BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029661
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 350 bits (897), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/186 (90%), Positives = 179/186 (96%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct: 45 MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 104
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 105 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 164
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct: 165 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 224
Query: 181 TSKRPQ 186
TSKRP+
Sbjct: 225 TSKRPE 230
>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|B Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|C Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|D Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
Length = 230
Score = 267 bits (682), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 127/186 (68%), Positives = 154/186 (82%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPL+VDA+RP+T LDVHLMIVEPE+ V DF KAGADI+SVH E +++
Sbjct: 39 MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS 98
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
HLHRTL QI++LG KAG VLNP+T L +E VL V DL+LIMSVNPGFGGQSFI +
Sbjct: 99 PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLP 158
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI LR+MC E+G++PWIEVDGG+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++
Sbjct: 159 KIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR 218
Query: 181 TSKRPQ 186
SKRP+
Sbjct: 219 NSKRPE 224
>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|B Chain B, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|C Chain C, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|D Chain D, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|E Chain E, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|F Chain F, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|G Chain G, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|H Chain H, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|I Chain I, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|J Chain J, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|K Chain K, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|L Chain L, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
Length = 220
Score = 173 bits (439), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 125/182 (68%), Gaps = 2/182 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG+FVPNI+ G VV ++R + L D HLM+V+PE+ V F +AGADI+++H E ST
Sbjct: 38 MDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE--ST 95
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+H L +IK G KAGVV+NP T +A+E +LD+VD VLIM+VNPGFGGQ+FI ++
Sbjct: 96 RHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLE 155
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
K++ + + EKG++ IEVDGGV K EAGAN VAGS +F A D ++ ++
Sbjct: 156 KVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR 215
Query: 181 TS 182
T+
Sbjct: 216 TA 217
>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of
D-Ribulose-Phosphate 3- Epimerase From Francisella
Tularensis
Length = 246
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 106/181 (58%), Gaps = 3/181 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+T GP+V+ ALR +DVHLM+ + + F KAGA + H E S
Sbjct: 62 MDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASE 121
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
H+ R+L IK G +AG+ LNPAT + ++ V +D VLIMSVNPGFGGQ FI + +
Sbjct: 122 --HIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAML 179
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
K ++ + + +E+DGGV P N ++ G NA VAGSA+F + Y + I +
Sbjct: 180 DKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKM 239
Query: 180 K 180
+
Sbjct: 240 R 240
>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Y|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Z|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
pdb|1H1Z|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
Length = 228
Score = 126 bits (316), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIG V+ +LR T LD HLM+ P V KAGA + H E S
Sbjct: 41 MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD 100
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIES 117
+ + IK G + GV L P T + + +++ V+LVL+M+V PGFGGQ F+
Sbjct: 101 -NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPE 159
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
++K+ LR+ K + IEVDGG+GP AGAN +VAGS++FGA + E I
Sbjct: 160 MMEKVRALRK----KYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVIS 215
Query: 178 GIKTS 182
++ S
Sbjct: 216 ALRKS 220
>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe
pdb|3OVP|B Chain B, Crystal Structure Of Hrpe
pdb|3OVQ|A Chain A, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVQ|B Chain B, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVR|A Chain A, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
pdb|3OVR|B Chain B, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
Length = 228
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 58
MDG FVPNIT G VV++LR D D+H+M+ +PEQ V AGA+ + H E
Sbjct: 39 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE-- 96
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
+T + + I++ G K G+ + P TS+ + + +D+ L+M+V PGFGGQ F+E
Sbjct: 97 ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDM 156
Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
+ K+ LR IEVDGGVGP +K EAGAN +V+GSA+ ++D
Sbjct: 157 MPKVHWLRTQFPSLD----IEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSED 205
