Query 029661
Match_columns 190
No_of_seqs 162 out of 1072
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 16:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0036 Rpe Pentose-5-phosphat 100.0 5.7E-62 1.2E-66 383.4 20.6 181 1-184 38-218 (220)
2 PRK08745 ribulose-phosphate 3- 100.0 1.7E-60 3.8E-65 381.5 21.2 183 1-185 38-221 (223)
3 PRK09722 allulose-6-phosphate 100.0 4.8E-59 1E-63 373.8 21.1 183 1-184 36-220 (229)
4 PRK08091 ribulose-phosphate 3- 100.0 6.3E-59 1.4E-63 372.0 21.4 179 1-183 47-227 (228)
5 PRK08883 ribulose-phosphate 3- 100.0 1.9E-58 4.1E-63 369.8 20.4 183 1-185 34-217 (220)
6 PRK08005 epimerase; Validated 100.0 3.9E-58 8.4E-63 364.2 19.6 175 1-181 35-209 (210)
7 PRK14057 epimerase; Provisiona 100.0 1.2E-57 2.5E-62 368.6 21.3 180 1-184 54-242 (254)
8 KOG3111 D-ribulose-5-phosphate 100.0 2E-56 4.2E-61 341.7 19.1 182 1-188 39-222 (224)
9 PF00834 Ribul_P_3_epim: Ribul 100.0 1.6E-56 3.5E-61 353.9 15.7 168 1-170 34-201 (201)
10 PTZ00170 D-ribulose-5-phosphat 100.0 1.7E-50 3.7E-55 325.9 17.5 179 1-184 41-222 (228)
11 PLN02334 ribulose-phosphate 3- 100.0 2.7E-44 5.9E-49 290.2 20.2 185 1-190 42-229 (229)
12 TIGR01163 rpe ribulose-phospha 100.0 1.1E-36 2.4E-41 241.7 20.7 178 1-180 33-210 (210)
13 PRK05581 ribulose-phosphate 3- 100.0 3E-36 6.5E-41 241.1 21.5 181 1-183 38-218 (220)
14 cd00429 RPE Ribulose-5-phospha 100.0 2.9E-34 6.2E-39 227.7 20.2 178 1-180 34-211 (211)
15 PRK13306 ulaD 3-keto-L-gulonat 100.0 4.8E-33 1E-37 222.6 15.2 169 9-184 40-212 (216)
16 PRK13307 bifunctional formalde 100.0 7.4E-33 1.6E-37 237.1 16.9 166 9-184 210-379 (391)
17 PRK13813 orotidine 5'-phosphat 100.0 1E-32 2.3E-37 220.5 9.6 171 9-185 40-214 (215)
18 cd04724 Tryptophan_synthase_al 100.0 5.3E-31 1.1E-35 214.3 13.4 159 1-169 42-221 (242)
19 TIGR03128 RuMP_HxlA 3-hexulose 100.0 8.4E-30 1.8E-34 202.2 16.8 167 9-183 36-206 (206)
20 PRK13125 trpA tryptophan synth 100.0 1.6E-29 3.4E-34 205.9 17.0 160 13-181 63-235 (244)
21 TIGR00262 trpA tryptophan synt 100.0 4.3E-28 9.2E-33 198.6 17.3 164 12-184 74-253 (256)
22 cd04726 KGPDC_HPS 3-Keto-L-gul 100.0 2.6E-27 5.6E-32 187.1 16.3 161 9-178 37-201 (202)
23 COG0269 SgbH 3-hexulose-6-phos 99.9 6.6E-26 1.4E-30 178.0 16.6 166 10-185 41-214 (217)
24 CHL00200 trpA tryptophan synth 99.9 2.1E-24 4.6E-29 177.0 15.1 163 12-184 79-255 (263)
25 PRK07028 bifunctional hexulose 99.9 6.8E-22 1.5E-26 172.9 14.9 168 7-184 38-211 (430)
26 PRK00230 orotidine 5'-phosphat 99.9 3.6E-22 7.9E-27 161.3 10.3 173 1-184 34-228 (230)
27 PRK00043 thiE thiamine-phospha 99.8 3.1E-20 6.6E-25 147.5 11.9 149 26-187 63-212 (212)
28 cd00564 TMP_TenI Thiamine mono 99.8 1.3E-19 2.8E-24 141.5 10.5 161 1-181 34-196 (196)
29 PLN02591 tryptophan synthase 99.8 2E-18 4.4E-23 140.7 16.3 163 12-184 66-243 (250)
30 PF00290 Trp_syntA: Tryptophan 99.8 2.3E-17 5E-22 134.9 14.1 164 13-187 75-255 (259)
31 COG0159 TrpA Tryptophan syntha 99.7 6.5E-17 1.4E-21 131.6 15.7 161 13-184 82-257 (265)
32 PRK13305 sgbH 3-keto-L-gulonat 99.7 1.8E-17 3.9E-22 132.6 8.1 169 9-185 40-213 (218)
33 PRK13111 trpA tryptophan synth 99.7 5E-16 1.1E-20 127.3 15.5 147 12-169 76-234 (258)
34 TIGR01740 pyrF orotidine 5'-ph 99.7 2.9E-16 6.2E-21 125.5 8.5 159 10-180 36-213 (213)
35 COG0352 ThiE Thiamine monophos 99.6 7.1E-15 1.5E-19 116.9 11.4 145 26-185 63-208 (211)
36 cd00331 IGPS Indole-3-glycerol 99.6 5E-14 1.1E-18 112.7 14.5 156 12-179 60-217 (217)
37 PRK00278 trpC indole-3-glycero 99.6 1.4E-13 2.9E-18 113.3 15.4 160 12-181 99-258 (260)
38 COG0284 PyrF Orotidine-5'-phos 99.5 2.4E-13 5.3E-18 110.1 11.5 167 9-184 48-235 (240)
39 KOG4175 Tryptophan synthase al 99.5 1.4E-12 3E-17 101.5 14.8 145 14-168 84-240 (268)
40 cd04722 TIM_phosphate_binding 99.5 1.5E-12 3.2E-17 100.6 14.7 156 4-164 37-200 (200)
41 cd04725 OMP_decarboxylase_like 99.5 3E-13 6.6E-18 108.3 10.8 160 10-178 36-215 (216)
42 PRK07695 transcriptional regul 99.5 2.6E-12 5.7E-17 101.7 14.3 142 29-186 58-200 (201)
43 PRK12290 thiE thiamine-phospha 99.4 8E-13 1.7E-17 114.4 10.9 149 27-184 260-413 (437)
44 PRK06512 thiamine-phosphate py 99.4 3.1E-12 6.8E-17 102.8 12.3 143 28-185 71-214 (221)
45 PF00215 OMPdecase: Orotidine 99.4 1.2E-13 2.7E-18 111.2 3.7 165 10-179 38-226 (226)
46 TIGR00343 pyridoxal 5'-phospha 99.4 1.9E-11 4.1E-16 100.2 14.0 160 11-184 54-249 (287)
47 PRK04302 triosephosphate isome 99.4 8.2E-11 1.8E-15 94.7 17.3 164 12-182 44-221 (223)
48 cd04730 NPD_like 2-Nitropropan 99.4 3.8E-11 8.3E-16 96.8 15.3 143 14-169 43-191 (236)
49 PRK02615 thiamine-phosphate py 99.4 1.5E-11 3.2E-16 104.6 12.9 143 28-185 201-344 (347)
50 cd04727 pdxS PdxS is a subunit 99.3 5.1E-11 1.1E-15 97.6 15.0 161 11-184 52-246 (283)
51 TIGR00693 thiE thiamine-phosph 99.3 9E-12 2E-16 97.9 9.5 138 28-179 57-196 (196)
52 PRK03512 thiamine-phosphate py 99.3 2.9E-11 6.4E-16 96.5 11.3 143 28-184 63-207 (211)
53 PRK01130 N-acetylmannosamine-6 99.3 1.6E-10 3.4E-15 92.7 14.4 154 12-175 44-214 (221)
54 PRK04180 pyridoxal biosynthesi 99.3 1E-10 2.2E-15 96.2 12.7 163 10-184 60-255 (293)
55 PRK09140 2-dehydro-3-deoxy-6-p 99.2 2.5E-10 5.5E-15 90.8 13.7 151 12-184 48-204 (206)
56 cd04729 NanE N-acetylmannosami 99.2 3.5E-10 7.7E-15 90.6 13.7 153 12-173 48-216 (219)
57 PF04131 NanE: Putative N-acet 99.2 2.9E-09 6.3E-14 82.8 15.9 159 12-184 20-191 (192)
58 PLN02898 HMP-P kinase/thiamin- 99.1 5.7E-10 1.2E-14 99.7 12.6 144 28-185 351-497 (502)
59 PRK13957 indole-3-glycerol-pho 99.1 7.7E-09 1.7E-13 84.2 14.7 163 2-179 83-246 (247)
60 PRK06552 keto-hydroxyglutarate 99.1 4E-09 8.6E-14 84.4 12.4 150 12-184 51-210 (213)
61 cd00405 PRAI Phosphoribosylant 99.1 1.5E-08 3.3E-13 80.2 15.7 148 12-174 36-195 (203)
62 PF02581 TMP-TENI: Thiamine mo 99.0 2.2E-09 4.7E-14 83.6 10.4 124 28-166 56-180 (180)
63 PRK09517 multifunctional thiam 99.0 2.1E-09 4.5E-14 100.3 11.8 147 28-184 63-215 (755)
64 cd04732 HisA HisA. Phosphorib 99.0 1.8E-08 3.9E-13 81.2 15.3 150 10-170 59-226 (234)
65 PRK07455 keto-hydroxyglutarate 99.0 8.4E-09 1.8E-13 80.9 12.5 134 13-169 51-186 (187)
66 cd00452 KDPG_aldolase KDPG and 99.0 5.3E-09 1.1E-13 82.1 11.3 134 12-168 42-176 (190)
67 cd00958 DhnA Class I fructose- 99.0 1E-08 2.2E-13 82.9 13.0 128 40-183 82-234 (235)
68 PF00218 IGPS: Indole-3-glycer 99.0 7.5E-09 1.6E-13 84.7 12.1 156 12-179 97-254 (254)
69 TIGR03151 enACPred_II putative 99.0 2.8E-08 6.2E-13 83.6 14.8 138 15-168 53-195 (307)
70 TIGR00007 phosphoribosylformim 99.0 3.8E-08 8.3E-13 79.2 14.8 146 13-169 61-224 (230)
71 cd04728 ThiG Thiazole synthase 98.9 8.8E-09 1.9E-13 83.1 10.7 135 40-184 82-225 (248)
72 PRK05718 keto-hydroxyglutarate 98.9 3E-08 6.6E-13 79.2 13.7 138 9-169 50-189 (212)
73 PRK00208 thiG thiazole synthas 98.9 9.6E-09 2.1E-13 83.0 10.8 135 40-184 82-225 (250)
74 PRK13585 1-(5-phosphoribosyl)- 98.9 8.6E-08 1.9E-12 77.7 15.1 148 13-171 65-230 (241)
75 COG0134 TrpC Indole-3-glycerol 98.9 1.4E-08 3E-13 82.7 9.5 158 12-180 95-253 (254)
76 TIGR02127 pyrF_sub2 orotidine 98.9 5.2E-09 1.1E-13 86.1 7.2 161 10-177 66-258 (261)
77 COG3010 NanE Putative N-acetyl 98.9 2.8E-07 6.1E-12 72.4 16.1 161 12-185 54-228 (229)
78 cd01568 QPRTase_NadC Quinolina 98.8 1.4E-08 3.1E-13 83.9 8.9 95 62-169 166-261 (269)
79 cd04723 HisA_HisF Phosphoribos 98.8 1.3E-07 2.8E-12 76.7 13.7 147 12-170 66-225 (233)
80 TIGR01334 modD putative molybd 98.8 1.5E-07 3.3E-12 77.9 14.0 137 14-165 111-265 (277)
81 cd02810 DHOD_DHPD_FMN Dihydroo 98.8 3.8E-07 8.3E-12 75.8 15.1 147 23-172 97-282 (289)
82 PRK13587 1-(5-phosphoribosyl)- 98.8 2.3E-07 5E-12 75.3 13.2 145 13-168 65-226 (234)
83 cd04740 DHOD_1B_like Dihydroor 98.7 1.4E-06 3E-11 72.8 17.5 152 14-170 76-267 (296)
84 PRK08999 hypothetical protein; 98.7 5.3E-08 1.1E-12 81.8 8.6 124 28-167 188-312 (312)
85 PRK06806 fructose-bisphosphate 98.7 5.5E-07 1.2E-11 74.9 14.4 156 17-181 67-246 (281)
86 cd04731 HisF The cyclase subun 98.7 1.1E-06 2.3E-11 71.5 15.8 158 12-180 59-241 (243)
87 PRK04169 geranylgeranylglycery 98.7 6.3E-07 1.4E-11 72.5 14.2 58 119-183 172-231 (232)
88 PRK13802 bifunctional indole-3 98.7 3.9E-07 8.4E-12 84.0 14.2 159 12-182 99-259 (695)
89 TIGR01949 AroFGH_arch predicte 98.7 3.8E-07 8.3E-12 74.9 12.7 130 39-184 95-248 (258)
90 PRK02083 imidazole glycerol ph 98.7 1.9E-06 4.2E-11 70.5 15.7 160 11-181 61-246 (253)
91 PRK00748 1-(5-phosphoribosyl)- 98.7 9.4E-07 2E-11 71.2 13.5 147 12-169 62-226 (233)
92 TIGR01182 eda Entner-Doudoroff 98.6 1.4E-06 3E-11 69.2 14.0 137 12-170 46-183 (204)
93 PRK07226 fructose-bisphosphate 98.6 1.2E-06 2.5E-11 72.4 14.2 129 40-184 99-252 (267)
94 PRK05500 bifunctional orotidin 98.6 1.9E-07 4.1E-12 82.7 9.5 151 23-184 87-259 (477)
95 PLN02460 indole-3-glycerol-pho 98.6 9E-07 1.9E-11 74.9 13.1 158 12-180 168-334 (338)
96 PF01884 PcrB: PcrB family; I 98.6 4.5E-07 9.8E-12 73.0 10.8 47 135-181 182-229 (230)
97 COG0106 HisA Phosphoribosylfor 98.6 5.6E-06 1.2E-10 66.9 17.0 159 12-181 63-240 (241)
98 TIGR00735 hisF imidazoleglycer 98.6 2.1E-06 4.4E-11 70.4 14.8 157 13-180 63-247 (254)
99 TIGR03572 WbuZ glycosyl amidat 98.6 2.5E-06 5.4E-11 68.8 14.8 145 11-166 61-230 (232)
100 PRK14024 phosphoribosyl isomer 98.6 1.9E-06 4.2E-11 70.1 14.1 155 13-178 64-238 (241)
101 TIGR01768 GGGP-family geranylg 98.5 2.1E-06 4.5E-11 69.0 12.5 47 119-169 167-214 (223)
102 PRK07259 dihydroorotate dehydr 98.5 6.8E-06 1.5E-10 68.9 16.2 151 15-170 79-270 (301)
103 PRK01033 imidazole glycerol ph 98.5 4.7E-06 1E-10 68.5 14.4 145 13-168 63-231 (258)
104 PRK06843 inosine 5-monophospha 98.5 3.8E-06 8.1E-11 73.0 14.4 128 38-169 156-291 (404)
105 PRK06096 molybdenum transport 98.5 2.3E-06 4.9E-11 71.2 12.4 140 14-169 112-269 (284)
106 PRK06015 keto-hydroxyglutarate 98.5 5E-06 1.1E-10 65.9 13.8 134 12-169 42-178 (201)
107 PF01081 Aldolase: KDPG and KH 98.5 2.6E-06 5.5E-11 67.3 12.1 137 12-170 46-183 (196)
108 cd02801 DUS_like_FMN Dihydrour 98.5 3.5E-06 7.6E-11 67.6 13.3 143 23-173 53-223 (231)
109 PRK00125 pyrF orotidine 5'-pho 98.5 9.6E-07 2.1E-11 73.3 9.7 155 10-172 66-255 (278)
110 COG1646 Predicted phosphate-bi 98.5 4.9E-06 1.1E-10 66.6 13.1 130 28-170 16-227 (240)
111 PRK07428 nicotinate-nucleotide 98.5 1.1E-06 2.5E-11 73.2 9.8 94 62-170 181-278 (288)
112 PRK09427 bifunctional indole-3 98.5 2.8E-06 6.1E-11 75.0 12.5 158 12-181 98-256 (454)
113 PRK07565 dihydroorotate dehydr 98.4 1.6E-05 3.4E-10 67.7 16.1 147 18-169 95-274 (334)
114 PRK07315 fructose-bisphosphate 98.4 8.5E-06 1.8E-10 68.2 13.9 160 15-182 66-249 (293)
115 PRK08649 inosine 5-monophospha 98.4 1.5E-05 3.3E-10 68.7 15.8 130 36-169 143-291 (368)
116 TIGR01919 hisA-trpF 1-(5-phosp 98.4 1.4E-05 3.1E-10 65.2 14.4 154 12-176 62-239 (243)
117 TIGR01304 IMP_DH_rel_2 IMP deh 98.4 1.6E-05 3.4E-10 68.6 15.2 132 35-169 143-290 (369)
118 COG0149 TpiA Triosephosphate i 98.4 1.6E-05 3.5E-10 64.7 14.2 140 40-181 81-249 (251)
119 PRK05848 nicotinate-nucleotide 98.4 3.7E-06 8E-11 69.7 10.4 95 61-170 166-264 (273)
120 PF00977 His_biosynth: Histidi 98.4 3E-06 6.5E-11 68.5 9.7 145 14-169 63-226 (229)
121 PRK08072 nicotinate-nucleotide 98.4 4.5E-06 9.8E-11 69.3 10.9 91 62-170 173-267 (277)
122 cd04739 DHOD_like Dihydroorota 98.4 3.1E-05 6.6E-10 65.8 16.2 143 22-169 97-272 (325)
123 TIGR01859 fruc_bis_ald_ fructo 98.4 1.9E-05 4.1E-10 65.8 14.5 147 15-168 64-235 (282)
124 PRK14114 1-(5-phosphoribosyl)- 98.4 2.2E-05 4.7E-10 64.0 14.5 153 13-178 63-239 (241)
125 PF03060 NMO: Nitronate monoox 98.4 2.3E-05 5E-10 66.6 15.0 139 15-167 53-223 (330)
126 PF01729 QRPTase_C: Quinolinat 98.4 2.6E-06 5.6E-11 65.8 8.3 96 62-170 65-162 (169)
127 PF03437 BtpA: BtpA family; I 98.3 2.5E-05 5.5E-10 64.0 14.3 146 11-168 60-232 (254)
128 PRK07114 keto-hydroxyglutarate 98.3 2.3E-05 5E-10 63.0 13.9 135 12-169 53-194 (222)
129 TIGR01037 pyrD_sub1_fam dihydr 98.3 3.6E-05 7.9E-10 64.4 15.4 144 23-171 89-271 (300)
130 cd04738 DHOD_2_like Dihydrooro 98.3 3E-05 6.6E-10 65.8 15.0 151 15-168 117-314 (327)
131 cd00311 TIM Triosephosphate is 98.3 1.5E-05 3.3E-10 64.9 12.6 132 40-172 77-237 (242)
132 cd02809 alpha_hydroxyacid_oxid 98.3 2.9E-05 6.3E-10 65.1 14.7 145 15-167 106-260 (299)
133 PRK13586 1-(5-phosphoribosyl)- 98.3 3.6E-05 7.8E-10 62.4 14.7 145 13-169 62-224 (232)
134 PRK04128 1-(5-phosphoribosyl)- 98.3 3.2E-05 7E-10 62.5 14.3 141 13-170 62-218 (228)
135 cd02812 PcrB_like PcrB_like pr 98.3 8.9E-06 1.9E-10 65.3 10.7 140 15-169 44-210 (219)
136 PRK05286 dihydroorotate dehydr 98.3 2.4E-05 5.2E-10 67.0 13.2 162 4-168 112-323 (344)
137 cd01572 QPRTase Quinolinate ph 98.3 8.9E-06 1.9E-10 67.3 9.9 90 63-170 168-261 (268)
138 cd00381 IMPDH IMPDH: The catal 98.2 4.9E-05 1.1E-09 64.6 14.6 130 37-169 96-232 (325)
139 PLN02446 (5-phosphoribosyl)-5- 98.2 6.4E-05 1.4E-09 61.8 14.5 153 13-178 73-256 (262)
140 TIGR00259 thylakoid_BtpA membr 98.2 9.6E-05 2.1E-09 60.7 15.4 140 17-167 72-231 (257)
141 COG0135 TrpF Phosphoribosylant 98.2 0.00011 2.4E-09 58.5 15.2 149 12-175 39-198 (208)
142 PRK14567 triosephosphate isome 98.2 5.3E-05 1.1E-09 62.1 13.6 139 40-180 78-248 (253)
143 CHL00162 thiG thiamin biosynth 98.2 2.9E-05 6.3E-10 63.1 11.6 126 48-184 105-239 (267)
144 PRK01222 N-(5'-phosphoribosyl) 98.2 0.00013 2.9E-09 58.2 15.3 146 12-173 40-196 (210)
145 TIGR00078 nadC nicotinate-nucl 98.2 1.2E-05 2.6E-10 66.4 9.4 88 63-169 164-255 (265)
146 PRK11840 bifunctional sulfur c 98.2 4.7E-05 1E-09 64.1 12.8 133 40-184 156-299 (326)
147 TIGR01302 IMP_dehydrog inosine 98.2 5.5E-05 1.2E-09 67.0 13.8 129 38-169 227-362 (450)
148 PRK05458 guanosine 5'-monophos 98.2 4.9E-05 1.1E-09 64.5 12.8 120 38-169 100-236 (326)
149 TIGR01769 GGGP geranylgeranylg 98.2 2E-05 4.4E-10 62.7 9.6 131 15-163 44-205 (205)
150 PRK08227 autoinducer 2 aldolas 98.1 2.4E-05 5.2E-10 64.5 10.1 150 15-183 64-246 (264)
151 PLN02274 inosine-5'-monophosph 98.1 6.8E-05 1.5E-09 67.3 13.8 126 37-169 250-386 (505)
152 cd02803 OYE_like_FMN_family Ol 98.1 7E-05 1.5E-09 63.3 13.1 127 41-175 148-323 (327)
153 cd04741 DHOD_1A_like Dihydroor 98.1 0.00026 5.7E-09 59.3 16.2 142 23-168 90-277 (294)
154 cd01573 modD_like ModD; Quinol 98.1 1.7E-05 3.7E-10 65.7 8.9 91 64-169 171-263 (272)
155 PRK14565 triosephosphate isome 98.1 8.2E-05 1.8E-09 60.4 12.6 135 40-179 78-234 (237)
156 PRK00042 tpiA triosephosphate 98.1 8.9E-05 1.9E-09 60.8 12.9 138 40-178 79-247 (250)
157 PTZ00314 inosine-5'-monophosph 98.1 0.00012 2.6E-09 65.5 14.8 129 38-169 244-379 (495)
158 PRK06801 hypothetical protein; 98.1 7E-05 1.5E-09 62.5 12.4 149 15-169 65-239 (286)
159 cd02940 DHPD_FMN Dihydropyrimi 98.1 0.00023 5E-09 59.7 15.7 150 16-168 90-286 (299)
160 PRK07896 nicotinate-nucleotide 98.1 2.5E-05 5.5E-10 65.1 9.6 94 62-170 185-281 (289)
161 PRK14905 triosephosphate isome 98.1 8E-05 1.7E-09 63.9 12.8 143 40-182 88-261 (355)
162 PRK08385 nicotinate-nucleotide 98.1 3.5E-05 7.6E-10 64.0 9.9 96 62-170 168-266 (278)
163 TIGR00737 nifR3_yhdG putative 98.1 0.00034 7.3E-09 59.2 16.2 143 23-173 61-232 (319)
164 PRK05742 nicotinate-nucleotide 98.1 2.2E-05 4.7E-10 65.2 8.6 91 62-170 175-268 (277)
165 cd04743 NPD_PKS 2-Nitropropane 98.0 0.00025 5.5E-09 60.0 14.7 145 15-171 45-211 (320)
166 PF05690 ThiG: Thiazole biosyn 98.0 4.7E-05 1E-09 61.2 9.5 134 40-184 82-225 (247)
167 PRK10415 tRNA-dihydrouridine s 98.0 0.00049 1.1E-08 58.4 16.3 141 25-173 65-234 (321)
168 PF03932 CutC: CutC family; I 98.0 9.8E-05 2.1E-09 58.5 11.1 135 13-160 39-196 (201)
169 COG1830 FbaB DhnA-type fructos 98.0 1.9E-05 4.2E-10 64.5 7.3 153 15-183 66-257 (265)
170 PF00697 PRAI: N-(5'phosphorib 98.0 0.00013 2.8E-09 57.7 11.4 148 11-174 35-190 (197)
171 KOG1606 Stationary phase-induc 98.0 8.9E-05 1.9E-09 58.7 10.1 159 12-182 66-257 (296)
172 PLN02716 nicotinate-nucleotide 98.0 0.00011 2.4E-09 61.7 11.0 100 62-170 185-297 (308)
173 TIGR01036 pyrD_sub2 dihydrooro 98.0 0.00027 5.8E-09 60.3 13.4 162 4-168 109-322 (335)
174 cd03174 DRE_TIM_metallolyase D 98.0 0.0003 6.6E-09 57.4 13.3 144 7-160 48-219 (265)
175 PRK05567 inosine 5'-monophosph 97.9 0.00032 7E-09 62.7 13.8 137 30-169 221-366 (486)
176 PLN02429 triosephosphate isome 97.9 0.00038 8.1E-09 58.7 13.2 138 40-178 140-307 (315)
177 PLN02446 (5-phosphoribosyl)-5- 97.9 5.4E-05 1.2E-09 62.2 7.8 92 83-187 42-136 (262)
178 PF00478 IMPDH: IMP dehydrogen 97.9 0.00047 1E-08 59.1 13.4 138 26-169 98-246 (352)
179 PRK07107 inosine 5-monophospha 97.9 0.00046 1E-08 61.9 13.9 130 38-168 245-386 (502)
180 PRK11815 tRNA-dihydrouridine s 97.9 0.00096 2.1E-08 56.9 15.3 145 23-172 63-242 (333)
181 PRK06978 nicotinate-nucleotide 97.9 0.00016 3.4E-09 60.4 10.1 136 15-170 134-284 (294)
182 PLN02495 oxidoreductase, actin 97.9 0.0017 3.7E-08 56.4 16.8 154 16-169 104-305 (385)
183 PRK05437 isopentenyl pyrophosp 97.9 0.00062 1.3E-08 58.5 14.0 150 15-169 110-296 (352)
184 TIGR00559 pdxJ pyridoxine 5'-p 97.8 0.00082 1.8E-08 54.3 13.6 162 14-184 52-236 (237)
185 PRK10550 tRNA-dihydrouridine s 97.8 0.001 2.2E-08 56.3 14.7 142 23-172 61-233 (312)
186 PRK11572 copper homeostasis pr 97.8 0.00085 1.8E-08 54.8 13.6 136 12-161 39-196 (248)
187 PRK06559 nicotinate-nucleotide 97.8 0.00024 5.1E-09 59.3 10.5 93 62-170 182-276 (290)
188 PRK15492 triosephosphate isome 97.8 0.00037 8.1E-09 57.4 11.5 131 40-170 87-248 (260)
189 PF04481 DUF561: Protein of un 97.8 0.0024 5.3E-08 50.9 15.4 167 9-181 46-232 (242)
190 COG0214 SNZ1 Pyridoxine biosyn 97.8 0.00037 7.9E-09 56.1 10.8 161 12-181 65-255 (296)
191 cd04732 HisA HisA. Phosphorib 97.8 7.1E-05 1.5E-09 60.2 7.1 79 83-169 28-108 (234)
192 TIGR00736 nifR3_rel_arch TIM-b 97.8 0.0014 3.1E-08 53.1 14.5 138 23-169 66-226 (231)
193 TIGR02129 hisA_euk phosphoribo 97.8 8.2E-05 1.8E-09 60.9 7.3 86 84-184 37-126 (253)
194 PTZ00333 triosephosphate isome 97.8 0.00089 1.9E-08 55.0 13.4 137 40-178 82-250 (255)
195 cd00945 Aldolase_Class_I Class 97.8 0.00064 1.4E-08 52.6 11.9 142 13-163 34-201 (201)
196 PRK08318 dihydropyrimidine deh 97.8 0.0023 4.9E-08 56.2 16.2 152 15-168 89-287 (420)
197 PRK09016 quinolinate phosphori 97.7 0.00016 3.4E-09 60.5 8.4 92 62-169 194-286 (296)
198 PLN02617 imidazole glycerol ph 97.7 0.00014 3E-09 65.7 8.6 98 85-188 268-388 (538)
199 PRK14114 1-(5-phosphoribosyl)- 97.7 0.00012 2.6E-09 59.7 7.5 81 83-172 29-111 (241)
200 PF00977 His_biosynth: Histidi 97.7 6.2E-05 1.3E-09 60.8 5.6 94 81-185 26-121 (229)
201 PF00121 TIM: Triosephosphate 97.7 0.00029 6.2E-09 57.6 9.5 133 40-173 77-241 (244)
202 PRK13958 N-(5'-phosphoribosyl) 97.7 0.0022 4.8E-08 51.1 14.2 148 11-174 37-195 (207)
203 PRK13586 1-(5-phosphoribosyl)- 97.7 0.00013 2.8E-09 59.2 7.2 78 84-170 30-109 (232)
204 PRK05265 pyridoxine 5'-phospha 97.7 0.0017 3.8E-08 52.4 13.4 163 14-185 55-238 (239)
205 cd02811 IDI-2_FMN Isopentenyl- 97.7 0.0026 5.7E-08 54.0 15.3 149 15-168 102-289 (326)
206 PRK07807 inosine 5-monophospha 97.7 0.0011 2.5E-08 59.1 13.5 131 37-173 229-370 (479)
207 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.7 0.0016 3.5E-08 54.0 13.6 139 14-161 59-222 (275)
208 PLN02561 triosephosphate isome 97.7 0.0012 2.6E-08 54.2 12.5 128 40-168 81-238 (253)
209 cd02922 FCB2_FMN Flavocytochro 97.7 0.0025 5.4E-08 54.6 15.0 151 15-168 106-305 (344)
210 TIGR01303 IMP_DH_rel_1 IMP deh 97.7 0.0014 3E-08 58.5 13.8 134 37-173 227-368 (475)
211 PRK13587 1-(5-phosphoribosyl)- 97.7 0.00013 2.8E-09 59.2 6.8 79 84-170 31-112 (234)
212 PRK02506 dihydroorotate dehydr 97.7 0.00093 2E-08 56.4 12.0 143 23-168 91-275 (310)
213 PRK06543 nicotinate-nucleotide 97.7 0.0004 8.6E-09 57.8 9.5 137 14-170 116-272 (281)
214 TIGR02129 hisA_euk phosphoribo 97.7 0.0012 2.5E-08 54.2 11.9 147 12-168 64-237 (253)
215 PRK14024 phosphoribosyl isomer 97.6 0.00031 6.7E-09 57.2 8.5 77 85-170 33-111 (241)
216 COG0157 NadC Nicotinate-nucleo 97.6 0.00058 1.3E-08 56.3 10.0 140 14-170 115-269 (280)
217 PRK13585 1-(5-phosphoribosyl)- 97.6 0.00021 4.5E-09 57.9 7.2 79 84-170 32-112 (241)
218 PRK00748 1-(5-phosphoribosyl)- 97.6 0.00024 5.3E-09 57.1 7.4 79 84-170 30-110 (233)
219 TIGR02151 IPP_isom_2 isopenten 97.6 0.0024 5.3E-08 54.4 13.8 152 17-173 105-296 (333)
220 KOG4201 Anthranilate synthase 97.6 0.00063 1.4E-08 54.2 9.3 137 33-180 146-283 (289)
221 TIGR00734 hisAF_rel hisA/hisF 97.6 0.003 6.5E-08 50.8 13.4 140 12-169 67-219 (221)
222 COG3142 CutC Uncharacterized p 97.6 0.0028 6E-08 50.9 12.7 135 15-166 42-202 (241)
223 TIGR00735 hisF imidazoleglycer 97.6 0.00034 7.4E-09 57.3 7.9 78 85-170 31-110 (254)
224 PRK06852 aldolase; Validated 97.6 0.00018 3.8E-09 60.5 6.2 159 15-183 82-287 (304)
225 TIGR00007 phosphoribosylformim 97.6 0.00023 5.1E-09 57.2 6.7 77 85-169 29-107 (230)
226 PRK08185 hypothetical protein; 97.6 0.0041 8.8E-08 51.9 14.2 144 16-168 60-233 (283)
227 cd02933 OYE_like_FMN Old yello 97.6 0.0028 6E-08 54.2 13.5 123 42-173 160-324 (338)
228 PRK12331 oxaloacetate decarbox 97.6 0.0029 6.2E-08 56.1 13.9 141 13-162 63-228 (448)
229 PRK04128 1-(5-phosphoribosyl)- 97.6 0.00017 3.8E-09 58.3 5.8 75 85-167 31-106 (228)
230 cd02911 arch_FMN Archeal FMN-b 97.5 0.011 2.3E-07 48.0 15.9 130 23-165 71-222 (233)
231 TIGR01306 GMP_reduct_2 guanosi 97.5 0.0036 7.9E-08 53.0 13.6 125 38-169 97-233 (321)
232 PRK06106 nicotinate-nucleotide 97.5 0.00061 1.3E-08 56.7 8.5 91 62-170 179-273 (281)
233 COG0106 HisA Phosphoribosylfor 97.5 0.00071 1.5E-08 54.8 8.5 79 83-169 30-110 (241)
234 PRK02083 imidazole glycerol ph 97.5 0.00053 1.1E-08 56.1 7.7 79 84-170 30-110 (253)
235 PF03740 PdxJ: Pyridoxal phosp 97.5 0.0016 3.4E-08 52.8 10.1 162 14-184 53-238 (239)
236 TIGR01305 GMP_reduct_1 guanosi 97.4 0.0049 1.1E-07 52.4 13.3 126 39-168 111-246 (343)
237 cd01571 NAPRTase_B Nicotinate 97.4 0.002 4.4E-08 54.2 11.1 52 119-170 228-280 (302)
238 COG2070 Dioxygenases related t 97.4 0.0016 3.4E-08 55.7 10.4 143 14-167 55-217 (336)
239 TIGR00742 yjbN tRNA dihydrouri 97.4 0.014 3E-07 49.6 15.9 144 23-171 53-231 (318)
240 PRK06256 biotin synthase; Vali 97.4 0.019 4.2E-07 48.7 16.9 161 14-181 130-319 (336)
241 PLN02979 glycolate oxidase 97.4 0.0018 3.8E-08 55.7 10.4 122 4-183 205-333 (366)
242 PLN02826 dihydroorotate dehydr 97.4 0.0086 1.9E-07 52.5 14.8 140 26-168 188-375 (409)
243 PRK14041 oxaloacetate decarbox 97.4 0.0028 6.1E-08 56.4 11.8 140 13-161 62-226 (467)
244 PF01180 DHO_dh: Dihydroorotat 97.4 0.0056 1.2E-07 51.1 13.0 144 24-170 96-281 (295)
245 PRK07188 nicotinate phosphorib 97.4 0.0034 7.3E-08 53.9 11.8 100 61-169 214-316 (352)
246 PRK09427 bifunctional indole-3 97.4 0.017 3.6E-07 51.4 16.4 145 11-174 293-443 (454)
247 PRK09282 pyruvate carboxylase 97.4 0.007 1.5E-07 55.5 14.3 140 14-162 64-228 (592)
248 TIGR00419 tim triosephosphate 97.4 0.0034 7.5E-08 49.9 10.9 124 40-169 74-204 (205)
249 cd00003 PNPsynthase Pyridoxine 97.4 0.0064 1.4E-07 49.1 12.4 160 14-182 52-233 (234)
250 COG0800 Eda 2-keto-3-deoxy-6-p 97.4 0.002 4.4E-08 51.2 9.4 149 12-184 51-207 (211)
251 cd04735 OYE_like_4_FMN Old yel 97.4 0.0018 3.9E-08 55.6 9.9 129 42-176 152-326 (353)
252 cd03332 LMO_FMN L-Lactate 2-mo 97.3 0.0012 2.6E-08 57.3 8.6 63 118-183 294-363 (383)
253 cd04731 HisF The cyclase subun 97.3 0.00094 2E-08 54.2 7.7 78 85-170 28-107 (243)
