029659 119 KVDINVLR 126 (190)
Q Consensus 119 Kl~I~V~~ 126 (190)
.-.|-|..
T Consensus 155 ~G~lIV~~ 162 (587)
T TIGR01480 155 YGPLIIDP 162 (587)
T ss_pred eEEEEECC
Confidence 87777754
No 59
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=31.31 E-value=1.3e+02 Score=28.69 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred eEEeCCEEEEEeCCC--------cccEEEEccccccc--CCCCCCCcccccCCcEEEe-cccceEEEEcCCCCCCCCCCe
Q 029659 51 TFQVGDIIHFEYNPQ--------FHNVMRVTHAMYRA--CNTSAPLATFTTGNDSITI-TAKGHHFFFCGVPGHCQSGQK 119 (190)
Q Consensus 51 ~F~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~--C~~s~~~~~~s~G~~~v~L-~~~G~~YFiC~v~~HC~~GqK 119 (190)
+++.||+|+.+..++ -|.+.|......|. .-..-+|....+=.-.|++ +.+|++||=|-. .+...|+.
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~-~~~~~Gl~ 115 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHI-SWLRATVY 115 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCc-hhhhccce
Q ss_pred EEEEeecCC
Q 029659 120 VDINVLRTP 128 (190)
Q Consensus 120 l~I~V~~~~ 128 (190)
-.|-|....
T Consensus 116 G~lIV~~~~ 124 (539)
T TIGR03389 116 GAIVILPKP 124 (539)
T ss_pred EEEEEcCCC
No 60
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=31.10 E-value=98 Score=30.24 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=41.8
Q ss_pred ccCCCeEEeCCEEEEEeCCCcccEEEEcccccccCCCCCC----Cc-ccccCCc-EEEecccceEEEEc
Q 029659 46 WAATKTFQVGDIIHFEYNPQFHNVMRVTHAMYRACNTSAP----LA-TFTTGND-SITITAKGHHFFFC 108 (190)
Q Consensus 46 WA~~~~F~vGD~LvF~y~~~~HsV~~V~~~~Y~~C~~s~~----~~-~~s~G~~-~v~L~~~G~~YFiC 108 (190)
=.++|+|..-|.+.|+|+.....++.+...+.|.-|.+-- +- .-.+|.+ .|.|.+.|+-|=+|
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 3467899999999999998767777766666665444321 10 1134555 68888888765333
No 61
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=30.42 E-value=38 Score=23.92 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=13.1
Q ss_pred eEEeCCEEEEEeCCC
Q 029659 51 TFQVGDIIHFEYNPQ 65 (190)
Q Consensus 51 ~F~vGD~LvF~y~~~ 65 (190)
+|++||.|.|.++.+
T Consensus 2 ~~~~Ge~v~~~~~~~ 16 (83)
T PF14326_consen 2 VYRVGERVRFRVTSN 16 (83)
T ss_pred cccCCCEEEEEEEeC
Confidence 689999999999865
No 62
>PLN02792 oxidoreductase
Probab=30.33 E-value=81 Score=30.39 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=30.2
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeecCC
Q 029659 95 SITITAKGHHFFFCGVPGHCQSGQKVDINVLRTP 128 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~~~~ 128 (190)
+|..|+||..+|=|-...|=..||.+.+.|....