>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CTL|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
Length = 231
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 3/176 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+T+ P V ++ + PLD HLM+ P+ + +AGAD +++H E +
Sbjct: 34 MDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING 93
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
R +++I+ K G++LNP T + A++ + D + +M+V+PGF GQ FI +
Sbjct: 94 -QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLD 152
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
K+++L+ +G+ IEVDG K++ AGA+ + G++ G ++AE I
Sbjct: 153 KLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTS--GLFNHAENI 206
>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
pdb|3QC3|B Chain B, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
Length = 225
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 93/172 (54%), Gaps = 8/172 (4%)
Query: 2 DGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
DG FVPNIT G VV++LR D D H + +PEQ V AGA+ + H E +
Sbjct: 41 DGHFVPNITFGHPVVESLRKQLGQDPFFDXHXXVSKPEQWVKPXAVAGANQYTFHLE--A 98
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
T + + I++ G K G+ + P TS+ + + +D L+ +V PGFGGQ F E
Sbjct: 99 TENPGALIKDIRENGXKVGLAIKPGTSVEYLAPWANQIDXALVXTVEPGFGGQKFXEDXX 158
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
K+ LR IEVDGGVGP +K EAGAN +V+GSA+ ++D
Sbjct: 159 PKVHWLRTQFPSLD----IEVDGGVGPDTVHKCAEAGANXIVSGSAIXRSED 206
>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
pdb|1TQX|B Chain B, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
Length = 227
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 11/187 (5%)
Query: 1 MDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE--Q 57
MD FVPN++ GP V++ L+ T + DVHLM+ PE+ VP + ++ ++ H E
Sbjct: 40 MDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVP--LLKTSNQLTFHFEALN 97
Query: 58 SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFI 115
T + +I+D G+ + P T + + +LD +++ VL+M+V PGFGGQSF+
Sbjct: 98 EDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFM 157
Query: 116 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEA 175
+ K+S LR+ K N I+VDGG+ + GAN +VAG+++F A+D
Sbjct: 158 HDMMGKVSFLRK----KYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYV 213
Query: 176 IKGIKTS 182
I ++ S
Sbjct: 214 IDTMRVS 220
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 56 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 115
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 37 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 91
Query: 116 ESQVKKISDLRRMCLEKGV 134
E R C E+G+
Sbjct: 92 EQ-------FARRCAEEGI 103
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 56 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 115
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 37 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 91
Query: 116 ESQVKKISDLRRMCLEKGV 134
E R C E+G+
Sbjct: 92 EQ-------FARRCAEEGI 103
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 56 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 115
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 60 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 114
Query: 116 ESQVKKISDLRRMCLEKGV 134
E R C E+G+
Sbjct: 115 EQ-------FARRCAEEGI 126
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 56 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 115
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 37 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 91
Query: 116 ESQVKKISDLRRMCLEKGV 134
E R C E+G+
Sbjct: 92 EQ-------FARRCAEEGI 103
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 56 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 115
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 60 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 114
Query: 116 ESQVKKISDLRRMCLEKGV 134
E R C E+G+
Sbjct: 115 EQ-------FARRCAEEGI 126
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 56 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 115
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 60 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 114
Query: 116 ESQVKKISDLRRMCLEKGV 134
E R C E+G+
Sbjct: 115 EQ-------FARRCAEEGI 126
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 56 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 115
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 60 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 114
Query: 116 ESQVKKISDLRRMCLEKGV 134
E R C E+G+
Sbjct: 115 EQ-------FARRCAEEGI 126
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 97
+RV + +KA DI+ + S+ H R + IK + K + A ++ E LD++
Sbjct: 156 ERVEELVKAHVDILVI---DSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLI 212
Query: 98 DL---VLIMSVNPGFGGQSFIES-----QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKN 148
+ L + + PG + I + Q+ I D+ C N I DGG+ +
Sbjct: 213 SVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEAC--NNTNICIIADGGIRFSGD 270
Query: 149 AYKVIEAGANALVAGSAVFGAKD 171
K I AGA++++ G+ G K+
Sbjct: 271 VVKAIAAGADSVMIGNLFAGTKE 293
>pdb|1TYG|A Chain A, Structure Of The Thiazole SynthaseTHIS COMPLEX
pdb|1TYG|C Chain C, Structure Of The Thiazole SynthaseTHIS COMPLEX
Length = 253
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
VD G+G PK+A +E GA+ ++ +AV GA D + + +K
Sbjct: 181 VDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMK 222
>pdb|2XO6|A Chain A, Deinococcus Radiodurans Isdra2 Transposase Y132f Mutant
Complexed With Left End Recognition And Cleavage Site
pdb|2XO6|D Chain D, Deinococcus Radiodurans Isdra2 Transposase Y132f Mutant
