BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029661
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 280
Score = 358 bits (919), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 173/190 (91%), Positives = 183/190 (96%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct: 91 MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 150
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 151 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 210
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct: 211 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 270
Query: 181 TSKRPQAVAV 190
TSKRP+AVAV
Sbjct: 271 TSKRPEAVAV 280
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea
GN=RPE PE=1 SV=1
Length = 285
Score = 355 bits (912), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 175/190 (92%), Positives = 180/190 (94%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +ST
Sbjct: 96 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELAST 155
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
IHLHRT+NQIK LGAKAGVVLNP T LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 156 IHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVK 215
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KISDLR+MC+EKGVNPWIEVDGGV P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK
Sbjct: 216 KISDLRKMCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 275
Query: 181 TSKRPQAVAV 190
SKRP+ VAV
Sbjct: 276 ASKRPEPVAV 285
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa
subsp. japonica GN=RPE PE=1 SV=2
Length = 274
Score = 354 bits (909), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 173/188 (92%), Positives = 182/188 (96%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST
Sbjct: 85 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 144
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
IHLHRT+NQIK LGAKAGVVLNPAT L+AI+ VLDVVDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 145 IHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVK 204
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI++LRR+C EKGVNPWIEVDGGVGPKNAYKVIEAGANA+VAGSAVFGA DYAEAIKGIK
Sbjct: 205 KIAELRRLCAEKGVNPWIEVDGGVGPKNAYKVIEAGANAIVAGSAVFGAPDYAEAIKGIK 264
Query: 181 TSKRPQAV 188
TS++P AV
Sbjct: 265 TSQKPVAV 272
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpe PE=1 SV=3
Length = 230
Score = 267 bits (682), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 127/186 (68%), Positives = 154/186 (82%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPL+VDA+RP+T LDVHLMIVEPE+ V DF KAGADI+SVH E +++
Sbjct: 39 MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS 98
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
HLHRTL QI++LG KAG VLNP+T L +E VL V DL+LIMSVNPGFGGQSFI +
Sbjct: 99 PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLP 158
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI LR+MC E+G++PWIEVDGG+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++
Sbjct: 159 KIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR 218
Query: 181 TSKRPQ 186
SKRP+
Sbjct: 219 NSKRPE 224
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis (strain 168)
GN=rpe PE=3 SV=1
Length = 217
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/184 (63%), Positives = 138/184 (75%), Gaps = 3/184 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPNITIGPL+V+A+RPVTDLPLDVHLMI EP++ +P F KAGADI+SVH E
Sbjct: 36 MDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAEACP- 94
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
HLHRT+ IK+ G KAGVVLNP T + IE V D +DLVL+M+VNPGFGGQ FI S +
Sbjct: 95 -HLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLP 153
Query: 121 KISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
KI +++RM EKG + IEVDGGV + A VIEAGAN LVAGSAV+G D +AI I
Sbjct: 154 KIKEVKRMADEKGKKDLLIEVDGGVNKETAPLVIEAGANLLVAGSAVYGQSDRKKAISEI 213
Query: 180 KTSK 183
+ SK
Sbjct: 214 RGSK 217
>sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5)
GN=rpe PE=3 SV=1
Length = 222
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 123/183 (67%), Gaps = 6/183 (3%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPNIT G ++ +R LP+D HLMI P++ +P F++AGA+ +SVH E +
Sbjct: 36 MDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE--NN 93
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+HRTL IK+LGAKAGVV+NP TSLSAIE L D VL+MSVNPGF GQ FIE ++
Sbjct: 94 YHIHRTLQLIKELGAKAGVVVNPGTSLSAIEEALYYADYVLLMSVNPGFSGQKFIERSIE 153
Query: 121 KISDLRRMCLEKGVNP--WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
++ L+ M +NP IE+DGG+ N +V+ AGA+ +V GS +FGAKD +