T Consensus 474 Rf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~ 507 (536)
T PLN02792 474 YVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPT 507 (536)
T ss_pred EEEeeCCEEEeeeEcchhccccceEEEEEEccCC
Confidence 6789999999999999999999999999988543
No 63
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=29.98 E-value=1e+02 Score=18.26 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=21.2
Q ss_pred EEEecccceEEEEcCCCCCCCCCCe
Q 029659 95 SITITAKGHHFFFCGVPGHCQSGQK 119 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~GqK 119 (190)
...++..|.-||=.|+...|..|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4567888999999999999999974
No 64
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=29.01 E-value=83 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=22.5
Q ss_pred EEEecccceEEEEcCCCCCCCC---CCeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQS---GQKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~---GqKl~I~V~~ 126 (190)
.+..+++|.+|..|.. .|.. .|.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 3567889999999985 5654 4888887754
No 65
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.74 E-value=82 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=23.4
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSG---QKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~G---qKl~I~V~~ 126 (190)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 4678899999999985 66654 888887764
No 66
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=28.40 E-value=86 Score=19.63 Aligned_cols=28 Identities=39% Similarity=0.472 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhcccccceEEEecC
Q 029659 4 LKIAVALLVMATLFAVPVSYAAVYKVGD 31 (190)
Q Consensus 4 ~~i~~~l~~~~~~~~~~~a~a~~~~VG~ 31 (190)
..+++++++++++.+.....+++++=|+
T Consensus 4 l~~a~~l~lLal~~a~~~~pG~ViING~ 31 (36)
T PF08194_consen 4 LSLAFALLLLALAAAVPATPGNVIINGK 31 (36)
T ss_pred eHHHHHHHHHHHHhcccCCCCeEEECce
Confidence 3444444444323333344667776664
No 67
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.80 E-value=87 Score=26.63 Aligned_cols=30 Identities=10% Similarity=0.294 Sum_probs=23.4
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSG---QKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~G---qKl~I~V~~ 126 (190)
.++.+++|.+|..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVP 215 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 4677899999999985 67654 888887764
No 68
>PLN02991 oxidoreductase
Probab=27.47 E-value=2.3e+02 Score=27.47 Aligned_cols=84 Identities=11% Similarity=0.146 Sum_probs=0.0
Q ss_pred CeEEeCCEEEEEeCCC--------cccEEEEcccccccCCCCC-CCcccccCCcEEEe-cccceEEEEcCCCCCCCCCCe
Q 029659 50 KTFQVGDIIHFEYNPQ--------FHNVMRVTHAMYRACNTSA-PLATFTTGNDSITI-TAKGHHFFFCGVPGHCQSGQK 119 (190)
Q Consensus 50 ~~F~vGD~LvF~y~~~--------~HsV~~V~~~~Y~~C~~s~-~~~~~s~G~~~v~L-~~~G~~YFiC~v~~HC~~GqK 119 (190)
.+++.||+|+.+..++ -|-+.|......|.=-.++ +|....+=.-.|++ +.+|++||=+-...+-..|..
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 140 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGF 140 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCe
Q ss_pred EEEEeecCCCCCCCCCC
Q 029659 120 VDINVLRTPTTTDETAP 136 (190)
Q Consensus 120 l~I~V~~~~~t~~~~aP 136 (190)
-.|-|..... .+.|
T Consensus 141 G~lIV~~~~~---~~~p 154 (543)
T PLN02991 141 GAIRISSRPL---IPVP 154 (543)
T ss_pred eeEEEeCCcc---cCcc
No 69
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.05 E-value=87 Score=26.57 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=23.7
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSG---QKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~G---qKl~I~V~~ 126 (190)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeC
Confidence 4677899999999985 67654 888888764
No 70
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.90 E-value=85 Score=26.85 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=23.1
Q ss_pred EEEecccceEEEEcCCCCCCCC---CCeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQS---GQKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~---GqKl~I~V~~ 126 (190)
.+..+++|.||..|+. -|.. .|++.|.|..
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4567899999999986 5654 4888887764
No 71
>PTZ00213 asparagine synthetase A; Provisional
Probab=26.84 E-value=64 Score=29.67 Aligned_cols=25 Identities=32% Similarity=0.753 Sum_probs=17.0
Q ss_pred cceEEEecCCCCCcccC-------CCCcccccCC
Q 029659 23 YAAVYKVGDSAGWTTIG-------NIDYKQWAAT 49 (190)
Q Consensus 23 ~a~~~~VG~~~GW~~~~-------~~~Y~~WA~~ 49 (190)
.+++|+.| +||.... ..||++|.+.