254 TIGR03572 WbuZ glycosyl amidat 97.3 0.00079 1.7E-08 54.2 7.0 79 84-170 30-110 (232)
255 TIGR01919 hisA-trpF 1-(5-phosp 97.3 0.0012 2.6E-08 53.9 8.1 48 119-171 63-111 (243)
256 cd04733 OYE_like_2_FMN Old yel 97.3 0.008 1.7E-07 51.2 13.4 125 42-174 157-333 (338)
257 cd04742 NPD_FabD 2-Nitropropan 97.3 0.011 2.4E-07 51.8 14.4 148 15-167 56-252 (418)
258 PLN02617 imidazole glycerol ph 97.3 0.013 2.9E-07 53.1 15.2 158 13-180 303-530 (538)
259 cd04737 LOX_like_FMN L-Lactate 97.3 0.0025 5.3E-08 54.8 10.0 115 11-183 208-331 (351)
260 PRK05096 guanosine 5'-monophos 97.3 0.013 2.7E-07 49.9 13.9 126 39-169 112-248 (346)
261 PF01645 Glu_synthase: Conserv 97.3 0.0055 1.2E-07 52.9 12.0 122 44-165 169-305 (368)
262 cd04723 HisA_HisF Phosphoribos 97.3 0.0016 3.5E-08 52.7 8.1 88 83-179 34-123 (233)
263 TIGR01108 oadA oxaloacetate de 97.3 0.0074 1.6E-07 55.2 13.1 144 13-161 58-222 (582)
264 PRK13523 NADPH dehydrogenase N 97.2 0.0054 1.2E-07 52.4 11.6 127 42-176 150-318 (337)
265 PRK01033 imidazole glycerol ph 97.2 0.0013 2.7E-08 54.1 7.2 79 84-170 30-110 (258)
266 PRK09250 fructose-bisphosphate 97.2 0.0073 1.6E-07 51.5 11.9 146 23-173 124-328 (348)
267 cd07943 DRE_TIM_HOA 4-hydroxy- 97.2 0.011 2.4E-07 48.6 12.5 140 12-160 61-214 (263)
268 COG0107 HisF Imidazoleglycerol 97.2 0.0017 3.6E-08 52.3 7.2 94 83-187 29-124 (256)
269 COG0434 SgcQ Predicted TIM-bar 97.2 0.015 3.3E-07 47.0 12.6 141 17-169 78-238 (263)
270 cd02808 GltS_FMN Glutamate syn 97.1 0.0077 1.7E-07 52.5 11.6 107 61-167 199-318 (392)
271 PLN02623 pyruvate kinase 97.1 0.013 2.9E-07 53.2 13.3 140 39-184 283-438 (581)
272 PRK12330 oxaloacetate decarbox 97.1 0.0064 1.4E-07 54.5 11.2 141 14-161 65-230 (499)
273 PF01070 FMN_dh: FMN-dependent 97.1 0.0017 3.7E-08 55.9 7.4 102 11-168 212-314 (356)
274 TIGR00433 bioB biotin syntheta 97.1 0.095 2.1E-06 43.5 17.6 161 14-180 98-292 (296)
275 PF00478 IMPDH: IMP dehydrogen 97.1 0.011 2.5E-07 50.7 11.8 128 23-163 36-177 (352)
276 PRK14566 triosephosphate isome 97.1 0.019 4.1E-07 47.4 12.6 133 40-174 88-252 (260)
277 PRK13803 bifunctional phosphor 97.1 0.049 1.1E-06 50.2 16.7 149 12-173 40-203 (610)
278 PRK12858 tagatose 1,6-diphosph 97.1 0.0097 2.1E-07 50.9 11.3 138 40-181 112-301 (340)
279 PLN02411 12-oxophytodienoate r 97.1 0.016 3.4E-07 50.6 12.8 130 42-176 173-355 (391)
280 PLN02493 probable peroxisomal 97.0 0.0067 1.4E-07 52.4 10.2 101 11-167 211-312 (367)
281 PRK11197 lldD L-lactate dehydr 97.0 0.0023 4.9E-08 55.5 7.4 117 12-184 233-356 (381)
282 cd02932 OYE_YqiM_FMN Old yello 97.0 0.014 3E-07 49.8 12.1 124 42-173 162-330 (336)
283 PF01207 Dus: Dihydrouridine s 97.0 0.016 3.4E-07 48.9 12.3 151 13-171 41-221 (309)
284 PRK07094 biotin synthase; Prov 97.0 0.031 6.7E-07 47.2 13.7 143 14-161 107-278 (323)
285 cd07938 DRE_TIM_HMGL 3-hydroxy 97.0 0.016 3.5E-07 48.1 11.8 144 6-161 48-223 (274)
286 PRK05692 hydroxymethylglutaryl 97.0 0.02 4.4E-07 47.8 12.3 144 6-160 54-228 (287)
287 COG1902 NemA NADH:flavin oxido 97.0 0.038 8.2E-07 47.8 14.0 130 42-176 157-331 (363)
288 PRK14042 pyruvate carboxylase 96.9 0.018 3.8E-07 52.8 12.5 140 13-161 63-227 (596)
289 PLN02363 phosphoribosylanthran 96.9 0.08 1.7E-06 43.6 15.1 142 11-167 83-232 (256)
290 PRK07998 gatY putative fructos 96.9 0.045 9.7E-07 45.7 13.6 145 15-168 65-234 (283)
291 cd00956 Transaldolase_FSA Tran 96.9 0.11 2.3E-06 41.5 15.4 159 14-181 41-207 (211)
292 PRK14040 oxaloacetate decarbox 96.9 0.023 5E-07 52.1 12.7 139 13-160 64-227 (593)
293 TIGR02708 L_lactate_ox L-lacta 96.9 0.0083 1.8E-07 51.8 9.3 62 119-183 270-338 (367)
294 PRK10605 N-ethylmaleimide redu 96.8 0.046 1E-06 47.2 13.3 122 42-173 167-331 (362)
295 PRK08508 biotin synthase; Prov 96.8 0.13 2.8E-06 42.7 15.6 163 14-181 79-269 (279)
296 cd02931 ER_like_FMN Enoate red 96.8 0.034 7.4E-07 48.3 12.4 123 43-173 159-345 (382)
297 COG2022 ThiG Uncharacterized e 96.7 0.014 3E-07 47.1 8.9 114 62-184 115-232 (262)
298 PF01791 DeoC: DeoC/LacD famil 96.7 0.0083 1.8E-07 48.5 7.8 122 40-168 82-235 (236)
299 PRK12581 oxaloacetate decarbox 96.7 0.038 8.2E-07 49.2 12.5 141 13-162 72-237 (468)
300 TIGR02814 pfaD_fam PfaD family 96.6 0.063 1.4E-06 47.5 13.2 147 16-167 62-257 (444)
301 PRK13962 bifunctional phosphog 96.6 0.05 1.1E-06 50.3 12.9 133 40-173 474-638 (645)
302 PRK08195 4-hyroxy-2-oxovalerat 96.6 0.053 1.2E-06 46.4 12.4 138 13-160 65-218 (337)
303 TIGR03239 GarL 2-dehydro-3-deo 96.6 0.096 2.1E-06 42.9 13.3 138 23-165 61-232 (249)
304 cd07944 DRE_TIM_HOA_like 4-hyd 96.5 0.055 1.2E-06 44.7 11.7 116 38-160 86-212 (266)
305 cd02930 DCR_FMN 2,4-dienoyl-Co 96.5 0.031 6.7E-07 48.0 10.4 127 42-173 145-316 (353)
306 cd02929 TMADH_HD_FMN Trimethyl 96.5 0.057 1.2E-06 46.7 12.0 128 42-174 158-330 (370)
307 cd04747 OYE_like_5_FMN Old yel 96.5 0.057 1.2E-06 46.6 11.9 125 42-173 152-338 (361)
308 TIGR03217 4OH_2_O_val_ald 4-hy 96.5 0.2 4.4E-06 42.7 15.2 140 13-160 64-217 (333)
309 PF00682 HMGL-like: HMGL-like 96.5 0.024 5.3E-07 45.6 9.2 138 16-161 46-211 (237)
310 PLN02746 hydroxymethylglutaryl 96.5 0.048 1E-06 46.8 11.1 145 6-161 96-271 (347)
311 PRK05826 pyruvate kinase; Prov 96.5 0.1 2.2E-06 46.6 13.4 140 39-184 178-334 (465)
312 TIGR01305 GMP_reduct_1 guanosi 96.4 0.049 1.1E-06 46.4 10.8 110 38-163 60-178 (343)
313 COG0167 PyrD Dihydroorotate de 96.4 0.015 3.1E-07 49.2 7.5 127 38-169 113-276 (310)
314 PLN02389 biotin synthase 96.4 0.46 9.9E-06 41.4 17.0 141 37-181 178-349 (379)
315 TIGR01858 tag_bisphos_ald clas 96.4 0.2 4.4E-06 41.8 14.1 146 15-168 63-235 (282)
316 PRK05096 guanosine 5'-monophos 96.4 0.082 1.8E-06 45.1 11.8 125 23-163 45-179 (346)
317 TIGR02317 prpB methylisocitrat 96.4 0.11 2.4E-06 43.4 12.5 141 13-169 62-235 (285)
318 PRK12738 kbaY tagatose-bisphos 96.4 0.15 3.2E-06 42.7 13.2 147 15-168 65-237 (286)
319 COG5016 Pyruvate/oxaloacetate 96.4 0.036 7.7E-07 48.2 9.6 115 37-160 101-228 (472)
320 PLN02535 glycolate oxidase 96.4 0.049 1.1E-06 47.0 10.6 150 12-168 111-312 (364)
321 cd04736 MDH_FMN Mandelate dehy 96.3 0.039 8.4E-07 47.6 9.9 109 66-184 227-345 (361)
322 cd00947 TBP_aldolase_IIB Tagat 96.3 0.19 4.2E-06 41.8 13.7 148 15-168 60-231 (276)
323 PRK08662 nicotinate phosphorib 96.3 0.062 1.3E-06 46.1 11.1 100 63-169 186-294 (343)
324 PRK06843 inosine 5-monophospha 96.3 0.066 1.4E-06 46.9 11.3 79 75-163 142-222 (404)
325 PRK15452 putative protease; Pr 96.3 0.035 7.6E-07 49.2 9.8 116 32-166 9-144 (443)
326 cd07948 DRE_TIM_HCS Saccharomy 96.3 0.11 2.4E-06 42.9 12.1 113 39-160 76-213 (262)
327 TIGR01306 GMP_reduct_2 guanosi 96.3 0.078 1.7E-06 45.0 11.4 126 24-163 34-165 (321)
328 PRK10558 alpha-dehydro-beta-de 96.3 0.16 3.5E-06 41.8 13.0 138 23-165 68-239 (256)
329 PRK04165 acetyl-CoA decarbonyl 96.3 0.13 2.9E-06 45.6 13.2 146 14-178 145-307 (450)
330 TIGR01417 PTS_I_fam phosphoeno 96.3 0.047 1E-06 49.9 10.6 122 41-165 377-527 (565)
331 PRK09195 gatY tagatose-bisphos 96.3 0.27 5.9E-06 41.1 14.3 147 15-168 65-237 (284)
332 cd00516 PRTase_typeII Phosphor 96.3 0.06 1.3E-06 44.6 10.4 36 134-169 238-273 (281)
333 PRK12999 pyruvate carboxylase; 96.3 0.062 1.3E-06 52.9 11.9 140 14-162 595-765 (1146)
334 PF00724 Oxidored_FMN: NADH:fl 96.2 0.15 3.3E-06 43.5 12.9 130 42-176 157-334 (341)
335 PF01116 F_bP_aldolase: Fructo 96.2 0.3 6.4E-06 40.9 14.3 147 15-168 64-240 (287)
336 cd03174 DRE_TIM_metallolyase D 96.2 0.52 1.1E-05 38.2 15.9 140 38-183 23-188 (265)
337 KOG2335 tRNA-dihydrouridine sy 96.2 0.16 3.5E-06 43.5 12.5 141 24-168 73-238 (358)
338 COG0325 Predicted enzyme with 96.2 0.45 9.7E-06 38.4 14.4 137 27-171 74-227 (228)
339 cd07939 DRE_TIM_NifV Streptomy 96.2 0.18 4E-06 41.3 12.7 140 14-167 50-216 (259)
340 PRK12737 gatY tagatose-bisphos 96.2 0.29 6.3E-06 40.9 13.9 147 15-168 65-237 (284)
341 TIGR00734 hisAF_rel hisA/hisF 96.1 0.023 5E-07 45.7 7.1 77 83-170 35-115 (221)
342 PRK10128 2-keto-3-deoxy-L-rham 96.0 0.22 4.8E-06 41.3 12.6 138 23-165 67-239 (267)
343 TIGR02320 PEP_mutase phosphoen 96.0 0.16 3.5E-06 42.4 11.9 146 14-169 68-246 (285)
344 cd04734 OYE_like_3_FMN Old yel 96.0 0.12 2.5E-06 44.3 11.2 124 42-173 149-325 (343)
345 PRK11320 prpB 2-methylisocitra 96.0 0.26 5.5E-06 41.4 12.9 141 13-169 67-240 (292)
346 COG0042 tRNA-dihydrouridine sy 96.0 0.31 6.7E-06 41.5 13.6 142 24-172 66-237 (323)
347 cd07945 DRE_TIM_CMS Leptospira 96.0 0.12 2.5E-06 43.1 10.9 117 37-161 77-221 (280)
348 PTZ00300 pyruvate kinase; Prov 96.0 0.3 6.5E-06 43.5 13.8 139 39-183 152-306 (454)
349 PRK05835 fructose-bisphosphate 95.9 0.3 6.6E-06 41.2 13.0 148 15-168 64-260 (307)
350 TIGR02311 HpaI 2,4-dihydroxyhe 95.9 0.092 2E-06 43.0 9.6 137 24-165 62-233 (249)
351 COG1411 Uncharacterized protei 95.8 0.034 7.3E-07 43.9 6.4 56 114-177 168-224 (229)
352 COG1856 Uncharacterized homolo 95.7 0.81 1.8E-05 37.0 14.0 153 5-161 70-250 (275)
353 cd02067 B12-binding B12 bindin 95.7 0.25 5.3E-06 35.3 10.4 89 64-162 17-108 (119)
354 PRK12457 2-dehydro-3-deoxyphos 95.7 0.061 1.3E-06 44.6 7.9 139 11-164 74-238 (281)
355 cd07940 DRE_TIM_IPMS 2-isoprop 95.7 0.18 3.8E-06 41.6 10.7 139 14-160 50-218 (268)
356 PRK08610 fructose-bisphosphate 95.7 0.42 9.1E-06 40.0 12.9 146 15-168 66-238 (286)
357 TIGR02660 nifV_homocitr homoci 95.6 0.29 6.2E-06 42.3 12.2 135 14-160 53-214 (365)
358 PF00224 PK: Pyruvate kinase, 95.6 0.082 1.8E-06 45.4 8.7 137 39-184 181-336 (348)
359 TIGR00167 cbbA ketose-bisphosp 95.6 0.82 1.8E-05 38.3 14.3 137 24-168 77-241 (288)
360 TIGR01418 PEP_synth phosphoeno 95.6 0.12 2.5E-06 49.1 10.2 118 45-165 625-768 (782)
361 PRK07709 fructose-bisphosphate 95.6 0.91 2E-05 38.0 14.5 147 15-168 66-238 (285)
362 PRK12857 fructose-1,6-bisphosp 95.5 0.54 1.2E-05 39.3 13.0 146 16-168 66-237 (284)
363 TIGR00640 acid_CoA_mut_C methy 95.5 0.45 9.8E-06 35.1 11.3 57 122-183 70-127 (132)
364 cd07941 DRE_TIM_LeuA3 Desulfob 95.5 0.26 5.7E-06 40.8 11.1 114 39-160 83-224 (273)
365 COG2108 Uncharacterized conser 95.5 0.14 3E-06 43.4 9.2 72 14-86 98-175 (353)
366 TIGR02319 CPEP_Pphonmut carbox 95.5 0.68 1.5E-05 38.9 13.4 142 14-169 67-239 (294)
367 PF06073 DUF934: Bacterial pro 95.5 0.26 5.6E-06 35.4 9.4 90 78-181 1-91 (110)
368 cd00959 DeoC 2-deoxyribose-5-p 95.4 0.27 5.8E-06 38.8 10.5 142 9-160 34-200 (203)
369 TIGR00284 dihydropteroate synt 95.4 0.3 6.5E-06 44.0 11.9 104 14-129 198-307 (499)
370 cd00381 IMPDH IMPDH: The catal 95.4 0.33 7.1E-06 41.3 11.6 126 24-163 34-163 (325)
371 PRK05458 guanosine 5'-monophos 95.4 0.31 6.6E-06 41.6 11.4 125 25-163 38-168 (326)
372 PF13714 PEP_mutase: Phosphoen 95.4 0.14 3.1E-06 41.6 9.0 140 14-169 59-225 (238)
373 cd00331 IGPS Indole-3-glycerol 95.4 0.067 1.5E-06 42.5 7.0 72 86-168 33-106 (217)
374 COG0854 PdxJ Pyridoxal phospha 95.4 0.56 1.2E-05 37.7 11.9 164 15-187 54-242 (243)
375 PRK06464 phosphoenolpyruvate s 95.4 0.14 3E-06 48.7 10.0 123 40-165 626-775 (795)
376 PF03740 PdxJ: Pyridoxal phosp 95.3 0.51 1.1E-05 38.4 11.8 127 35-167 23-156 (239)
377 PRK01362 putative translaldola 95.3 1.2 2.5E-05 35.8 15.5 159 14-181 41-207 (214)
378 PRK15447 putative protease; Pr 95.3 0.37 8.1E-06 40.5 11.5 114 34-167 15-142 (301)
379 PRK07084 fructose-bisphosphate 95.3 0.88 1.9E-05 38.7 13.5 141 24-168 85-273 (321)
380 cd07944 DRE_TIM_HOA_like 4-hyd 95.3 1.4 3E-05 36.4 15.9 152 2-183 8-180 (266)
381 cd00377 ICL_PEPM Members of th 95.3 0.18 3.8E-06 41.1 9.1 140 14-169 59-232 (243)
382 KOG3055 Phosphoribosylformimin 95.2 0.026 5.6E-07 44.3 3.8 51 137-187 84-135 (263)
383 COG1891 Uncharacterized protei 95.2 0.94 2E-05 35.3 12.2 161 3-171 32-216 (235)
384 TIGR01362 KDO8P_synth 3-deoxy- 95.2 0.067 1.5E-06 43.9 6.3 135 12-164 61-222 (258)
385 TIGR00559 pdxJ pyridoxine 5'-p 95.1 0.5 1.1E-05 38.4 11.1 145 9-167 2-155 (237)
386 PRK11858 aksA trans-homoaconit 95.1 0.59 1.3E-05 40.6 12.5 114 37-160 78-217 (378)
387 TIGR01520 FruBisAldo_II_A fruc 95.1 0.84 1.8E-05 39.3 13.0 153 14-168 89-292 (357)
388 PRK05265 pyridoxine 5'-phospha 95.1 0.54 1.2E-05 38.2 11.2 147 9-167 5-158 (239)
389 PRK13397 3-deoxy-7-phosphohept 95.1 0.86 1.9E-05 37.4 12.5 140 11-164 63-220 (250)
390 PRK08649 inosine 5-monophospha 95.1 0.18 4E-06 43.6 9.1 29 135-164 187-216 (368)
391 TIGR01235 pyruv_carbox pyruvat 95.1 0.082 1.8E-06 52.1 7.6 141 13-162 592-763 (1143)
392 PRK09196 fructose-1,6-bisphosp 95.0 0.88 1.9E-05 39.1 12.9 150 14-168 64-282 (347)
393 TIGR00875 fsa_talC_mipB fructo 95.0 1.5 3.2E-05 35.1 15.3 159 14-181 41-207 (213)
394 PF04309 G3P_antiterm: Glycero 95.0 0.12 2.6E-06 40.1 7.0 126 13-163 34-169 (175)
395 cd00003 PNPsynthase Pyridoxine 94.9 0.61 1.3E-05 37.8 11.1 146 10-167 3-155 (234)
396 TIGR01334 modD putative molybd 94.9 0.2 4.3E-06 41.7 8.5 86 14-104 177-264 (277)
397 cd07948 DRE_TIM_HCS Saccharomy 94.8 1.8 4E-05 35.6 14.1 121 38-163 26-161 (262)
398 PRK09197 fructose-bisphosphate 94.8 1 2.2E-05 38.7 12.7 154 14-168 82-284 (350)
399 PRK07535 methyltetrahydrofolat 94.8 0.45 9.8E-06 39.2 10.4 137 15-163 60-228 (261)
400 TIGR02090 LEU1_arch isopropylm 94.8 0.57 1.2E-05 40.4 11.4 114 38-160 75-213 (363)
401 PF04476 DUF556: Protein of un 94.7 1.9 4.1E-05 35.0 15.2 166 12-183 38-234 (235)
402 COG0826 Collagenase and relate 94.7 0.31 6.6E-06 41.9 9.4 111 40-166 19-147 (347)
403 PF04476 DUF556: Protein of un 94.6 0.5 1.1E-05 38.3 9.9 109 17-128 106-233 (235)
404 PRK05198 2-dehydro-3-deoxyphos 94.6 0.1 2.2E-06 42.9 6.0 60 11-77 68-127 (264)
405 cd00288 Pyruvate_Kinase Pyruva 94.6 1.2 2.5E-05 40.1 13.2 140 39-184 179-334 (480)
406 PTZ00314 inosine-5'-monophosph 94.6 0.16 3.5E-06 45.7 7.8 79 75-163 230-310 (495)
407 TIGR01302 IMP_dehydrog inosine 94.5 0.46 9.9E-06 42.2 10.5 77 77-163 215-293 (450)
408 TIGR01304 IMP_DH_rel_2 IMP deh 94.5 0.32 7E-06 42.2 9.1 92 63-164 121-217 (369)
409 PRK15108 biotin synthase; Prov 94.5 2.8 6E-05 36.0 17.1 162 14-181 115-307 (345)
410 TIGR01521 FruBisAldo_II_B fruc 94.5 1.4 3.1E-05 37.8 12.9 149 15-168 63-280 (347)
411 KOG0538 Glycolate oxidase [Ene 94.5 0.99 2.1E-05 38.1 11.5 70 111-183 257-333 (363)
412 PF02310 B12-binding: B12 bind 94.5 1 2.2E-05 31.9 10.5 92 63-164 17-112 (121)
413 PRK11858 aksA trans-homoaconit 94.4 3.1 6.6E-05 36.2 15.4 142 38-181 30-182 (378)
414 cd02071 MM_CoA_mut_B12_BD meth 94.4 1.3 2.9E-05 31.9 12.4 100 66-180 19-121 (122)
415 PRK09240 thiH thiamine biosynt 94.4 1.1 2.3E-05 38.8 12.3 136 39-181 165-354 (371)
416 PRK02261 methylaspartate mutas 94.4 1.5 3.3E-05 32.5 11.7 105 66-184 23-135 (137)
417 TIGR01303 IMP_DH_rel_1 IMP deh 94.4 0.61 1.3E-05 41.8 10.9 66 88-163 228-294 (475)
418 PRK08255 salicylyl-CoA 5-hydro 94.3 1 2.2E-05 42.7 12.9 124 42-172 559-726 (765)
419 TIGR02321 Pphn_pyruv_hyd phosp 94.3 1 2.2E-05 37.8 11.5 155 13-180 64-254 (290)
420 PRK09389 (R)-citramalate synth 94.3 1.7 3.6E-05 39.2 13.5 114 38-160 77-215 (488)
421 COG0069 GltB Glutamate synthas 94.3 0.36 7.9E-06 43.1 9.1 121 44-165 269-405 (485)
422 PRK06739 pyruvate kinase; Vali 94.1 1.3 2.8E-05 38.2 11.9 138 38-184 169-326 (352)
423 cd00946 FBP_aldolase_IIA Class 94.1 3.1 6.7E-05 35.8 14.1 154 14-168 77-280 (345)
424 PRK02227 hypothetical protein; 94.0 0.78 1.7E-05 37.3 9.9 111 17-130 106-234 (238)
425 PF09370 TIM-br_sig_trns: TIM- 93.9 3.2 6.9E-05 34.4 14.4 149 17-169 73-252 (268)
426 PRK00915 2-isopropylmalate syn 93.8 1.2 2.5E-05 40.4 11.7 141 14-160 56-225 (513)
427 TIGR03128 RuMP_HxlA 3-hexulose 93.7 1.8 3.9E-05 33.8 11.5 111 38-163 16-133 (206)
428 TIGR00262 trpA tryptophan synt 93.7 2.3 4.9E-05 35.0 12.4 147 25-183 10-197 (256)
429 TIGR01361 DAHP_synth_Bsub phos 93.7 2.6 5.7E-05 34.7 12.7 145 11-167 73-233 (260)
430 PRK00507 deoxyribose-phosphate 93.6 1.8 3.9E-05 34.8 11.3 112 40-160 80-205 (221)
431 PLN02274 inosine-5'-monophosph 93.5 0.38 8.3E-06 43.4 8.1 78 75-163 237-317 (505)
432 PF03599 CdhD: CO dehydrogenas 93.5 0.95 2.1E-05 39.4 10.1 149 14-178 88-250 (386)
433 cd00739 DHPS DHPS subgroup of 93.5 3.1 6.8E-05 34.2 12.8 61 15-82 67-128 (257)
434 TIGR01064 pyruv_kin pyruvate k 93.5 2.5 5.5E-05 37.9 13.1 139 40-184 177-332 (473)
435 cd03316 MR_like Mandelate race 93.4 1.1 2.5E-05 38.1 10.6 119 35-163 139-270 (357)
436 PRK12656 fructose-6-phosphate 93.4 3.4 7.4E-05 33.3 16.7 158 14-180 42-210 (222)
437 PLN02858 fructose-bisphosphate 93.4 1.9 4E-05 43.7 13.2 147 19-168 1164-1336(1378)
438 PRK12653 fructose-6-phosphate 93.3 3.5 7.7E-05 33.1 14.9 159 14-181 41-209 (220)
439 KOG1643 Triosephosphate isomer 93.3 3 6.5E-05 33.3 11.6 129 40-168 79-236 (247)
440 TIGR00676 fadh2 5,10-methylene 93.3 4.1 8.9E-05 33.7 13.9 134 40-181 21-181 (272)
441 PRK05567 inosine 5'-monophosph 93.2 1.2 2.6E-05 40.0 10.8 116 38-163 169-297 (486)
442 PRK13398 3-deoxy-7-phosphohept 93.1 3.3 7.2E-05 34.3 12.4 142 11-167 75-235 (266)
443 COG1954 GlpP Glycerol-3-phosph 93.0 1.6 3.4E-05 33.8 9.5 81 64-160 85-170 (181)
444 PRK09206 pyruvate kinase; Prov 93.0 3.6 7.7E-05 36.9 13.2 140 39-184 177-333 (470)
445 COG0502 BioB Biotin synthase a 93.0 4.9 0.00011 34.4 13.4 163 14-181 122-314 (335)
446 PLN03033 2-dehydro-3-deoxyphos 93.0 0.28 6.1E-06 40.8 5.8 60 11-77 74-133 (290)
447 PF09587 PGA_cap: Bacterial ca 92.9 0.77 1.7E-05 37.3 8.4 42 36-77 64-108 (250)
448 TIGR01501 MthylAspMutase methy 92.8 3.1 6.6E-05 30.9 11.3 102 66-183 21-132 (134)
449 PRK13399 fructose-1,6-bisphosp 92.7 5.9 0.00013 34.1 13.6 149 15-168 65-282 (347)
450 PRK12344 putative alpha-isopro 92.7 2 4.4E-05 39.0 11.4 114 38-160 89-230 (524)
451 cd00958 DhnA Class I fructose- 92.6 2.4 5.2E-05 33.9 10.8 120 34-163 21-163 (235)
452 PRK10076 pyruvate formate lyas 92.6 1.8 3.8E-05 34.6 9.8 68 35-102 20-95 (213)
453 cd03315 MLE_like Muconate lact 92.6 3.4 7.4E-05 33.7 11.8 128 25-163 75-210 (265)
454 cd08207 RLP_NonPhot Ribulose b 92.6 1.4 2.9E-05 38.8 9.8 46 139-184 335-384 (406)
455 COG2185 Sbm Methylmalonyl-CoA 92.5 1.7 3.8E-05 32.6 9.0 104 66-184 32-138 (143)
456 PF01729 QRPTase_C: Quinolinat 92.5 0.64 1.4E-05 35.8 7.0 85 13-102 67-154 (169)
457 cd00453 FTBP_aldolase_II Fruct 92.5 4.4 9.5E-05 34.7 12.5 152 15-168 76-277 (340)
458 PF13277 YmdB: YmdB-like prote 92.5 0.15 3.2E-06 41.8 3.5 47 141-187 41-87 (253)
459 PRK11815 tRNA-dihydrouridine s 92.4 1.1 2.4E-05 38.2 9.0 96 7-102 116-232 (333)
460 PRK06267 hypothetical protein; 92.4 6.5 0.00014 33.7 13.8 111 61-176 153-283 (350)
461 COG2513 PrpB PEP phosphonomuta 92.4 0.45 9.9E-06 39.7 6.3 145 13-169 67-240 (289)
462 PRK07896 nicotinate-nucleotide 92.4 1.7 3.8E-05 36.4 9.8 84 14-102 188-273 (289)
463 cd02070 corrinoid_protein_B12- 92.3 3.1 6.8E-05 32.7 10.9 94 66-179 102-199 (201)
464 PRK13396 3-deoxy-7-phosphohept 92.3 3.7 8E-05 35.4 12.0 143 11-167 149-310 (352)
465 PRK09250 fructose-bisphosphate 92.3 1.9 4.2E-05 37.0 10.1 117 34-162 91-236 (348)
466 cd04724 Tryptophan_synthase_al 92.3 3.1 6.6E-05 33.8 11.0 144 27-182 2-185 (242)
467 COG0107 HisF Imidazoleglycerol 92.2 5.5 0.00012 32.4 12.2 119 39-168 88-233 (256)
468 cd04736 MDH_FMN Mandelate dehy 92.1 2.5 5.5E-05 36.6 10.8 60 118-182 224-287 (361)
469 PRK12595 bifunctional 3-deoxy- 92.1 3.6 7.7E-05 35.6 11.7 142 10-166 165-325 (360)
470 PTZ00170 D-ribulose-5-phosphat 92.1 4.8 0.0001 32.4 11.9 124 26-160 8-142 (228)
471 PRK02227 hypothetical protein; 92.0 5.7 0.00012 32.3 13.4 164 12-184 38-234 (238)
472 PRK05437 isopentenyl pyrophosp 92.0 1.8 3.9E-05 37.3 9.8 96 63-164 107-218 (352)
473 PRK12655 fructose-6-phosphate 92.0 5.5 0.00012 32.0 14.9 159 14-181 41-209 (220)
474 cd03319 L-Ala-DL-Glu_epimerase 91.9 2.2 4.8E-05 35.8 10.2 123 34-167 133-262 (316)
475 PRK11750 gltB glutamate syntha 91.8 1.4 3E-05 44.4 9.9 127 39-165 955-1098(1485)
476 cd00959 DeoC 2-deoxyribose-5-p 91.8 3.4 7.4E-05 32.5 10.6 138 35-183 18-171 (203)
477 cd07939 DRE_TIM_NifV Streptomy 91.8 6.3 0.00014 32.2 14.6 125 37-163 23-159 (259)
478 TIGR02351 thiH thiazole biosyn 91.7 2.6 5.6E-05 36.4 10.6 124 14-145 141-300 (366)
479 smart00812 Alpha_L_fucos Alpha 91.7 2.8 6.1E-05 36.6 10.8 121 34-164 81-234 (384)
480 TIGR00737 nifR3_yhdG putative 91.7 2.6 5.6E-05 35.6 10.4 93 10-102 117-221 (319)
481 PF01791 DeoC: DeoC/LacD famil 91.7 2.4 5.3E-05 34.0 9.8 141 35-184 20-186 (236)
482 TIGR00126 deoC deoxyribose-pho 91.7 5.8 0.00013 31.7 12.8 143 8-160 34-201 (211)
483 PF00834 Ribul_P_3_epim: Ribul 91.6 1.5 3.3E-05 34.7 8.3 122 30-165 5-136 (201)
484 PRK08385 nicotinate-nucleotide 91.6 2.7 5.8E-05 35.1 10.1 85 14-103 171-259 (278)
485 PRK06096 molybdenum transport 91.6 1.4 3E-05 36.9 8.4 84 14-102 178-263 (284)
486 cd02072 Glm_B12_BD B12 binding 91.5 4.3 9.3E-05 29.9 11.7 97 68-180 21-127 (128)
487 TIGR02090 LEU1_arch isopropylm 91.5 8.5 0.00018 33.2 15.5 144 37-182 25-179 (363)
488 cd06822 PLPDE_III_YBL036c_euk 91.5 3.2 7E-05 33.5 10.2 153 10-168 48-227 (227)
489 PRK08673 3-deoxy-7-phosphohept 91.4 8.2 0.00018 33.1 13.1 142 11-167 141-301 (335)
490 PRK07259 dihydroorotate dehydr 91.4 4.4 9.6E-05 33.8 11.4 114 13-133 146-288 (301)
491 cd07947 DRE_TIM_Re_CS Clostrid 91.3 3.1 6.6E-05 34.7 10.2 129 26-160 68-232 (279)
492 TIGR00486 YbgI_SA1388 dinuclea 91.3 4.8 0.0001 32.8 11.2 125 34-164 43-196 (249)
493 PRK04452 acetyl-CoA decarbonyl 91.3 4.8 0.0001 34.3 11.4 117 14-139 114-245 (319)
494 PRK06354 pyruvate kinase; Prov 91.2 6.7 0.00015 36.2 13.1 140 39-184 183-339 (590)
495 PF14871 GHL6: Hypothetical gl 91.2 1.4 3E-05 32.5 7.3 53 35-87 1-70 (132)
496 PRK07107 inosine 5-monophospha 91.2 0.72 1.6E-05 41.6 6.8 77 77-163 234-312 (502)
497 cd07947 DRE_TIM_Re_CS Clostrid 91.1 4 8.8E-05 34.0 10.7 124 37-163 24-170 (279)
498 TIGR00677 fadh2_euk methylenet 91.1 8.1 0.00018 32.2 13.0 137 38-181 20-185 (281)
499 TIGR03471 HpnJ hopanoid biosyn 91.1 0.56 1.2E-05 41.7 6.0 79 14-94 265-359 (472)
500 COG0320 LipA Lipoate synthase 91.0 6.3 0.00014 32.9 11.4 130 35-168 101-253 (306)
No 1
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-62 Score=383.35 Aligned_cols=181 Identities=57% Similarity=0.898 Sum_probs=175.2
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
||||||||+||||..+++||+.++.|+||||||.+|++|++.++++|||+||||.|+ .+++.++++.||++|+++|++
T Consensus 38 MDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~--~~~~~r~i~~Ik~~G~kaGv~ 115 (220)
T COG0036 38 MDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEA--TEHIHRTIQLIKELGVKAGLV 115 (220)
T ss_pred cCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEecc--CcCHHHHHHHHHHcCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999996 678999999999999999999
Q ss_pred EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661 81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~ 160 (190)
+||.||++.++++++.+|+|++|||+|||+||+|+|.+++||+++|+++++++ ++.|+||||||.+|++++.++|||++
T Consensus 116 lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~ 194 (220)
T COG0036 116 LNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVF 194 (220)
T ss_pred ECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999998766 88999999999999999999999999
Q ss_pred EEcccccCCCCHHHHHHHHHHhhc
Q 029661 161 VAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
|+||++|+++|..+.++.++....