Sbjct: 154 RLRILKEM--RDRINPSCLIEIDGGIKENNIAEVVRAGADVVVVGSGIFGAKDIEAQTRK 211
Query: 179 IKT 181
+K+
Sbjct: 212 LKS 214
>sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rpe PE=3 SV=1
Length = 224
Score = 172 bits (437), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 89/182 (48%), Positives = 121/182 (66%), Gaps = 3/182 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+T GP V ALR P+DVHLM+ ++ +PDF KAGA+ ++ H E S
Sbjct: 38 MDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSE 97
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
H+ R+L I+D G K+G+V NPA LS ++ VLD VD+VL+MSVNPGFGGQSFI + +
Sbjct: 98 --HIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATL 155
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
KK+ R++ E G + +EVDGGV N ++ AGA+ VAGSA+FG DY + I I
Sbjct: 156 KKLQQARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQI 215
Query: 180 KT 181
+T
Sbjct: 216 RT 217
>sp|Q04539|RPEP_CUPNH Ribulose-phosphate 3-epimerase, plasmid OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEP PE=3 SV=1
Length = 241
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/192 (47%), Positives = 122/192 (63%), Gaps = 6/192 (3%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MD +V N+TIGPLV +A+RP+ +P+DVHLM+ + +P F KAGA+++S H E S
Sbjct: 50 MDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR- 108
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+ RT+ I+D G KAG+VLNPAT LS ++ LD +DLVL+MSVNPGFGGQ+FI +
Sbjct: 109 -HVDRTIGLIRDHGCKAGLVLNPATPLSWLDHTLDKLDLVLLMSVNPGFGGQAFIPGVLD 167
Query: 121 KISDLR----RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
K+ R R G W+E+DGGV N ++ AGA+ VAGSAVFGA D
Sbjct: 168 KVRQARARIDRQVAAGGRPVWLEIDGGVKADNITEIARAGADTFVAGSAVFGAPDADGGY 227
Query: 177 KGIKTSKRPQAV 188
+GI R A
Sbjct: 228 RGILHRLREAAT 239
>sp|P40117|RPEC_CUPNH Ribulose-phosphate 3-epimerase, chromosomal OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEC PE=3 SV=1
Length = 241
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 116/175 (66%), Gaps = 6/175 (3%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MD +VPN+TIGPLV +A+RP+ +P+DVHLM+ + +P F KAGA+I+S H E S
Sbjct: 50 MDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR- 108
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+ RT+ I+D G KAG+VLNPAT L ++ LD +DLVL+MSVNPGFGGQ+FI +
Sbjct: 109 -HVDRTIGLIRDHGCKAGLVLNPATPLGWLDHTLDQLDLVLLMSVNPGFGGQAFIPGVLD 167
Query: 121 KISDLR----RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
K+ R R G W+E+DGGV N + AGA+ VAGSAVFGA D
Sbjct: 168 KVRQARARIDRQVDAGGRPVWLEIDGGVKADNIAAIARAGADTFVAGSAVFGAPD 222
>sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3
SV=1
Length = 225
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+TIGP+V+ +LR P+DVHLM+ ++ VPDF AGA I++ H E S
Sbjct: 38 MDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE 97
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
H+ RTL IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI +
Sbjct: 98 --HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTL 155
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
K+ ++RR E G + +EVDGGV N ++ AGA+ VAGSA+F DY + I +
Sbjct: 156 DKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEM 215
Query: 180 KTS 182
++
Sbjct: 216 RSE 218
>sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=rpe PE=1 SV=1
Length = 225
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+TIGP+V+ +LR P+DVHLM+ ++ VPDF AGA I++ H E S
Sbjct: 38 MDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE 97
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
H+ RTL IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI +
Sbjct: 98 --HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTL 155
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
K+ ++RR E G + +EVDGGV N ++ AGA+ VAGSA+F DY + I +
Sbjct: 156 DKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEM 215
Query: 180 KTS 182
++
Sbjct: 216 RSE 218
>sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rpe PE=3 SV=1
Length = 225
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+TIGP+V+ +LR P+DVHLM+ ++ VPDF AGA I++ H E S
Sbjct: 38 MDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE 97
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
H+ RTL IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI +
Sbjct: 98 --HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTL 155
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
K+ ++RR E G + +EVDGGV N ++ AGA+ VAGSA+F DY + I +
Sbjct: 156 DKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEM 215