T Consensus 196 ~gaVFi~~--IG~~L~~G~~Hd~RApDYDDW~t~ 227 (348)
T PTZ00213 196 YGAVFLIG--IGCKLSSGDTHDLRAPDYDDWSSP 227 (348)
T ss_pred hCcEEEEe--ccCcCCCCCcCCCCCCCccccccc
Confidence 45677776 5777642 2689999943
No 72
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.46 E-value=2.7e+02 Score=27.22 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=50.7
Q ss_pred CCeEEeCCEEEEEeCCC--------cccEEEEccccc-ccCCC-CCCCcccccCCc---EEEec-ccceEEEEcCCCCCC
Q 029659 49 TKTFQVGDIIHFEYNPQ--------FHNVMRVTHAMY-RACNT-SAPLATFTTGND---SITIT-AKGHHFFFCGVPGHC 114 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~~--------~HsV~~V~~~~Y-~~C~~-s~~~~~~s~G~~---~v~L~-~~G~~YFiC~v~~HC 114 (190)
......||+|+.+..+. -|-|.|- +..| |. .. ++ -....|.. .|+++ +.|++||.....-|-
T Consensus 60 ~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG-~~~Tq--CPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~R 135 (563)
T KOG1263|consen 60 TINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDG-VYITQ--CPIQPGENFTYRFTVKDQIGTLWYHSHVSWQR 135 (563)
T ss_pred eEEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccC-Ccccc--CCcCCCCeEEEEEEeCCcceeEEEeecccccc
Confidence 46789999999888653 2334333 2222 11 00 00 01233433 67888 899999999999999
Q ss_pred CCCCeEEEEeecCCC
Q 029659 115 QSGQKVDINVLRTPT 129 (190)
Q Consensus 115 ~~GqKl~I~V~~~~~ 129 (190)
..|+.-.+.|.....
T Consensus 136 a~G~~G~liI~~~~~ 150 (563)
T KOG1263|consen 136 ATGVFGALIINPRPG 150 (563)
T ss_pred ccCceeEEEEcCCcc
Confidence 999999999977654
No 73
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=26.30 E-value=63 Score=29.29 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=22.3
Q ss_pred cceEEEecCCCCCcccC-------CCCcccccCCCeEEeCCEEEEEe
Q 029659 23 YAAVYKVGDSAGWTTIG-------NIDYKQWAATKTFQVGDIIHFEY 62 (190)
Q Consensus 23 ~a~~~~VG~~~GW~~~~-------~~~Y~~WA~~~~F~vGD~LvF~y 62 (190)
.+++|+.| +||.... ..||++|. --||.|+.+-
T Consensus 185 ~gaVFi~~--IG~~L~~g~~Hd~RapDYDDW~-----LNGDil~w~~ 224 (309)
T cd00645 185 HGAVFIIG--IGGKLSDGKKHDGRAPDYDDWT-----LNGDILVWNP 224 (309)
T ss_pred hCcEEEEe--ccCcCCCCCcCCCCCCCCcCcc-----ccceEEEEch
Confidence 45677776 5666642 26899999 4589886544
No 74
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.03 E-value=95 Score=26.51 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=22.9
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSG---QKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~G---qKl~I~V~~ 126 (190)
.+..+++|.+|..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 4677899999999986 66654 787777654
No 75
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.00 E-value=98 Score=26.36 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=23.4
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSG---QKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~G---qKl~I~V~~ 126 (190)
.++.+++|.||-.|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 4678899999999986 66654 888887754
No 76
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=25.73 E-value=47 Score=23.08 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=15.2
Q ss_pred cccccCCCeEEeCCEEEEEeCCC
Q 029659 43 YKQWAATKTFQVGDIIHFEYNPQ 65 (190)
Q Consensus 43 Y~~WA~~~~F~vGD~LvF~y~~~ 65 (190)
..+-+.-..+++||.|.|.+...