T Consensus 195 VaGSalF~~~d~~~~i~~~~~~~~ 218 (220)
T COG0036 195 VAGSALFGADDYKATIRELRGELL 218 (220)
T ss_pred EEEEEEeCCccHHHHHHHHHHHhh
Confidence 999999999999999999987654
No 2
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=1.7e-60 Score=381.48 Aligned_cols=183 Identities=47% Similarity=0.771 Sum_probs=176.6
Q ss_pred CCccccCcCCCCHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV 79 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~ 79 (190)
||||||||++||++++++||+. ++.|+|+|||+.||++|++.+.++|||+|++|+|+ ..++.++++.+|++|+++|+
T Consensus 38 mDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea--~~~~~~~l~~Ir~~g~k~Gl 115 (223)
T PRK08745 38 MDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEA--SRHVHRTIQLIKSHGCQAGL 115 (223)
T ss_pred ccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC--cccHHHHHHHHHHCCCceeE
Confidence 9999999999999999999998 79999999999999999999999999999999997 46799999999999999999
Q ss_pred EEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCE
Q 029661 80 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA 159 (190)
Q Consensus 80 ~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~ 159 (190)
++||.||++.++++++.+|+|++|||+|||+||+|++.+++||+++|+++++++.++.|+||||||.+|++++.++|||+
T Consensus 116 alnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi 195 (223)
T PRK08745 116 VLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADT 195 (223)
T ss_pred EeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999888778899999999999999999999999
Q ss_pred EEEcccccCCCCHHHHHHHHHHhhcc
Q 029661 160 LVAGSAVFGAKDYAEAIKGIKTSKRP 185 (190)
Q Consensus 160 ~VvGsaI~~~~dp~~~~~~l~~~~~~ 185 (190)
+|+||+||+++||.++++++++.++.
T Consensus 196 ~V~GSaiF~~~d~~~~~~~lr~~~~~ 221 (223)
T PRK08745 196 FVAGSAIFNAPDYAQVIAQMRAAVAA 221 (223)
T ss_pred EEEChhhhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987653
No 3
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=4.8e-59 Score=373.77 Aligned_cols=183 Identities=36% Similarity=0.674 Sum_probs=174.4
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
||||||||++||++++++||++|++|+|+|||+.||++|++.+.++|||+|++|+|+. ..++.++++.+|++|+++|++
T Consensus 36 MDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~-~~~~~~~i~~Ik~~G~kaGla 114 (229)
T PRK09722 36 MDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETI-NGQAFRLIDEIRRAGMKVGLV 114 (229)
T ss_pred ccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCC-cchHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999962 347899999999999999999
Q ss_pred EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661 81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~ 160 (190)
+||.||++.++++++.+|+|++|||+|||+||+|+|.+++||+++|++++++++++.|+||||||.+|++++.++|||++
T Consensus 115 lnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~ 194 (229)
T PRK09722 115 LNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVF 194 (229)
T ss_pred eCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred EEcc-cccC-CCCHHHHHHHHHHhhc
Q 029661 161 VAGS-AVFG-AKDYAEAIKGIKTSKR 184 (190)
Q Consensus 161 VvGs-aI~~-~~dp~~~~~~l~~~~~ 184 (190)
|+|| +||+ .+|+.+.++.+|+.++
T Consensus 195 V~Gss~iF~~~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 195 IVGTSGLFNLDEDIDEAWDIMTAQIE 220 (229)
T ss_pred EEChHHHcCCCCCHHHHHHHHHHHHH
Confidence 9996 5998 5789999999998665
No 4
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=6.3e-59 Score=372.02 Aligned_cols=179 Identities=27% Similarity=0.407 Sum_probs=172.8
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC--cEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA--KAG 78 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~--~~g 78 (190)
||||||||++|||+++++||+ +.|+|+|||+.||++|++.+.++|||++++|+|+ ..++.++++.+|++|+ ++|
T Consensus 47 MDG~FVPNitfGp~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea--~~~~~~~l~~Ik~~g~~~kaG 122 (228)
T PRK08091 47 ADGQFSPFFTVGAIAIKQFPT--HCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQ--THDLALTIEWLAKQKTTVLIG 122 (228)
T ss_pred cCCCcCCccccCHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC--cccHHHHHHHHHHCCCCceEE
Confidence 999999999999999999984 7899999999999999999999999999999997 4678999999999999 999
Q ss_pred EEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC
Q 029661 79 VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN 158 (190)
Q Consensus 79 ~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad 158 (190)
+++||.||++.++++++.+|+|++|||+|||+||+|++.+++||+++|++++++++++.|+||||||.+|++++.++|||
T Consensus 123 lalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD 202 (228)
T PRK08091 123 LCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQID 202 (228)
T ss_pred EEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred EEEEcccccCCCCHHHHHHHHHHhh
Q 029661 159 ALVAGSAVFGAKDYAEAIKGIKTSK 183 (190)
Q Consensus 159 ~~VvGsaI~~~~dp~~~~~~l~~~~ 183 (190)
++|+||+||+++|+++.+++|++.+
T Consensus 203 ~~V~GSalF~~~d~~~~i~~l~~~~ 227 (228)
T PRK08091 203 WVVSGSALFSQGELKTTLKEWKSSL 227 (228)
T ss_pred EEEEChhhhCCCCHHHHHHHHHHhh
Confidence 9999999999999999999999865
No 5
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=1.9e-58 Score=369.75 Aligned_cols=183 Identities=47% Similarity=0.798 Sum_probs=176.6
Q ss_pred CCccccCcCCCCHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV 79 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~ 79 (190)
||||||||++|||+++++||++ ++.|+|+||||.||++|++.+.++|||++++|.|+ ..++.++++.+|++|+++|+
T Consensus 34 mDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea--~~~~~~~l~~ik~~g~k~Gl 111 (220)
T PRK08883 34 MDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEA--SEHVDRTLQLIKEHGCQAGV 111 (220)
T ss_pred ccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC--cccHHHHHHHHHHcCCcEEE
Confidence 9999999999999999999998 79999999999999999999999999999999997 56799999999999999999
Q ss_pred EEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCE
Q 029661 80 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA 159 (190)
Q Consensus 80 ~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~ 159 (190)
++||.||++.++++++.+|+|++|||+||++||+|.+.+++||+++|+++++++++++|+||||||++|++++.++|||+
T Consensus 112 alnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~ 191 (220)
T PRK08883 112 VLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADM 191 (220)
T ss_pred EeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999887888999999999999999999999999
Q ss_pred EEEcccccCCCCHHHHHHHHHHhhcc
Q 029661 160 LVAGSAVFGAKDYAEAIKGIKTSKRP 185 (190)
Q Consensus 160 ~VvGsaI~~~~dp~~~~~~l~~~~~~ 185 (190)
+|+||+||+++|+.++++++++.++.
T Consensus 192 vVvGSaIf~~~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 192 FVAGSAIFGQPDYKAVIDEMRAELAK 217 (220)
T ss_pred EEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987654
No 6
>PRK08005 epimerase; Validated
Probab=100.00 E-value=3.9e-58 Score=364.21 Aligned_cols=175 Identities=31% Similarity=0.462 Sum_probs=167.4
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
||||||||++||++++++||+.++.|+|+|||+.||++|++.+.++|||+|++|.|+ ..++.++++.+|++|+++|++
T Consensus 35 MDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea--~~~~~~~l~~Ik~~G~k~GlA 112 (210)
T PRK08005 35 EDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAES--VQNPSEILADIRAIGAKAGLA 112 (210)
T ss_pred cCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccC--ccCHHHHHHHHHHcCCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999997 467899999999999999999
Q ss_pred EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661 81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~ 160 (190)
+||.||++.++++++.+|+|++|+|+|||+||+|++.+++||+++|+++++ ..|+||||||.+|+++++++|||++
T Consensus 113 lnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~----~~I~VDGGI~~~~i~~l~~aGad~~ 188 (210)
T PRK08005 113 LNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPA----AECWADGGITLRAARLLAAAGAQHL 188 (210)
T ss_pred ECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhccc----CCEEEECCCCHHHHHHHHHCCCCEE
Confidence 999999999999999999999999999999999999999999999999865 3599999999999999999999999
Q ss_pred EEcccccCCCCHHHHHHHHHH
Q 029661 161 VAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l~~ 181 (190)
|+||+||+++|+++.++.|..
T Consensus 189 V~GsaiF~~~d~~~~~~~~~~ 209 (210)
T PRK08005 189 VIGRALFTTANYDVTLSQFTA 209 (210)
T ss_pred EEChHhhCCCCHHHHHHHHhc
Confidence 999999998899999888753
No 7
>PRK14057 epimerase; Provisional
Probab=100.00 E-value=1.2e-57 Score=368.63 Aligned_cols=180 Identities=29% Similarity=0.493 Sum_probs=172.8
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-----
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA----- 75 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~----- 75 (190)
||||||||++|||+++++||+ +.|+|+|||+.||++|++.+.++|||+|++|+|+ ..++.++++.+|++|+
T Consensus 54 MDG~FVPNitfGp~~i~~i~~--~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~Ea--~~~~~~~l~~Ir~~G~k~~~~ 129 (254)
T PRK14057 54 MDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLMVADQWTAAQACVKAGAHCITLQAEG--DIHLHHTLSWLGQQTVPVIGG 129 (254)
T ss_pred cCCccCCccccCHHHHHHhcc--CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeecc--ccCHHHHHHHHHHcCCCcccc
Confidence 999999999999999999986 6899999999999999999999999999999997 4679999999999997
Q ss_pred ----cEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHH
Q 029661 76 ----KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK 151 (190)
Q Consensus 76 ----~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~ 151 (190)
++|+++||.||++.++++++.+|+|++|||+|||+||+|++.+++||+++|++++++++++.|+||||||.+|+++
T Consensus 130 ~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~ 209 (254)
T PRK14057 130 EMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPS 209 (254)
T ss_pred cccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 152 VIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 152 ~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
+.++|||++|+||++|+++|+++.+++|++.+.
T Consensus 210 l~~aGad~~V~GSalF~~~d~~~~i~~l~~~~~ 242 (254)
T PRK14057 210 LIAQGIDRVVSGSALFRDDRLVENTRSWRAMFK 242 (254)
T ss_pred HHHCCCCEEEEChHhhCCCCHHHHHHHHHHHHh
Confidence 999999999999999998899999999987654
No 8
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-56 Score=341.73 Aligned_cols=182 Identities=47% Similarity=0.718 Sum_probs=172.5
Q ss_pred CCccccCcCCCCHHHHHHhccCCCC--cEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDL--PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG 78 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~--~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g 78 (190)
||||||||+|||+.+|+.||+.++. ++|+||||.+|++|+++++++||+.+|||+|+ .+.+.++++.+|+.|+++|
T Consensus 39 MDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E~--~q~~~~lv~~ir~~Gmk~G 116 (224)
T KOG3111|consen 39 MDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYEA--TQKPAELVEKIREKGMKVG 116 (224)
T ss_pred ecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEee--ccCHHHHHHHHHHcCCeee
Confidence 9999999999999999999998666 59999999999999999999999999999997 5679999999999999999
Q ss_pred EEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC
Q 029661 79 VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN 158 (190)
Q Consensus 79 ~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad 158 (190)
++++|.||++.++++++.+|.+++|||+|||+||+|.++++.|++.+|+..+ +..|+||||++++|+..+.+||||
T Consensus 117 ~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp----~l~ievDGGv~~~ti~~~a~AGAN 192 (224)
T KOG3111|consen 117 LALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYP----NLDIEVDGGVGPSTIDKAAEAGAN 192 (224)
T ss_pred EEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCC----CceEEecCCcCcchHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999996554 578999999999999999999999
Q ss_pred EEEEcccccCCCCHHHHHHHHHHhhccccc
Q 029661 159 ALVAGSAVFGAKDYAEAIKGIKTSKRPQAV 188 (190)
Q Consensus 159 ~~VvGsaI~~~~dp~~~~~~l~~~~~~~~~ 188 (190)
.+|+||++|++.||.++++.||++..+++.
T Consensus 193 ~iVaGsavf~a~d~~~vi~~lr~~v~~a~~ 222 (224)
T KOG3111|consen 193 MIVAGSAVFGAADPSDVISLLRNSVEKAAC 222 (224)
T ss_pred EEEecceeecCCCHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999998776554
No 9
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=100.00 E-value=1.6e-56 Score=353.86 Aligned_cols=168 Identities=51% Similarity=0.861 Sum_probs=153.7
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
||||||||++||++.+++||+++++|+|+|||+.||.+|++.+.++|+|+|++|.|+ .+++.++++.+|++|+++|++
T Consensus 34 MDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~--~~~~~~~i~~ik~~g~k~Gia 111 (201)
T PF00834_consen 34 MDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEA--TEDPKETIKYIKEAGIKAGIA 111 (201)
T ss_dssp EBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGG--TTTHHHHHHHHHHTTSEEEEE
T ss_pred cccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccc--hhCHHHHHHHHHHhCCCEEEE
Confidence 899999999999999999999999999999999999999999999999999999996 578999999999999999999
Q ss_pred EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661 81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~ 160 (190)
+||.||++.++++++.+|+|++|+|+||++||+|++.+++||+++|+++++++.++.|+||||||.+|++++.++|||++
T Consensus 112 lnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~ 191 (201)
T PF00834_consen 112 LNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIF 191 (201)
T ss_dssp E-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EE
T ss_pred EECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EEcccccCCC
Q 029661 161 VAGSAVFGAK 170 (190)
Q Consensus 161 VvGsaI~~~~ 170 (190)
|+||+||+++
T Consensus 192 V~Gs~iF~~~ 201 (201)
T PF00834_consen 192 VAGSAIFKAD 201 (201)
T ss_dssp EESHHHHTS-
T ss_pred EECHHHhCCC
Confidence 9999999863
No 10
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=1.7e-50 Score=325.90 Aligned_cols=179 Identities=41% Similarity=0.683 Sum_probs=169.3
Q ss_pred CCccccCcCCCCHHHHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV 79 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~ 79 (190)
||||||||++||++++++||+.+ ++++|+|||+.+|+.+++.++++|+|++|+|+|++ ..++.++++.+|++|+++|+
T Consensus 41 mDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~-~~~~~~~l~~ik~~G~~~gv 119 (228)
T PTZ00170 41 MDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEAT-EDDPKAVARKIREAGMKVGV 119 (228)
T ss_pred ccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCC-chHHHHHHHHHHHCCCeEEE
Confidence 89999999999999999999985 99999999999999999999999999999999973 43489999999999999999
Q ss_pred EEcCCCCHHHHHHhh--cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCC
Q 029661 80 VLNPATSLSAIECVL--DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA 157 (190)
Q Consensus 80 ~i~p~t~~~~~~~~~--~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGa 157 (190)
+++|+||++.+++++ +.+|+|++|+++||++||.|.+..+++++++|+++++ +.|+||||||++|++.+.++||
T Consensus 120 al~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~----~~I~VdGGI~~~ti~~~~~aGa 195 (228)
T PTZ00170 120 AIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPH----LNIQVDGGINLETIDIAADAGA 195 (228)
T ss_pred EECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhccc----CeEEECCCCCHHHHHHHHHcCC
Confidence 999999999999999 7899999999999999999999999999999998753 6799999999999999999999
Q ss_pred CEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 158 NALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 158 d~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
|++|+||+||+++||.++++++++.++
T Consensus 196 d~iVvGsaI~~a~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 196 NVIVAGSSIFKAKDRKQAIELLRESVQ 222 (228)
T ss_pred CEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998765
No 11
>PLN02334 ribulose-phosphate 3-epimerase
Probab=100.00 E-value=2.7e-44 Score=290.17 Aligned_cols=185 Identities=63% Similarity=0.937 Sum_probs=174.3
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEccc-CCCcchHHHHHHHHHHhCCcEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE-QSSTIHLHRTLNQIKDLGAKAGV 79 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e-~~~~~~~~~~i~~i~~~g~~~g~ 79 (190)
|||+|+||++||++.+++||+.++.++++|||++||.++++.+.++|||+|++|.| + ..+++.+.++.++++|+++|+
T Consensus 42 ~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~-~~d~~~~~~~~i~~~g~~iGl 120 (229)
T PLN02334 42 MDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQA-STIHLHRLIQQIKSAGMKAGV 120 (229)
T ss_pred ccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeeccc-cchhHHHHHHHHHHCCCeEEE
Confidence 89999999999999999999999999999999999999999999999999999999 2 145788999999999999999
Q ss_pred EEcCCCCHHHHHHhhcc--cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCC
Q 029661 80 VLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA 157 (190)
Q Consensus 80 ~i~p~t~~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGa 157 (190)
+++|+|+.+.++++++. +|||++|+++||+++|.|.+..++++++++++..+ .+|+++||||++|++++.++||
T Consensus 121 s~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~----~~I~a~GGI~~e~i~~l~~aGa 196 (229)
T PLN02334 121 VLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPE----LDIEVDGGVGPSTIDKAAEAGA 196 (229)
T ss_pred EECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCC----CcEEEeCCCCHHHHHHHHHcCC
Confidence 99999999999999988 99999999999999999999999999999987643 5799999999999999999999
Q ss_pred CEEEEcccccCCCCHHHHHHHHHHhhccccccC
Q 029661 158 NALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 190 (190)
Q Consensus 158 d~~VvGsaI~~~~dp~~~~~~l~~~~~~~~~~~ 190 (190)
|++|+||+||+++||.+++++|++.++..+|||
T Consensus 197 d~vvvgsai~~~~d~~~~~~~l~~~~~~~~~~~ 229 (229)
T PLN02334 197 NVIVAGSAVFGAPDYAEVISGLRASVEKAAVAV 229 (229)
T ss_pred CEEEEChHHhCCCCHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999888876
No 12
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=100.00 E-value=1.1e-36 Score=241.72 Aligned_cols=178 Identities=60% Similarity=0.963 Sum_probs=165.1
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
|||+|+||+++|++.+++|++.++.++++|+|++++.+|++.+.++|+|++++|.+. .++..+.++.+|++|.++++.
T Consensus 33 ~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~--~~~~~~~~~~~~~~g~~~~~~ 110 (210)
T TIGR01163 33 MDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEA--SEHIHRLLQLIKDLGAKAGIV 110 (210)
T ss_pred CCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCC--chhHHHHHHHHHHcCCcEEEE
Confidence 799999999999999999998888899999999999999999999999999999985 456788999999999999999
Q ss_pred EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661 81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~ 160 (190)
++++|+.++++++...+|++++|+++||.+|+.|.+..++++++++++.++.+.++++.++||||++|++++.+.|||++
T Consensus 111 ~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~i 190 (210)
T TIGR01163 111 LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADIL 190 (210)
T ss_pred ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEE
Confidence 99999999999988889999999999999999999999999999999987655557899999999999999999999999
Q ss_pred EEcccccCCCCHHHHHHHHH
Q 029661 161 VAGSAVFGAKDYAEAIKGIK 180 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l~ 180 (190)
|+||+||+++||.+++++++
T Consensus 191 ivgsai~~~~d~~~~~~~~~ 210 (210)
T TIGR01163 191 VAGSAIFGADDYKEVIRSLR 210 (210)
T ss_pred EEChHHhCCCCHHHHHHHhC
Confidence 99999999999999988763
No 13
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=3e-36 Score=241.12 Aligned_cols=181 Identities=59% Similarity=0.955 Sum_probs=165.6
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
|||.|+||++++++.++++++.++.++++|||++++.++++.+.++|+|++++|.+. .++..+.++.++++|+++|++
T Consensus 38 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~--~~~~~~~~~~~~~~~~~~g~~ 115 (220)
T PRK05581 38 MDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVEA--SEHIHRLLQLIKSAGIKAGLV 115 (220)
T ss_pred ccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeecc--chhHHHHHHHHHHcCCEEEEE
Confidence 799999999999999999998755789999999999999999999999999999986 467788999999999999999
Q ss_pred EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661 81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~ 160 (190)
++|+|+.++++++...+|++++|+++||.+||.+.+..++++++++++.+.++.++.|+++||||++|++++.++|+|++
T Consensus 116 ~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~v 195 (220)
T PRK05581 116 LNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVF 195 (220)
T ss_pred ECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 99999999999888889999999999999999999999999999998876533335688999999999999999999999
Q ss_pred EEcccccCCCCHHHHHHHHHHhh
Q 029661 161 VAGSAVFGAKDYAEAIKGIKTSK 183 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l~~~~ 183 (190)
|+||+||+++||.++++++++.+
T Consensus 196 vvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 196 VAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred EEChhhhCCCCHHHHHHHHHHHh
Confidence 99999999999999999998753
No 14
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=100.00 E-value=2.9e-34 Score=227.75 Aligned_cols=178 Identities=59% Similarity=0.917 Sum_probs=164.4
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
|||.|.|+..+|++.+++|++.++.++++|||++||.++++.+.++|+|++++|.+. .++..+.++.++++|+++|++
T Consensus 34 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~--~~~~~~~~~~~~~~~~~~g~~ 111 (211)
T cd00429 34 MDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAEA--TDHLHRTIQLIKELGMKAGVA 111 (211)
T ss_pred ccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccc--hhhHHHHHHHHHHCCCeEEEE
Confidence 699999999999999999998667899999999999999999999999999999985 456788999999999999999
Q ss_pred EcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661 81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~ 160 (190)
++++|+.++++++...+|++++++++||.+|+.+.+..+++++++|++.++++.+.++.++|||+++|++++.++|||++
T Consensus 112 ~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~i 191 (211)
T cd00429 112 LNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVL 191 (211)
T ss_pred ecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEE
Confidence 99989988888887779999999999999999999999999999999987666667999999999999999999999999
Q ss_pred EEcccccCCCCHHHHHHHHH
Q 029661 161 VAGSAVFGAKDYAEAIKGIK 180 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l~ 180 (190)
|+||+||+++||.++++++|
T Consensus 192 ivgsai~~~~~~~~~~~~~~ 211 (211)
T cd00429 192 VAGSALFGSDDYAEAIKELR 211 (211)
T ss_pred EECHHHhCCCCHHHHHHHhC
Confidence 99999999999999998874
No 15
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=100.00 E-value=4.8e-33 Score=222.61 Aligned_cols=169 Identities=21% Similarity=0.265 Sum_probs=153.8
Q ss_pred CCCCHHHHHHhccC-CCCcEEEEEeecChHHHHH-HHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661 9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVP-DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 86 (190)
Q Consensus 9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~-~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~ 86 (190)
+++|++.|++||+. +++++++|||+.|+.+++. .++++|+|++|+|+++ +.+++.++++.++++|+++|+++.|+++
T Consensus 40 ~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a-~~~~i~~~~~~~~~~g~~~~V~llts~~ 118 (216)
T PRK13306 40 LAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAA-HIPTIKAALKVAKEFNGEIQIELYGNWT 118 (216)
T ss_pred HHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCC-CHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence 46899999999986 8999999999999988866 7899999999999998 4677999999999999999999999999
Q ss_pred HHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661 87 LSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 87 ~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGs 164 (190)
.+.+++.++ ..|+++.|++.||++||.|.+..+++|+++++. ++.|+|+|||++++++.+.++|||++|+||
T Consensus 119 ~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~------~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr 192 (216)
T PRK13306 119 WEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDM------GFKVSVTGGLVVEDLKLFKGIPVKTFIAGR 192 (216)
T ss_pred HHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcC------CCeEEEcCCCCHhhHHHHhcCCCCEEEECC
Confidence 999887666 578999999999999999999999999887651 356999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhhc
Q 029661 165 AVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 165 aI~~~~dp~~~~~~l~~~~~ 184 (190)
+||+++||.++++++++.++
T Consensus 193 ~I~~a~dp~~a~~~i~~~i~ 212 (216)
T PRK13306 193 AIRGAADPAAAARAFKDEIA 212 (216)
T ss_pred cccCCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 16
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=100.00 E-value=7.4e-33 Score=237.09 Aligned_cols=166 Identities=21% Similarity=0.294 Sum_probs=149.8
Q ss_pred CCCCHHHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE-EEcCCC
Q 029661 9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPAT 85 (190)
Q Consensus 9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~-~i~p~t 85 (190)
++||++.|++||+. +++++++|||+.||.++ ++.++++|+|++|+|+|+ +.+++.++++.+|++|+++++ ++||.|
T Consensus 210 ~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea-~~~ti~~ai~~akk~GikvgVD~lnp~t 288 (391)
T PRK13307 210 KKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLA-PISTIEKAIHEAQKTGIYSILDMLNVED 288 (391)
T ss_pred HHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEEcCCCC
Confidence 46899999999997 88999999999999998 788999999999999997 356799999999999999999 999999
Q ss_pred CHHHHHHhhcccceEEEEe-eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661 86 SLSAIECVLDVVDLVLIMS-VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 86 ~~~~~~~~~~~~d~i~~m~-v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGs 164 (190)
|.+.++++...+|+|++|+ ++|| +| +..+++|+++|++ +.++.|+|||||+++++++++++|||++|+||
T Consensus 289 p~e~i~~l~~~vD~Vllht~vdp~--~~---~~~~~kI~~ikk~----~~~~~I~VdGGI~~eti~~l~~aGADivVVGs 359 (391)
T PRK13307 289 PVKLLESLKVKPDVVELHRGIDEE--GT---EHAWGNIKEIKKA----GGKILVAVAGGVRVENVEEALKAGADILVVGR 359 (391)
T ss_pred HHHHHHHhhCCCCEEEEccccCCC--cc---cchHHHHHHHHHh----CCCCcEEEECCcCHHHHHHHHHcCCCEEEEeH
Confidence 9999999877899999997 8888 33 3366788888877 23578999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhhc
Q 029661 165 AVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 165 aI~~~~dp~~~~~~l~~~~~ 184 (190)
+||+++||.++++++++.++
T Consensus 360 aIf~a~Dp~~aak~l~~~i~ 379 (391)
T PRK13307 360 AITKSKDVRRAAEDFLNKLK 379 (391)
T ss_pred HHhCCCCHHHHHHHHHHhhc
Confidence 99999999999999998764
No 17
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.98 E-value=1e-32 Score=220.45 Aligned_cols=171 Identities=21% Similarity=0.262 Sum_probs=148.8
Q ss_pred CCCCHHHHHHhccCCCCcEEEEEe-ec-ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661 9 ITIGPLVVDALRPVTDLPLDVHLM-IV-EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 86 (190)
Q Consensus 9 ~~~G~~~v~~i~~~~~~~i~~hlm-v~-dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~ 86 (190)
++||++++++||+.+++++|+|+| +. ++..+++.+.++|||++++|+|++ .+++.++++.++++|+++|++++|.+
T Consensus 40 ~~~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g-~~~l~~~i~~~~~~g~~~~v~~~~~~- 117 (215)
T PRK13813 40 LASGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTG-RDSLKAVVEAAAESGGKVFVVVEMSH- 117 (215)
T ss_pred HhhCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCC-HHHHHHHHHHHHhcCCeEEEEEeCCC-
Confidence 469999999999988899999998 44 455567899999999999999974 55689999999999999999999976
Q ss_pred HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc--HHHHHHcCCCEEEEcc
Q 029661 87 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN--AYKVIEAGANALVAGS 164 (190)
Q Consensus 87 ~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~--~~~~~~aGad~~VvGs 164 (190)
.+.++.+.+.+|.++.|+++||++||+|.+..+++|+++|+..++ ++.+ +||||++++ ++++.++|||++|+||
T Consensus 118 ~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~---~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr 193 (215)
T PRK13813 118 PGALEFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGD---ELKI-ISPGIGAQGGKAADAIKAGADYVIVGR 193 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCC---CcEE-EeCCcCCCCCCHHHHHHcCCCEEEECc
Confidence 444555566788999999999999999999889999999888753 4567 999999975 9999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhhcc
Q 029661 165 AVFGAKDYAEAIKGIKTSKRP 185 (190)
Q Consensus 165 aI~~~~dp~~~~~~l~~~~~~ 185 (190)
+||+++||.++++.+++.++.
T Consensus 194 ~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 194 SIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred ccCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999988753
No 18
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.97 E-value=5.3e-31 Score=214.30 Aligned_cols=159 Identities=20% Similarity=0.259 Sum_probs=144.8
Q ss_pred CCccccCcCC-----------CCHHHHHHhccCCCCcEEEEEeec-Ch------HHHHHHHHHcCCCEEEEcccCCCcch
Q 029661 1 MDGRFVPNIT-----------IGPLVVDALRPVTDLPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIH 62 (190)
Q Consensus 1 mDg~fvpn~~-----------~G~~~v~~i~~~~~~~i~~hlmv~-dp------~~~i~~~~~~Gad~v~vh~e~~~~~~ 62 (190)
|||+|++|.+ ++++.++++|+.+++| +|||+. || ++|++.+.++|+|++++|.. +.++
T Consensus 42 ~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p--v~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl--~~ee 117 (242)
T cd04724 42 ADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP--IVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL--PPEE 117 (242)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC--EEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC--CHHH
Confidence 8999999977 9999999999877777 589998 98 88999999999999999766 2457
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcc-cchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661 63 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEV 140 (190)
Q Consensus 63 ~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~~~~~i~v 140 (190)
..++++.+|++|++++++++|+|+.++++++++ ..|+|++|++.|++++|. |.+...++++++|+.. +.+|.|
T Consensus 118 ~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-----~~pI~v 192 (242)
T cd04724 118 AEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-----DLPIAV 192 (242)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-----CCcEEE
Confidence 889999999999999999999999999999998 789999999999999998 8888999999999864 478999
Q ss_pred eCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 141 DGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 141 dGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
+|||| +++++++.++ ||++|+||++|+.