Query: 180 KTS 182
++
Sbjct: 216 RSE 218
>sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe
PE=3 SV=1
Length = 225
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 122/183 (66%), Gaps = 3/183 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+TIGP+V+ +LR P+DVHLM+ ++ VPDF AGA I++ H E S
Sbjct: 38 MDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE 97
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
H+ RTL IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI +
Sbjct: 98 --HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTL 155
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
K+ ++RR E G + +EVDGGV N ++ AGA+ VAGSA+F DY + I +
Sbjct: 156 DKLREVRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEM 215
Query: 180 KTS 182
++
Sbjct: 216 RSE 218
>sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3
SV=1
Length = 210
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 118/173 (68%), Gaps = 3/173 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+TIGP+V +ALR P+DVHLM+ ++ VPDF KAGA +S H E S
Sbjct: 38 MDNHYVPNLTIGPMVCEALRNYGITAPIDVHLMVKPVDRIVPDFAKAGASYISFHPEASE 97
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
H+ RT+ IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGGQSFI +
Sbjct: 98 --HVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTL 155
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY 172
K+ +R++ + G + +EVDGGV N ++ AGA+ VAGSA+FG DY
Sbjct: 156 DKLRQVRKLIDDSGRDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGQPDY 208
>sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=rpe PE=3 SV=1
Length = 228
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 117/173 (67%), Gaps = 3/173 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+T+GP+++ ALR +P+DVHLM+ + +P F +AGAD ++ H E S
Sbjct: 38 MDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPE--S 95
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
T H+ RTLN IK+ G KAG+ LNPATSL+ ++ V++ +DL+L+MSVNPGFG QSF+ +
Sbjct: 96 TDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSF 155
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY 172
K+ ++R+ N +EVDGGV +N +V +GAN V GS +FG DY
Sbjct: 156 NKLREVRKKIELNSSNILLEVDGGVKLENISEVAFSGANVFVIGSGIFGYTDY 208
>sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE
PE=3 SV=2
Length = 225
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 119/184 (64%), Gaps = 13/184 (7%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MD +VPN+T+GPLV ALRP T LP+DVHLM + + F +AGAD+++ H E S
Sbjct: 39 MDNHYVPNLTVGPLVCAALRPHTSLPIDVHLMTRPVDPLIDSFAEAGADMITFHPEASD- 97
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+HR++ I+ G KAGV LNPA+ LS ++ +L+ +DLVLIMSVNPGFGGQSFI S +
Sbjct: 98 -HVHRSVQMIRKRGLKAGVALNPASPLSLLDHILEDLDLVLIMSVNPGFGGQSFIPSALP 156
Query: 121 KISDL----RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
KI+ L RR C VDGGV P +A + GA+ LV A+FGA D A+AI
Sbjct: 157 KIAALANGRRRACRGD------RVDGGVNPADARALARPGADILVR-LAIFGASDRAKAI 209
Query: 177 KGIK 180
I+
Sbjct: 210 ASIR 213
>sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=rpe PE=3 SV=1
Length = 228
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 118/182 (64%), Gaps = 4/182 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MD FVPN+T+G VV++L TD PLD HLMI P++ P +++AGA V+ H E ++
Sbjct: 35 MDNHFVPNLTLGVPVVESLARATDTPLDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAA 94
Query: 61 -IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
+ L R +I+ GA+A + L PAT + E +L +D++LIM+V PGFGGQ+F++ +
Sbjct: 95 PVRLAR---EIRAKGARASMALKPATPVEPYEDLLPELDMLLIMTVEPGFGGQAFLDIML 151
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
KI R + + G+ W++VDGGV + +AGA+ VAGSAV+GA D AEA++ +
Sbjct: 152 PKIRRTRELIKKHGLELWLQVDGGVSAATIERCADAGADVFVAGSAVYGASDPAEAVRAL 211
Query: 180 KT 181
+T
Sbjct: 212 RT 213
>sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpe PE=3 SV=1
Length = 228
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 117/181 (64%), Gaps = 3/181 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+++GP+++++LR P+DVHLM+ + +P F KAGA ++ H E +
Sbjct: 38 MDNHYVPNLSMGPMILESLRNYNITAPIDVHLMVKPVDNLIPQFAKAGATFITFHPE--A 95
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
T+H+ RTLN IK+ G KAG+ NPAT L+ ++ +L+ +DL+L+MSVNPGFG QSF+ S
Sbjct: 96 TLHIERTLNLIKENGCKAGLAFNPATPLNFLDYILEKLDLILLMSVNPGFGNQSFLPSTF 155
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
K+ ++R++ + +EVDGGV N + AGAN V GS +F +Y I+ I
Sbjct: 156 NKLREVRKIIDANFSDILLEVDGGVKLDNIADIACAGANVFVMGSGLFKYSNYKLVIEKI 215
Query: 180 K 180
+
Sbjct: 216 R 216
>sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema pallidum (strain