T Consensus 34 v~~~~~l~~l~~Gd~V~F~~~~~ 56 (70)
T PF11604_consen 34 VADPVDLAGLKPGDKVRFTFERT 56 (70)
T ss_dssp --TTSEESS-STT-EEEEEEEEE
T ss_pred cCChhhhhcCCCCCEEEEEEEEC
Confidence 34555566899999999999864
No 77
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=25.36 E-value=1e+02 Score=26.29 Aligned_cols=30 Identities=10% Similarity=-0.055 Sum_probs=24.0
Q ss_pred EEEecccceEEEEcCCCCCCCC---CCeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQS---GQKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~---GqKl~I~V~~ 126 (190)
.++.+++|.|+-.|.. .|.. .|++.|.|..
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATD 214 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEEC
Confidence 4778899999999985 6765 4888888764
No 78
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.09 E-value=1.1e+02 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=23.4
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSG---QKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~G---qKl~I~V~~ 126 (190)
.++.+++|.||..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 4677899999999985 66654 888887764
No 79
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=24.73 E-value=37 Score=29.75 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCeEEeCCEE------EEEeCCCcccEEE-EcccccccCCCCC
Q 029659 49 TKTFQVGDII------HFEYNPQFHNVMR-VTHAMYRACNTSA 84 (190)
Q Consensus 49 ~~~F~vGD~L------vF~y~~~~HsV~~-V~~~~Y~~C~~s~ 84 (190)
+.+.+.||+. ||||...+.+|.. ++...|..|+..+
T Consensus 6 gs~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~~ 48 (249)
T PF11766_consen 6 GSNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQS 48 (249)
T ss_dssp TTT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE-
T ss_pred ccccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEecccC
Confidence 4588999987 7888877667744 4777888888654
No 80
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=24.30 E-value=40 Score=24.65 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=21.6
Q ss_pred CCeEEeCCEEEEEeCC-----CcccEEEE-cccccccCCCCCCCcccccCCcEEEecccceEEE
Q 029659 49 TKTFQVGDIIHFEYNP-----QFHNVMRV-THAMYRACNTSAPLATFTTGNDSITITAKGHHFF 106 (190)
Q Consensus 49 ~~~F~vGD~LvF~y~~-----~~HsV~~V-~~~~Y~~C~~s~~~~~~s~G~~~v~L~~~G~~YF 106 (190)
..-..+||.+.|.-.. +.-.|..| ++..|.--+.. ...++++..|.+|=
T Consensus 25 ~HGl~vGD~VnFsnsa~tGvSG~mTVatVid~ntFTVt~~~---------~q~~t~NnaG~~w~ 79 (83)
T PF12195_consen 25 DHGLFVGDFVNFSNSAVTGVSGNMTVATVIDANTFTVTTSN---------SQTSTFNNAGVNWN 79 (83)
T ss_dssp T----TT-EEEEES-SSTT--EEEEEEEEEETTEEEEE-S------------SS-EE-TT-EEE
T ss_pred cCceeecceEEEeccccccccccEEEEEEecCCcEEEecCC---------cccccccccceeee
Confidence 3457899999999865 24455555 55444322111 12456677787773
No 81
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=23.68 E-value=58 Score=22.22 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=18.9
Q ss_pred CcccccCCCeEEeCCEEEEEeC
Q 029659 42 DYKQWAATKTFQVGDIIHFEYN 63 (190)
Q Consensus 42 ~Y~~WA~~~~F~vGD~LvF~y~ 63 (190)
.-.+|+...+.++||.|+|...