T Consensus 193 ggGI~~~e~~~~~~~~-ADgvVvGSaiv~~ 221 (242)
T cd04724 193 GFGISTPEQAAEVAKY-ADGVIVGSALVKI 221 (242)
T ss_pred EccCCCHHHHHHHHcc-CCEEEECHHHHHH
Confidence 99999 6799999999 9999999999863
No 19
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.97 E-value=8.4e-30 Score=202.22 Aligned_cols=167 Identities=21% Similarity=0.288 Sum_probs=148.8
Q ss_pred CCCCHHHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE-cCCC
Q 029661 9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPAT 85 (190)
Q Consensus 9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t 85 (190)
..+|++.++.||+. ++..+.+|+|+.||+.+ ++.+.++|||++++|.++ +..++.++++.++++|+++++.+ +|.|
T Consensus 36 ~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~~t 114 (206)
T TIGR03128 36 KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA-DDATIKGAVKAAKKHGKEVQVDLINVKD 114 (206)
T ss_pred HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 45789999999986 77889999999999988 899999999999999997 34467899999999999999984 8999
Q ss_pred CHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661 86 SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 86 ~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGs 164 (190)
+.+.+++..+ .+|+| +++||+++|.+.+..+++++++++.++. +.++++||||++|++++.++|||.+++||
T Consensus 115 ~~~~~~~~~~~g~d~v---~~~pg~~~~~~~~~~~~~i~~l~~~~~~----~~i~v~GGI~~~n~~~~~~~Ga~~v~vGs 187 (206)
T TIGR03128 115 KVKRAKELKELGADYI---GVHTGLDEQAKGQNPFEDLQTILKLVKE----ARVAVAGGINLDTIPDVIKLGPDIVIVGG 187 (206)
T ss_pred hHHHHHHHHHcCCCEE---EEcCCcCcccCCCCCHHHHHHHHHhcCC----CcEEEECCcCHHHHHHHHHcCCCEEEEee
Confidence 9888887776 58877 5689999999998889999999988753 57899999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhh
Q 029661 165 AVFGAKDYAEAIKGIKTSK 183 (190)
Q Consensus 165 aI~~~~dp~~~~~~l~~~~ 183 (190)
+||+++||.++++.+++.+
T Consensus 188 ai~~~~d~~~~~~~l~~~~ 206 (206)
T TIGR03128 188 AITKAADPAEAARQIRKLI 206 (206)
T ss_pred hhcCCCCHHHHHHHHHhhC
Confidence 9999999999999998753
No 20
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.97 E-value=1.6e-29 Score=205.93 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=139.3
Q ss_pred HHHHHHhccCCCCcEEEEEe------ecChHHHHHHHHHcCCCEEEEc---ccCCCcchHHHHHHHHHHhCCcEEEEEcC
Q 029661 13 PLVVDALRPVTDLPLDVHLM------IVEPEQRVPDFIKAGADIVSVH---CEQSSTIHLHRTLNQIKDLGAKAGVVLNP 83 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlm------v~dp~~~i~~~~~~Gad~v~vh---~e~~~~~~~~~~i~~i~~~g~~~g~~i~p 83 (190)
++.++++|+.+++|+ ||| +.+|.+|++.+.++|+|++++| .|+ .+++.++++.++++|++++++++|
T Consensus 63 ~~~v~~vr~~~~~Pl--~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~--~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 63 WPLLEEVRKDVSVPI--ILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDY--PDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHhccCCCCE--EEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCc--HHHHHHHHHHHHHcCCCEEEEECC
Confidence 578999998888898 677 6688999999999999999999 564 467889999999999999999999
Q ss_pred CCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC-CcccHHHHHHcCCCEEEE
Q 029661 84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVA 162 (190)
Q Consensus 84 ~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-~~e~~~~~~~aGad~~Vv 162 (190)
.||.++++++++..|.+++|+++||++ ++|.+...++++++|++.++ .+|++|||| |+++++.+.++|||++|+
T Consensus 139 ~T~~e~l~~~~~~~~~~l~msv~~~~g-~~~~~~~~~~i~~lr~~~~~----~~i~v~gGI~~~e~i~~~~~~gaD~vvv 213 (244)
T PRK13125 139 KFPDLLIHRLSKLSPLFIYYGLRPATG-VPLPVSVERNIKRVRNLVGN----KYLVVGFGLDSPEDARDALSAGADGVVV 213 (244)
T ss_pred CCCHHHHHHHHHhCCCEEEEEeCCCCC-CCchHHHHHHHHHHHHhcCC----CCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999999985 58999999999999998753 369999999 799999999999999999
Q ss_pred cccccC---CCCHHHHHHHHHH
Q 029661 163 GSAVFG---AKDYAEAIKGIKT 181 (190)
Q Consensus 163 GsaI~~---~~dp~~~~~~l~~ 181 (190)
||+||+ .++.++..+.+++
T Consensus 214 GSai~~~~~~~~~~~~~~~~~~ 235 (244)
T PRK13125 214 GTAFIEELEKNGVESALNLLKK 235 (244)
T ss_pred CHHHHHHHHhcCHHHHHHHHHH
Confidence 999996 3455544444443
No 21
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.96 E-value=4.3e-28 Score=198.56 Aligned_cols=164 Identities=16% Similarity=0.221 Sum_probs=144.4
Q ss_pred CHHHHHHhccC-CCCcEEEEEeecCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661 12 GPLVVDALRPV-TDLPLDVHLMIVEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 84 (190)
Q Consensus 12 G~~~v~~i~~~-~~~~i~~hlmv~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~ 84 (190)
..+.++++|+. +++|++ |||..|| ++|++.++++|+|++++|.+. .++..++++.+|++|++++++++|+
T Consensus 74 ~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp--~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 74 CFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLP--LEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred HHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCC--hHHHHHHHHHHHHCCCcEEEEECCC
Confidence 35678999976 789998 9999999 889999999999999999994 6789999999999999999999999
Q ss_pred CCHHHHHHhhcccc-eEEEEeeecCCCCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 85 TSLSAIECVLDVVD-LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 85 t~~~~~~~~~~~~d-~i~~m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
|+.++++++++..+ +|++||+. |++||+ |.+...++++++|+..+ .+|.|+|||+ +++++++.++|||++
T Consensus 151 T~~eri~~i~~~~~gfiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~~~-----~pi~vgfGI~~~e~~~~~~~~GADgv 224 (256)
T TIGR00262 151 ADDERLKQIAEKSQGFVYLVSRA-GVTGARNRAASALNELVKRLKAYSA-----KPVLVGFGISKPEQVKQAIDAGADGV 224 (256)
T ss_pred CCHHHHHHHHHhCCCCEEEEECC-CCCCCcccCChhHHHHHHHHHhhcC-----CCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 99999999998887 99999997 999986 88999999999998753 4799999998 999999999999999
Q ss_pred EEcccccCC-----CCHHHHHHHHHHhhc
Q 029661 161 VAGSAVFGA-----KDYAEAIKGIKTSKR 184 (190)
Q Consensus 161 VvGsaI~~~-----~dp~~~~~~l~~~~~ 184 (190)
|+||+|++. .++.+.++.+++.++
T Consensus 225 VvGSaiv~~~~~~~~~~~~~~~~i~~~~~ 253 (256)
T TIGR00262 225 IVGSAIVKIIEENLNTPEKMLQALEEFVQ 253 (256)
T ss_pred EECHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 999999962 266666666665544
No 22
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.95 E-value=2.6e-27 Score=187.11 Aligned_cols=161 Identities=24% Similarity=0.298 Sum_probs=135.2
Q ss_pred CCCCHHHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE-EcCCC
Q 029661 9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPAT 85 (190)
Q Consensus 9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~-i~p~t 85 (190)
.++|++.++.+|+. ++.++++|+|+.+|.++ ++.+.++|+|++++|.++. .+++.++++.+|++|++++++ ++|.|
T Consensus 37 ~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~-~~~~~~~i~~~~~~g~~~~v~~~~~~t 115 (202)
T cd04726 37 KSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP-LSTIKKAVKAAKKYGKEVQVDLIGVED 115 (202)
T ss_pred HHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC-HHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 46789999999986 89999999999999766 6889999999999999962 346788999999999999996 99999
Q ss_pred CHHHHHHhhcccceEEEEeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661 86 SLSAIECVLDVVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 86 ~~~~~~~~~~~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGs 164 (190)
+.+..+.+...+|++.+ .|++.++.+ .+...++++++++. .+.++.++||||++|++++.++|||++++||
T Consensus 116 ~~e~~~~~~~~~d~v~~---~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 116 PEKRAKLLKLGVDIVIL---HRGIDAQAAGGWWPEDDLKKVKKL-----LGVKVAVAGGITPDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred HHHHHHHHHCCCCEEEE---cCcccccccCCCCCHHHHHHHHhh-----cCCCEEEECCcCHHHHHHHHhcCCCEEEEee
Confidence 99887633347898876 455544444 35667788877765 2478999999999999999999999999999
Q ss_pred cccCCCCHHHHHHH
Q 029661 165 AVFGAKDYAEAIKG 178 (190)
Q Consensus 165 aI~~~~dp~~~~~~ 178 (190)
+||+++||.+++++
T Consensus 188 ai~~~~d~~~~~~~ 201 (202)
T cd04726 188 AITGAADPAEAARE 201 (202)
T ss_pred hhcCCCCHHHHHhc
Confidence 99999999988765
No 23
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.94 E-value=6.6e-26 Score=177.99 Aligned_cols=166 Identities=25% Similarity=0.312 Sum_probs=137.1
Q ss_pred CCCHHHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE-EcCCCC
Q 029661 10 TIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATS 86 (190)
Q Consensus 10 ~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~-i~p~t~ 86 (190)
++|.+.|+.||+. |+.+++||+|+.|.+.+ .++++++|||++|+.+-+ +.+++..+++.++++|+.+.+. ++..++
T Consensus 41 ~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~~~~~ 119 (217)
T COG0269 41 AEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDP 119 (217)
T ss_pred HhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC-CHHHHHHHHHHHHHcCCeEEEEeecCCCH
Confidence 6899999999985 99999999999999887 678999999999999887 5789999999999999999996 555566
Q ss_pred HHHHHHhh-cccceEEEEeeecCCCCc----ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEE
Q 029661 87 LSAIECVL-DVVDLVLIMSVNPGFGGQ----SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV 161 (190)
Q Consensus 87 ~~~~~~~~-~~~d~i~~m~v~pG~~gq----~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~V 161 (190)
.++.+.+- -.+|++.+ |-|.+-| .+....+++++++.++ .+.++|.|||++++++.+...|+++||
T Consensus 120 ~~~~~~l~~~gvd~~~~---H~g~D~q~~G~~~~~~~l~~ik~~~~~------g~~vAVaGGI~~~~i~~~~~~~~~ivI 190 (217)
T COG0269 120 EQRAKWLKELGVDQVIL---HRGRDAQAAGKSWGEDDLEKIKKLSDL------GAKVAVAGGITPEDIPLFKGIGADIVI 190 (217)
T ss_pred HHHHHHHHHhCCCEEEE---EecccHhhcCCCccHHHHHHHHHhhcc------CceEEEecCCCHHHHHHHhcCCCCEEE
Confidence 66655544 34898875 5565544 3333444455444432 268999999999999999999999999
Q ss_pred EcccccCCCCHHHHHHHHHHhhcc
Q 029661 162 AGSAVFGAKDYAEAIKGIKTSKRP 185 (190)
Q Consensus 162 vGsaI~~~~dp~~~~~~l~~~~~~ 185 (190)
+||+|+++.||.++++++++.+++
T Consensus 191 vGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 191 VGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred ECchhcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998864
No 24
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.92 E-value=2.1e-24 Score=177.03 Aligned_cols=163 Identities=13% Similarity=0.165 Sum_probs=133.0
Q ss_pred CHHHHHHhccCCCCcEEEEEee-cCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661 12 GPLVVDALRPVTDLPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 84 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv-~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~ 84 (190)
..+.++++|+.+++|+. ||+ .|| ++|++.++++|+|++++|.+ +.++..++++.++++|+..++.++|+
T Consensus 79 ~~~~~~~~r~~~~~p~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL--P~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 79 ILSILSEVNGEIKAPIV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDL--PYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred HHHHHHHHhcCCCCCEE--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46788889877788876 699 487 56899999999999999999 47789999999999999999999999
Q ss_pred CCHHHHHHhhcccc-eEEEEeeecCCCCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 85 TSLSAIECVLDVVD-LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 85 t~~~~~~~~~~~~d-~i~~m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
||.++++++.+.++ +|++|+ .+|++|++ +.+...+.++++|+. .+.+|+|+|||+ +++++++.++|||++
T Consensus 155 T~~eri~~i~~~a~gFIY~vS-~~GvTG~~~~~~~~~~~~i~~ir~~-----t~~Pi~vGFGI~~~e~~~~~~~~GADGv 228 (263)
T CHL00200 155 SSKSRIQKIARAAPGCIYLVS-TTGVTGLKTELDKKLKKLIETIKKM-----TNKPIILGFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred CCHHHHHHHHHhCCCcEEEEc-CCCCCCCCccccHHHHHHHHHHHHh-----cCCCEEEECCcCCHHHHHHHHhcCCCEE
Confidence 99999999999887 999999 68999985 334445555555554 357899999999 899999999999999
Q ss_pred EEcccc---cCCCCHHHHHHHHHHhhc
Q 029661 161 VAGSAV---FGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 161 VvGsaI---~~~~dp~~~~~~l~~~~~ 184 (190)
|+||++ +...++.+.++.+++.++
T Consensus 229 VVGSalv~~i~~~~~~~~~~~~~~~~~ 255 (263)
T CHL00200 229 VIGSACVQILLGSSPEKGLDQLSEFCK 255 (263)
T ss_pred EECHHHHHHHHhcChhhHHHHHHHHHH
Confidence 999998 544444444445544433
No 25
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.88 E-value=6.8e-22 Score=172.90 Aligned_cols=168 Identities=22% Similarity=0.311 Sum_probs=140.6
Q ss_pred CcC-CCCHHHHHHhccC-CC--CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE-EE
Q 029661 7 PNI-TIGPLVVDALRPV-TD--LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VL 81 (190)
Q Consensus 7 pn~-~~G~~~v~~i~~~-~~--~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~-~i 81 (190)
|+. .+|.+.+++|++. .+ +..|+|+|.. |..+++.+.++|||++++|.+. +..++.++++.++++|+++++ ++
T Consensus 38 p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g~~~v~~a~~aGAdgV~v~g~~-~~~~~~~~i~~a~~~G~~~~~g~~ 115 (430)
T PRK07028 38 PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-GAIEVEMAAKAGADIVCILGLA-DDSTIEDAVRAARKYGVRLMADLI 115 (430)
T ss_pred HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-hHHHHHHHHHcCCCEEEEecCC-ChHHHHHHHHHHHHcCCEEEEEec
Confidence 444 7789999999875 32 4557788877 8889999999999999999875 233567899999999999998 58
Q ss_pred cCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEE
Q 029661 82 NPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 82 ~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~ 160 (190)
++.|+.+.++++.+. +|||. +.||+++|.+.+..++.++++++.. +++|.++|||+.+|+.++.++|||++
T Consensus 116 s~~t~~e~~~~a~~~GaD~I~---~~pg~~~~~~~~~~~~~l~~l~~~~-----~iPI~a~GGI~~~n~~~~l~aGAdgv 187 (430)
T PRK07028 116 NVPDPVKRAVELEELGVDYIN---VHVGIDQQMLGKDPLELLKEVSEEV-----SIPIAVAGGLDAETAAKAVAAGADIV 187 (430)
T ss_pred CCCCHHHHHHHHHhcCCCEEE---EEeccchhhcCCChHHHHHHHHhhC-----CCcEEEECCCCHHHHHHHHHcCCCEE
Confidence 888988887777764 89984 4689988888777777787777542 37899999999999999999999999
Q ss_pred EEcccccCCCCHHHHHHHHHHhhc
Q 029661 161 VAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
++||+||+++||.+.++.+++.++
T Consensus 188 ~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 188 IVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred EEChHHcCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 26
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.87 E-value=3.6e-22 Score=161.30 Aligned_cols=173 Identities=20% Similarity=0.256 Sum_probs=127.6
Q ss_pred CCccccCcCCCCHHHHHHhccC-CCCcEEEEE--eecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh--CC
Q 029661 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHL--MIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GA 75 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~-~~~~i~~hl--mv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~--g~ 75 (190)
||++|+ +||++.+++|++. +.+++|+|| |.++|..+++.+.++|+|++|+|++++ .++++++.+.++++ +.
T Consensus 34 g~~~f~---~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~ag-~~~i~~~~~~~~~~~~~~ 109 (230)
T PRK00230 34 GMELFT---AGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHASGG-PRMMKAAREALEPKSRPL 109 (230)
T ss_pred cHHHHH---hcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcccCC-HHHHHHHHHHhhccCCCe
Confidence 688997 8999999999987 678999999 999999999999999999999999984 67788888887764 45
Q ss_pred cEEEEEcCCCCHHHHHHh-hcc--cceEEEE---eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc--
Q 029661 76 KAGVVLNPATSLSAIECV-LDV--VDLVLIM---SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-- 147 (190)
Q Consensus 76 ~~g~~i~p~t~~~~~~~~-~~~--~d~i~~m---~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e-- 147 (190)
.+++.+-.+.+.+.+++. ... -+++..+ ..+.|.+|-...+. .++.+|+..++ ++ +.|.|||+++
T Consensus 110 ~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~---~~~~ir~~~~~---~~-~~v~pGI~~~g~ 182 (230)
T PRK00230 110 LIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ---EAAAIREATGP---DF-LLVTPGIRPAGS 182 (230)
T ss_pred EEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH---HHHHHHhhcCC---ce-EEEcCCcCCCCC
Confidence 666654433333444321 111 1222211 22345444333332 24555665543 23 5789999987
Q ss_pred ---------cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 148 ---------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 148 ---------~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
++.+++++|||++|+||+||+++||.++++++++.+.
T Consensus 183 ~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 183 DAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred CcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999998764
No 27
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.84 E-value=3.1e-20 Score=147.51 Aligned_cols=149 Identities=23% Similarity=0.234 Sum_probs=119.4
Q ss_pred cEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEee
Q 029661 26 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSV 105 (190)
Q Consensus 26 ~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v 105 (190)
..++|+|+.+ +++.+.++|+|++++|.+. . ....++.+++.+..+|+.++ |+.+..+.+...+|+|.++.+
T Consensus 63 ~~~~~l~~~~---~~~~a~~~gad~vh~~~~~--~--~~~~~~~~~~~~~~~g~~~~--t~~e~~~a~~~gaD~v~~~~~ 133 (212)
T PRK00043 63 RYGVPLIVND---RVDLALAVGADGVHLGQDD--L--PVADARALLGPDAIIGLSTH--TLEEAAAALAAGADYVGVGPI 133 (212)
T ss_pred HhCCeEEEeC---hHHHHHHcCCCEEecCccc--C--CHHHHHHHcCCCCEEEEeCC--CHHHHHHHhHcCCCEEEECCc
Confidence 4678888876 7889999999999998763 2 23455666778888998875 555555555567999999888
Q ss_pred ecCCCCcccchh-hHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 106 NPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 106 ~pG~~gq~~~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
.|+...+...+. .+++++++++..+ +++|.++||||++|+.++.++|||++++||+||+++||.+.++++++.++
T Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~ 209 (212)
T PRK00043 134 FPTPTKKDAKAPQGLEGLREIRAAVG----DIPIVAIGGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFR 209 (212)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHh
Confidence 888766554433 3888888888763 27899999999999999999999999999999999999999999998877
Q ss_pred ccc
Q 029661 185 PQA 187 (190)
Q Consensus 185 ~~~ 187 (190)
.++
T Consensus 210 ~~~ 212 (212)
T PRK00043 210 AAR 212 (212)
T ss_pred hcC
Confidence 653
No 28
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.81 E-value=1.3e-19 Score=141.45 Aligned_cols=161 Identities=22% Similarity=0.189 Sum_probs=124.9
Q ss_pred CCccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 1 mDg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
+|++|.+++. .++++++.+. ++++|+|+.+ +++.+.++|+|++++.... .....++.+++.+..+|+.
T Consensus 34 ~~~~~~~~~~----~~~~i~~~~~-~~~~~l~~~~---~~~~a~~~g~~~vh~~~~~----~~~~~~~~~~~~~~~~g~~ 101 (196)
T cd00564 34 KDLSARELLE----LARALRELCR-KYGVPLIIND---RVDLALAVGADGVHLGQDD----LPVAEARALLGPDLIIGVS 101 (196)
T ss_pred CCCCHHHHHH----HHHHHHHHHH-HhCCeEEEeC---hHHHHHHcCCCEEecCccc----CCHHHHHHHcCCCCEEEee
Confidence 4666666653 4666766543 6788999987 6778899999977655431 2334566677778899988
Q ss_pred EcCCCCHHHHHHhhc-ccceEEEEeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC
Q 029661 81 LNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN 158 (190)
Q Consensus 81 i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad 158 (190)
++ |+ +.+.+... .+|+|.++.+.|+..++.+ .+..+++++++++.. ++++.++|||+++|+.++.++|+|
T Consensus 102 ~~--t~-~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~pv~a~GGi~~~~i~~~~~~Ga~ 173 (196)
T cd00564 102 TH--SL-EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV-----EIPVVAIGGITPENAAEVLAAGAD 173 (196)
T ss_pred CC--CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHcCCC
Confidence 74 44 44455444 5999999999999887776 677788888887762 478999999999999999999999
Q ss_pred EEEEcccccCCCCHHHHHHHHHH
Q 029661 159 ALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 159 ~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
++++||+||+++||.++++++++
T Consensus 174 ~i~~g~~i~~~~~~~~~~~~l~~ 196 (196)
T cd00564 174 GVAVISAITGADDPAAAARELLA 196 (196)
T ss_pred EEEEehHhhcCCCHHHHHHHHhC
Confidence 99999999999999999988863
No 29
>PLN02591 tryptophan synthase
Probab=99.80 E-value=2e-18 Score=140.67 Aligned_cols=163 Identities=18% Similarity=0.272 Sum_probs=129.3
Q ss_pred CHHHHHHhccCCCCcEEEEEeec-Ch------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 84 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~-dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~ 84 (190)
..+.++++|+.+++|+. ||++ || ++|++.++++|+|+++++.. +.++..++.+.++++|+.....+.|+
T Consensus 66 ~~~~~~~~r~~~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL--P~ee~~~~~~~~~~~gl~~I~lv~Pt 141 (250)
T PLN02591 66 VISMLKEVAPQLSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDL--PLEETEALRAEAAKNGIELVLLTTPT 141 (250)
T ss_pred HHHHHHHHhcCCCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 36788888876778886 6984 77 56899999999999999976 46778899999999999999999999
Q ss_pred CCHHHHHHhhccc-ceEEEEeeecCCCCc--ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 85 TSLSAIECVLDVV-DLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 85 t~~~~~~~~~~~~-d~i~~m~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
|+.++++.+.... ++|.+.++. |.+|. .+.+...+.++++|+.. +.++.+++||+ +++++++.+.|||++
T Consensus 142 t~~~ri~~ia~~~~gFIY~Vs~~-GvTG~~~~~~~~~~~~i~~vk~~~-----~~Pv~vGFGI~~~e~v~~~~~~GADGv 215 (250)
T PLN02591 142 TPTERMKAIAEASEGFVYLVSST-GVTGARASVSGRVESLLQELKEVT-----DKPVAVGFGISKPEHAKQIAGWGADGV 215 (250)
T ss_pred CCHHHHHHHHHhCCCcEEEeeCC-CCcCCCcCCchhHHHHHHHHHhcC-----CCceEEeCCCCCHHHHHHHHhcCCCEE
Confidence 9999999988764 677776764 55554 33455555588888753 47899999999 899999999999999
Q ss_pred EEcccccCC----CCHHHHHHHHHHhhc
Q 029661 161 VAGSAVFGA----KDYAEAIKGIKTSKR 184 (190)
Q Consensus 161 VvGsaI~~~----~dp~~~~~~l~~~~~ 184 (190)
|+||++.+. +++.+..+.+.+.++
T Consensus 216 IVGSalVk~i~~~~~~~~~~~~~~~~~~ 243 (250)
T PLN02591 216 IVGSAMVKALGEAKSPEEGLKRLEKLAK 243 (250)
T ss_pred EECHHHHHhhhhccChhHHHHHHHHHHH
Confidence 999999752 356555555555444
No 30
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=99.75 E-value=2.3e-17 Score=134.91 Aligned_cols=164 Identities=21% Similarity=0.272 Sum_probs=127.5
Q ss_pred HHHHHHhc-cCCCCcEEEEEeec-Ch------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661 13 PLVVDALR-PVTDLPLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 84 (190)
Q Consensus 13 ~~~v~~i~-~~~~~~i~~hlmv~-dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~ 84 (190)
.+.++++| +.+++|+.+ |++ || ++|++.+.++|+|+++++.. +.++..++.+.++++|+.....+.|+
T Consensus 75 ~~~~~~ir~~~~~~pivl--m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDL--P~ee~~~~~~~~~~~gl~~I~lv~p~ 150 (259)
T PF00290_consen 75 FELVKEIRKKEPDIPIVL--MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDL--PPEESEELREAAKKHGLDLIPLVAPT 150 (259)
T ss_dssp HHHHHHHHHHCTSSEEEE--EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTS--BGGGHHHHHHHHHHTT-EEEEEEETT
T ss_pred HHHHHHHhccCCCCCEEE--EeeccHHhccchHHHHHHHHHcCCCEEEEcCC--ChHHHHHHHHHHHHcCCeEEEEECCC
Confidence 56789999 678899988 884 65 46888999999999999876 46778889999999999999999999
Q ss_pred CCHHHHHHhhcc-cceEEEEeeecCCCCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
||.++++++.+. -.+|+++++. |.+|.. +.....+.++++|+.. +.++.+++||+ +++++.+. .|||++
T Consensus 151 t~~~Ri~~i~~~a~gFiY~vs~~-GvTG~~~~~~~~l~~~i~~ik~~~-----~~Pv~vGFGI~~~e~~~~~~-~~aDGv 223 (259)
T PF00290_consen 151 TPEERIKKIAKQASGFIYLVSRM-GVTGSRTELPDELKEFIKRIKKHT-----DLPVAVGFGISTPEQAKKLA-AGADGV 223 (259)
T ss_dssp S-HHHHHHHHHH-SSEEEEESSS-SSSSTTSSCHHHHHHHHHHHHHTT-----SS-EEEESSS-SHHHHHHHH-TTSSEE
T ss_pred CCHHHHHHHHHhCCcEEEeeccC-CCCCCcccchHHHHHHHHHHHhhc-----CcceEEecCCCCHHHHHHHH-ccCCEE
Confidence 999999998876 4677776765 554432 4455677788888775 46899999999 69999987 999999
Q ss_pred EEcccccC-----CCCHHHHHHHHHHhhcccc
Q 029661 161 VAGSAVFG-----AKDYAEAIKGIKTSKRPQA 187 (190)
Q Consensus 161 VvGsaI~~-----~~dp~~~~~~l~~~~~~~~ 187 (190)
|+||++.+ .++..+.++++++..+.++
T Consensus 224 IVGSa~v~~i~~~~~~~~~~~~~~~~~~~~lk 255 (259)
T PF00290_consen 224 IVGSAFVKIIEENGDDAEKFLKELKEFVRELK 255 (259)
T ss_dssp EESHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 99999875 2566777777777655443
No 31
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.75 E-value=6.5e-17 Score=131.62 Aligned_cols=161 Identities=19% Similarity=0.278 Sum_probs=126.8
Q ss_pred HHHHHHhccC-CCCcEEEEEee-cCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC
Q 029661 13 PLVVDALRPV-TDLPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 84 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~hlmv-~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~ 84 (190)
.+.++.+|+. +++|+.+ |+ .|| ++|++.+.++|+|++++.-- +.++..++.+.++++|+.....+.|+
T Consensus 82 lel~~~~r~~~~~~Pivl--m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL--P~ee~~~~~~~~~~~gi~~I~lvaPt 157 (265)
T COG0159 82 LELVEEIRAKGVKVPIVL--MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL--PPEESDELLKAAEKHGIDPIFLVAPT 157 (265)
T ss_pred HHHHHHHHhcCCCCCEEE--EEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC--ChHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 5678888854 7889888 87 587 56889999999999999866 46677889999999999999999999
Q ss_pred CCHHHHHHhhccc-ceEEEEeeecCCCCcccc--hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 85 TSLSAIECVLDVV-DLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 85 t~~~~~~~~~~~~-d~i~~m~v~pG~~gq~~~--~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
|+.++++++.+.. .+|++.++. |.+|..-. ....+.++++|++. +.++.|.+||+ +++++++.++ ||++
T Consensus 158 t~~~rl~~i~~~a~GFiY~vs~~-GvTG~~~~~~~~~~~~v~~vr~~~-----~~Pv~vGFGIs~~e~~~~v~~~-ADGV 230 (265)
T COG0159 158 TPDERLKKIAEAASGFIYYVSRM-GVTGARNPVSADVKELVKRVRKYT-----DVPVLVGFGISSPEQAAQVAEA-ADGV 230 (265)
T ss_pred CCHHHHHHHHHhCCCcEEEEecc-cccCCCcccchhHHHHHHHHHHhc-----CCCeEEecCcCCHHHHHHHHHh-CCeE
Confidence 9999999998875 677777776 44443322 23577788888875 36899999999 8999999999 9999
Q ss_pred EEcccccCC--CCH-HHHHHHHHHhhc
Q 029661 161 VAGSAVFGA--KDY-AEAIKGIKTSKR 184 (190)
Q Consensus 161 VvGsaI~~~--~dp-~~~~~~l~~~~~ 184 (190)
||||+|.+. ++. ++.++++++.++
T Consensus 231 IVGSAiV~~i~~~~~~~~~~~~~~l~~ 257 (265)
T COG0159 231 IVGSAIVKIIEEGLDEEALEELRALVK 257 (265)
T ss_pred EEcHHHHHHHHhccchhhHHHHHHHHH
Confidence 999999863 221 344455554443
No 32
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.72 E-value=1.8e-17 Score=132.64 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=116.9
Q ss_pred CCCCHHHHHHhccC-CCCcEEEEEeecChHH-HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE---EEEEcC
Q 029661 9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA---GVVLNP 83 (190)
Q Consensus 9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~-~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~---g~~i~p 83 (190)
+++|++.|++|++. +++++.+|||+.|..+ ..+.+.++|+|.+++|.-+ ..+++.++.+.++++|.++ -+.+..
T Consensus 40 ~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~-g~~~i~~a~~~a~~~~~~~~~~llgV~t 118 (218)
T PRK13305 40 LNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAA-PLATVEKGHAVAQRCGGEIQIELFGNWT 118 (218)
T ss_pred HHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCC-CHHHHHHHHHHHHhcCCcccceEEEecC
Confidence 35799999999985 7899999999999654 4567889999999999775 4677888888777656542 222321
Q ss_pred CCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc
Q 029661 84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 163 (190)
Q Consensus 84 ~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG 163 (190)
....+.++++ ...++++..+......|..+.+.- +..+|+..+ .++++.|.|||++++.....+.++|++|+|
T Consensus 119 ~~~~~~l~~~-g~~~~v~h~a~~a~~~G~v~s~~e---~~~ir~~~~---~~~~i~VtpGIr~~~~~~~dq~rvd~iVVG 191 (218)
T PRK13305 119 LDDARDWHRI-GVRQAIYHRGRDAQASGQQWGEAD---LARMKALSD---IGLELSITGGITPADLPLFKDIRVKAFIAG 191 (218)
T ss_pred cchHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHH---HHHHHHHhC---CCCcEEEeCCcCccccccccccCCCEEEEC
Confidence 1222233322 112333332322212233333333 344455443 246789999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHhhcc
Q 029661 164 SAVFGAKDYAEAIKGIKTSKRP 185 (190)
Q Consensus 164 saI~~~~dp~~~~~~l~~~~~~ 185 (190)
|+|++++||.++++++++.++.
T Consensus 192 R~It~A~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 192 RALAGAANPAQVAADFHAQIDA 213 (218)
T ss_pred CcccCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 33
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.71 E-value=5e-16 Score=127.32 Aligned_cols=147 Identities=19% Similarity=0.232 Sum_probs=118.1
Q ss_pred CHHHHHHhc-cCCCCcEEEEEee-cCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC
Q 029661 12 GPLVVDALR-PVTDLPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 83 (190)
Q Consensus 12 G~~~v~~i~-~~~~~~i~~hlmv-~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p 83 (190)
..+.++++| +.+++|+. +|+ .|| ++|++.++++|+|+++++.. +.++..++.+.++++|+.....+.|
T Consensus 76 ~~~~~~~~r~~~~~~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL--p~ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 76 VFELVREIREKDPTIPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL--PPEEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred HHHHHHHHHhcCCCCCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEECCC--CHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 467888898 45788987 588 476 46899999999999999865 4678889999999999999999999
Q ss_pred CCCHHHHHHhhcc-cceEEEEeeecCCCCc--ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCE
Q 029661 84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANA 159 (190)
Q Consensus 84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~ 159 (190)
+|+.++++.+... .++|.+.++. |.+|. .+.+...+.++++|+.. +.++.+.|||+ +++++++.+. ||+
T Consensus 152 ~t~~eri~~i~~~s~gfIY~vs~~-GvTG~~~~~~~~~~~~i~~vk~~~-----~~pv~vGfGI~~~e~v~~~~~~-ADG 224 (258)
T PRK13111 152 TTTDERLKKIASHASGFVYYVSRA-GVTGARSADAADLAELVARLKAHT-----DLPVAVGFGISTPEQAAAIAAV-ADG 224 (258)
T ss_pred CCCHHHHHHHHHhCCCcEEEEeCC-CCCCcccCCCccHHHHHHHHHhcC-----CCcEEEEcccCCHHHHHHHHHh-CCE
Confidence 9999999988765 4677666664 43333 34455666788888754 36899999995 7999999875 999
Q ss_pred EEEcccccCC
Q 029661 160 LVAGSAVFGA 169 (190)
Q Consensus 160 ~VvGsaI~~~ 169 (190)
+|+||++.+.
T Consensus 225 viVGSaiv~~ 234 (258)
T PRK13111 225 VIVGSALVKI 234 (258)
T ss_pred EEEcHHHHHH
Confidence 9999998754
No 34
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=99.66 E-value=2.9e-16 Score=125.53 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=106.3
Q ss_pred CCCHHHHHHhccCCCCcEEEEEeecChH----HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661 10 TIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 85 (190)
Q Consensus 10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~----~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t 85 (190)
+||++.+++|++.. .++.+|+|..|.. .+++.++++|||++|+|++++ .+++.++++.++++|.++.+....+.
T Consensus 36 ~~G~~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g-~~~l~~~~~~~~~~~~~v~~v~~lss 113 (213)
T TIGR01740 36 DGGDKIIDELAKLN-KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG-SESVEAAKEAASEGGRGLLAVTELTS 113 (213)
T ss_pred hcCHHHHHHHHHcC-CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC-HHHHHHHHHHhhcCCCeEEEEEcCCC
Confidence 68999999999864 4677888887753 467778999999999999984 66789999999988865544332222
Q ss_pred CHH-HHHHhhcccceEEEEee---ecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc-----------cHH
Q 029661 86 SLS-AIECVLDVVDLVLIMSV---NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAY 150 (190)
Q Consensus 86 ~~~-~~~~~~~~~d~i~~m~v---~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e-----------~~~ 150 (190)
+-+ .+.... .+.++-++. ..|..|-...|. .++++|+..+ + .+.+.+||+++ |++
T Consensus 114 ~~~~~~~~~~--~~~v~~~a~~~~~~g~~g~v~~~~---~~~~ir~~~~----~-~~~vtPGI~~~g~~~~dq~~~~~~~ 183 (213)
T TIGR01740 114 MGSLDYGEDT--MEKVLEYAKEAKAFGLDGPVCSAE---EAKEIRKFTG----D-FLILTPGIRLQSKGADDQQRVVTLE 183 (213)
T ss_pred CChhhhCcCH--HHHHHHHHHHhhhcCCeEEEeCHH---HHHHHHHhcC----C-ceEEeCCcCCCCCCcCCccccCCHH
Confidence 211 111100 011111111 123333222233 3455555543 2 35699999976 348
Q ss_pred HHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 029661 151 KVIEAGANALVAGSAVFGAKDYAEAIKGIK 180 (190)
Q Consensus 151 ~~~~aGad~~VvGsaI~~~~dp~~~~~~l~ 180 (190)
.+.++|||++|+||+||+++||.+++++++
T Consensus 184 ~~~~~Gad~iVvGr~I~~~~d~~~~~~~~~ 213 (213)
T TIGR01740 184 DAKEAGADVIIVGRGIYAAEDPVEAAKRIR 213 (213)
T ss_pred HHHHcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence 899999999999999999999999988764
No 35
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.61 E-value=7.1e-15 Score=116.87 Aligned_cols=145 Identities=22% Similarity=0.240 Sum_probs=116.8
Q ss_pred cEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcc-cceEEEEe
Q 029661 26 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMS 104 (190)
Q Consensus 26 ~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~ 104 (190)
...+-|+++| .++.+.+.|||+||+..+. .+.....++...++.+|++++ +.+.+.+.... +|||.+-.
T Consensus 63 ~~~v~liINd---~~dlA~~~~AdGVHlGq~D----~~~~~ar~~~~~~~iIG~S~h---~~eea~~A~~~g~DYv~~Gp 132 (211)
T COG0352 63 KYGVPLIIND---RVDLALAVGADGVHLGQDD----MPLAEARELLGPGLIIGLSTH---DLEEALEAEELGADYVGLGP 132 (211)
T ss_pred HhCCeEEecC---cHHHHHhCCCCEEEcCCcc----cchHHHHHhcCCCCEEEeecC---CHHHHHHHHhcCCCEEEECC
Confidence 3456678888 7788889999999999883 233455566667788898887 56556665544 99999999
Q ss_pred eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 105 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 105 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
+.|..+-+.-.+..++.++++++.. +.++.+.||||++|+.++.++|||++.+-|+||.++||.++++++++.++
T Consensus 133 ifpT~tK~~~~~~G~~~l~~~~~~~-----~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~ 207 (211)
T COG0352 133 IFPTSTKPDAPPLGLEGLREIRELV-----NIPVVAIGGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALE 207 (211)
T ss_pred cCCCCCCCCCCccCHHHHHHHHHhC-----CCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHH
Confidence 9987664444677788888877764 26899999999999999999999999999999999999999999998775
Q ss_pred c
Q 029661 185 P 185 (190)
Q Consensus 185 ~ 185 (190)
.