Nichols) GN=rpe PE=3 SV=1
Length = 218
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+T G V+ LR T LP DVHLM+ P + DF++AGAD ++ H E +
Sbjct: 39 MDGHFVPNLTFGAPVLRCLRSKTHLPFDVHLMVSRPADLIEDFVQAGADFLTFHIE--AE 96
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
+H HR ++ I+ G K G+ L P+T ++A+ VL VDLVL+M+VNPGF GQ I +
Sbjct: 97 VHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPFVDLVLVMTVNPGFSGQQMIAHCLS 156
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
K+S L +M E+G + I VDGG+ + + ++AGA+ +V+GSA F
Sbjct: 157 KVSALVQMRTERGYSYMISVDGGIDCRTLPQALDAGADVIVSGSAFF 203
>sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain J99)
GN=rpe PE=3 SV=1
Length = 217
Score = 146 bits (369), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 119/189 (62%), Gaps = 6/189 (3%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG +VPN+T+GP++++ + ++ +PLDVHLM+ V F I+S+H E
Sbjct: 33 MDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEK- 91
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H HR L IK G G+VLNP T +I+ +L+ V LVL+MSVNPGFGGQ F++ ++
Sbjct: 92 -HPHRVLQLIKSSGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLE 150
Query: 121 KISDLRRMCLEKGVNP--WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
K ++ + K NP +EVDGGV KN +++ +AG + +V+GS +F +KD AI+G
Sbjct: 151 KCLKVKELI--KRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFESKDRKLAIEG 208
Query: 179 IKTSKRPQA 187
++ ++P A
Sbjct: 209 LQNVRQPLA 217
>sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rpe PE=3 SV=1
Length = 217
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 119/189 (62%), Gaps = 6/189 (3%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG +VPN+T+GP+V++ + ++ +PLDVHLM+ F I+S+H E
Sbjct: 33 MDGHYVPNLTMGPVVLENVTQMSQVPLDVHLMVENASFFAELFAPLKPQIISIHAENEK- 91
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H HR L IK+LG G+VLNP T +I+ +L+ V LVL+MSVNPGFGGQ F++ ++
Sbjct: 92 -HPHRVLQLIKNLGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKFLDLVLE 150
Query: 121 KISDLRRMCLEKGVNP--WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
K ++ + K NP +EVDGGV KN +++ +AG + +V+GS +F +KD AI+G
Sbjct: 151 KCLKVKELI--KRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFKSKDRKLAIEG 208
Query: 179 IKTSKRPQA 187
++ ++ A
Sbjct: 209 LQNVRQSLA 217
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE
PE=3 SV=2
Length = 228
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+T GP V A R +DVHLMI + + + +AGAD+++ H E
Sbjct: 41 MDGHFVPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP- 99
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+HRTL I+ G K+GV +NP T AIE VLD+ D+V +M+VNPGFGGQ +I+
Sbjct: 100 -HIHRTLQAIRAAGMKSGVAINPGTPAEAIEHVLDIADVVCVMTVNPGFGGQKYID-MTA 157
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
K+ LR M ++ V+ IE+DGG+ P A + AGA+ VAGS VF
Sbjct: 158 KVRKLRAMIGDRPVH--IEIDGGMDPVTAPLMAAAGADVFVAGSGVF 202
>sp|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rpe PE=3 SV=1
Length = 234
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 111/182 (60%), Gaps = 4/182 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPNI++G + ++ +T+LP++VHLM+ + V +F D ++ H E +
Sbjct: 36 MDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEF--EEMDYITFHIE--AV 91
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
R +N+IK +GAK V LNPAT L AIE +L V VL+M+V PGF GQ FI K
Sbjct: 92 KFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTK 151
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI L+ M +E G + I VDGG+ + A ++AGA+ LVA SA+FG D A+K ++
Sbjct: 152 KIRKLKSMIVENGYDTKIFVDGGINVETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLR 211
Query: 181 TS 182
+
Sbjct: 212 EA 213
>sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rpe PE=3 SV=1
Length = 228
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 108/183 (59%), Gaps = 5/183 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 57
MD +V N+T GP+V+++LR V + +DVHLM + + F K +I+S H E
Sbjct: 38 MDNHYVKNLTFGPIVLESLRSVEKIKSMVIDVHLMTCPVDDLIIKFAKLDVNIISFHPE- 96
Query: 58 SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 117
ST ++ +T+ IK G K G+ LNP T L ++ VLD +DL+L+MSVNPGF GQ FI S
Sbjct: 97 -STNNVEKTIKLIKSYGCKVGLALNPLTPLCVLDNVLDKIDLILLMSVNPGFPGQKFIPS 155
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
+ KI +R + + N +EVDGG+ N +K+ G + V GSA+F + +Y I+
Sbjct: 156 ILNKIRIVRELIDKSKKNILLEVDGGINLSNIFKIASFGTDIFVIGSAIFNSINYDLTIR 215
Query: 178 GIK 180
+
Sbjct: 216 SFR 218
>sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=rpe PE=3 SV=1
Length = 228