T Consensus 27 ~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 27 SITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEecCCCcccCCCEEEEEEE
Confidence 3578899999999999998874
No 82
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=22.71 E-value=89 Score=27.42 Aligned_cols=37 Identities=30% Similarity=0.561 Sum_probs=18.9
Q ss_pred cceEEEecCCCCCcccC-------CCCcccccCC----CeEEeCCEEEEE
Q 029659 23 YAAVYKVGDSAGWTTIG-------NIDYKQWAAT----KTFQVGDIIHFE 61 (190)
Q Consensus 23 ~a~~~~VG~~~GW~~~~-------~~~Y~~WA~~----~~F~vGD~LvF~ 61 (190)
.+++|+.| +|+.... ..||++|... ..=--||.|+.+
T Consensus 191 ~gAVFi~g--IG~~L~~G~~Hd~RApDYDDW~t~~~~g~~GLNGDilvw~ 238 (244)
T PF03590_consen 191 YGAVFIIG--IGGKLSSGKPHDGRAPDYDDWSTPTEDGYHGLNGDILVWN 238 (244)
T ss_dssp HSEEEEE----SSB-SSSSBSS---TTTB--SSB-TTSSB-SEEEEEEEE
T ss_pred hCcEEEEe--cCCCCCCCCcCcCCCCCCcccccccccccCCCCccEEEec
Confidence 56788877 5666642 2589999932 122347887654
No 83
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=22.69 E-value=1.2e+02 Score=26.12 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=23.7
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSG---QKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~G---qKl~I~V~~ 126 (190)
.++.+++|.+|..|+. .|..| |++.|.|..
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVS 226 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEEC
Confidence 4677899999999985 67765 888887764
No 84
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=22.42 E-value=79 Score=25.28 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEecCCCCCcccCCCCcccccC-CCeEEeCCEEEEE
Q 029659 27 YKVGDSAGWTTIGNIDYKQWAA-TKTFQVGDIIHFE 61 (190)
Q Consensus 27 ~~VG~~~GW~~~~~~~Y~~WA~-~~~F~vGD~LvF~ 61 (190)
..|||+.|= .+..-|-. +..|+.||+|.|.
T Consensus 41 ~kVaD~Tgs-----I~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 41 CKVADETGS-----INISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEecccce-----EEEEEecCcCcccCCccEEEec
Confidence 468887761 12233432 5689999988664
No 85
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=22.39 E-value=1.1e+02 Score=25.61 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=24.5
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQSG---QKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~G---qKl~I~V~~ 126 (190)
.++-+++|.|+-.|+. .|-.| |++.|.|..
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~ 205 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVS 205 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeC
Confidence 5778899999999985 67764 899888864
No 86
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=22.33 E-value=2.2e+02 Score=18.41 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=25.9
Q ss_pred CCcEEEecccceEEEEcCCCCCCCCCCeEEEEeecC
Q 029659 92 GNDSITITAKGHHFFFCGVPGHCQSGQKVDINVLRT 127 (190)
Q Consensus 92 G~~~v~L~~~G~~YFiC~v~~HC~~GqKl~I~V~~~ 127 (190)
++..+-|+..|.+.-|=.-++ |+-||++.++....
T Consensus 5 ~~~aiVlT~dGeF~~ik~~~~-~~vG~eI~~~~~~~ 39 (56)
T PF12791_consen 5 KKYAIVLTPDGEFIKIKRKPG-MEVGQEIEFDEKDI 39 (56)
T ss_pred CCEEEEEcCCCcEEEEeCCCC-CcccCEEEEechhh
Confidence 455678888888766655555 99999999877543
No 87
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=22.07 E-value=2.7e+02 Score=19.32 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=14.8
Q ss_pred EEEEEeCCCcccEEEE-cccccc
Q 029659 57 IIHFEYNPQFHNVMRV-THAMYR 78 (190)
Q Consensus 57 ~LvF~y~~~~HsV~~V-~~~~Y~ 78 (190)
.++|+|..+.+.|..+ +...++
T Consensus 3 ~v~f~~~~~a~~V~v~G~F~~W~ 25 (79)
T cd02859 3 PTTFVWPGGGKEVYVTGSFDNWK 25 (79)
T ss_pred EEEEEEcCCCcEEEEEEEcCCCC
Confidence 3689998877777766 334443
No 88
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.02 E-value=2.2e+02 Score=28.06 Aligned_cols=8 Identities=38% Similarity=0.331 Sum_probs=5.6
Q ss_pred ceEEEecC
Q 029659 24 AAVYKVGD 31 (190)
Q Consensus 24 a~~~~VG~ 31 (190)
-..|.||.