T Consensus 208 ~ 208 (211)
T COG0352 208 D 208 (211)
T ss_pred h
Confidence 3
No 36
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.59 E-value=5e-14 Score=112.66 Aligned_cols=156 Identities=21% Similarity=0.300 Sum_probs=116.8
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 91 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~ 91 (190)
+++.++.+|+..++|+.+.-.+.++ ..++.+.++|||+|++.....+.+++.++++.++..|+.+.+.++ ..+.++
T Consensus 60 ~~~~~~~i~~~v~iPi~~~~~i~~~-~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~ 135 (217)
T cd00331 60 SLEDLRAVREAVSLPVLRKDFIIDP-YQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH---DEEELE 135 (217)
T ss_pred CHHHHHHHHHhcCCCEEECCeecCH-HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC---CHHHHH
Confidence 5678888888778999875555666 478899999999999876542234677888888889999877775 444455
Q ss_pred Hhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 92 CVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 92 ~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
+..+ .+|++.+ + +.+++.+.+. ++.++++++.++ .+.++.+.|||+ ++++.++.++|||++++||+|++.
T Consensus 136 ~~~~~g~~~i~~---t-~~~~~~~~~~-~~~~~~l~~~~~---~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 136 RALALGAKIIGI---N-NRDLKTFEVD-LNTTERLAPLIP---KDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred HHHHcCCCEEEE---e-CCCccccCcC-HHHHHHHHHhCC---CCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 5443 3788864 3 4455555444 366777766542 135788899997 699999999999999999999999
Q ss_pred CCHHHHHHHH
Q 029661 170 KDYAEAIKGI 179 (190)
Q Consensus 170 ~dp~~~~~~l 179 (190)
+||.+++++|
T Consensus 208 ~~p~~~~~~~ 217 (217)
T cd00331 208 PDPGAALREL 217 (217)
T ss_pred CCHHHHHHhC
Confidence 9999888754
No 37
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.57 E-value=1.4e-13 Score=113.26 Aligned_cols=160 Identities=19% Similarity=0.222 Sum_probs=118.3
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 91 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~ 91 (190)
+.+.++.+|+..++|+...=.+.+|. -++.+.++|||+|++.+...+.+++.++++.+++.|+.+.+.++.....++..
T Consensus 99 ~~~~l~~v~~~v~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~ 177 (260)
T PRK00278 99 SLEYLRAARAAVSLPVLRKDFIIDPY-QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERAL 177 (260)
T ss_pred CHHHHHHHHHhcCCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 57888999988889998766677777 58889999999999998753245799999999999999988887433333322
Q ss_pred HhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCC
Q 029661 92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171 (190)
Q Consensus 92 ~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~d 171 (190)
+ ..+|+|.+ + +.+-+.|.+. ++...++.+.+++ ..+.|+..|+.++++++.+.++|+|++++||+|++++|
T Consensus 178 ~--~gadiIgi---n-~rdl~~~~~d-~~~~~~l~~~~p~--~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~d 248 (260)
T PRK00278 178 K--LGAPLIGI---N-NRNLKTFEVD-LETTERLAPLIPS--DRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADD 248 (260)
T ss_pred H--cCCCEEEE---C-CCCcccccCC-HHHHHHHHHhCCC--CCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 2 25788754 4 2233344333 5566666665532 11345555555799999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 029661 172 YAEAIKGIKT 181 (190)
Q Consensus 172 p~~~~~~l~~ 181 (190)
|.+++++|..
T Consensus 249 p~~~~~~l~~ 258 (260)
T PRK00278 249 PGAALRELLG 258 (260)
T ss_pred HHHHHHHHhc
Confidence 9999988754
No 38
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=99.50 E-value=2.4e-13 Score=110.13 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=112.5
Q ss_pred CCCCHHHHHHhccCCCCcEEEEEeecChH----HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCc-EEEEEcC
Q 029661 9 ITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK-AGVVLNP 83 (190)
Q Consensus 9 ~~~G~~~v~~i~~~~~~~i~~hlmv~dp~----~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~-~g~~i~p 83 (190)
+.+|+.++++|++... ++.+|||..|.. .+++.+.+.|+|++|+|+..+ .+.+.++.+.++++|.+ .++..++
T Consensus 48 ~~~g~~~~~el~~~~~-~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~G-~~~~~~~~e~~~~~~~~vl~vT~lt 125 (240)
T COG0284 48 AFFGADILEELKARGK-KVFLDLKLADIPNTVALAAKAAADLGADAVTVHAFGG-FDMLRAAKEALEAGGPFVLAVTSLT 125 (240)
T ss_pred HhccHHHHHHHHHhCC-ceEEeeecccchHHHHHHHHHhhhcCCcEEEEeCcCC-HHHHHHHHHHHhhcCceEEEEEeCC
Confidence 3579999999998643 889999999963 456778889999999999874 56788888888888852 2334443
Q ss_pred CCCHHHHHH--hh-cccceEEEEe---eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc------c----
Q 029661 84 ATSLSAIEC--VL-DVVDLVLIMS---VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP------K---- 147 (190)
Q Consensus 84 ~t~~~~~~~--~~-~~~d~i~~m~---v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~------e---- 147 (190)
++.-..+.. +. +..++|+-++ -..|..|-.-.++- .+++|+..+ .++.| +..||++ +
T Consensus 126 s~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e---~~~ir~~~g---~~~~i-ltPGIg~~~~~gdQ~~~~ 198 (240)
T COG0284 126 SMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEE---VAAIREILG---PDFLI-LTPGIGAGSQGGDQGRVM 198 (240)
T ss_pred CchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCHHH---HHHHHHhcC---CCcEE-ECCCcCcCcCCCCccccc
Confidence 333221111 00 1112232222 23354443333333 344444442 34544 8999998 3
Q ss_pred cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 148 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 148 ~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
|..+.+.+|+|.+|+||+|+.++||.++++++.+.+.
T Consensus 199 t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~ 235 (240)
T COG0284 199 TPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIA 235 (240)
T ss_pred CHHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHH
Confidence 5788899999999999999999999999998877654
No 39
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.49 E-value=1.4e-12 Score=101.54 Aligned_cols=145 Identities=21% Similarity=0.264 Sum_probs=105.9
Q ss_pred HHHHHhccC-CCCcEEEEEee-cCh------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661 14 LVVDALRPV-TDLPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 85 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv-~dp------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t 85 (190)
+.+++.|.- ..+|+. ||. .|| ++|+..++++||++.++... +.++...+-+++|++|+.....+.|+|
T Consensus 84 emvk~ar~~gvt~PIi--LmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--PpEEa~~~Rne~~k~gislvpLvaPsT 159 (268)
T KOG4175|consen 84 EMVKEARPQGVTCPII--LMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--PPEEAETLRNEARKHGISLVPLVAPST 159 (268)
T ss_pred HHHHHhcccCccccee--eeecccHHHhhhHHHHHHHHHhcCCCceEeccC--ChHHHHHHHHHHHhcCceEEEeeCCCC
Confidence 445555543 234554 488 588 56899999999999999766 466778889999999999999999999
Q ss_pred CHHHHHHhhcccce-EEEEeeecCCCCc-ccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661 86 SLSAIECVLDVVDL-VLIMSVNPGFGGQ-SFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 161 (190)
Q Consensus 86 ~~~~~~~~~~~~d~-i~~m~v~pG~~gq-~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V 161 (190)
+.++++-+.+.+|- |++.+.. |..|. .-. ...-+.+.++|+..+ +.+++|.+|++ +|+.+++-.. ||++|
T Consensus 160 tdeRmell~~~adsFiYvVSrm-G~TG~~~svn~~l~~L~qrvrk~t~----dtPlAVGFGvst~EHf~qVgsv-aDGVv 233 (268)
T KOG4175|consen 160 TDERMELLVEAADSFIYVVSRM-GVTGTRESVNEKLQSLLQRVRKATG----DTPLAVGFGVSTPEHFKQVGSV-ADGVV 233 (268)
T ss_pred hHHHHHHHHHhhcceEEEEEec-cccccHHHHHHHHHHHHHHHHHhcC----CCceeEeeccCCHHHHHhhhhh-ccceE
Confidence 99998887776664 4444443 55442 211 222333455555543 46899999999 7999998777 99999
Q ss_pred EcccccC
Q 029661 162 AGSAVFG 168 (190)
Q Consensus 162 vGsaI~~ 168 (190)
+||.|..
T Consensus 234 vGSkiv~ 240 (268)
T KOG4175|consen 234 VGSKIVK 240 (268)
T ss_pred ecHHHHH
Confidence 9999873
No 40
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.49 E-value=1.5e-12 Score=100.62 Aligned_cols=156 Identities=24% Similarity=0.255 Sum_probs=111.0
Q ss_pred cccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHH----HHHHcCCCEEEEcccCCC-cchHHHHHHHHHHh--CCc
Q 029661 4 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP----DFIKAGADIVSVHCEQSS-TIHLHRTLNQIKDL--GAK 76 (190)
Q Consensus 4 ~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~----~~~~~Gad~v~vh~e~~~-~~~~~~~i~~i~~~--g~~ 76 (190)
++..+...+++.++.+++..+.|+.++++..++..+.. .+.++|+|+|.+|.+... .+...+.++.+++. ++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 116 (200)
T cd04722 37 DPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVK 116 (200)
T ss_pred CcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCce
Confidence 44444445545577777777899999999999877664 789999999999988510 01256788888887 899
Q ss_pred EEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHc
Q 029661 77 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEA 155 (190)
Q Consensus 77 ~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~a 155 (190)
+++.+++.++.+...-....+|++.+....++..++...+.....+++++. ..+.++.++|||+. +++.++.++
T Consensus 117 v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~pi~~~GGi~~~~~~~~~~~~ 191 (200)
T cd04722 117 VVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-----GSKVPVIAGGGINDPEDAAEALAL 191 (200)
T ss_pred EEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----cCCCCEEEECCCCCHHHHHHHHHh
Confidence 999998877654431112248999887777665554433322233333332 23578999999997 999999999
Q ss_pred CCCEEEEcc
Q 029661 156 GANALVAGS 164 (190)
Q Consensus 156 Gad~~VvGs 164 (190)
|||.+.+||
T Consensus 192 Gad~v~vgs 200 (200)
T cd04722 192 GADGVIVGS 200 (200)
T ss_pred CCCEEEecC
Confidence 999999997
No 41
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=99.48 E-value=3e-13 Score=108.33 Aligned_cols=160 Identities=20% Similarity=0.254 Sum_probs=107.8
Q ss_pred CCCHHHHHHhccCCCCcEEEEEeecChHH----HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661 10 TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 85 (190)
Q Consensus 10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~~----~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t 85 (190)
++|++.+++|++.. +++.+|+|..|... +++.+++.|+|++|+|+.++ .++++.+++.+++++..+.+....+.
T Consensus 36 ~~g~~~i~~l~~~~-~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~G-~~~l~~~~~~~~~~~~~~~~v~~lss 113 (216)
T cd04725 36 AAGPEIVKELRELG-FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGG-SDMLKAALEAAEEKGKGLFAVTVLSS 113 (216)
T ss_pred hcCHHHHHHHHHCC-CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcCC-HHHHHHHHHHHhccCCeEEEEEcCCC
Confidence 37999999999864 89999999999754 44557889999999999874 67889999998887766654433332
Q ss_pred -CHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc----------cH
Q 029661 86 -SLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK----------NA 149 (190)
Q Consensus 86 -~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e----------~~ 149 (190)
+-+.+++.... +..+.-+..+-|..|-...+.-.+.++ +.. +.++. .+.+||+++ ++
T Consensus 114 ~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~~~i~---~~~---~~~~~-~ltPGI~~~~~~~dq~r~~~~ 186 (216)
T cd04725 114 PGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATEPEALR---RAL---GPDFL-ILTPGIGAQGSGDDQKRGGTP 186 (216)
T ss_pred CCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcchHHHH---Hhh---CCCCe-EEcCCcCCCCCccccccccCH
Confidence 23333321110 001111112223233222223333342 222 12454 589999998 99
Q ss_pred HHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 029661 150 YKVIEAGANALVAGSAVFGAKDYAEAIKG 178 (190)
Q Consensus 150 ~~~~~aGad~~VvGsaI~~~~dp~~~~~~ 178 (190)
.++.++|++++++||+|++++||.+++++
T Consensus 187 ~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 187 EDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred HHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 99999999999999999999999988875
No 42
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.46 E-value=2.6e-12 Score=101.67 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=100.3
Q ss_pred EEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeec
Q 029661 29 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP 107 (190)
Q Consensus 29 ~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~p 107 (190)
..+++++ ..+.+.+.|+|++++.... ..+....+.. .+..+|+.++ +.+.+.+..+ .+||+.+-.+.|
T Consensus 58 ~~liin~---~~~la~~~~~~gvHl~~~~---~~~~~~r~~~--~~~~ig~s~~---s~e~a~~a~~~Gadyi~~g~v~~ 126 (201)
T PRK07695 58 SKLIIND---RVDIALLLNIHRVQLGYRS---FSVRSVREKF--PYLHVGYSVH---SLEEAIQAEKNGADYVVYGHVFP 126 (201)
T ss_pred CeEEEEC---HHHHHHHcCCCEEEeCccc---CCHHHHHHhC--CCCEEEEeCC---CHHHHHHHHHcCCCEEEECCCCC
Confidence 4677887 5677888999999997652 1232222211 2567777643 4444555433 589997655555
Q ss_pred CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhccc
Q 029661 108 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 186 (190)
Q Consensus 108 G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~~~ 186 (190)
....+...+..++.++++++.. ++++.+.|||+++++.++.+.|+|++.+||+|++++||.++++++++.+++.
T Consensus 127 t~~k~~~~~~g~~~l~~~~~~~-----~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~~ 200 (201)
T PRK07695 127 TDCKKGVPARGLEELSDIARAL-----SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKKW 200 (201)
T ss_pred CCCCCCCCCCCHHHHHHHHHhC-----CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhhc
Confidence 4433333333456666666543 4789999999999999999999999999999999999999999999887653
No 43
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.44 E-value=8e-13 Score=114.43 Aligned_cols=149 Identities=17% Similarity=0.103 Sum_probs=113.4
Q ss_pred EEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeee
Q 029661 27 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVN 106 (190)
Q Consensus 27 i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~ 106 (190)
..+.|.++| +++.+.+.|||+|++..+. .. ....+.+...+..+|++.+. ..|..+.....+|||.+-.+.
T Consensus 260 ~gv~LiIND---~~dlAl~~gAdGVHLGQeD--L~--~~~aR~ilg~~~iIGvStHs--~eEl~~A~~~gaDYI~lGPIF 330 (437)
T PRK12290 260 YNAQVFIND---YWQLAIKHQAYGVHLGQED--LE--EANLAQLTDAGIRLGLSTHG--YYELLRIVQIQPSYIALGHIF 330 (437)
T ss_pred hCCEEEEEC---HHHHHHHcCCCEEEcChHH--cc--hhhhhhhcCCCCEEEEecCC--HHHHHHHhhcCCCEEEECCcc
Confidence 356777888 7888999999999999874 21 22344444467788888752 333222223468999999999
Q ss_pred cCCCCc-ccchhhHHHHHHHHHHHhh----cCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 107 PGFGGQ-SFIESQVKKISDLRRMCLE----KGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 107 pG~~gq-~~~~~~~~ki~~~~~~~~~----~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
|..+-+ ...|..++++++++++... ...++++.+.|||+++|+.++.++||+++.+-|+|++++||.+++++|++
T Consensus 331 pT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~ 410 (437)
T PRK12290 331 PTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQ 410 (437)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHH
Confidence 876654 4567778888888877642 11357899999999999999999999999999999999999999999998
Q ss_pred hhc
Q 029661 182 SKR 184 (190)
Q Consensus 182 ~~~ 184 (190)
.+.
T Consensus 411 ~~~ 413 (437)
T PRK12290 411 VMA 413 (437)
T ss_pred HHh
Confidence 664
No 44
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.42 E-value=3.1e-12 Score=102.78 Aligned_cols=143 Identities=14% Similarity=0.018 Sum_probs=101.0
Q ss_pred EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHh-hcccceEEEEeee
Q 029661 28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVN 106 (190)
Q Consensus 28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~-~~~~d~i~~m~v~ 106 (190)
.+.|.++| .++.+.+.|+|+||+..+. ..+.+.-+ ....+..+|++. .++.+...+. -..+|||.+-.+.
T Consensus 71 gv~liINd---~~dlA~~~~adGVHLg~~d---~~~~~~r~-~~~~~~iiG~s~--~~s~~~a~~A~~~gaDYv~~Gpv~ 141 (221)
T PRK06512 71 GAAALIAG---DSRIAGRVKADGLHIEGNL---AALAEAIE-KHAPKMIVGFGN--LRDRHGAMEIGELRPDYLFFGKLG 141 (221)
T ss_pred CCEEEEeC---HHHHHHHhCCCEEEECccc---cCHHHHHH-hcCCCCEEEecC--CCCHHHHHHhhhcCCCEEEECCCC
Confidence 45667777 6888899999999998763 12322221 112234455542 2344433332 2458999998776
Q ss_pred cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhcc
Q 029661 107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 185 (190)
Q Consensus 107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~~ 185 (190)
+.. -....|..++.++++++.. ++++.+-||||++|+.++.++||+++.+-|+|++++||.++++++++.++.
T Consensus 142 t~t-K~~~~p~gl~~l~~~~~~~-----~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 142 ADN-KPEAHPRNLSLAEWWAEMI-----EIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred CCC-CCCCCCCChHHHHHHHHhC-----CCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 432 2224455677777766653 478999999999999999999999999999999999999999999987763
No 45
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=99.41 E-value=1.2e-13 Score=111.21 Aligned_cols=165 Identities=21% Similarity=0.252 Sum_probs=102.6
Q ss_pred CCC----HHHHHHhccCCCCcEEEEEeecChHHHHHH-------HHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-Cc-
Q 029661 10 TIG----PLVVDALRPVTDLPLDVHLMIVEPEQRVPD-------FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AK- 76 (190)
Q Consensus 10 ~~G----~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~-------~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~- 76 (190)
.+| ++.++.+++.. +++.+|+|+.|...+... +.+.|+|++|+|+.++ .+++..+++.++++| ..
T Consensus 38 ~~G~~~l~~~i~~l~~~~-~~I~~D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~~~~G-~~tl~~~~~~a~~~~~~~~ 115 (226)
T PF00215_consen 38 AYGLEALPEIIEELKERG-KPIFLDLKLGDIGNTVARYAEAGFAAFELGADAVTVHPFAG-DDTLEAAVKAAKKHGRKGV 115 (226)
T ss_dssp HHCHHHHHHHHHHHHHTT-SEEEEEEEE-SSHHHHHHHHHSCHHHHTTTESEEEEEGTTH-HHHHHHHHHHHHHTTESEE
T ss_pred cCChhhHHHHHHHHHHhc-CCEeeeeeecccchHHHHHHHHhhhhhcCCCcEEEEeccCC-HHHHHHHHHHHhccCCcce
Confidence 468 99999999865 899999999997654333 3689999999999984 788999999999998 34
Q ss_pred EEEEEcCCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHH----HHHHhhcCCCC-eEEEeCCCCc
Q 029661 77 AGVVLNPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDL----RRMCLEKGVNP-WIEVDGGVGP 146 (190)
Q Consensus 77 ~g~~i~p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~----~~~~~~~~~~~-~i~vdGGI~~ 146 (190)
+++.+-.+...+.+..+.. .+....-+...-|..|-...+.-. .+++. ..+.+ +... ..+..||++.
T Consensus 116 ~~v~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~G~v~~~~~~-~~~~~~~~~~~l~P--Gi~~~~~~~~~~~~~ 192 (226)
T PF00215_consen 116 FVVDLLSNPDSEDLQDLGLGVDQEIVHRAADLAAKAGVDGIVCSATEP-AIRKAGPNFKILTP--GIGAIQGAVAGGQKR 192 (226)
T ss_dssp EEEESTTSTTHHHHHHHHCTHHHHHHHHHHHHHHHTTEEEEEETTTCH-HHHHHTTTSEEEEE--SBSSSTCEECSSHHC
T ss_pred EEEEecCCCCHHHHHhhhcccHHHHHHHHHHhhccccccCcccccccc-cccccccchhhccC--CCCcccccCcccccc
Confidence 4444443333333333110 011000000011111211111111 23322 11111 2223 5677888887
Q ss_pred ccHHHHHH-cCCCEEEEcccccCCCCHHHHHHHH
Q 029661 147 KNAYKVIE-AGANALVAGSAVFGAKDYAEAIKGI 179 (190)
Q Consensus 147 e~~~~~~~-aGad~~VvGsaI~~~~dp~~~~~~l 179 (190)
.+.+.+.. .|+|++|+||+|++++||.++++++
T Consensus 193 ~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 193 ATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp HHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred cccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 77776655 8999999999999999999999874
No 46
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.37 E-value=1.9e-11 Score=100.25 Aligned_cols=160 Identities=17% Similarity=0.240 Sum_probs=109.5
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcch-HHHHHHHHHHhCCcEEEEEcCCCCH-H
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSL-S 88 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~-~~~~i~~i~~~g~~~g~~i~p~t~~-~ 88 (190)
-+|+.|++|++..++|+....+..+ ..-.+.+.++|+|+| .++. ..+ ..+.+..+|.. .++- +++....+ |
T Consensus 54 ~~p~~I~~I~~~V~iPVig~~kigh-~~Ea~~L~~~GvDiI---DeTe-~lrPade~~~~~K~~-f~vp-fmad~~~l~E 126 (287)
T TIGR00343 54 SDPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEALGVDYI---DESE-VLTPADWTFHIDKKK-FKVP-FVCGARDLGE 126 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEEeeccH-HHHHHHHHHcCCCEE---EccC-CCCcHHHHHHHHHHH-cCCC-EEccCCCHHH
Confidence 3789999999988999999777655 223566899999999 3432 222 35666666553 2333 34444444 5
Q ss_pred HHHHhhcccceEEEEeeecCCCCc-------------------------------ccchhhHHHHHHHHHHHhhcCCCCe
Q 029661 89 AIECVLDVVDLVLIMSVNPGFGGQ-------------------------------SFIESQVKKISDLRRMCLEKGVNPW 137 (190)
Q Consensus 89 ~~~~~~~~~d~i~~m~v~pG~~gq-------------------------------~~~~~~~~ki~~~~~~~~~~~~~~~ 137 (190)
.++.+-..+|+|-- +.+.|+ |. +-....++.|+++++.. +++
T Consensus 127 Alrai~~GadmI~T-t~e~gT-g~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-----~iP 199 (287)
T TIGR00343 127 ALRRINEGAAMIRT-KGEAGT-GNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-----KLP 199 (287)
T ss_pred HHHHHHCCCCEEec-cccCCC-ccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-----CCC
Confidence 55555566888741 223333 32 00122345555555432 367
Q ss_pred EE--EeCCC-CcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 138 IE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 138 i~--vdGGI-~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
+. ..||| |++++..+.+.|||.+++||+||+++||.+.++++.+.+.
T Consensus 200 VV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 200 VVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred EEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 87 89999 8999999999999999999999999999999999988654
No 47
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.36 E-value=8.2e-11 Score=94.66 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=107.8
Q ss_pred CHHHHHHhccCCCCcEEEEEeec-Ch-----HHHHHHHHHcCCCEEEEcc-cC-CCcchHHHHHHHHHHhCCcEEEEEcC
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIV-EP-----EQRVPDFIKAGADIVSVHC-EQ-SSTIHLHRTLNQIKDLGAKAGVVLNP 83 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~-dp-----~~~i~~~~~~Gad~v~vh~-e~-~~~~~~~~~i~~i~~~g~~~g~~i~p 83 (190)
+...++.+++.+++++-+.=+-. .+ +.+++.+.++|+|++.+.. |- .+.+++.+.++.++++|+.+.+.+..
T Consensus 44 ~~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 44 QALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred CHHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 33456666665677776532222 11 2357889999999999854 21 02345778899999999998854432
Q ss_pred CCCHHHHHHhhcc-cceEEEEeee-cCCC-C-cccchhhHH-HHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCC
Q 029661 84 ATSLSAIECVLDV-VDLVLIMSVN-PGFG-G-QSFIESQVK-KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA 157 (190)
Q Consensus 84 ~t~~~~~~~~~~~-~d~i~~m~v~-pG~~-g-q~~~~~~~~-ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGa 157 (190)
.+.++.+.+. .|+|.++++. -|++ + +...|+.++ .++.+|+. ..+.++.+.|||+ ++.+..+.+.|+
T Consensus 124 ---~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~----~~~~pvi~GggI~~~e~~~~~~~~ga 196 (223)
T PRK04302 124 ---PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV----NPDVKVLCGAGISTGEDVKAALELGA 196 (223)
T ss_pred ---HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc----cCCCEEEEECCCCCHHHHHHHHcCCC
Confidence 4445554433 6888877653 2332 1 112233322 23333332 2247899999997 788989999999
Q ss_pred CEEEEcccccCCCCHHHHHHHHHHh
Q 029661 158 NALVAGSAVFGAKDYAEAIKGIKTS 182 (190)
Q Consensus 158 d~~VvGsaI~~~~dp~~~~~~l~~~ 182 (190)
|++++||++.+.+||.+.++.|.+.
T Consensus 197 dGvlVGsa~l~~~~~~~~~~~~~~~ 221 (223)
T PRK04302 197 DGVLLASGVVKAKDPEAALRDLVSP 221 (223)
T ss_pred CEEEEehHHhCCcCHHHHHHHHHhh
Confidence 9999999999999999998887653
No 48
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.36 E-value=3.8e-11 Score=96.82 Aligned_cols=143 Identities=15% Similarity=0.240 Sum_probs=102.8
Q ss_pred HHHHHhccCCCCcEEEEEeecC----hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661 14 LVVDALRPVTDLPLDVHLMIVE----PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 89 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~d----p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~ 89 (190)
+.++.+++..+.++.+-+...+ ..++++.+.++|+|.|++|... ....++.+++.++.++..+.+ .+.
T Consensus 43 ~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~-----~~~~~~~~~~~~i~~i~~v~~---~~~ 114 (236)
T cd04730 43 AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGP-----PAEVVERLKAAGIKVIPTVTS---VEE 114 (236)
T ss_pred HHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCC-----CHHHHHHHHHcCCEEEEeCCC---HHH
Confidence 4456666544457778888875 3467888999999999998652 356788888889888776543 344
Q ss_pred HHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHcCCCEEEEccccc
Q 029661 90 IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 90 ~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~aGad~~VvGsaI~ 167 (190)
++.+.+ .+|++.+.+..+|..+..+....++.++++++.. +.++.+.|||+. +++.++.++|||.+++||+++
T Consensus 115 ~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-----~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~ 189 (236)
T cd04730 115 ARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-----DIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 189 (236)
T ss_pred HHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-----CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhh
Confidence 444433 4899987665444333333234566677777654 368999999996 999999999999999999998
Q ss_pred CC
Q 029661 168 GA 169 (190)
Q Consensus 168 ~~ 169 (190)
+.
T Consensus 190 ~~ 191 (236)
T cd04730 190 AT 191 (236)
T ss_pred cC
Confidence 75
No 49
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.35 E-value=1.5e-11 Score=104.65 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=102.1
Q ss_pred EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH-hhcccceEEEEeee
Q 029661 28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC-VLDVVDLVLIMSVN 106 (190)
Q Consensus 28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~-~~~~~d~i~~m~v~ 106 (190)
.+.++++| .++.+...|+|+||+.... . .+ ...+.....+..+|.+++ + .+.+.+ .-..+|||.+-.+.
T Consensus 201 ~~~lIIND---~vdlAl~~~aDGVHLgq~d--l-~~-~~aR~llg~~~iIG~S~H--s-~~e~~~A~~~GaDYI~lGPvf 270 (347)
T PRK02615 201 GALFIVND---RVDIALAVDADGVHLGQED--L-PL-AVARQLLGPEKIIGRSTT--N-PEEMAKAIAEGADYIGVGPVF 270 (347)
T ss_pred CCeEEEeC---hHHHHHHcCCCEEEeChhh--c-CH-HHHHHhcCCCCEEEEecC--C-HHHHHHHHHcCCCEEEECCCc
Confidence 45677887 6788899999999997653 1 11 122222223445566664 4 333444 33469999987777
Q ss_pred cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhcc
Q 029661 107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 185 (190)
Q Consensus 107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~~ 185 (190)
|..+-....+..++.++.+++.. +.++.+-|||+++|+.++.++|++++.++|+|++++||.++++++.+.+.+
T Consensus 271 ~T~tKp~~~~~Gle~l~~~~~~~-----~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 271 PTPTKPGKAPAGLEYLKYAAKEA-----PIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred CCCCCCCCCCCCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 65433222344567777776543 468899999999999999999999999999999999999999999887754
No 50
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.34 E-value=5.1e-11 Score=97.63 Aligned_cols=161 Identities=15% Similarity=0.195 Sum_probs=111.3
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
-+++.|++||+..++|+..-.+... ..-++.+.++|+|+| .++.-.....+++..+|..- . .++++.-..++..
T Consensus 52 ~~~~~I~~Ik~~V~iPVIGi~K~~~-~~Ea~~L~eaGvDiI---DaT~r~rP~~~~~~~iK~~~-~-~l~MAD~stleEa 125 (283)
T cd04727 52 ADPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEALGVDMI---DESEVLTPADEEHHIDKHKF-K-VPFVCGARNLGEA 125 (283)
T ss_pred CCHHHHHHHHHhCCCCeEEeeehhH-HHHHHHHHHcCCCEE---eccCCCCcHHHHHHHHHHHc-C-CcEEccCCCHHHH
Confidence 3789999999988999999555443 334677899999999 34311122467888887742 2 2344544566544
Q ss_pred -HHhhcccceEEEEeeecCCCCc-------------------cc-----------chhhHHHHHHHHHHHhhcCCCCeEE
Q 029661 91 -ECVLDVVDLVLIMSVNPGFGGQ-------------------SF-----------IESQVKKISDLRRMCLEKGVNPWIE 139 (190)
Q Consensus 91 -~~~~~~~d~i~~m~v~pG~~gq-------------------~~-----------~~~~~~ki~~~~~~~~~~~~~~~i~ 139 (190)
..+-..+|+|-- +.+ |++|. .+ .+..++.|+++++.. ++++.
T Consensus 126 l~a~~~Gad~I~T-Tl~-gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-----~iPVV 198 (283)
T cd04727 126 LRRISEGAAMIRT-KGE-AGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-----RLPVV 198 (283)
T ss_pred HHHHHCCCCEEEe-cCC-CCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-----CCCeE
Confidence 444445898842 122 33333 11 122355566666543 36776
Q ss_pred --EeCCC-CcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 140 --VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 140 --vdGGI-~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
..||| ++++++++.++|||.+++||+||+++||.+.+++|++.+.
T Consensus 199 ~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 199 NFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 89999 8999999999999999999999999999999999988765
No 51
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.32 E-value=9e-12 Score=97.92 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=91.3
Q ss_pred EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeee
Q 029661 28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVN 106 (190)
Q Consensus 28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~ 106 (190)
.+.+++.+ +++.+.+.|+|+|++.... . .. ...+.....+..+|+.++ +. +.+.+.. ..+||+.+-.+.
T Consensus 57 ~~~l~i~~---~~~la~~~g~~GvHl~~~~--~-~~-~~~r~~~~~~~~ig~s~h--~~-~e~~~a~~~g~dyi~~~~v~ 126 (196)
T TIGR00693 57 GVPFIVND---RVDLALALGADGVHLGQDD--L-PA-SEARALLGPDKIIGVSTH--NL-EELAEAEAEGADYIGFGPIF 126 (196)
T ss_pred CCeEEEEC---HHHHHHHcCCCEEecCccc--C-CH-HHHHHhcCCCCEEEEeCC--CH-HHHHHHhHcCCCEEEECCcc
Confidence 34555655 5677888999999986542 1 12 233333334566666654 33 3333433 358999875555
Q ss_pred cCCCC-cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 029661 107 PGFGG-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179 (190)
Q Consensus 107 pG~~g-q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l 179 (190)
|.... +...+..++.++++++... +.++.+.|||++++++++.+.|+|++++||+|++++||.++++.|
T Consensus 127 ~t~~k~~~~~~~g~~~l~~~~~~~~----~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 127 PTPTKKDPAPPAGVELLREIAATSI----DIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence 43221 1112224566666665432 367999999999999999999999999999999999999988753
No 52
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.30 E-value=2.9e-11 Score=96.55 Aligned_cols=143 Identities=20% Similarity=0.153 Sum_probs=100.1
Q ss_pred EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeee
Q 029661 28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVN 106 (190)
Q Consensus 28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~ 106 (190)
.+.++++| .++.+.+.|+|+|++..+. . .+ ...+.+...+..+|++++ ..+.+.+.. ..+||+.+-.+.
T Consensus 63 ~~~liInd---~~~lA~~~~adGVHlg~~d--~-~~-~~~r~~~~~~~~iG~S~H---~~~e~~~A~~~gaDYi~lgpvf 132 (211)
T PRK03512 63 QARLFIND---YWRLAIKHQAYGVHLGQED--L-ET-ADLNAIRAAGLRLGVSTH---DDMEIDVALAARPSYIALGHVF 132 (211)
T ss_pred CCeEEEeC---HHHHHHHcCCCEEEcChHh--C-CH-HHHHHhcCCCCEEEEeCC---CHHHHHHHhhcCCCEEEECCcc
Confidence 46667777 6778888999999997653 1 12 223333334555666664 333344433 368999998887
Q ss_pred cCCCCcc-cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 107 PGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 107 pG~~gq~-~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
|..+-+. -.+..++.++++.+.. .+.++.+-|||+++|+.++.++|++++.+-|+|++++||.++++++++.+.
T Consensus 133 ~T~tK~~~~~~~G~~~l~~~~~~~----~~~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~ 207 (211)
T PRK03512 133 PTQTKQMPSAPQGLAQLARHVERL----ADYPTVAIGGISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAE 207 (211)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEEECCCCHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHh
Confidence 7644321 1233455565554432 247899999999999999999999999999999999999999999988653
No 53
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.28 E-value=1.6e-10 Score=92.73 Aligned_cols=154 Identities=21% Similarity=0.308 Sum_probs=102.6
Q ss_pred CHHHHHHhccCCCCcEEEEEe--------ecCh-HHHHHHHHHcCCCEEEEcccCC--C-cchHHHHHHHHHH-hCCcEE
Q 029661 12 GPLVVDALRPVTDLPLDVHLM--------IVEP-EQRVPDFIKAGADIVSVHCEQS--S-TIHLHRTLNQIKD-LGAKAG 78 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlm--------v~dp-~~~i~~~~~~Gad~v~vh~e~~--~-~~~~~~~i~~i~~-~g~~~g 78 (190)
+++.++.+|+.+++|+..-+. ..++ .++++.+.++|||.|++-.-.. + .++..++++.+++ .++.+.