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 4/169 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPNIT GP ++ A+ TDL L+VH MI P + V F+KAGAD + VH E +
Sbjct: 40 MDGHFVPNITFGPGIIAAINRSTDLFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAE- 98
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
+L L+ I+ G +AG+ +P TS+ I + + D++L+MSV PGF GQ FI ++
Sbjct: 99 -NLKEILDYIRKCGVQAGIAFSPETSIEFISAFIPLCDVILLMSVQPGFCGQKFIPDTIE 157
Query: 121 KISDLRR--MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
KI +R+ L K + IEVDGG+ ++A EAGA+ LVA S F
Sbjct: 158 KIRFVRQAIQTLGKEGSCLIEVDGGIDEESARACREAGADILVAASYFF 206
>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe
PE=3 SV=1
Length = 229
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 101/169 (59%), Gaps = 4/169 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIG VV++L VTD+P+D HLMI P++ P + +AGA V+ H E +
Sbjct: 40 MDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAEATDN 99
Query: 61 -IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
+ + R I+ GAKAG+ + P T L +L D +L+MSV PGFGGQ FI +
Sbjct: 100 PVGVAR---DIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVMSVEPGFGGQRFIPEVL 156
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 168
K+ +R+M + +E+DGG+ + EAG + VAGSAV+G
Sbjct: 157 SKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYG 205
>sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rpe PE=3 SV=1
Length = 229
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 101/169 (59%), Gaps = 4/169 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIG VV++L VTD+P+D HLMI P++ P + +AGA V+ H E +
Sbjct: 40 MDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAEATDN 99
Query: 61 -IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
+ + R I+ GAKAG+ + P T L +L D +L+MSV PGFGGQ FI +
Sbjct: 100 PVGVAR---DIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVMSVEPGFGGQRFIPEVL 156
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 168
K+ +R+M + +E+DGG+ + EAG + VAGSAV+G
Sbjct: 157 SKVRAVRKMVDAGELTILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYG 205
>sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae (strain TN)
GN=rpe PE=3 SV=1
Length = 224
Score = 127 bits (318), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIG VV +L +D+P+D HLMI P++ P + +AGA V+ H E +T
Sbjct: 35 MDGHFVPNLTIGLPVVQSLLAASDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--AT 92
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
+ + I+ GAKAG+ + P T L+ +L D +LIMSV PGFGGQ+FI +
Sbjct: 93 DNPVGVAHDIRTAGAKAGIGVKPGTPLNPYLDILPHFDTLLIMSVEPGFGGQAFIPEVLS 152
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 168
K+ +R+M + +E+DGG+ + EAG + VAGSAV+G
Sbjct: 153 KVRTVRKMVDAGELTILVEIDGGINADTIEQAAEAGVDCFVAGSAVYG 200
>sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpe PE=3 SV=1
Length = 233
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 4/169 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPNIT GP VV A+ T+L L+VH MI P + V F+KAGAD + VH E +
Sbjct: 45 MDGHFVPNITFGPGVVAAINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAEN 104
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
I ++ I+ G +AGV +P TS+ + + + D++L+MSV+PGF GQ FI ++
Sbjct: 105 I--KEIISYIQKCGVQAGVAFSPETSIEFVTSFIPLCDVILLMSVHPGFCGQKFIPDTIE 162
Query: 121 KISDLRR--MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
+I +++ L + + IEVDGG+ ++A EAGA+ LVA S F
Sbjct: 163 RIQFVKQAIQVLGREGSCLIEVDGGIDKESARACREAGADILVAASYFF 211
>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa
subsp. japonica GN=Os09g0505700 PE=1 SV=1
Length = 228
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIG V+ +LR T LD HLM+ P V KAGA + H E S
Sbjct: 41 MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD 100
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIES 117
+ + IK G + GV L P T + + +++ V+LVL+M+V PGFGGQ F+
Sbjct: 101 -NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPE 159
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
++K+ LR+ K + IEVDGG+GP AGAN +VAGS++FGA + E I
Sbjct: 160 MMEKVRALRK----KYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVIS 215
Query: 178 GIKTS 182
++ S
Sbjct: 216 ALRKS 220
>sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3
SV=1
Length = 229
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+T GP ++ A+ TDL L+VH MI P + + F+++GAD + VH E S
Sbjct: 41 MDGHFVPNLTFGPGIIAAINRSTDLFLEVHAMIYNPFEFIESFVRSGADRIIVHFEASED 100
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
I L+ IK G +AG+ +P TS+ + L D+V++MSV PGF GQSF+ + ++
Sbjct: 101 I--KELLSYIKKCGVQAGLAFSPDTSIEFLPSFLPFCDVVVLMSVYPGFTGQSFLPNTIE 158