T Consensus 82 ~~i~AVG~ 89 (656)
T PRK06975 82 LPVAVVGP 89 (656)
T ss_pred CeEEEECH
Confidence 35678885
No 89
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=21.97 E-value=1.1e+02 Score=21.50 Aligned_cols=39 Identities=28% Similarity=0.695 Sum_probs=28.4
Q ss_pred eEEEecCC---CCCcccC-----CCCcccccCCCeEEeCCEEEEEeC
Q 029659 25 AVYKVGDS---AGWTTIG-----NIDYKQWAATKTFQVGDIIHFEYN 63 (190)
Q Consensus 25 ~~~~VG~~---~GW~~~~-----~~~Y~~WA~~~~F~vGD~LvF~y~ 63 (190)
..+++|+. ..|.... ..++..|.....+..|+.+.|+|-
T Consensus 16 ~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 16 NVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 45889973 3587431 245778988888888999999995
No 90
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=21.81 E-value=85 Score=28.70 Aligned_cols=41 Identities=27% Similarity=0.550 Sum_probs=25.3
Q ss_pred cceEEEecCCCCCcccC-------CCCcccccCCCeEEeCCEEEEEeCCCcccEEEE
Q 029659 23 YAAVYKVGDSAGWTTIG-------NIDYKQWAATKTFQVGDIIHFEYNPQFHNVMRV 72 (190)
Q Consensus 23 ~a~~~~VG~~~GW~~~~-------~~~Y~~WA~~~~F~vGD~LvF~y~~~~HsV~~V 72 (190)
.+++|+.| +|+.... ..||++|. --||.|+.+-.-+ ..+++
T Consensus 195 ~gaVFi~~--IG~~L~~g~~Hd~RapDYDDW~-----LNGDilvw~~~l~--~a~EL 242 (327)
T PRK05425 195 YGAVFLIG--IGGKLSDGKPHDGRAPDYDDWG-----LNGDILVWNPVLD--DAFEL 242 (327)
T ss_pred hCcEEEEe--ccCcCCCCCcCCCCCCCCcCcc-----cCceEEEEccccC--ceeee
Confidence 45677776 5666642 26899996 3489886554332 44444
No 91
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=21.46 E-value=1.3e+02 Score=21.45 Aligned_cols=40 Identities=28% Similarity=0.602 Sum_probs=30.6
Q ss_pred eEEEecCCC---CCcccCC---------CCcccccCCCeEEeCCEEEEEeCC
Q 029659 25 AVYKVGDSA---GWTTIGN---------IDYKQWAATKTFQVGDIIHFEYNP 64 (190)
Q Consensus 25 ~~~~VG~~~---GW~~~~~---------~~Y~~WA~~~~F~vGD~LvF~y~~ 64 (190)
..|+||+.. .|..... .+|..|.....+..|..+.|+|--
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 458999863 4986311 257999999999999999999953
No 92
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=20.55 E-value=1.4e+02 Score=25.46 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=23.2
Q ss_pred EEEecccceEEEEcCCCCCCCC---CCeEEEEeec
Q 029659 95 SITITAKGHHFFFCGVPGHCQS---GQKVDINVLR 126 (190)
Q Consensus 95 ~v~L~~~G~~YFiC~v~~HC~~---GqKl~I~V~~ 126 (190)
.++.+++|.+|..|+. -|.. .|++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEEC
Confidence 4677899999999986 6665 4888887754
Done!