T Consensus 44 ~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi 123 (221)
T PRK01130 44 GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLM 123 (221)
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEE
Confidence 478899998888889864221 1122 3468899999999777632210 0 1467889999999 666655
Q ss_pred EEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCc--ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 79 VVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 79 ~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
.- .++.++++...+ .+|++.+- . -|..+. ...+..++.++++++.. +.++.+.|||+ ++++.++.+
T Consensus 124 ~~---v~t~ee~~~a~~~G~d~i~~~-~-~g~t~~~~~~~~~~~~~i~~i~~~~-----~iPvia~GGI~t~~~~~~~l~ 193 (221)
T PRK01130 124 AD---CSTLEEGLAAQKLGFDFIGTT-L-SGYTEETKKPEEPDFALLKELLKAV-----GCPVIAEGRINTPEQAKKALE 193 (221)
T ss_pred Ee---CCCHHHHHHHHHcCCCEEEcC-C-ceeecCCCCCCCcCHHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHH
Confidence 43 345566655544 37887531 1 122221 12233466677777654 36899999995 899999999
Q ss_pred cCCCEEEEcccccCCCCHHHH
Q 029661 155 AGANALVAGSAVFGAKDYAEA 175 (190)
Q Consensus 155 aGad~~VvGsaI~~~~dp~~~ 175 (190)
+|||++++||+|++.+++.+.
T Consensus 194 ~GadgV~iGsai~~~~~~~~~ 214 (221)
T PRK01130 194 LGAHAVVVGGAITRPEEITKW 214 (221)
T ss_pred CCCCEEEEchHhcCCHHHHHH
Confidence 999999999999986555443
No 54
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.26 E-value=1e-10 Score=96.20 Aligned_cols=163 Identities=14% Similarity=0.203 Sum_probs=107.8
Q ss_pred CCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH-H
Q 029661 10 TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-S 88 (190)
Q Consensus 10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-~ 88 (190)
.-+|+.|+++++..++|+..-.+..+ ..-.+.+.++|+|+| .++.-.....+.+..+|.. .++- +++....+ |
T Consensus 60 m~~p~~I~aIk~~V~iPVigk~Righ-~~Ea~~L~~~GvDiI---D~Te~lrpad~~~~~~K~~-f~~~-fmad~~~l~E 133 (293)
T PRK04180 60 MADPKMIEEIMDAVSIPVMAKARIGH-FVEAQILEALGVDYI---DESEVLTPADEEYHIDKWD-FTVP-FVCGARNLGE 133 (293)
T ss_pred cCCHHHHHHHHHhCCCCeEEeehhhH-HHHHHHHHHcCCCEE---eccCCCCchHHHHHHHHHH-cCCC-EEccCCCHHH
Confidence 45899999999988999998555443 223556899999999 3432112234556655553 2333 34434444 4
Q ss_pred HHHHhhcccceEEEEeeecCCCC-----------------------cc------cchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661 89 AIECVLDVVDLVLIMSVNPGFGG-----------------------QS------FIESQVKKISDLRRMCLEKGVNPWIE 139 (190)
Q Consensus 89 ~~~~~~~~~d~i~~m~v~pG~~g-----------------------q~------~~~~~~~ki~~~~~~~~~~~~~~~i~ 139 (190)
.++.+-..+|+|-- +-++|++. .. .....++.|+++++.. ++++.
T Consensus 134 Alrai~~GadmI~T-tge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-----~iPVV 207 (293)
T PRK04180 134 ALRRIAEGAAMIRT-KGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG-----RLPVV 207 (293)
T ss_pred HHHHHHCCCCeeec-cCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-----CCCEE
Confidence 55555556888731 11233321 00 0112344455555432 36776
Q ss_pred --EeCCC-CcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 140 --VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 140 --vdGGI-~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
+.||| +++++.++.++|||.+++||+||+++||.+.+++|.+.+.
T Consensus 208 ~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 208 NFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred EEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 89999 8999999999999999999999999999999999988664
No 55
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.24 E-value=2.5e-10 Score=90.82 Aligned_cols=151 Identities=21% Similarity=0.233 Sum_probs=106.2
Q ss_pred CHHHHHHhccC-CC-CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661 12 GPLVVDALRPV-TD-LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 89 (190)
Q Consensus 12 G~~~v~~i~~~-~~-~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~ 89 (190)
+.+.++.|++. ++ ..+-+..-+ +++ -++.+.++||+.++.+... .++++.+++.|..++.-+ .|+-|.
T Consensus 48 ~~~~i~~l~~~~~~~~~iGaGTV~-~~~-~~~~a~~aGA~fivsp~~~------~~v~~~~~~~~~~~~~G~--~t~~E~ 117 (206)
T PRK09140 48 PFDSIAALVKALGDRALIGAGTVL-SPE-QVDRLADAGGRLIVTPNTD------PEVIRRAVALGMVVMPGV--ATPTEA 117 (206)
T ss_pred HHHHHHHHHHHcCCCcEEeEEecC-CHH-HHHHHHHcCCCEEECCCCC------HHHHHHHHHCCCcEEccc--CCHHHH
Confidence 44567777753 32 455554422 333 5688999999999998762 246778888888877764 455443
Q ss_pred HHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.+.+-..+|||-+ .|. ..+. ++.++++++.++ .++++...||||++|++++.++|+|.+.+||+||++
T Consensus 118 ~~A~~~Gad~vk~---Fpa---~~~G---~~~l~~l~~~~~---~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~~ 185 (206)
T PRK09140 118 FAALRAGAQALKL---FPA---SQLG---PAGIKALRAVLP---PDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRP 185 (206)
T ss_pred HHHHHcCCCEEEE---CCC---CCCC---HHHHHHHHhhcC---CCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhccc
Confidence 4444446899975 453 1222 455666666553 147899999999999999999999999999999986
Q ss_pred ----CCHHHHHHHHHHhhc
Q 029661 170 ----KDYAEAIKGIKTSKR 184 (190)
Q Consensus 170 ----~dp~~~~~~l~~~~~ 184 (190)
+++.+.++++++.++
T Consensus 186 ~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 186 GQSAEEVAERARAFVAAYR 204 (206)
T ss_pred ccChHHHHHHHHHHHHHHh
Confidence 788888888877654
No 56
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.22 E-value=3.5e-10 Score=90.61 Aligned_cols=153 Identities=21% Similarity=0.289 Sum_probs=99.2
Q ss_pred CHHHHHHhccCCCCcEEE----EEe----ecCh-HHHHHHHHHcCCCEEEEcccCC--C-cchHHHHHHHHHHhCCcEEE
Q 029661 12 GPLVVDALRPVTDLPLDV----HLM----IVEP-EQRVPDFIKAGADIVSVHCEQS--S-TIHLHRTLNQIKDLGAKAGV 79 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~----hlm----v~dp-~~~i~~~~~~Gad~v~vh~e~~--~-~~~~~~~i~~i~~~g~~~g~ 79 (190)
+++.++.+|+.+++|+.. |+- ..++ ...++.+.++|||.|.+-.... + .+++.++++.++++| ..-+
T Consensus 48 ~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~i 126 (219)
T cd04729 48 GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLL 126 (219)
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeE
Confidence 356788888777888864 220 0112 2367889999999888742110 0 136788999999998 3333
Q ss_pred EEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661 80 VLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 155 (190)
Q Consensus 80 ~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a 155 (190)
.....|+-+ ..... ..+|++.+- .-|..++. .....++.++++++.. +.++.+.|||+ ++++.++.++
T Consensus 127 iv~v~t~~e-a~~a~~~G~d~i~~~--~~g~t~~~~~~~~~~~~~l~~i~~~~-----~ipvia~GGI~~~~~~~~~l~~ 198 (219)
T cd04729 127 MADISTLEE-ALNAAKLGFDIIGTT--LSGYTEETAKTEDPDFELLKELRKAL-----GIPVIAEGRINSPEQAAKALEL 198 (219)
T ss_pred EEECCCHHH-HHHHHHcCCCEEEcc--CccccccccCCCCCCHHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHHHC
Confidence 444445443 33333 347887421 11332211 1122356667766654 36899999995 8999999999
Q ss_pred CCCEEEEcccccCCCCHH
Q 029661 156 GANALVAGSAVFGAKDYA 173 (190)
Q Consensus 156 Gad~~VvGsaI~~~~dp~ 173 (190)
|||++.+||+|++.+||.
T Consensus 199 GadgV~vGsal~~~~~~~ 216 (219)
T cd04729 199 GADAVVVGSAITRPEHIT 216 (219)
T ss_pred CCCEEEEchHHhChHhHh
Confidence 999999999999988775
No 57
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.17 E-value=2.9e-09 Score=82.77 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=101.7
Q ss_pred CHHHHHHhccCCCCcEEEEEeecC--------h-HHHHHHHHHcCCCEEEEcccCC-CcchHHHHHHHHHHhCCcEEEEE
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVE--------P-EQRVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVL 81 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~d--------p-~~~i~~~~~~Gad~v~vh~e~~-~~~~~~~~i~~i~~~g~~~g~~i 81 (190)
|++-|+++|+.+++|+.==.|-.. | .+-++.+.++|+|+|-+-+-.- -.+++.++++.+|+.+..+.-.+
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADi 99 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKYQLVMADI 99 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeec
Confidence 788999999988999877555421 2 3567889999999999854210 02568999999999983323334
Q ss_pred cCCCCHHHHHHhhc-ccceEEEEeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCC
Q 029661 82 NPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN 158 (190)
Q Consensus 82 ~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad 158 (190)
+ .++......+ .+|+|. +.--|+..... ....++.++++++. +.++-..|+|+ |+.+.++.++||+
T Consensus 100 s---t~ee~~~A~~~G~D~I~--TTLsGYT~~t~~~~pD~~lv~~l~~~------~~pvIaEGri~tpe~a~~al~~GA~ 168 (192)
T PF04131_consen 100 S---TLEEAINAAELGFDIIG--TTLSGYTPYTKGDGPDFELVRELVQA------DVPVIAEGRIHTPEQAAKALELGAH 168 (192)
T ss_dssp S---SHHHHHHHHHTT-SEEE---TTTTSSTTSTTSSHHHHHHHHHHHT------TSEEEEESS--SHHHHHHHHHTT-S
T ss_pred C---CHHHHHHHHHcCCCEEE--cccccCCCCCCCCCCCHHHHHHHHhC------CCcEeecCCCCCHHHHHHHHhcCCe
Confidence 3 4554444333 489884 33346654332 23346667666652 36788999998 8999999999999
Q ss_pred EEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 159 ALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 159 ~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
.+||||+|++ |..-.+++.+.++
T Consensus 169 aVVVGsAITr---P~~It~~F~~ai~ 191 (192)
T PF04131_consen 169 AVVVGSAITR---PQEITKRFVDAIK 191 (192)
T ss_dssp EEEE-HHHH----HHHHHHHHHHHCH
T ss_pred EEEECcccCC---HHHHHHHHHHHHh
Confidence 9999999998 7788888877664
No 58
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.15 E-value=5.7e-10 Score=99.69 Aligned_cols=144 Identities=21% Similarity=0.191 Sum_probs=101.4
Q ss_pred EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeeec
Q 029661 28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP 107 (190)
Q Consensus 28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~p 107 (190)
.+.|+++| +++.+.+.|+|+||+..+. . ... ..+.....+..+|+.++ +..+..+..-..+|||.+-.+.|
T Consensus 351 ~~~liind---~~~lA~~~~adGvHl~~~d--~-~~~-~~r~~~~~~~~iG~S~h--~~~e~~~a~~~gadyi~~gpif~ 421 (502)
T PLN02898 351 GVPLLIND---RVDVALACDADGVHLGQSD--M-PVR-LARSLLGPGKIIGVSCK--TPEQAEQAWKDGADYIGCGGVFP 421 (502)
T ss_pred CCEEEEcC---hHHHHHhcCCCEEEeChHh--c-CHH-HHHHhcCCCCEEEEeCC--CHHHHHHHhhcCCCEEEECCeec
Confidence 45567777 6788888999999997653 1 121 22222223456666654 34332233334699999877777
Q ss_pred CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC---EEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 108 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN---ALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 108 G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad---~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
..+-....+..++.++++.+.. +.++.+.|||+++|+.++.++|++ ++.++|+|++++||.++++++++.+.
T Consensus 422 t~tk~~~~~~g~~~~~~~~~~~-----~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~ 496 (502)
T PLN02898 422 TNTKANNKTIGLDGLREVCEAS-----KLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILT 496 (502)
T ss_pred CCCCCCCCCCCHHHHHHHHHcC-----CCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHH
Confidence 6443223344567777776543 478999999999999999999999 99999999999999999999988765
Q ss_pred c
Q 029661 185 P 185 (190)
Q Consensus 185 ~ 185 (190)
+
T Consensus 497 ~ 497 (502)
T PLN02898 497 E 497 (502)
T ss_pred H
Confidence 3
No 59
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=99.06 E-value=7.7e-09 Score=84.15 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=116.6
Q ss_pred CccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE
Q 029661 2 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 81 (190)
Q Consensus 2 Dg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i 81 (190)
|++| |.-..+.++.+|+.+++|+..+=-+-||....+ +..+|||.|.++....+.+.+.++++.+++.|+.+-+-+
T Consensus 83 e~~~---F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~e-a~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 83 DQSY---FGGSLEDLKSVSSELKIPVLRKDFILDEIQIRE-ARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred CCCc---CCCCHHHHHHHHHhcCCCEEeccccCCHHHHHH-HHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEE
Confidence 4555 667888999999888899988766778876655 455999999999775334468999999999999999988
Q ss_pred cCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 82 NPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 82 ~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
+....+++... ..++.|.+=..+. ..| .-.++.-.++..++++ +..+..-+||+ ++++..+.++ +|.+
T Consensus 159 h~~~El~~a~~--~ga~iiGINnRdL----~t~-~vd~~~~~~L~~~ip~---~~~~IsESGI~t~~d~~~l~~~-~dav 227 (247)
T PRK13957 159 HTEDEAKLALD--CGAEIIGINTRDL----DTF-QIHQNLVEEVAAFLPP---NIVKVGESGIESRSDLDKFRKL-VDAA 227 (247)
T ss_pred CCHHHHHHHHh--CCCCEEEEeCCCC----ccc-eECHHHHHHHHhhCCC---CcEEEEcCCCCCHHHHHHHHHh-CCEE
Confidence 75444433322 2466654322221 112 1124444566677663 23444679998 7999998886 9999
Q ss_pred EEcccccCCCCHHHHHHHH
Q 029661 161 VAGSAVFGAKDYAEAIKGI 179 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l 179 (190)
.+|+++.+++||.+++++|
T Consensus 228 LvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 228 LIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred EECHHHhCCCCHHHHHHHh
Confidence 9999999999999988765
No 60
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.05 E-value=4e-09 Score=84.36 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=104.1
Q ss_pred CHHHHHHhccC-C---CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 12 GPLVVDALRPV-T---DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 12 G~~~v~~i~~~-~---~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
..+.++.|++. . +..+-+-. |.+++ -++.+.++||+.+.-+.- -.++++.++++|+....-.. ||-
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGT-V~~~~-~~~~a~~aGA~FivsP~~------~~~v~~~~~~~~i~~iPG~~--T~~ 120 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGT-VLDAV-TARLAILAGAQFIVSPSF------NRETAKICNLYQIPYLPGCM--TVT 120 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeee-CCCHH-HHHHHHHcCCCEEECCCC------CHHHHHHHHHcCCCEECCcC--CHH
Confidence 45678888753 2 34565654 34455 457899999999986654 23588999998887554332 444
Q ss_pred HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661 88 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 88 ~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~ 167 (190)
|...-+...+|+|-+ .|.. .+. ++.++.++...+ +.++...||||++|+.++.++|++.+.+||+++
T Consensus 121 E~~~A~~~Gad~vkl---FPa~---~~G---~~~ik~l~~~~p----~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 121 EIVTALEAGSEIVKL---FPGS---TLG---PSFIKAIKGPLP----QVNVMVTGGVNLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred HHHHHHHcCCCEEEE---CCcc---cCC---HHHHHHHhhhCC----CCEEEEECCCCHHHHHHHHHCCCcEEEEchHHh
Confidence 444444456899875 5531 122 444666666554 378999999999999999999999999999999
Q ss_pred CC------CCHHHHHHHHHHhhc
Q 029661 168 GA------KDYAEAIKGIKTSKR 184 (190)
Q Consensus 168 ~~------~dp~~~~~~l~~~~~ 184 (190)
+. +++.+.++++.+.++
T Consensus 188 ~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 188 KLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred CccccCCHHHHHHHHHHHHHHHH
Confidence 86 456677777766544
No 61
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=99.05 E-value=1.5e-08 Score=80.24 Aligned_cols=148 Identities=20% Similarity=0.219 Sum_probs=97.0
Q ss_pred CHHHHHHhccCC-CCcEEEEEeecC-hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH-hCCcEE--EEEcCCCC
Q 029661 12 GPLVVDALRPVT-DLPLDVHLMIVE-PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-LGAKAG--VVLNPATS 86 (190)
Q Consensus 12 G~~~v~~i~~~~-~~~i~~hlmv~d-p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~-~g~~~g--~~i~p~t~ 86 (190)
.++..++|++.. ...-.+-+.+++ +....+.+.+.|+|+|++|... ++ ..++.+|+ .|.++. +.++..+.
T Consensus 36 ~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e----~~-~~~~~l~~~~~~~~i~~i~~~~~~~ 110 (203)
T cd00405 36 SPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE----SP-EYCAQLRARLGLPVIKAIRVKDEED 110 (203)
T ss_pred CHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC----CH-HHHHHHHhhcCCcEEEEEecCChhh
Confidence 467778888753 323345556654 4566677889999999999762 22 34556665 366665 33443334
Q ss_pred HHHHHHhhcccceEEEEeeecC---CCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC-CCEEEE
Q 029661 87 LSAIECVLDVVDLVLIMSVNPG---FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALVA 162 (190)
Q Consensus 87 ~~~~~~~~~~~d~i~~m~v~pG---~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG-ad~~Vv 162 (190)
.+..+.+...+||+++=+..++ ..|+.+.-+. +++++ .+.++.+.||||++|+.++++.| ++++.+
T Consensus 111 ~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~---l~~~~-------~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv 180 (203)
T cd00405 111 LEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSL---LRGLA-------SRKPVILAGGLTPDNVAEAIRLVRPYGVDV 180 (203)
T ss_pred HHHhhhccccCCEEEEcCCCCCCCCCCcceEChHH---hhccc-------cCCCEEEECCCChHHHHHHHHhcCCCEEEc
Confidence 4333444456899987554332 2355654443 33333 13678899999999999999999 999999
Q ss_pred cccccCC---CCHHH
Q 029661 163 GSAVFGA---KDYAE 174 (190)
Q Consensus 163 GsaI~~~---~dp~~ 174 (190)
+|++..+ .|+..
T Consensus 181 ~S~ie~~pg~kd~~k 195 (203)
T cd00405 181 SSGVETSPGIKDPEK 195 (203)
T ss_pred CCcccCCCCCcCHHH
Confidence 9999977 45543
No 62
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=99.04 E-value=2.2e-09 Score=83.62 Aligned_cols=124 Identities=22% Similarity=0.188 Sum_probs=85.2
Q ss_pred EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeee
Q 029661 28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVN 106 (190)
Q Consensus 28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~ 106 (190)
.+.++++| ..+.+.+.|+|+|++.... . ... ..+.....+..+|.+++ +.+.+++.. ..+||+.+-.+.
T Consensus 56 ~~~liin~---~~~la~~~~~dGvHl~~~~--~-~~~-~~r~~~~~~~~ig~S~h---~~~e~~~a~~~g~dYv~~gpvf 125 (180)
T PF02581_consen 56 GVPLIIND---RVDLALELGADGVHLGQSD--L-PPA-EARKLLGPDKIIGASCH---SLEEAREAEELGADYVFLGPVF 125 (180)
T ss_dssp TGCEEEES----HHHHHHCT-SEEEEBTTS--S-SHH-HHHHHHTTTSEEEEEES---SHHHHHHHHHCTTSEEEEETSS
T ss_pred eEEEEecC---CHHHHHhcCCCEEEecccc--c-chH-HhhhhcccceEEEeecC---cHHHHHHhhhcCCCEEEECCcc
Confidence 44567777 6778888999999998763 2 232 23333445778888876 333344433 458999998888
Q ss_pred cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccc
Q 029661 107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 166 (190)
Q Consensus 107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI 166 (190)
|..+-....+..++.++++++..+ .++.+-|||+++|+.++.++|++++.+.|+|
T Consensus 126 ~T~sk~~~~~~g~~~l~~~~~~~~-----~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 126 PTSSKPGAPPLGLDGLREIARASP-----IPVYALGGITPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp --SSSSS-TTCHHHHHHHHHHHTS-----SCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred CCCCCccccccCHHHHHHHHHhCC-----CCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence 776644445666888888877653 6899999999999999999999999999886
No 63
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.04 E-value=2.1e-09 Score=100.28 Aligned_cols=147 Identities=19% Similarity=0.223 Sum_probs=100.7
Q ss_pred EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-----ccceEEE
Q 029661 28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-----VVDLVLI 102 (190)
Q Consensus 28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-----~~d~i~~ 102 (190)
.+.|.++| .++.+.++|+| |++..+. . .+ ...+.....+..+|++++....++.+..... .+||+.+
T Consensus 63 ~~~liind---~~~la~~~~~d-VHlg~~d--l-~~-~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~ 134 (755)
T PRK09517 63 GVALVVND---RLDVAVELGLH-VHIGQGD--T-PY-TQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGI 134 (755)
T ss_pred CCeEEEeC---hHHHHHHcCCC-eecCCCc--C-CH-HHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEE
Confidence 46677777 67788899999 5555442 1 12 2333332335567776652222222222112 2899999
Q ss_pred EeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 103 MSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 103 m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
-.+.|..+-..- .+-.++.++++++...+ .++++.+-|||+++|+.++.++||+++.+.|+|++++||.++++++++
T Consensus 135 Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~--~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~ 212 (755)
T PRK09517 135 GPVASTATKPDAPPALGVDGIAEIAAVAQD--HGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRT 212 (755)
T ss_pred CCccccCCCCCCCCCCCHHHHHHHHHhcCc--CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHH
Confidence 888776543222 23456778887777642 237899999999999999999999999999999999999999999987
Q ss_pred hhc
Q 029661 182 SKR 184 (190)
Q Consensus 182 ~~~ 184 (190)
.++
T Consensus 213 ~~~ 215 (755)
T PRK09517 213 AFQ 215 (755)
T ss_pred HHH
Confidence 665
No 64
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.02 E-value=1.8e-08 Score=81.19 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=105.2
Q ss_pred CCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEc------
Q 029661 10 TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLN------ 82 (190)
Q Consensus 10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~------ 82 (190)
....+.++++++..++|+.+.=-+.+++. ++.+.+.|||.|.+..+. ..++..+-+.+++.|. ++.+++.
T Consensus 59 ~~~~~~i~~i~~~~~~pv~~~GgI~~~e~-~~~~~~~Gad~vvigs~~--l~dp~~~~~i~~~~g~~~i~~sid~~~~~~ 135 (234)
T cd04732 59 PVNLELIEEIVKAVGIPVQVGGGIRSLED-IERLLDLGVSRVIIGTAA--VKNPELVKELLKEYGGERIVVGLDAKDGKV 135 (234)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCCcCCHHH-HHHHHHcCCCEEEECchH--HhChHHHHHHHHHcCCceEEEEEEeeCCEE
Confidence 44577899998877778777555666654 466778999999987664 4556666666677776 5555543
Q ss_pred ---------CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHH
Q 029661 83 ---------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK 151 (190)
Q Consensus 83 ---------p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~ 151 (190)
+.++.+.++.+.+. ++.++++.+...... ....++.++++++.. +.++.+.|||+ .+++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~---~g~~~~~i~~i~~~~-----~ipvi~~GGi~~~~di~~ 207 (234)
T cd04732 136 ATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTL---SGPNFELYKELAAAT-----GIPVIASGGVSSLDDIKA 207 (234)
T ss_pred EECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc---CCCCHHHHHHHHHhc-----CCCEEEecCCCCHHHHHH
Confidence 23445556666554 899999887642221 112355666666543 46899999999 688999
Q ss_pred HHHcCCCEEEEcccccCCC
Q 029661 152 VIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 152 ~~~aGad~~VvGsaI~~~~ 170 (190)
+.+.|+|.+++||+++..+
T Consensus 208 ~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 208 LKELGVAGVIVGKALYEGK 226 (234)
T ss_pred HHHCCCCEEEEeHHHHcCC
Confidence 9999999999999998765
No 65
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.01 E-value=8.4e-09 Score=80.93 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=89.9
Q ss_pred HHHHHHhccC-CCCcEEE-EEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 13 PLVVDALRPV-TDLPLDV-HLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~-hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
.+.++.+++. +....-. .+++. +.++.+.++|||+++.+... .+.++..+.++.... +-..|+-+..
T Consensus 51 ~e~~~~~~~~~~~~~~g~gtvl~~---d~~~~A~~~gAdgv~~p~~~------~~~~~~~~~~~~~~i--~G~~t~~e~~ 119 (187)
T PRK07455 51 AELISQLREKLPECIIGTGTILTL---EDLEEAIAAGAQFCFTPHVD------PELIEAAVAQDIPII--PGALTPTEIV 119 (187)
T ss_pred HHHHHHHHHhCCCcEEeEEEEEcH---HHHHHHHHcCCCEEECCCCC------HHHHHHHHHcCCCEE--cCcCCHHHHH
Confidence 4556666654 3222322 33333 47889999999999987652 234666667776532 2245565544
Q ss_pred HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
+.....+|||-+ .|... ...++.++.++...+ +.++.+.|||+++|++++.++||+.+.+||+|++.
T Consensus 120 ~A~~~Gadyv~~---Fpt~~-----~~G~~~l~~~~~~~~----~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 120 TAWQAGASCVKV---FPVQA-----VGGADYIKSLQGPLG----HIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred HHHHCCCCEEEE---CcCCc-----ccCHHHHHHHHhhCC----CCcEEEeCCCCHHHHHHHHHCCCeEEEEehhcccC
Confidence 444456899976 66421 112455666666543 37899999999999999999999999999999975
No 66
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.01 E-value=5.3e-09 Score=82.13 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=90.7
Q ss_pred CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
..+.++.+++. ++..+-+...+. +. .++.+.++|+|.++.... ..++++.++++|..+.+-+. |+-+..
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~-~~-~~~~a~~~Ga~~i~~p~~------~~~~~~~~~~~~~~~i~gv~--t~~e~~ 111 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLT-PE-QADAAIAAGAQFIVSPGL------DPEVVKAANRAGIPLLPGVA--TPTEIM 111 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCC-HH-HHHHHHHcCCCEEEcCCC------CHHHHHHHHHcCCcEECCcC--CHHHHH
Confidence 34567778775 456666655442 22 578889999999986544 23578888888877544333 444433
Q ss_pred HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC
Q 029661 91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
+..-..+|+|.+ .|. .+...+-++.+++..+ ++++.+.||||++|+.++.++|+|.+++||+||+
T Consensus 112 ~A~~~Gad~i~~---~p~------~~~g~~~~~~l~~~~~----~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 112 QALELGADIVKL---FPA------EAVGPAYIKALKGPFP----QVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred HHHHCCCCEEEE---cCC------cccCHHHHHHHHhhCC----CCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence 333345899975 442 1113344555554432 3689999999999999999999999999999994
No 67
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.00 E-value=1e-08 Score=82.93 Aligned_cols=128 Identities=22% Similarity=0.311 Sum_probs=86.5
Q ss_pred HHHHHHcCCCEEEEcccCCCc------chHHHHHHHHHHhCCcEEEEEcC--------CCC--HHH-HHHhhc-ccceEE
Q 029661 40 VPDFIKAGADIVSVHCEQSST------IHLHRTLNQIKDLGAKAGVVLNP--------ATS--LSA-IECVLD-VVDLVL 101 (190)
Q Consensus 40 i~~~~~~Gad~v~vh~e~~~~------~~~~~~i~~i~~~g~~~g~~i~p--------~t~--~~~-~~~~~~-~~d~i~ 101 (190)
++.+.+.||+.+.+..-.... +.+.++.+.++++|+++.+-... .++ ++. .+...+ .+|||-
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik 161 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVK 161 (235)
T ss_pred HHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEE
Confidence 778899999998665432111 24667777778899998775443 112 222 111222 479886
Q ss_pred EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-------ccHHHHHHcCCCEEEEcccccCCCCHHH
Q 029661 102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-------KNAYKVIEAGANALVAGSAVFGAKDYAE 174 (190)
Q Consensus 102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-------e~~~~~~~aGad~~VvGsaI~~~~dp~~ 174 (190)
+ .+ .+ .++.++++.+.. ..++.+.||++. ++++++.++||+++.+||+||+++||.+
T Consensus 162 ~---~~--~~------~~~~~~~i~~~~-----~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~ 225 (235)
T cd00958 162 T---KY--TG------DAESFKEVVEGC-----PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVA 225 (235)
T ss_pred e---cC--CC------CHHHHHHHHhcC-----CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHH
Confidence 5 11 11 244455554432 356778899865 5699999999999999999999999999
Q ss_pred HHHHHHHhh
Q 029661 175 AIKGIKTSK 183 (190)
Q Consensus 175 ~~~~l~~~~ 183 (190)
.++++++.+
T Consensus 226 ~~~~~~~~~ 234 (235)
T cd00958 226 MLRAISAVV 234 (235)
T ss_pred HHHHHHHHh
Confidence 999998753
No 68
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.99 E-value=7.5e-09 Score=84.70 Aligned_cols=156 Identities=24% Similarity=0.335 Sum_probs=107.4
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 91 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~ 91 (190)
+.+.++.+|+.+++|+...=.+-||... ..+..+|||.|.+.....+.+.+.++++.+++.|+.+-+-++... .++
T Consensus 97 s~~dL~~v~~~~~~PvL~KDFIid~~QI-~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~---El~ 172 (254)
T PF00218_consen 97 SLEDLRAVRKAVDLPVLRKDFIIDPYQI-YEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEE---ELE 172 (254)
T ss_dssp HHHHHHHHHHHSSS-EEEES---SHHHH-HHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHH---HHH
T ss_pred CHHHHHHHHHHhCCCcccccCCCCHHHH-HHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHH---HHH
Confidence 4567778887788898885445666644 467889999999987664445678999999999999999887433 344
Q ss_pred Hhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 92 CVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 92 ~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
..+. .++.|.+=..+.. .|. ..+++-.++...+++ +..+..-+||+ ++++..+.++|+|.+.+|+++.++
T Consensus 173 ~al~~~a~iiGINnRdL~----tf~-vd~~~~~~l~~~ip~---~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 173 RALEAGADIIGINNRDLK----TFE-VDLNRTEELAPLIPK---DVIVISESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp HHHHTT-SEEEEESBCTT----TCC-BHTHHHHHHHCHSHT---TSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred HHHHcCCCEEEEeCcccc----Ccc-cChHHHHHHHhhCcc---ceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 4333 4676654333322 221 224455566666664 35677899999 799999999999999999999999
Q ss_pred CCHHHHHHHH
Q 029661 170 KDYAEAIKGI 179 (190)
Q Consensus 170 ~dp~~~~~~l 179 (190)
+||.+++++|
T Consensus 245 ~d~~~~~~~L 254 (254)
T PF00218_consen 245 PDPGEALREL 254 (254)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHhcC
Confidence 9999998875
No 69
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.96 E-value=2.8e-08 Score=83.63 Aligned_cols=138 Identities=17% Similarity=0.287 Sum_probs=101.4
Q ss_pred HHHHhccCCCCcEEEEEeecCh--HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH
Q 029661 15 VVDALRPVTDLPLDVHLMIVEP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 92 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp--~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~ 92 (190)
.|+++|+.++.|+-+.++...| .+.++.+.+.|++.|.++.-. +.+.++.+|+.|+++...+ ++.+..+.
T Consensus 53 ~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~-----p~~~i~~lk~~g~~v~~~v---~s~~~a~~ 124 (307)
T TIGR03151 53 EIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGN-----PGKYIPRLKENGVKVIPVV---ASVALAKR 124 (307)
T ss_pred HHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCC-----cHHHHHHHHHcCCEEEEEc---CCHHHHHH
Confidence 3566777788999999988655 356777899999999997542 4568999999998765433 34555555
Q ss_pred hhc-ccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 93 VLD-VVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 93 ~~~-~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
..+ .+|.|.+.+.+.|.. |+ ...+..+.++++.. +++|.+.|||+ .+.+..+...|||.+.+||.+..
T Consensus 125 a~~~GaD~Ivv~g~eagGh~g~---~~~~~ll~~v~~~~-----~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 125 MEKAGADAVIAEGMESGGHIGE---LTTMALVPQVVDAV-----SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred HHHcCCCEEEEECcccCCCCCC---CcHHHHHHHHHHHh-----CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 444 499999887776532 32 23466667666543 47899999998 57799999999999999997653
No 70
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.95 E-value=3.8e-08 Score=79.21 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=102.8
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEc---------
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLN--------- 82 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~--------- 82 (190)
.+.++++++.++.|+.+.==+.+++ -++.+.++|||.+++..+. ..++..+.+.+++.| -++.+++.
T Consensus 61 ~~~i~~i~~~~~~pi~~ggGI~~~e-d~~~~~~~Ga~~vvlgs~~--l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~ 137 (230)
T TIGR00007 61 LPVIKKIVRETGVPVQVGGGIRSLE-DVEKLLDLGVDRVIIGTAA--VENPDLVKELLKEYGPERIVVSLDARGGEVAVK 137 (230)
T ss_pred HHHHHHHHHhcCCCEEEeCCcCCHH-HHHHHHHcCCCEEEEChHH--hhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEc
Confidence 5788999887777777755555544 3567888999999987664 456777788888887 34554433
Q ss_pred ------CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 83 ------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 83 ------p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
+.++.+.++.+.+. ++.++++.+... |.... ..++.++++++.. +.++.+.|||+ .+++..+.+
T Consensus 138 g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~--g~~~g-~~~~~i~~i~~~~-----~ipvia~GGi~~~~di~~~~~ 209 (230)
T TIGR00007 138 GWLEKSEVSLEELAKRLEELGLEGIIYTDISRD--GTLSG-PNFELTKELVKAV-----NVPVIASGGVSSIDDLIALKK 209 (230)
T ss_pred CCcccCCCCHHHHHHHHHhCCCCEEEEEeecCC--CCcCC-CCHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHH
Confidence 22345555656554 788888777642 22222 2366666666542 46899999999 699999999
Q ss_pred cCCCEEEEcccccCC
Q 029661 155 AGANALVAGSAVFGA 169 (190)
Q Consensus 155 aGad~~VvGsaI~~~ 169 (190)
.|||.+++||+++..