Query: 121 KISDLRRMCLEKGV--NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYA 173
KI+ R G+ + IEVDGG+ ++A +AGA+ LV S +F A A
Sbjct: 159 KIAFARHAIKTLGLKDSCLIEVDGGIDQQSAPLCRDAGADILVTASYLFEADSLA 213
>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1
Length = 228
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 58
MDG FVPNIT G VV++LR D D+H+M+ +PEQ V AGA+ + H E
Sbjct: 39 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE-- 96
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
+T + + I++ G K G+ + P TS+ + + +D+ L+M+V PGFGGQ F+E
Sbjct: 97 ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDM 156
Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
+ K+ LR IEVDGGVGP +K EAGAN +V+GSA+ ++D
Sbjct: 157 MPKVHWLRTQFPSLD----IEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSED 205
>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1
Length = 228
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 58
MDG FVPNIT G VV++LR D D+H+M+ +PEQ V AGA+ + H E
Sbjct: 39 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYAFHLE-- 96
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
+T + + I++ G K G+ + P TS+ + + +D+ L+M+V PGFGGQ F+E
Sbjct: 97 ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDM 156
Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
+ K+ LR IEVDGGVGP +K EAGAN +V+GSA+ ++D
Sbjct: 157 MPKVHWLRTQFPSLD----IEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSED 205
>sp|P32719|ALSE_ECOLI D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=alsE PE=1 SV=1
Length = 231
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 3/176 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+T+ P V ++ + PLD HLM+ P+ + +AGAD +++H E +
Sbjct: 34 MDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING 93
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
R +++I+ K G++LNP T + A++ + D + +M+V+PGF GQ FI +
Sbjct: 94 -QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLD 152
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
K+++L+ +G+ IEVDG K++ AGA+ + G++ G ++AE I
Sbjct: 153 KLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTS--GLFNHAENI 206
>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1
Length = 228
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 104/185 (56%), Gaps = 9/185 (4%)
Query: 1 MDGRFVPNITIGPLVVDALR---PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 57
MD +FVPN+TIGP+VV A+R + D HLM++EPE+ + AGA + H E
Sbjct: 38 MDAQFVPNLTIGPIVVKAMRNHYTKEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYE- 96
Query: 58 SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 117
+T +++ + G G L P T + I ++ +D+VL+M+V PG GGQSF+
Sbjct: 97 -ATEKHEEIISRAHEKGMLVGCALKPKTPVEVILPFVEKLDMVLVMTVEPGKGGQSFMPE 155
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
+ K+ LR+ K +EVDGG+ K +AGAN +VAG+AVF A+ E I
Sbjct: 156 CLPKVEFLRK----KYPTLNVEVDGGLSLKTVDAAADAGANVIVAGTAVFHAQSPEEVIS 211
Query: 178 GIKTS 182
G++ S
Sbjct: 212 GLRNS 216
>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1
Length = 238
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 105/194 (54%), Gaps = 21/194 (10%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLP-------------LDVHLMIVEPEQRVPDFIKAG 47
MDG FVPNIT+G +V +LR P D H+M+ PE+ V DF K G
Sbjct: 38 MDGHFVPNITLGQPIVTSLRRSVPRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCG 97
Query: 48 ADIVSVHCEQSST-IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVN 106
AD + H E + +HL + IK G KA + P TS+ + + +D+ L+M+V
Sbjct: 98 ADQFTFHYEATQDPLHL---VKLIKSKGIKAACAIKPGTSVDVLFELAPHLDMALVMTVE 154
Query: 107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 166
PGFGGQ F+E + K+ LR K + I+VDGG+G + K +AGAN +VAG++V
Sbjct: 155 PGFGGQKFMEDMMPKVETLR----AKFPHLNIQVDGGLGKETIPKAAKAGANVIVAGTSV 210
Query: 167 FGAKDYAEAIKGIK 180
F A D + I +K
Sbjct: 211 FTAADPHDVISFMK 224
>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1
PE=3 SV=1
Length = 239
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 108/195 (55%), Gaps = 17/195 (8%)
Query: 1 MDGRFVPNITIGPLVVDALRPV--------TDLP---LDVHLMIVEPEQRVPDFIKAGAD 49
MDG FVPNIT+GP +V +LR +D P D H+M+ EPE+ V F++ GAD
Sbjct: 38 MDGHFVPNITLGPPIVKSLRKAVPRVGDKESDKPKAFFDCHMMVAEPEKWVDVFVENGAD 97
Query: 50 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 109
+ H E +T + + IK G +A + P T + + + +D+ L+M+V PGF
Sbjct: 98 QFTFHYE--ATKNPLELVKLIKSRGIRAACAIKPDTPVDVLFELAPYLDMALVMTVEPGF 155
Query: 110 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 169
GGQ F+ + K++ LR EK I+VDGG+G + +AGAN +VAG++VF A
Sbjct: 156 GGQKFMPDMMPKVAALR----EKFPQLDIQVDGGLGKETIPHAAKAGANVIVAGTSVFAA 211
Query: 170 KDYAEAIKGIKTSKR 184