Complexed With Left End Recognition And Cleavage Site
Length = 140
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 23/98 (23%)
Query: 25 LPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 83
+P VHL++ P+Q +PDF+KA + +S + Q+K+ G + NP
Sbjct: 64 MPDHVHLLLSATPQQAIPDFVKA--------LKGASARRMFVAYPQLKE-KLWGGNLWNP 114
Query: 84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 121
+ C+L V S N Q FIESQ K
Sbjct: 115 SY------CILTV-------SENTRAQIQKFIESQHDK 139
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 35 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK----DLGAKAGVVLNPATSLSAI 90
E +RV +KAG D++ + + + TL IK DL AG V P + + I
Sbjct: 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALI 296
Query: 91 ECVLDVVDLVLIMSVNPG 108
+ D V + V PG
Sbjct: 297 KAGADAVKV----GVGPG 310
>pdb|1XI3|A Chain A, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
pdb|1XI3|B Chain B, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
Length = 215
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
GG+ NA +V++ G + + SAV GA+D +A + ++
Sbjct: 169 GGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELR 207
>pdb|1YTD|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Native Structure
pdb|1YTE|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Phosphoribosylpyrophosphate Bound Structure
pdb|1YTK|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
With Nicotinate Mononucleotide
pdb|2I1O|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
Length = 398
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 138 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 187
I V GG+ K+ EAGA A G+++ AK + A+ ++ + +P+
Sbjct: 273 IMVSGGLDENTVKKLREAGAEAFGVGTSISSAKPFDFAMDIVEVNGKPET 322
>pdb|2XM3|A Chain A, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|B Chain B, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|C Chain C, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|D Chain D, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|E Chain E, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XM3|F Chain F, Deinococcus Radiodurans Isdra2 Transposase Left End Dna
Complex
pdb|2XQC|A Chain A, Deinococcus Radiodurans Isdra2 Transposase Complexed With
Left End Recognition And Cleavage Site And Zn
pdb|2XQC|D Chain D, Deinococcus Radiodurans Isdra2 Transposase Complexed With
Left End Recognition And Cleavage Site And Zn
Length = 140
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 23/98 (23%)
Query: 25 LPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 83
+P VHL++ P+Q +PDF+KA + +S + Q+K+ G + NP
Sbjct: 64 MPDHVHLLLSATPQQAIPDFVKA--------LKGASARRMFVAYPQLKE-KLWGGNLWNP 114
Query: 84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 121
+ C+L V S N Q +IESQ K
Sbjct: 115 SY------CILTV-------SENTRAQIQKYIESQHDK 139
>pdb|2XMA|A Chain A, Deinococcus Radiodurans Isdra2 Transposase Right End Dna
Complex
pdb|2XMA|B Chain B, Deinococcus Radiodurans Isdra2 Transposase Right End Dna
Complex
pdb|2XMA|E Chain E, Deinococcus Radiodurans Isdra2 Transposase Right End Dna
Complex
pdb|2XMA|F Chain F, Deinococcus Radiodurans Isdra2 Transposase Right End Dna
Complex
Length = 143
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 23/98 (23%)
Query: 25 LPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 83
+P VHL++ P+Q +PDF+KA + +S + Q+K+ G + NP
Sbjct: 67 MPDHVHLLLSATPQQAIPDFVKA--------LKGASARRMFVAYPQLKE-KLWGGNLWNP 117
Query: 84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 121
+ C+L V S N Q +IESQ K
Sbjct: 118 SY------CILTV-------SENTRAQIQKYIESQHDK 142
>pdb|3DIN|C Chain C, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|F Chain F, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 431
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 32 MIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA---------------- 75
+I +P + + K G I + +S+ +LHR LN++ +GA
Sbjct: 324 VIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGA 383
Query: 76 -KAGVVLNPATSLSAIECVLDVVD 98
K V + ++L A+ LD++
Sbjct: 384 IKVNVWIGGTSALIAVGVALDIIQ 407
>pdb|1XM3|A Chain A, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|B Chain B, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|C Chain C, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|D Chain D, Crystal Structure Of Northeast Structural Genomics Target
Sr156
Length = 264
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
VD G+G PK+A E GA+ ++ +AV GA D + + K
Sbjct: 183 VDAGIGSPKDAAYAXELGADGVLLNTAVSGADDPVKXARAXK 224
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or70
Length = 245
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 153 IEAGANALVAGSAVFGAKDYAE 174
I AG+ + G+A+FGA+DY++
Sbjct: 213 IAAGSTMVAIGTAIFGARDYSK 234
>pdb|2OO6|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
pdb|3GO2|A Chain A, Crystal Structure Of Putative L-alanine-dl-glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium
Length = 409
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 127 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEA 175
++ ++G+ W E D G G VIE LV S + + +AEA
Sbjct: 24 KLTTDEGIVGWSEFDEGFGSPGVTAVIEQLGKRLVGASVMEHERFFAEA 72
>pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs
Length = 234
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 153 IEAGANALVAGSAVFGAKDYAE 174
I AG+ + G+A+FGA+DY++
Sbjct: 212 IAAGSTMVRIGTAIFGARDYSK 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,528,443
Number of Sequences: 62578
Number of extensions: 222106
Number of successful extensions: 650
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 43
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)