T Consensus 210 ~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 210 LGVYGVIVGKALYEG 224 (230)
T ss_pred CCCCEEEEeHHHHcC
Confidence 999999999998865
No 71
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.95 E-value=8.8e-09 Score=83.12 Aligned_cols=135 Identities=20% Similarity=0.197 Sum_probs=94.6
Q ss_pred HHHHHHc-CCCEEEEcccCCC---cchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCC
Q 029661 40 VPDFIKA-GADIVSVHCEQSS---TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG 111 (190)
Q Consensus 40 i~~~~~~-Gad~v~vh~e~~~---~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~g 111 (190)
.+.+.++ |-|||=+-....+ ..++.++++++++. |+.+...+++ ++...+.+.+ .++.|.-++...| +|
T Consensus 82 a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d--d~~~ar~l~~~G~~~vmPlg~pIG-sg 158 (248)
T cd04728 82 ARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTD--DPVLAKRLEDAGCAAVMPLGSPIG-SG 158 (248)
T ss_pred HHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCC-CC
Confidence 4445555 5688876432100 34688999999998 8887766654 3333445443 4787744445556 34
Q ss_pred cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 112 q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
+.. ...+.|+.+++. .+.++-++|||+ ++++.++.+.|||.+++||+|++++||...++.++..++
T Consensus 159 ~Gi--~~~~~I~~I~e~-----~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 159 QGL--LNPYNLRIIIER-----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred CCC--CCHHHHHHHHHh-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 432 124455555543 246899999999 899999999999999999999999999999999988664
No 72
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.95 E-value=3e-08 Score=79.19 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=97.2
Q ss_pred CCCCHHHHHHhcc-CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 9 ITIGPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 9 ~~~G~~~v~~i~~-~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
...+.+.|+.+|+ +++..+-+...+++ +-.+.+.++||+.++.+..+ . ++++.++++|+....- ..||-
T Consensus 50 ~~~~~~~I~~l~~~~p~~~IGAGTVl~~--~~a~~a~~aGA~FivsP~~~-----~-~vi~~a~~~~i~~iPG--~~Tpt 119 (212)
T PRK05718 50 TPAALEAIRLIAKEVPEALIGAGTVLNP--EQLAQAIEAGAQFIVSPGLT-----P-PLLKAAQEGPIPLIPG--VSTPS 119 (212)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeeccCH--HHHHHHHHcCCCEEECCCCC-----H-HHHHHHHHcCCCEeCC--CCCHH
Confidence 3457888999986 57888999987765 34788999999999998763 2 6888899877664322 23555
Q ss_pred HHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccc
Q 029661 88 SAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 166 (190)
Q Consensus 88 ~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI 166 (190)
| +.... -.+|.|-+ .|+. .+. -.+-++.++..++ +.++.+.|||+++|++++.++|+-.++.||.+
T Consensus 120 E-i~~a~~~Ga~~vKl---FPa~---~~g--g~~~lk~l~~p~p----~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L 186 (212)
T PRK05718 120 E-LMLGMELGLRTFKF---FPAE---ASG--GVKMLKALAGPFP----DVRFCPTGGISPANYRDYLALPNVLCIGGSWM 186 (212)
T ss_pred H-HHHHHHCCCCEEEE---ccch---hcc--CHHHHHHHhccCC----CCeEEEeCCCCHHHHHHHHhCCCEEEEEChHh
Confidence 5 33333 34777754 5532 111 2334566666654 47899999999999999999996666777888
Q ss_pred cCC
Q 029661 167 FGA 169 (190)
Q Consensus 167 ~~~ 169 (190)
|+.
T Consensus 187 ~~~ 189 (212)
T PRK05718 187 VPK 189 (212)
T ss_pred CCc
Confidence 864
No 73
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.94 E-value=9.6e-09 Score=82.99 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=94.1
Q ss_pred HHHHHHc-CCCEEEEcccC---CCcchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCC
Q 029661 40 VPDFIKA-GADIVSVHCEQ---SSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG 111 (190)
Q Consensus 40 i~~~~~~-Gad~v~vh~e~---~~~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~g 111 (190)
.+.+.++ |-+||=+-.-. ....++.++++++++. |+.+...+++ ++...+.+.+ .++.|.-++...| +|
T Consensus 82 a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~--d~~~ak~l~~~G~~~vmPlg~pIG-sg 158 (250)
T PRK00208 82 ARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD--DPVLAKRLEEAGCAAVMPLGAPIG-SG 158 (250)
T ss_pred HHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCC-CC
Confidence 3444554 56887763221 1135688999999998 8887756654 3334455444 4788744445557 34
Q ss_pred cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 112 q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
+... ..+.++.+++. .+.++.++|||+ ++++.++.+.|||.+++||+|++++||...+++++..++
T Consensus 159 ~gi~--~~~~i~~i~e~-----~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 159 LGLL--NPYNLRIIIEQ-----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred CCCC--CHHHHHHHHHh-----cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 4331 13445555554 246899999999 899999999999999999999999999999999988664
No 74
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.90 E-value=8.6e-08 Score=77.70 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=96.9
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcC--------
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNP-------- 83 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p-------- 83 (190)
.+.+++|.+.++.|+.++==+.+++ -++.+.++|||.|++-.+. ..+++.+.+..+..|. ++.+.+..
T Consensus 65 ~~~i~~i~~~~~~~l~v~GGi~~~~-~~~~~~~~Ga~~v~iGs~~--~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~ 141 (241)
T PRK13585 65 AEAIEKIIEAVGVPVQLGGGIRSAE-DAASLLDLGVDRVILGTAA--VENPEIVRELSEEFGSERVMVSLDAKDGEVVIK 141 (241)
T ss_pred HHHHHHHHHHcCCcEEEcCCcCCHH-HHHHHHHcCCCEEEEChHH--hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC
Confidence 4567777666666666643344443 3566778999999998764 4455555555566553 33333331
Q ss_pred ------C-CCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 84 ------A-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 84 ------~-t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
. ++.+..+.+.+ .++.+++..+.+.... .+..++.++++++.. +.++.+.|||+ ++++..+.+
T Consensus 142 g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~---~g~~~~~i~~i~~~~-----~iPvia~GGI~~~~di~~~~~ 213 (241)
T PRK13585 142 GWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL---EGVNTEPVKELVDSV-----DIPVIASGGVTTLDDLRALKE 213 (241)
T ss_pred CCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc---CCCCHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHH
Confidence 1 34555555543 3788988777643111 122355566666543 47899999999 899999999
Q ss_pred cCCCEEEEcccccCCCC
Q 029661 155 AGANALVAGSAVFGAKD 171 (190)
Q Consensus 155 aGad~~VvGsaI~~~~d 171 (190)
.||+.+++||++++.+.
T Consensus 214 ~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 214 AGAAGVVVGSALYKGKF 230 (241)
T ss_pred cCCCEEEEEHHHhcCCc
Confidence 99999999999998653
No 75
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.88 E-value=1.4e-08 Score=82.66 Aligned_cols=158 Identities=21% Similarity=0.298 Sum_probs=114.6
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 91 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~ 91 (190)
.++.++.+|...++|+.++=-+-||.. +..+...|||.|.+.....+.+.+.++.+.+++.|+.+-+-++....+++..
T Consensus 95 s~e~L~~v~~~v~~PvL~KDFiiD~yQ-I~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl 173 (254)
T COG0134 95 SFEDLRAVRAAVDLPVLRKDFIIDPYQ-IYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERAL 173 (254)
T ss_pred CHHHHHHHHHhcCCCeeeccCCCCHHH-HHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHH
Confidence 567888998888999988766677764 5567889999999987654345689999999999999999888544444333
Q ss_pred HhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661 92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 92 ~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
+ -.++.|- ++-- +=..| ...++.-.++..++++ +..+..-.||+ ++++..+.+.|||.|-+|+++.+++
T Consensus 174 ~--~ga~iIG---INnR-dL~tf-~vdl~~t~~la~~~p~---~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~ 243 (254)
T COG0134 174 K--LGAKIIG---INNR-DLTTL-EVDLETTEKLAPLIPK---DVILISESGISTPEDVRRLAKAGADAFLVGEALMRAD 243 (254)
T ss_pred h--CCCCEEE---EeCC-Ccchh-eecHHHHHHHHhhCCC---CcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCC
Confidence 3 2355553 3311 11111 1123334445555543 35677889999 8999999999999999999999999
Q ss_pred CHHHHHHHHH
Q 029661 171 DYAEAIKGIK 180 (190)
Q Consensus 171 dp~~~~~~l~ 180 (190)
|+.++++.+.
T Consensus 244 ~~~~a~~~l~ 253 (254)
T COG0134 244 DPEEALRELL 253 (254)
T ss_pred CHHHHHHHhh
Confidence 9999988763
No 76
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=98.88 E-value=5.2e-09 Score=86.08 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=100.3
Q ss_pred CCCHHHHHH-------hccCCCCcEEEEEeecChH----HHHHHHH-HcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE
Q 029661 10 TIGPLVVDA-------LRPVTDLPLDVHLMIVEPE----QRVPDFI-KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA 77 (190)
Q Consensus 10 ~~G~~~v~~-------i~~~~~~~i~~hlmv~dp~----~~i~~~~-~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~ 77 (190)
.+|++.++. +++. +.++.+|+|..|.. .|.+.++ ..|+|.+|+|+-.+ .+.+..+++.++++|..+
T Consensus 66 ~~G~~gi~~l~~~~~~~~~~-g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~~~G-~d~l~~~~~~~~~~~~~v 143 (261)
T TIGR02127 66 RFGSEGFKALEEVIAHARSL-GLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSPYLG-LDSLRPFLEYARANGAGI 143 (261)
T ss_pred hcCHHHHHHHHHHHHHHHHC-CCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECCcCC-HHHHHHHHHHHhhcCCEE
Confidence 468888844 4442 67899999999964 4677767 78999999999774 677888998888888877
Q ss_pred EEEEcCCCC-HHHHHHhh-----cccceEEEEee----ec---CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661 78 GVVLNPATS-LSAIECVL-----DVVDLVLIMSV----NP---GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 144 (190)
Q Consensus 78 g~~i~p~t~-~~~~~~~~-----~~~d~i~~m~v----~p---G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI 144 (190)
++.+.++.| -..++... +..+.|.-+.. .+ |..|-.......+.++++|+.+++ +. -+..||
T Consensus 144 ~VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~~~~~----~~-il~PGi 218 (261)
T TIGR02127 144 FVLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRLRIEMPT----AP-FLVPGF 218 (261)
T ss_pred EEEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHHHHhCCC----Ce-EEeCCc
Confidence 776655553 22333211 01122211111 11 222322211123456777776532 33 377777
Q ss_pred Ccc-----cHHH-HHHcCCC-EEEEcccccCCCCHHHHHH
Q 029661 145 GPK-----NAYK-VIEAGAN-ALVAGSAVFGAKDYAEAIK 177 (190)
Q Consensus 145 ~~e-----~~~~-~~~aGad-~~VvGsaI~~~~dp~~~~~ 177 (190)
+++ ..+. +-+.|+| .+++||+|+.+.||.++++
T Consensus 219 gaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~ 258 (261)
T TIGR02127 219 GAQGAEAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV 258 (261)
T ss_pred CCCCCCHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence 743 3333 2236888 8999999999999987754
No 77
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.8e-07 Score=72.36 Aligned_cols=161 Identities=24% Similarity=0.273 Sum_probs=108.7
Q ss_pred CHHHHHHhccCCCCcEEEEEeecCh---------HHHHHHHHHcCCCEEEEcccCC--CcchHHHHHHHHHHhCCcEEEE
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEP---------EQRVPDFIKAGADIVSVHCEQS--STIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp---------~~~i~~~~~~Gad~v~vh~e~~--~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
|.+-|+++|+..++|+.==.|=.-| .+-++.++++|++.|.+-+-.- +..+++++++.+|..|....-.
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD 133 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMAD 133 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEec
Confidence 6677888888888888664443212 3457889999999999864320 1226778888877777655555
Q ss_pred EcCCCCHHHHHHhhcccceEEEEeeecCCCCc--ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCC
Q 029661 81 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA 157 (190)
Q Consensus 81 i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq--~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGa 157 (190)
++ |.-|-+...-..+|+|- +.--|+.+. .-...-++.++++.+ .++.+-+-|.++ |+.++++.+.||
T Consensus 134 ~S--t~ee~l~a~~~G~D~IG--TTLsGYT~~~~~~~~pDf~lvk~l~~------~~~~vIAEGr~~tP~~Ak~a~~~Ga 203 (229)
T COG3010 134 CS--TFEEGLNAHKLGFDIIG--TTLSGYTGYTEKPTEPDFQLVKQLSD------AGCRVIAEGRYNTPEQAKKAIEIGA 203 (229)
T ss_pred cC--CHHHHHHHHHcCCcEEe--cccccccCCCCCCCCCcHHHHHHHHh------CCCeEEeeCCCCCHHHHHHHHHhCC
Confidence 54 22232322223588884 333455442 112233566666655 246788999999 899999999999
Q ss_pred CEEEEcccccCCCCHHHHHHHHHHhhcc
Q 029661 158 NALVAGSAVFGAKDYAEAIKGIKTSKRP 185 (190)
Q Consensus 158 d~~VvGsaI~~~~dp~~~~~~l~~~~~~ 185 (190)
+.+||||||++ |++-.+|+.+.++.
T Consensus 204 ~aVvVGsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 204 DAVVVGSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred eEEEECcccCC---HHHHHHHHHHHHhc
Confidence 99999999998 77888888877664
No 78
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.85 E-value=1.4e-08 Score=83.89 Aligned_cols=95 Identities=14% Similarity=0.265 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhCC-cEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661 62 HLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 140 (190)
Q Consensus 62 ~~~~~i~~i~~~g~-~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v 140 (190)
.+...++.+|+... ...+.++++|+.+..+.+...+|+|++..+.| +.++++.+++++. .++++++
T Consensus 166 ~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~------------e~l~~~v~~i~~~-~~i~i~a 232 (269)
T cd01568 166 GITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSP------------EELKEAVKLLKGL-PRVLLEA 232 (269)
T ss_pred CHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhccC-CCeEEEE
Confidence 45667888888643 44566666677665555556799998854433 3344444444332 4578999
Q ss_pred eCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 141 DGGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 141 dGGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.||||++|+.++.++|+|++++|+..+++
T Consensus 233 sGGIt~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 233 SGGITLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred ECCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 99999999999999999999997666654
No 79
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.83 E-value=1.3e-07 Score=76.66 Aligned_cols=147 Identities=17% Similarity=0.154 Sum_probs=99.8
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCC------
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPA------ 84 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~------ 84 (190)
..+.+++|.+.++.|+.+.==+.+.+ -++.+.++||+.+++.-++ ..+ +-.-+.++++|. ++.+++...
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~e-dv~~~l~~Ga~~viigt~~--~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~ 141 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLE-NAQEWLKRGASRVIVGTET--LPS-DDDEDRLAALGEQRLVLSLDFRGGQLLK 141 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHH-HHHHHHHcCCCeEEEccee--ccc-hHHHHHHHhcCCCCeEEEEeccCCeecc
Confidence 35677888776666666554444433 4667888999999998875 344 445666777776 666665532
Q ss_pred -----CCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCC
Q 029661 85 -----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN 158 (190)
Q Consensus 85 -----t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad 158 (190)
++.+.++.+.+.++.+++..+..-.+++... ++.++++.+.. +.++.+.|||+ .+++..+.+.|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~---~~~~~~i~~~~-----~ipvi~~GGi~s~edi~~l~~~G~~ 213 (233)
T cd04723 142 PTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPD---LELLERLAARA-----DIPVIAAGGVRSVEDLELLKKLGAS 213 (233)
T ss_pred ccCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcC---HHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 2455566665557888888776432333222 33444444432 46899999999 7999999999999
Q ss_pred EEEEcccccCCC
Q 029661 159 ALVAGSAVFGAK 170 (190)
Q Consensus 159 ~~VvGsaI~~~~ 170 (190)
.+++||+++...
T Consensus 214 ~vivGsal~~g~ 225 (233)
T cd04723 214 GALVASALHDGG 225 (233)
T ss_pred EEEEehHHHcCC
Confidence 999999998763
No 80
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=98.82 E-value=1.5e-07 Score=77.91 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=98.0
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHH-HHHHHcCCCEEEEcccCCC-------------cchHHHHHHHHHHh--CCc
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRV-PDFIKAGADIVSVHCEQSS-------------TIHLHRTLNQIKDL--GAK 76 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i-~~~~~~Gad~v~vh~e~~~-------------~~~~~~~i~~i~~~--g~~ 76 (190)
++|+.+|+. ++..+.+.-|+....+.+ +.+..+|....|-..-+.. .+++.+.++.+|+. +.+
T Consensus 111 ~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~k 190 (277)
T TIGR01334 111 KMVTLAKKISPMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPERK 190 (277)
T ss_pred HHHHHHHhcCCCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCCC
Confidence 567888864 788999988888666654 5578889888887643310 12688899999987 555
Q ss_pred EEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc
Q 029661 77 AGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA 155 (190)
Q Consensus 77 ~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a 155 (190)
+.+-+. +.+.+++.++. +|.|++ + .|.|+.+ +++.+++++.+.++.+++.||||++|+.++.+.
T Consensus 191 IeVEv~---tleea~ea~~~GaDiI~l---D------n~~~e~l---~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~ 255 (277)
T TIGR01334 191 ITVEAD---TIEQALTVLQASPDILQL---D------KFTPQQL---HHLHERLKFFDHIPTLAAAGGINPENIADYIEA 255 (277)
T ss_pred EEEECC---CHHHHHHHHHcCcCEEEE---C------CCCHHHH---HHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 555443 66777777664 899876 2 2444433 333444433345678999999999999999999
Q ss_pred CCCEEEEccc
Q 029661 156 GANALVAGSA 165 (190)
Q Consensus 156 Gad~~VvGsa 165 (190)
|+|++++|+-
T Consensus 256 GvD~is~gal 265 (277)
T TIGR01334 256 GIDLFITSAP 265 (277)
T ss_pred CCCEEEeCcc
Confidence 9999999985
No 81
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.77 E-value=3.8e-07 Score=75.83 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=100.0
Q ss_pred CCCcEEEEEeecChHHH---HHHHHHcCCCEEEEcccCCC----------cchHHHHHHHHHHh-CCcEEEEEcCCCCHH
Q 029661 23 TDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSS----------TIHLHRTLNQIKDL-GAKAGVVLNPATSLS 88 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~---i~~~~~~Gad~v~vh~e~~~----------~~~~~~~i~~i~~~-g~~~g~~i~p~t~~~ 88 (190)
++.|+.+.+.-.+++.+ ++.+.++|+|.+-++..+.. .+.+.++++++|+. ++.+.+=+++..+.+
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~ 176 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE 176 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence 57899999988888766 45577889999999865310 12356778888875 666777677776643
Q ss_pred HHHHhh----c-ccceEEEEeeec------------------CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC
Q 029661 89 AIECVL----D-VVDLVLIMSVNP------------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 145 (190)
Q Consensus 89 ~~~~~~----~-~~d~i~~m~v~p------------------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~ 145 (190)
...+++ + .+|.|.+-.... |.+|....+..++.++++++..+ .+++|...|||+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~---~~ipiia~GGI~ 253 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ---LDIPIIGVGGID 253 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC---CCCCEEEECCCC
Confidence 333332 2 278887643211 11222223445666777776553 147899999998
Q ss_pred -cccHHHHHHcCCCEEEEcccccCC-CCH
Q 029661 146 -PKNAYKVIEAGANALVAGSAVFGA-KDY 172 (190)
Q Consensus 146 -~e~~~~~~~aGad~~VvGsaI~~~-~dp 172 (190)
++++.+++.+|||.+-+||+++.. ++.
T Consensus 254 ~~~da~~~l~~GAd~V~vg~a~~~~GP~~ 282 (289)
T cd02810 254 SGEDVLEMLMAGASAVQVATALMWDGPDV 282 (289)
T ss_pred CHHHHHHHHHcCccHheEcHHHHhcCccH
Confidence 799999999999999999999875 443
No 82
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.76 E-value=2.3e-07 Score=75.27 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=99.1
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC--------
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-------- 84 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~-------- 84 (190)
.+.|++|.+.++.|+.+.==+.+.+ -++.+.++||+.+++.-++ .++++-+-+.++++|-++.+++...
T Consensus 65 ~~~I~~i~~~~~~pi~vGGGIrs~e-~v~~~l~~Ga~kvvigt~a--~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~g 141 (234)
T PRK13587 65 FDYIKSLRRLTTKDIEVGGGIRTKS-QIMDYFAAGINYCIVGTKG--IQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNG 141 (234)
T ss_pred HHHHHHHHhhcCCeEEEcCCcCCHH-HHHHHHHCCCCEEEECchH--hcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecC
Confidence 5688888876666666543344433 4677888999999998775 5567666666777776766655421
Q ss_pred ----C---CHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661 85 ----T---SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 155 (190)
Q Consensus 85 ----t---~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a 155 (190)
+ +.+.++++.+. +..++++.+......+... ++.++++++.. +.++.+.||++ ++.+..+.+.
T Consensus 142 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~---~~li~~l~~~~-----~ipvi~~GGi~s~edi~~l~~~ 213 (234)
T PRK13587 142 WEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPN---FELTGQLVKAT-----TIPVIASGGIRHQQDIQRLASL 213 (234)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccC---HHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHHc
Confidence 1 14455555443 5788888887533333333 33344444432 36899999999 6999999999
Q ss_pred CCCEEEEcccccC
Q 029661 156 GANALVAGSAVFG 168 (190)
Q Consensus 156 Gad~~VvGsaI~~ 168 (190)
|++.+++||++++
T Consensus 214 G~~~vivG~a~~~ 226 (234)
T PRK13587 214 NVHAAIIGKAAHQ 226 (234)
T ss_pred CCCEEEEhHHHHh
Confidence 9999999999987
No 83
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.74 E-value=1.4e-06 Score=72.81 Aligned_cols=152 Identities=19% Similarity=0.267 Sum_probs=102.0
Q ss_pred HHHHHhcc---CCCCcEEEEEeecChHHHH---HHHHHcCCCEEEEcccCC-----------CcchHHHHHHHHHHh-CC
Q 029661 14 LVVDALRP---VTDLPLDVHLMIVEPEQRV---PDFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDL-GA 75 (190)
Q Consensus 14 ~~v~~i~~---~~~~~i~~hlmv~dp~~~i---~~~~~~Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~-g~ 75 (190)
..++.+++ ..+.|+.+-+.-.+++.|. +.+.++|+|+|-+|.-+. +.+.+.++++++|+. ++
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 34555543 2578999999988887764 446788999999975431 112356788888887 77
Q ss_pred cEEEEEcCCCC-HHHHHHhhc--ccceEEEEeee-----------c-------CCCCcccchhhHHHHHHHHHHHhhcCC
Q 029661 76 KAGVVLNPATS-LSAIECVLD--VVDLVLIMSVN-----------P-------GFGGQSFIESQVKKISDLRRMCLEKGV 134 (190)
Q Consensus 76 ~~g~~i~p~t~-~~~~~~~~~--~~d~i~~m~v~-----------p-------G~~gq~~~~~~~~ki~~~~~~~~~~~~ 134 (190)
.+.+=++|+.+ ...+.+.+. .+|.|.+.... | |.+|....+..++.++++++..
T Consensus 156 Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~----- 230 (296)
T cd04740 156 PVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV----- 230 (296)
T ss_pred CEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-----
Confidence 77776777643 222233232 36776542111 1 2334333455566777776643
Q ss_pred CCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661 135 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 135 ~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
+++|...|||+ ++++.+++++|||.+-+||+++..+
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p 267 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDP 267 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcCh
Confidence 47899999996 8999999999999999999988743
No 84
>PRK08999 hypothetical protein; Provisional
Probab=98.72 E-value=5.3e-08 Score=81.84 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=83.3
Q ss_pred EEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeee
Q 029661 28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVN 106 (190)
Q Consensus 28 ~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~ 106 (190)
.+.|.++| +.+.+.+.|+|+|++.... . ..... +. ...+..+|++.+ ..+.+.+.. ..+||+.+-.+.
T Consensus 188 ~~~liind---~~~la~~~~~~GvHl~~~d--~-~~~~~-r~-~~~~~~ig~S~h---~~~~~~~a~~~~~dyi~~gpvf 256 (312)
T PRK08999 188 GAQLLLNG---DPELAEDLGADGVHLTSAQ--L-AALAA-RP-LPAGRWVAASCH---DAEELARAQRLGVDFAVLSPVQ 256 (312)
T ss_pred CCEEEEEC---cHHHHHhcCCCEEEcChhh--c-ChHhh-cc-CCCCCEEEEecC---CHHHHHHHHhcCCCEEEECCCc
Confidence 34556666 6778888999999998763 2 11111 11 123455666664 333333332 258999988887
Q ss_pred cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661 107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~ 167 (190)
|..+-....+..++.++++++.. +.++.+-||||++|+.++.++|+|++.+-|+|+
T Consensus 257 ~t~tk~~~~~~g~~~~~~~~~~~-----~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~~ 312 (312)
T PRK08999 257 PTASHPGAAPLGWEGFAALIAGV-----PLPVYALGGLGPGDLEEAREHGAQGIAGIRGLW 312 (312)
T ss_pred CCCCCCCCCCCCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence 65442222344567777776653 478999999999999999999999999999875
No 85
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.72 E-value=5.5e-07 Score=74.93 Aligned_cols=156 Identities=14% Similarity=0.197 Sum_probs=109.9
Q ss_pred HHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc----chHHHHHHHHHHhCCcEEEE---Ec-------
Q 029661 17 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST----IHLHRTLNQIKDLGAKAGVV---LN------- 82 (190)
Q Consensus 17 ~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~----~~~~~~i~~i~~~g~~~g~~---i~------- 82 (190)
+...+..++|+.+||==..-.+.++.+.+.|+++|-+=.-..+. +.-.++.+.++++|..+... +.
T Consensus 67 ~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~ 146 (281)
T PRK06806 67 VAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSE 146 (281)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcc
Confidence 33334467899999855434567888999999999884332111 12356667777788766432 21
Q ss_pred ----CCCCHHHHHHhh--cccceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC--CCCcccHHHH
Q 029661 83 ----PATSLSAIECVL--DVVDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKV 152 (190)
Q Consensus 83 ----p~t~~~~~~~~~--~~~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG--GI~~e~~~~~ 152 (190)
..|..+..+++. ..+||+.+ -++++.+. .-.+-.++.++++++.. ++++..-| ||+.++++++
T Consensus 147 ~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~--~~~~l~~~~L~~i~~~~-----~iPlV~hG~SGI~~e~~~~~ 219 (281)
T PRK06806 147 DIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYN--GDPNLRFDRLQEINDVV-----HIPLVLHGGSGISPEDFKKC 219 (281)
T ss_pred cccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCC--CCCccCHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHH
Confidence 025556666665 35899988 77776442 12344577888887764 47899999 9999999999
Q ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 153 IEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 153 ~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
+++|++.+-++|+|+. ++.++++++.+
T Consensus 220 i~~G~~kinv~T~i~~--a~~~a~~~~~~ 246 (281)
T PRK06806 220 IQHGIRKINVATATFN--SVITAVNNLVL 246 (281)
T ss_pred HHcCCcEEEEhHHHHH--HHHHHHHHHHH
Confidence 9999999999999998 57888877654
No 86
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.72 E-value=1.1e-06 Score=71.47 Aligned_cols=158 Identities=21% Similarity=0.209 Sum_probs=100.7
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEc--------
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLN-------- 82 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~-------- 82 (190)
..+.++++++..++|+.+-==+.+++. ++.+.+.|++.+.+--.. ..++..+.+.+++.+. ++.+.+.
T Consensus 59 ~~~~i~~i~~~~~~pv~~~GGI~s~~d-~~~~l~~G~~~v~ig~~~--~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~ 135 (243)
T cd04731 59 MLDVVERVAEEVFIPLTVGGGIRSLED-ARRLLRAGADKVSINSAA--VENPELIREIAKRFGSQCVVVSIDAKRRGDGG 135 (243)
T ss_pred cHHHHHHHHHhCCCCEEEeCCCCCHHH-HHHHHHcCCceEEECchh--hhChHHHHHHHHHcCCCCEEEEEEeeecCCCc
Confidence 356788888877778776545555554 455667899999886553 3455555555666653 3544443
Q ss_pred ------------CCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-ccc
Q 029661 83 ------------PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKN 148 (190)
Q Consensus 83 ------------p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~ 148 (190)
.....+..+.+.+ .+|.+++.++......+.+ .++.++++++.. +.++.+.|||+ ++.
T Consensus 136 ~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~~-----~~pvia~GGi~~~~d 207 (243)
T cd04731 136 YEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSSAV-----NIPVIASGGAGKPEH 207 (243)
T ss_pred eEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHhhC-----CCCEEEeCCCCCHHH
Confidence 1122333344433 3899998777653223333 344455555442 47899999997 799
Q ss_pred HHHHHHc-CCCEEEEcccccCCC-CHHHHHHHHH
Q 029661 149 AYKVIEA-GANALVAGSAVFGAK-DYAEAIKGIK 180 (190)
Q Consensus 149 ~~~~~~a-Gad~~VvGsaI~~~~-dp~~~~~~l~ 180 (190)
+..+.+. |+|.+++||+++... +..+..+.++
T Consensus 208 i~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 208 FVEAFEEGGADAALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred HHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHHh
Confidence 9998887 999999999998754 4444444443
No 87
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.72 E-value=6.3e-07 Score=72.46 Aligned_cols=58 Identities=22% Similarity=0.416 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCCCC-eEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhh
Q 029661 119 VKKISDLRRMCLEKGVNP-WIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 183 (190)
Q Consensus 119 ~~ki~~~~~~~~~~~~~~-~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~ 183 (190)
.+.++++++.. +. ++.+.|||+ +++++++.++|||.+|+||++.+ ||.+.++.+++.+
T Consensus 172 ~e~I~~v~~~~-----~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~~ 231 (232)
T PRK04169 172 PEMVKAVKKAL-----DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKAI 231 (232)
T ss_pred HHHHHHHHHhc-----CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhhc
Confidence 44566666653 24 789999999 68999999999999999999986 5667777776654
No 88
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.71 E-value=3.9e-07 Score=83.99 Aligned_cols=159 Identities=20% Similarity=0.199 Sum_probs=116.6
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 91 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~ 91 (190)
.++.++.+|+.+++|+...=.+-||... ..+..+|||.|.+.....+.+.+.++++.+++.|+.+-+-++....+ +
T Consensus 99 s~~~l~~vr~~v~~PvLrKDFIid~~QI-~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el---~ 174 (695)
T PRK13802 99 SLDDFDKVRAAVHIPVLRKDFIVTDYQI-WEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEI---E 174 (695)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHH-HHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHH---H
Confidence 5677888888888998875556676644 46788999999998775334579999999999999999988744444 3
Q ss_pred Hhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 92 CVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 92 ~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
..++ .++.|.+=..+. ..| ...++.-.++..++++ +..+..-+||+ ++++..+.++|+|.+.+|+++.++
T Consensus 175 ~a~~~ga~iiGINnRdL----~tf-~vd~~~t~~L~~~ip~---~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 175 RAIAAGAKVIGINARNL----KDL-KVDVNKYNELAADLPD---DVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHHhCCCCEEEEeCCCC----ccc-eeCHHHHHHHHhhCCC---CcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 4333 466664422221 112 1224555666777764 34455669998 799999999999999999999999
Q ss_pred CCHHHHHHHHHHh
Q 029661 170 KDYAEAIKGIKTS 182 (190)
Q Consensus 170 ~dp~~~~~~l~~~ 182 (190)
+||.+.+++|...
T Consensus 247 ~dp~~~~~~l~~~ 259 (695)
T PRK13802 247 DDHELAVERLVKA 259 (695)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999998653
No 89
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.70 E-value=3.8e-07 Score=74.91 Aligned_cols=130 Identities=22% Similarity=0.274 Sum_probs=86.3
Q ss_pred HHHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCcEEEEEc------CCCCHHHHHH----hh-cccceEE
Q 029661 39 RVPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLN------PATSLSAIEC----VL-DVVDLVL 101 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~~g~~i~------p~t~~~~~~~----~~-~~~d~i~ 101 (190)
.++.+.+.|++.|-+..-.++ .+.+.++.+.++++|+.+.+.+. +..+.+.+.+ .. ..+|||-
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyik 174 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVK 174 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEe
Confidence 378899999998888542111 12345555566678887665332 2222222222 11 2379986
Q ss_pred EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-------cccHHHHHHcCCCEEEEcccccCCCCHHH
Q 029661 102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-------PKNAYKVIEAGANALVAGSAVFGAKDYAE 174 (190)
Q Consensus 102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-------~e~~~~~~~aGad~~VvGsaI~~~~dp~~ 174 (190)
. ++.+ .++.++++.+.. ..++.+.|||+ .++++++.++||+++.+||+||+++||.+
T Consensus 175 t-----~~~~------~~~~l~~~~~~~-----~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~ 238 (258)
T TIGR01949 175 T-----PYTG------DIDSFRDVVKGC-----PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVG 238 (258)
T ss_pred c-----cCCC------CHHHHHHHHHhC-----CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHH
Confidence 4 1221 244445444422 36788889999 66888999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 029661 175 AIKGIKTSKR 184 (190)
Q Consensus 175 ~~~~l~~~~~ 184 (190)
+++.|++.+.
T Consensus 239 ~~~~l~~~i~ 248 (258)
T TIGR01949 239 ITKAVCKIVH 248 (258)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 90
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.66 E-value=1.9e-06 Score=70.46 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=100.1
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEc--C----
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLN--P---- 83 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~--p---- 83 (190)
...+.++++++..++|+.+.==+.+++ -++.+.+.|++.+.+..+. ..++..+-+..+.+| -++.+++. .
T Consensus 61 ~~~~~i~~i~~~~~ipv~~~GGi~s~~-~~~~~l~~Ga~~Viigt~~--l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~ 137 (253)
T PRK02083 61 TMLDVVERVAEQVFIPLTVGGGIRSVE-DARRLLRAGADKVSINSAA--VANPELISEAADRFGSQCIVVAIDAKRDPEP 137 (253)
T ss_pred chHHHHHHHHHhCCCCEEeeCCCCCHH-HHHHHHHcCCCEEEEChhH--hhCcHHHHHHHHHcCCCCEEEEEEeccCCCC
Confidence 446688888876666766633334444 3455666999999998654 345555555555554 23334432 1
Q ss_pred --------------C-CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661 84 --------------A-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P 146 (190)
Q Consensus 84 --------------~-t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~ 146 (190)
. ++.+..+++.+. ++.+++.++......|.+ -++.++++++.. +.++.+.||++ .
T Consensus 138 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~---d~~~i~~~~~~~-----~ipvia~GGv~s~ 209 (253)
T PRK02083 138 GRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGY---DLELTRAVSDAV-----NVPVIASGGAGNL 209 (253)
T ss_pred CCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCc---CHHHHHHHHhhC-----CCCEEEECCCCCH
Confidence 1 223444444333 788888666542233333 255566666543 46899999999 6
Q ss_pred ccHHHHHHc-CCCEEEEcccccCC-CCHHHHHHHHHH
Q 029661 147 KNAYKVIEA-GANALVAGSAVFGA-KDYAEAIKGIKT 181 (190)
Q Consensus 147 e~~~~~~~a-Gad~~VvGsaI~~~-~dp~~~~~~l~~ 181 (190)
+.+.++.+. |+|.+++||++... -++.+..+.+++
T Consensus 210 ~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 210 EHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred HHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 899888874 99999999999864 466666565553
No 91
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.65 E-value=9.4e-07 Score=71.15 Aligned_cols=147 Identities=17% Similarity=0.175 Sum_probs=96.5
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC--------
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP-------- 83 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p-------- 83 (190)
..+.++++++.++.|+.+.=-+.+.+ -++.+.+.||+.|.+-... .+++..+.+.+++.+-++.+.+..