D + I +K + R
Sbjct: 212 ADQKDVISYMKDNVR 226
>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1
Length = 228
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 100/175 (57%), Gaps = 12/175 (6%)
Query: 1 MDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 58
MDG FVPNIT G VV++LR D D+H+M+ PEQ V AGA+ + H E
Sbjct: 39 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLE-- 96
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
+T + + I++ G K G+ + P T++ + + +D+ L+M+V PGFGGQ F+E
Sbjct: 97 ATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDM 156
Query: 119 VKKISDLRRM--CLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
+ K+ LR L+ IEVDGGVGP K EAGAN +V+GSA+ + D
Sbjct: 157 MPKVHWLRTQFPTLD------IEVDGGVGPDTVQKCAEAGANMIVSGSAIMRSDD 205
>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPE1 PE=3 SV=1
Length = 246
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 104/202 (51%), Gaps = 22/202 (10%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLP----------------LDVHLMIVEPEQRVPDFI 44
MDG FVPNIT+G +V +LR D H+M+ EPE+ V DF
Sbjct: 38 MDGHFVPNITLGQPIVTSLRRAVPRSQEEEKASGEVARPTAFFDCHMMVEEPEKWVADFA 97
Query: 45 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMS 104
KAGAD + H E +T + IK+ G KA + P T + + + +D+ L+M+
Sbjct: 98 KAGADQFTFHYE--ATKDPLSLVKLIKENGIKAACAIKPGTPVDVLFELAPYLDMALVMT 155
Query: 105 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS 164
V PGFGGQ F+ + K+ LR K + I+VDGG+G + +AGAN +VAG+
Sbjct: 156 VEPGFGGQKFMPDMMPKVEALRT----KFPHMNIQVDGGLGKETIGVAAKAGANVIVAGT 211
Query: 165 AVFGAKDYAEAIKGIKTSKRPQ 186
+VF A D E I +K R +
Sbjct: 212 SVFTASDPHEVISFMKEEVRKE 233
>sp|Q8SRP6|RPE_ENCCU Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPE1 PE=3 SV=1
Length = 217
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH---CEQ 57
MD FV NIT GP +++ + D DVH+M+ P + +V++H C++
Sbjct: 42 MDTTFVKNITFGPCIINRILE-HDFVFDVHMMVESPLDIIMQIDLERVSLVTIHSEVCDK 100
Query: 58 SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 117
+ R N + G+ LNP T + E + D VLIMSV PGFGGQ F E
Sbjct: 101 AGVAEYLRKRNVL------FGIALNPETQVDDAE--MRSADFVLIMSVKPGFGGQKFQEE 152
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
+ K+ ++RR + +DGG+ N ++ GA+ V GS F + D + ++
Sbjct: 153 CLAKVEEVRR------YGKMVGIDGGIEMSNIGRI--TGADYAVVGSGYFRSGDRKKFLR 204
Query: 178 GI 179
I
Sbjct: 205 DI 206
>sp|P39362|SGCE_ECOLI Protein SgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1
Length = 210
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 6/180 (3%)
Query: 2 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 61
D F+ NIT G V A+ T PL H M+ P++ + + VH E +
Sbjct: 36 DSSFINNITFGMKTVQAVARQTPHPLSFHFMLARPQRWFNALAEIRPAWIFVHAE--TLD 93
Query: 62 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 121
+ TL +I+ GA+AG+V NPAT + A + +D V++M+ P GQ FI S +K
Sbjct: 94 YPSETLTEIRHTGARAGLVFNPATPIDAWRYLASELDGVMVMTSEPDGQGQRFIPSMCEK 153
Query: 122 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181
I +R + W DGG+ A ++ AGA +V G A+F + DY + T
Sbjct: 154 IQKVRTAFPQTEC--W--ADGGITLAAAQQLAAAGAQHMVIGRALFSSSDYRATLAQFAT 209
>sp|Q5PJE1|LSRE_SALPA Putative epimerase LsrE OS=Salmonella paratyphi A (strain ATCC 9150
/ SARB42) GN=lsrE PE=3 SV=1
Length = 254
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 13/189 (6%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG+F P T+GP V+ L P T + DVHLM+ + +KAGA +++ E
Sbjct: 54 MDGQFCPQFTVGPWAVEQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GD 109
Query: 61 IHLHRTLNQIK---------DLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 111
IHLH TL+ + ++ G+ L PAT L I +L V+++ +++VNPG+G
Sbjct: 110 IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGS 169
Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
+ ++++ L + +K I +DG + +I G + +V+GSA+F
Sbjct: 170 KMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDR 229
Query: 172 YAEAIKGIK 180
AE + +
Sbjct: 230 LAENTRSWR 238
>sp|Q8Z2Y1|LSRE_SALTI Putative epimerase LsrE OS=Salmonella typhi GN=lsrE PE=3 SV=1
Length = 254
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG+F P T+GP V L P T + DVHLM+ + +KAGA +++ E
Sbjct: 54 MDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWAAAQACVKAGAHCITLQAE--GD 109
Query: 61 IHLHRTLNQIK---------DLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 111
IHLH TL+ + ++ G+ L PAT L I +L V+++ +++VNPG+G
Sbjct: 110 IHLHHTLSWLGQQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGS 169
Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
+ ++++ L + +K I +DG + +I G + +V+GSA+F
Sbjct: 170 KMRSSDLYERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|Q8ZKP8|LSRE_SALTY Putative epimerase LsrE OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=lsrE PE=2 SV=1
Length = 254
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG+F P T+GP V L P T + DVHLM+ + +KAGA +++ E
Sbjct: 54 MDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GD 109
Query: 61 IHLHRTLNQIK---------DLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 111
IHLH TL+ + ++ G+ L PAT L I +L V+++ +++VNPG+G
Sbjct: 110 IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGS 169
Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
+ ++++ L + +K I +DG + +I G + +V+GSA+F
Sbjct: 170 KMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|A9MZG7|LSRE_SALPB Putative epimerase LsrE OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=lsrE PE=3 SV=1
Length = 254
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG+F P T+GP V L P T + DVHLM+ + +KAGA +++ E
Sbjct: 54 MDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GD 109
Query: 61 IHLHRTLNQIK---------DLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 111
IHLH TL+ + ++ G+ L PAT L I +L V+++ +++VNPG+G
Sbjct: 110 IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGS 169
Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
+ ++++ L + +K I +DG + +I G + +V+GSA+F
Sbjct: 170 KMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|Q57HD7|LSRE_SALCH Putative epimerase LsrE OS=Salmonella choleraesuis (strain SC-B67)
GN=lsrE PE=3 SV=1
Length = 254
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG+F P T+GP V L P T + DVHLM+ + +KAGA +++ E
Sbjct: 54 MDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GD 109
Query: 61 IHLHRTLNQIK---------DLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 111
IHLH TL+ + ++ G+ L PAT L I +L V+++ +++VNPG+G
Sbjct: 110 IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGS 169
Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
+ ++++ L + +K I +DG + +I G + +V+GSA+F
Sbjct: 170 KMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|P75522|RPE_MYCPN Probable ribulose-phosphate 3-epimerase OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=rpe PE=3 SV=1
Length = 215
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 4 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA-DIVSVHCEQSSTIH 62
FV N +D L+ + ++VHLM+ EQ +P ++ A +S H E
Sbjct: 44 HFVDNTVFQGEHLDELQQIG-FQVNVHLMVQALEQILPVYLHHQAVKRISFHVEPFDIPT 102
Query: 63 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 122
+ + QIK G + G+ T L E ++ +D V +MSV PG GGQ+F + +
Sbjct: 103 IKHFIAQIKQAGKQVGLAFKFTTPLVNYERLVQQLDFVTLMSVPPGKGGQAFNSAVFNNL 162
Query: 123 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS 164
+ IE+DGG+ N ++ I+ N +V GS
Sbjct: 163 KQAHKYHCS------IEIDGGIKLDNIHQ-IQDDVNFIVMGS 197
>sp|P47358|RPE_MYCGE Probable ribulose-phosphate 3-epimerase OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=rpe PE=3 SV=1
Length = 209
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADI--VSVHCE 56
MD +FV N +D L+ + ++VHLM+ EQ +P +F + ++ +S H E
Sbjct: 37 MD-QFVHNTAFKGEYLDELKTI-GFDVNVHLMV---EQIIPQINFYLSQPNVKRISFHVE 91
Query: 57 QSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 116
S + + +K+ G + G+ T+L + +D + +MSV PG GGQ+F E
Sbjct: 92 PFSFAKIKELIQLVKENGKEVGLAFKFTTNLQLYQPFFTTIDFITLMSVPPGKGGQAFNE 151
Query: 117 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 166
+ + + N IE+DGG+ N + I+A + +V GS
Sbjct: 152 AV------FTNLKIANHYNLKIEIDGGIKVNNIDQ-IKAFVDFIVMGSGF 194
>sp|Q9PGC4|THIE_XYLFA Thiamine-phosphate synthase OS=Xylella fastidiosa (strain 9a5c)
GN=thiE PE=3 SV=1
Length = 234
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 108 GFGGQSFIESQVKKIS-----DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 162
GFG +F S K +L R GV P + + GG+ PKN +IEAGA L
Sbjct: 156 GFG--TFYPSHTKTTPYRATPELLRQTTHLGV-PRVAI-GGLTPKNIAPIIEAGAELLAV 211
Query: 163 GSAVFGAKDYAEAIKGIKT 181
S ++ AK+ A+K ++
Sbjct: 212 ISGIYSAKNPVTALKAYQS 230
>sp|O28964|FAEHP_ARCFU Bifunctional enzyme fae/hps OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=fae-hps PE=3 SV=1
Length = 394
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 138 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 185
+ V GG+ P+N +VI AGA+ +V G AV A+D A++ + +P
Sbjct: 336 VAVAGGIRPENVEEVIAAGADIIVVGRAVTKARDVEGAVRKFMSHMKP 383
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,808,934
Number of Sequences: 539616
Number of extensions: 2852407
Number of successful extensions: 8412
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 8236
Number of HSP's gapped (non-prelim): 163
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)