T Consensus 62 ~~~~i~~i~~~~~~pv~~~GGI~~~e-d~~~~~~~Ga~~vilg~~~--l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~ 138 (233)
T PRK00748 62 NLELIEAIVKAVDIPVQVGGGIRSLE-TVEALLDAGVSRVIIGTAA--VKNPELVKEACKKFPGKIVVGLDARDGKVATD 138 (233)
T ss_pred cHHHHHHHHHHCCCCEEEcCCcCCHH-HHHHHHHcCCCEEEECchH--HhCHHHHHHHHHHhCCCceeeeeccCCEEEEc
Confidence 35778888887777777644455544 3567788999999887653 334444444455544444444331
Q ss_pred -------CCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 84 -------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 84 -------~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
.++.+..+.+.+ .++.++++++......+ . ..++.++++++.. +.++.+.|||+ ++++.++.+
T Consensus 139 g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~--G-~d~~~i~~l~~~~-----~ipvia~GGi~~~~di~~~~~ 210 (233)
T PRK00748 139 GWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLS--G-PNVEATRELAAAV-----PIPVIASGGVSSLDDIKALKG 210 (233)
T ss_pred cCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcC--C-CCHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHH
Confidence 122444555444 37888888777532222 2 2356666666653 36788999999 699999999
Q ss_pred cC-CCEEEEcccccCC
Q 029661 155 AG-ANALVAGSAVFGA 169 (190)
Q Consensus 155 aG-ad~~VvGsaI~~~ 169 (190)
.| +|.+++||+++..
T Consensus 211 ~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 211 LGAVEGVIVGRALYEG 226 (233)
T ss_pred cCCccEEEEEHHHHcC
Confidence 98 9999999998764
No 92
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.65 E-value=1.4e-06 Score=69.19 Aligned_cols=137 Identities=18% Similarity=0.098 Sum_probs=95.1
Q ss_pred CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
..+.++++++. ++..+-+-. |.+++. .+.+.++||+.+.-+.. -.++++.++++|+....-+ .||-|..
T Consensus 46 a~~~i~~l~~~~~~~~vGAGT-Vl~~~~-a~~a~~aGA~FivsP~~------~~~v~~~~~~~~i~~iPG~--~TptEi~ 115 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGT-VLNPEQ-LRQAVDAGAQFIVSPGL------TPELAKHAQDHGIPIIPGV--ATPSEIM 115 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEe-CCCHHH-HHHHHHcCCCEEECCCC------CHHHHHHHHHcCCcEECCC--CCHHHHH
Confidence 45667788763 556666654 345553 67889999999966544 2368999999988654422 3565555
Q ss_pred HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
.-+-..+|.|=+ .|+.. +. -.+-++.++.-++ +.++...|||+++|++++.++|+..+.+||.+|+.+
T Consensus 116 ~A~~~Ga~~vKl---FPA~~---~G--G~~yikal~~plp----~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 116 LALELGITALKL---FPAEV---SG--GVKMLKALAGPFP----QVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred HHHHCCCCEEEE---CCchh---cC--CHHHHHHHhccCC----CCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCch
Confidence 555456787754 56421 11 0223566666664 478899999999999999999999999999999753
No 93
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.64 E-value=1.2e-06 Score=72.42 Aligned_cols=129 Identities=22% Similarity=0.281 Sum_probs=84.3
Q ss_pred HHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCcEEEEE-------cCCCCHHHHHH---hh--cccceEE
Q 029661 40 VPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVL-------NPATSLSAIEC---VL--DVVDLVL 101 (190)
Q Consensus 40 i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~~g~~i-------~p~t~~~~~~~---~~--~~~d~i~ 101 (190)
++.+.+.|||.+-+..-.++ .+.+.++.+.++++|+.+.+.. ......+.+.. .. ..+|||-
T Consensus 99 ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vK 178 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVK 178 (267)
T ss_pred HHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEe
Confidence 77899999998877633211 1245566677777888776642 11112122111 11 1378883
Q ss_pred EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc-------HHHHHHcCCCEEEEcccccCCCCHHH
Q 029661 102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-------AYKVIEAGANALVAGSAVFGAKDYAE 174 (190)
Q Consensus 102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~-------~~~~~~aGad~~VvGsaI~~~~dp~~ 174 (190)
+++.+ ..+.++++.+. ...++.+.|||+.+| +.+++++||+++.+||+||+++||.+
T Consensus 179 -----t~~~~------~~~~l~~~~~~-----~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~ 242 (267)
T PRK07226 179 -----TNYTG------DPESFREVVEG-----CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEA 242 (267)
T ss_pred -----eCCCC------CHHHHHHHHHh-----CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHH
Confidence 22222 12333433332 236899999999876 77778999999999999999999999
Q ss_pred HHHHHHHhhc
Q 029661 175 AIKGIKTSKR 184 (190)
Q Consensus 175 ~~~~l~~~~~ 184 (190)
.++.+++.+.
T Consensus 243 ~~~~l~~~v~ 252 (267)
T PRK07226 243 ITRAISAVVH 252 (267)
T ss_pred HHHHHHHHHh
Confidence 9999998664
No 94
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=98.63 E-value=1.9e-07 Score=82.71 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=97.0
Q ss_pred CCCcEEEEEeecChH---HHHHHHH-HcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHH-HHHH-----
Q 029661 23 TDLPLDVHLMIVEPE---QRVPDFI-KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-AIEC----- 92 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~---~~i~~~~-~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~-~~~~----- 92 (190)
+++++.+|.|-.|.. .|.+.++ ..|+|.||+|+-.+ .+++..+++. .|+.+.+.+.++.|-. .++.
T Consensus 87 ~~~~vI~DaKrgDI~T~~~yA~a~f~~~~aDAiTv~pymG-~Dsl~pfl~~---~~kgvfvL~~tSNpga~~~Q~~~~~g 162 (477)
T PRK05500 87 PDIPIILDAKHGDLNTSTIFAKTIFEQWQVDAVTLSPYAG-QDHVAPFLVY---PDKGVFILCHTSNPGAIALQEYPTPE 162 (477)
T ss_pred cCCeEEEEecccChHHHHHHHHHHHhhcCCCEEEECCccC-ccchHHHHhc---CCCcEEEEEeCCCcCHHHHhhcccCC
Confidence 578999999999863 4666666 58999999999875 6778888865 6777777665555532 3331
Q ss_pred --hh-cccceEEEEeeecCCCCcccchhh-HHHHHHHHHHHhhcCCCCeEEEeCCCCcc--cHHHHHHcCCC------EE
Q 029661 93 --VL-DVVDLVLIMSVNPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGAN------AL 160 (190)
Q Consensus 93 --~~-~~~d~i~~m~v~pG~~gq~~~~~~-~~ki~~~~~~~~~~~~~~~i~vdGGI~~e--~~~~~~~aGad------~~ 160 (190)
+. ..++.+.-.+ .++.-|-. .+.+ .+.++++|+..++ ..| ...|+..+ ++.+++++|+| .+
T Consensus 163 ~~ly~~v~~~~~~~~-~~~~~g~V-vGAT~p~~~~~iR~~~p~----~~i-L~PGiGAQGg~~~~~~~~g~~~~~~g~li 235 (477)
T PRK05500 163 NPFYLQVVKEAKTWG-TPEQLGLE-VGTTNPEVLAKIRQIAPE----RLI-LLRSIWAEKGNLNQILTAGLNSNGDGLLI 235 (477)
T ss_pred CcHHHHHHHHHHHhC-CCCceEEE-ECCCChHHHHHHHHhCCC----CEE-EccccccCCCCHHHHHHhhcccCcCceEE
Confidence 11 1111110000 01100000 1112 3456667776553 222 45555543 48899999998 89
Q ss_pred EEcccccCCCCHHHHHHHHHHhhc
Q 029661 161 VAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
.+|++|..++||.++++++++.+.
T Consensus 236 ~v~R~il~a~~~~~~a~~l~~~i~ 259 (477)
T PRK05500 236 PVPQDLLGAANLKEQVKSLREEIN 259 (477)
T ss_pred EeCHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 95
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.63 E-value=9e-07 Score=74.94 Aligned_cols=158 Identities=21% Similarity=0.243 Sum_probs=110.7
Q ss_pred CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
+++.++++|+. .++|+.+.=.+-||.... .+..+|||.|.+-....+.+++.++++.+++.|+.+-+-++....+
T Consensus 168 s~e~L~~vr~~~v~lPvLrKDFIID~yQI~-eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~El--- 243 (338)
T PLN02460 168 SFENLEAIRNAGVKCPLLCKEFIVDAWQIY-YARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREM--- 243 (338)
T ss_pred CHHHHHHHHHcCCCCCEeeccccCCHHHHH-HHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHH---
Confidence 56788999987 889998866677777554 5777899999987665334579999999999999999988754444
Q ss_pred HHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHH-----HHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661 91 ECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRR-----MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 162 (190)
Q Consensus 91 ~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~-----~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv 162 (190)
+..+. .++.|.+=..+. ..|. ..++.-.++.. +++. .+..+..-.||+ ++++..+.++|+|.|-+
T Consensus 244 erAl~~~ga~iIGINNRdL----~Tf~-vDl~~t~~L~~~~~~~~i~~--~~~~~VsESGI~t~~Dv~~l~~~GadAvLV 316 (338)
T PLN02460 244 DRVLGIEGVELIGINNRSL----ETFE-VDISNTKKLLEGERGEQIRE--KGIIVVGESGLFTPDDVAYVQNAGVKAVLV 316 (338)
T ss_pred HHHHhcCCCCEEEEeCCCC----Ccce-ECHHHHHHHhhhccccccCC--CCeEEEECCCCCCHHHHHHHHHCCCCEEEE
Confidence 44343 356664322221 1121 11222233333 2211 123455669998 79999999999999999
Q ss_pred cccccCCCCHHHHHHHHH
Q 029661 163 GSAVFGAKDYAEAIKGIK 180 (190)
Q Consensus 163 GsaI~~~~dp~~~~~~l~ 180 (190)
|+++.+++||.+++++|.
T Consensus 317 GEsLMr~~dp~~~l~~L~ 334 (338)
T PLN02460 317 GESLVKQDDPGKGIAGLF 334 (338)
T ss_pred CHHHhCCCCHHHHHHHHh
Confidence 999999999999998874
No 96
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=98.63 E-value=4.5e-07 Score=73.04 Aligned_cols=47 Identities=36% Similarity=0.557 Sum_probs=37.4
Q ss_pred CCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 135 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 135 ~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
+.++-+.|||+ .|++.++.++|||.+|+|.++.+..+.+++++.+++
T Consensus 182 ~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~a 229 (230)
T PF01884_consen 182 DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIKA 229 (230)
T ss_dssp SSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHHH
T ss_pred CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHhh
Confidence 57899999999 799999999999999999999987666666666543
No 97
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.62 E-value=5.6e-06 Score=66.88 Aligned_cols=159 Identities=17% Similarity=0.221 Sum_probs=108.5
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC-------
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA------- 84 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~------- 84 (190)
..+.+++|.+.++.|+.+===+ +-.+.++.+.++|++.|++.--+ .++++.+.+.++++|-++.+++...
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGI-Rs~~~v~~ll~~G~~rViiGt~a--v~~p~~v~~~~~~~g~rivv~lD~r~g~vav~ 139 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGI-RSLEDVEALLDAGVARVIIGTAA--VKNPDLVKELCEEYGDRIVVALDARDGKVAVS 139 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCc-CCHHHHHHHHHCCCCEEEEecce--ecCHHHHHHHHHHcCCcEEEEEEccCCccccc
Confidence 4567888877666665552112 23457888999999999998775 6789999999999998887776522
Q ss_pred --------CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 85 --------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 85 --------t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
++.+..+++.+. +..+++-. ...+|-.-.++ ++..+++.+.. +.++.+.|||+ .+.++.+.+
T Consensus 140 GW~e~s~~~~~~l~~~~~~~g~~~ii~Td--I~~DGtl~G~n-~~l~~~l~~~~-----~ipviaSGGv~s~~Di~~l~~ 211 (241)
T COG0106 140 GWQEDSGVELEELAKRLEEVGLAHILYTD--ISRDGTLSGPN-VDLVKELAEAV-----DIPVIASGGVSSLDDIKALKE 211 (241)
T ss_pred cccccccCCHHHHHHHHHhcCCCeEEEEe--cccccccCCCC-HHHHHHHHHHh-----CcCEEEecCcCCHHHHHHHHh
Confidence 223444555443 44555432 33333222222 33445555544 46889999999 699999999
Q ss_pred c-CCCEEEEcccccCCC-CHHHHHHHHHH
Q 029661 155 A-GANALVAGSAVFGAK-DYAEAIKGIKT 181 (190)
Q Consensus 155 a-Gad~~VvGsaI~~~~-dp~~~~~~l~~ 181 (190)
. |+..+|+|||++... ++.++++.+++
T Consensus 212 ~~G~~GvIvG~ALy~g~~~l~ea~~~~~~ 240 (241)
T COG0106 212 LSGVEGVIVGRALYEGKFTLEEALACVRN 240 (241)
T ss_pred cCCCcEEEEehHHhcCCCCHHHHHHHHhc
Confidence 9 899999999999764 67888776653
No 98
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.62 E-value=2.1e-06 Score=70.43 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=100.7
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEc----C----
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLN----P---- 83 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~----p---- 83 (190)
.+.+++|++.++.|+.+.==+.+++. ++.+.++||+.+.+.-+. .+++..+-+..+.+| -++.+++. +
T Consensus 63 ~~~i~~i~~~~~~pv~~~GGi~s~~d-~~~~~~~Ga~~vivgt~~--~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~ 139 (254)
T TIGR00735 63 IDVVERTAETVFIPLTVGGGIKSIED-VDKLLRAGADKVSINTAA--VKNPELIYELADRFGSQCIVVAIDAKRVYVNSY 139 (254)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHH-HHHHHHcCCCEEEEChhH--hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCC
Confidence 46788887777777777444445443 455677899999997664 455665566666676 45555554 1
Q ss_pred ---------------CCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661 84 ---------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P 146 (190)
Q Consensus 84 ---------------~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~ 146 (190)
..+.+..+.+.+ .+|.|++.+++.....+.+ -++-++++++.. +.++.+.|||+ +
T Consensus 140 ~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~---~~~~~~~i~~~~-----~ipvia~GGi~s~ 211 (254)
T TIGR00735 140 CWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGY---DLELTKAVSEAV-----KIPVIASGGAGKP 211 (254)
T ss_pred ccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCC---CHHHHHHHHHhC-----CCCEEEeCCCCCH
Confidence 112333344433 3788888766553222222 244455555543 46899999999 7
Q ss_pred ccHHHHHHcC-CCEEEEcccccCCC-CHHHHHHHHH
Q 029661 147 KNAYKVIEAG-ANALVAGSAVFGAK-DYAEAIKGIK 180 (190)
Q Consensus 147 e~~~~~~~aG-ad~~VvGsaI~~~~-dp~~~~~~l~ 180 (190)
+.+.++.+.| +|.+++|++++... +..+..+.++
T Consensus 212 ~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 212 EHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 9999999988 99999999998653 5554444444
No 99
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.61 E-value=2.5e-06 Score=68.82 Aligned_cols=145 Identities=18% Similarity=0.170 Sum_probs=92.5
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCc-EEEEEc--C----
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK-AGVVLN--P---- 83 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~-~g~~i~--p---- 83 (190)
...+.++++++.++.|+.+.=-+.+.++ ++.+.+.|++.+.+-... .+++..+.+..++++.+ +.+.+. .
T Consensus 61 ~n~~~~~~i~~~~~~pv~~~ggi~~~~d-~~~~~~~G~~~vilg~~~--l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~ 137 (232)
T TIGR03572 61 PLFELISNLAEECFMPLTVGGGIRSLED-AKKLLSLGADKVSINTAA--LENPDLIEEAARRFGSQCVVVSIDVKKELDG 137 (232)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCCHHH-HHHHHHcCCCEEEEChhH--hcCHHHHHHHHHHcCCceEEEEEEeccCCCC
Confidence 3456788888777777766333444343 445778899999987653 45565555556666544 333322 2
Q ss_pred ---------------CCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661 84 ---------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P 146 (190)
Q Consensus 84 ---------------~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~ 146 (190)
..+.+..+.+.+ .+|.+.+.++.+....+.. -++.++++++.. +.++.+.|||+ +
T Consensus 138 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~---~~~~~~~i~~~~-----~ipvia~GGi~s~ 209 (232)
T TIGR03572 138 SDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGY---DLELIKTVSDAV-----SIPVIALGGAGSL 209 (232)
T ss_pred CcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCC---CHHHHHHHHhhC-----CCCEEEECCCCCH
Confidence 112344444433 3799998887653222222 255566665543 46899999999 6
Q ss_pred ccHHH-HHHcCCCEEEEcccc
Q 029661 147 KNAYK-VIEAGANALVAGSAV 166 (190)
Q Consensus 147 e~~~~-~~~aGad~~VvGsaI 166 (190)
+.+.. +.+.|||.+++||++
T Consensus 210 ~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 210 DDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHHHHHcCCCEEEEehhh
Confidence 88888 888999999999986
No 100
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.60 E-value=1.9e-06 Score=70.10 Aligned_cols=155 Identities=13% Similarity=0.163 Sum_probs=101.2
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC---------
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP--------- 83 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p--------- 83 (190)
.+.+++|.+..+.|+.+.==+.+.+ -++.+.++||+.+.+..+. ..+++-+.+.+++.+-++.+.+..
T Consensus 64 ~~~i~~i~~~~~~pv~vgGGirs~e-dv~~~l~~Ga~kvviGs~~--l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~G 140 (241)
T PRK14024 64 RELLAEVVGKLDVKVELSGGIRDDE-SLEAALATGCARVNIGTAA--LENPEWCARVIAEHGDRVAVGLDVRGHTLAARG 140 (241)
T ss_pred HHHHHHHHHHcCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchH--hCCHHHHHHHHHHhhhhEEEEEEEeccEeccCC
Confidence 4688888876666666543344433 4677888999999987764 456666666666666555443221
Q ss_pred -----CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH--
Q 029661 84 -----ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-- 154 (190)
Q Consensus 84 -----~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~-- 154 (190)
.++.+.++.+.+. ++.++++++..-...+. + .++.++++++.. +.++.+.|||+ .+.+.++.+
T Consensus 141 w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G--~-d~~~i~~i~~~~-----~ipviasGGi~s~~D~~~l~~~~ 212 (241)
T PRK14024 141 WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG--P-NLELLREVCART-----DAPVVASGGVSSLDDLRALAELV 212 (241)
T ss_pred eeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC--C-CHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHhhhc
Confidence 1123444444333 78999988875322222 2 466666666543 46899999999 688888753
Q ss_pred -cCCCEEEEcccccCCC-CHHHHHHH
Q 029661 155 -AGANALVAGSAVFGAK-DYAEAIKG 178 (190)
Q Consensus 155 -aGad~~VvGsaI~~~~-dp~~~~~~ 178 (190)
.|+|.+++||+++... +++++.+.
T Consensus 213 ~~GvdgV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 213 PLGVEGAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred cCCccEEEEeHHHHcCCCCHHHHHHH
Confidence 5999999999987654 55555443
No 101
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.55 E-value=2.1e-06 Score=69.01 Aligned_cols=47 Identities=21% Similarity=0.411 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 119 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 119 ~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.+.++++|+..+ +.++.++|||+ +++++.+.++|||.+|+||.+++.
T Consensus 167 ~e~i~~v~~~~~----~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 167 PELVAEVKKVLD----KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred HHHHHHHHHHcC----CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 444666666542 36899999999 799999999999999999999984
No 102
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.54 E-value=6.8e-06 Score=68.85 Aligned_cols=151 Identities=18% Similarity=0.243 Sum_probs=100.1
Q ss_pred HHHHhcc---CCCCcEEEEEeecChHHHHH---HHHHcC-CCEEEEcc-----cC-C-----CcchHHHHHHHHHHh-CC
Q 029661 15 VVDALRP---VTDLPLDVHLMIVEPEQRVP---DFIKAG-ADIVSVHC-----EQ-S-----STIHLHRTLNQIKDL-GA 75 (190)
Q Consensus 15 ~v~~i~~---~~~~~i~~hlmv~dp~~~i~---~~~~~G-ad~v~vh~-----e~-~-----~~~~~~~~i~~i~~~-g~ 75 (190)
+++.+++ ..+.|+.+.+.-.+++.|.+ .+.++| +|+|-++. .. + ..+.+.++++++|+. .+
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~ 158 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKV 158 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCC
Confidence 4555543 24689999998889987754 467788 99998832 11 0 123467888888886 66
Q ss_pred cEEEEEcCCCC-HHHHHHhhc--ccceEEEEeeecC------------------CCCcccchhhHHHHHHHHHHHhhcCC
Q 029661 76 KAGVVLNPATS-LSAIECVLD--VVDLVLIMSVNPG------------------FGGQSFIESQVKKISDLRRMCLEKGV 134 (190)
Q Consensus 76 ~~g~~i~p~t~-~~~~~~~~~--~~d~i~~m~v~pG------------------~~gq~~~~~~~~ki~~~~~~~~~~~~ 134 (190)
.+.+=++|+.+ ...+.+.+. .+|.|.+..+.+| .+|....|..++.++++++..
T Consensus 159 pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~----- 233 (301)
T PRK07259 159 PVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV----- 233 (301)
T ss_pred CEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-----
Confidence 66766776532 223333332 3687765332222 223233344567777776643
Q ss_pred CCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661 135 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 135 ~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
+++|...|||+ ++.+.+++.+|||.+-+||+++..+
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P 270 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDP 270 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCc
Confidence 47899999996 8999999999999999999988743
No 103
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.52 E-value=4.7e-06 Score=68.53 Aligned_cols=145 Identities=17% Similarity=0.171 Sum_probs=93.4
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcC--------
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNP-------- 83 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p-------- 83 (190)
.+.+++|.+.++.|+.+.==+.++++ ++.+.++|++.+.+-.+. .+++..+-+.+++++. ++.+++..
T Consensus 63 ~~~i~~i~~~~~~pv~~gGGi~s~~d-~~~l~~~G~~~vvigs~~--~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~ 139 (258)
T PRK01033 63 YELIENLASECFMPLCYGGGIKTLEQ-AKKIFSLGVEKVSINTAA--LEDPDLITEAAERFGSQSVVVSIDVKKNLGGKF 139 (258)
T ss_pred HHHHHHHHHhCCCCEEECCCCCCHHH-HHHHHHCCCCEEEEChHH--hcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcE
Confidence 57788888777777655433444443 455668899999997654 4455555555555552 34333331
Q ss_pred ------------CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccH
Q 029661 84 ------------ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNA 149 (190)
Q Consensus 84 ------------~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~ 149 (190)
..+.+.++.+.+. ++.++++++.-....+.+ .++.++++++.. +.++.+.|||+ .+++
T Consensus 140 ~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~---d~~~i~~~~~~~-----~ipvIasGGv~s~eD~ 211 (258)
T PRK01033 140 DVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY---DLELLKSFRNAL-----KIPLIALGGAGSLDDI 211 (258)
T ss_pred EEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC---CHHHHHHHHhhC-----CCCEEEeCCCCCHHHH
Confidence 1233444444333 788988877642222222 455566666542 47899999999 6999
Q ss_pred HHHH-HcCCCEEEEcccccC
Q 029661 150 YKVI-EAGANALVAGSAVFG 168 (190)
Q Consensus 150 ~~~~-~aGad~~VvGsaI~~ 168 (190)
.++. +.|+|.+++||++.-
T Consensus 212 ~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 212 VEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHCCCCEEEEcceeee
Confidence 9988 799999999999743
No 104
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.52 E-value=3.8e-06 Score=73.03 Aligned_cols=128 Identities=23% Similarity=0.373 Sum_probs=84.6
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE-cCCCCHHHHHHhhc-ccceEEEEeeecCC--CCcc
Q 029661 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQS 113 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t~~~~~~~~~~-~~d~i~~m~v~pG~--~gq~ 113 (190)
+.++.+.++|+|.|.+-.-.+......+.++.+|+.--..-+.. +..| .+..+.+++ .+|.|.+ +..||. +++.
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T-~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~ 233 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVT-KEAALDLISVGADCLKV-GIGPGSICTTRI 233 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCC-HHHHHHHHHcCCCEEEE-CCCCCcCCccee
Confidence 56888999999999974332223457778888887532222323 3333 444555554 4899875 776763 1221
Q ss_pred ---cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 114 ---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 114 ---~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
+....+.-+..+++...+ .+.+|.+||||+ ++.+.++..+|||.+.+||++...
T Consensus 234 ~~g~g~p~ltai~~v~~~~~~--~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt 291 (404)
T PRK06843 234 VAGVGVPQITAICDVYEVCKN--TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT 291 (404)
T ss_pred ecCCCCChHHHHHHHHHHHhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee
Confidence 111234455555555543 347899999998 799999999999999999999874
No 105
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=98.52 E-value=2.3e-06 Score=71.20 Aligned_cols=140 Identities=11% Similarity=0.186 Sum_probs=93.6
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHH-HHHHHHcCCCEEEEcccC-------------CCcchHHHHHHHHHHh--CCc
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDL--GAK 76 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~-i~~~~~~Gad~v~vh~e~-------------~~~~~~~~~i~~i~~~--g~~ 76 (190)
.+|+.+++. ++..+.+.=|+....+. .+.+..+|....|-..-+ ++.+.+.+.++.+|+. ..+
T Consensus 112 ~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~k 191 (284)
T PRK06096 112 QMLALLRERYPDGNIACTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEKK 191 (284)
T ss_pred HHHHHHHhhCCCcEEEecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCC
Confidence 567777753 77788887777744454 456788887766642211 0112567888888886 344
Q ss_pred EEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc
Q 029661 77 AGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA 155 (190)
Q Consensus 77 ~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a 155 (190)
+.+... +++.+++.++. +|.|++ + .|.|+.+ +++.+++++.+.++.+++.||||++|++++.+.
T Consensus 192 --IeVEv~-tleqa~ea~~agaDiI~L-------D--n~~~e~l---~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~t 256 (284)
T PRK06096 192 --IVVEAD-TPKEAIAALRAQPDVLQL-------D--KFSPQQA---TEIAQIAPSLAPHCTLSLAGGINLNTLKNYADC 256 (284)
T ss_pred --EEEECC-CHHHHHHHHHcCCCEEEE-------C--CCCHHHH---HHHHHHhhccCCCeEEEEECCCCHHHHHHHHhc
Confidence 444433 56666776654 899886 2 3555554 444444443345678999999999999999999
Q ss_pred CCCEEEEcccccCC
Q 029661 156 GANALVAGSAVFGA 169 (190)
Q Consensus 156 Gad~~VvGsaI~~~ 169 (190)
|+|++++|+- +.+
T Consensus 257 GvD~Is~gal-~~a 269 (284)
T PRK06096 257 GIRLFITSAP-YYA 269 (284)
T ss_pred CCCEEEECcc-ccC
Confidence 9999987765 554
No 106
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.51 E-value=5e-06 Score=65.88 Aligned_cols=134 Identities=17% Similarity=0.136 Sum_probs=94.2
Q ss_pred CHHHHHHhcc-CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 12 GPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 12 G~~~v~~i~~-~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
..+.|+++++ +++..+-+-. |.|++ -.+.+.++||+.+.-+.. -.++++.++++|+-...-+. ||-|..
T Consensus 42 a~~~I~~l~~~~~~~~vGAGT-Vl~~e-~a~~ai~aGA~FivSP~~------~~~vi~~a~~~~i~~iPG~~--TptEi~ 111 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGT-ILNAK-QFEDAAKAGSRFIVSPGT------TQELLAAANDSDVPLLPGAA--TPSEVM 111 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEe-CcCHH-HHHHHHHcCCCEEECCCC------CHHHHHHHHHcCCCEeCCCC--CHHHHH
Confidence 4566777775 4566666655 34555 457889999999987764 23578999998887544332 555555
Q ss_pred HHhhcccceEEEEeeecCC--CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC
Q 029661 91 ECVLDVVDLVLIMSVNPGF--GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 91 ~~~~~~~d~i~~m~v~pG~--~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
.-+-...|.|=+ .|+. +| .+-|+.++..++ +.++...|||+++|+.++.++|+...+.||.+++
T Consensus 112 ~A~~~Ga~~vK~---FPa~~~GG-------~~yikal~~plp----~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~ 177 (201)
T PRK06015 112 ALREEGYTVLKF---FPAEQAGG-------AAFLKALSSPLA----GTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAP 177 (201)
T ss_pred HHHHCCCCEEEE---CCchhhCC-------HHHHHHHHhhCC----CCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCC
Confidence 555445777754 5642 13 233566677665 4788999999999999999999999999999986
Q ss_pred C
Q 029661 169 A 169 (190)
Q Consensus 169 ~ 169 (190)
.
T Consensus 178 ~ 178 (201)
T PRK06015 178 K 178 (201)
T ss_pred c
Confidence 4
No 107
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.51 E-value=2.6e-06 Score=67.30 Aligned_cols=137 Identities=22% Similarity=0.210 Sum_probs=91.5
Q ss_pred CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
..+.|+.+++. ++..+-+-. |.+++ -++.+.++||+.+.-+.. -.++++.++++|+.+.--+. ||-|..
T Consensus 46 a~~~I~~l~~~~p~~~vGAGT-V~~~e-~a~~a~~aGA~FivSP~~------~~~v~~~~~~~~i~~iPG~~--TptEi~ 115 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGT-VLTAE-QAEAAIAAGAQFIVSPGF------DPEVIEYAREYGIPYIPGVM--TPTEIM 115 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES---SHH-HHHHHHHHT-SEEEESS--------HHHHHHHHHHTSEEEEEES--SHHHHH
T ss_pred HHHHHHHHHHHCCCCeeEEEe-ccCHH-HHHHHHHcCCCEEECCCC------CHHHHHHHHHcCCcccCCcC--CHHHHH
Confidence 46778877764 777777755 34444 467889999999998865 23689999999988766554 454444
Q ss_pred HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
.-+-...|.|=+ .|... +. -.+-++.++..++ ++++...|||+++|++++.++|+..+.+||.+|+.+
T Consensus 116 ~A~~~G~~~vK~---FPA~~---~G--G~~~ik~l~~p~p----~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 116 QALEAGADIVKL---FPAGA---LG--GPSYIKALRGPFP----DLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp HHHHTT-SEEEE---TTTTT---TT--HHHHHHHHHTTTT----T-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred HHHHCCCCEEEE---ecchh---cC--cHHHHHHHhccCC----CCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCHH
Confidence 444335777754 56421 11 1233566666554 478899999999999999999999999999999854
No 108
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.51 E-value=3.5e-06 Score=67.56 Aligned_cols=143 Identities=14% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCCcEEEEEeecChHHHHH---HHHHcCCCEEEEcccCC---------------CcchHHHHHHHHHHh-CCcEEEEEcC
Q 029661 23 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP 83 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~~---------------~~~~~~~~i~~i~~~-g~~~g~~i~p 83 (190)
.+.|+.+.+...+|+.|.+ .+.++|+|.|-+|.-+. ..+-+.++++++++. +..+.+-++.
T Consensus 53 ~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 53 EERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 5689999999999987644 46778999999985320 122355777788764 3344444443
Q ss_pred C--CC--H-HHHHHhhc-ccceEEEEeeecCCCCc-ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661 84 A--TS--L-SAIECVLD-VVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 155 (190)
Q Consensus 84 ~--t~--~-~~~~~~~~-~~d~i~~m~v~pG~~gq-~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a 155 (190)
. .+ . +.++.+.+ .+|+|.+.+. ...| ...+..++.++++++. .+++|.++|||+ ++++.++.+.
T Consensus 133 ~~~~~~~~~~~~~~l~~~Gvd~i~v~~~---~~~~~~~~~~~~~~~~~i~~~-----~~ipvi~~Ggi~~~~d~~~~l~~ 204 (231)
T cd02801 133 GWDDEEETLELAKALEDAGASALTVHGR---TREQRYSGPADWDYIAEIKEA-----VSIPVIANGDIFSLEDALRCLEQ 204 (231)
T ss_pred ccCCchHHHHHHHHHHHhCCCEEEECCC---CHHHcCCCCCCHHHHHHHHhC-----CCCeEEEeCCCCCHHHHHHHHHh
Confidence 2 22 2 22222222 2678765333 2222 1223346666666653 357899999996 8999999998
Q ss_pred -CCCEEEEcccccCCCCHH
Q 029661 156 -GANALVAGSAVFGAKDYA 173 (190)
Q Consensus 156 -Gad~~VvGsaI~~~~dp~ 173 (190)
|||.+.+|++++..++.-
T Consensus 205 ~gad~V~igr~~l~~P~~~ 223 (231)
T cd02801 205 TGVDGVMIGRGALGNPWLF 223 (231)
T ss_pred cCCCEEEEcHHhHhCCHHH
Confidence 899999999999866443
No 109
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=98.50 E-value=9.6e-07 Score=73.30 Aligned_cols=155 Identities=15% Similarity=0.086 Sum_probs=97.9
Q ss_pred CCCHH-------HHHHhccCCCCcEEEEEeecCh----HHHHHHHH--HcCCCEEEEcccCCCcchHHHHHHHHHHhCCc
Q 029661 10 TIGPL-------VVDALRPVTDLPLDVHLMIVEP----EQRVPDFI--KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 76 (190)
Q Consensus 10 ~~G~~-------~v~~i~~~~~~~i~~hlmv~dp----~~~i~~~~--~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~ 76 (190)
.+|++ +++++|+. ++++.+|+|..|. ..|.+.++ +.|+|.+|+|+-.+ .+.+..+++.++++|+.
T Consensus 66 ~~G~~G~~~l~~~i~~l~~~-g~~VilD~K~~DI~nTv~~ya~a~~~~~~g~DavTVhp~~G-~d~l~~~~~~~~~~~k~ 143 (278)
T PRK00125 66 AHGAEGLAQLERTIAYLREA-GVLVIADAKRGDIGSTAEAYAKAAFESPLEADAVTVSPYMG-FDSLEPYLEYAEEHGKG 143 (278)
T ss_pred hcCchhhhHHHHHHHHHHHC-CCcEEEEeecCChHHHHHHHHHHHhcCccCCcEEEECCcCC-HHHHHHHHHHHHhcCCE
Confidence 45777 78888874 7889999999996 35777778 69999999998764 67788899988888887
Q ss_pred EEEEEcCCCCH-HHHHHhhc-----ccceEEE---Eee-----ecCCCCcccchhh-HHHHHHHHHHHhhcCCCCeEEEe
Q 029661 77 AGVVLNPATSL-SAIECVLD-----VVDLVLI---MSV-----NPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVD 141 (190)
Q Consensus 77 ~g~~i~p~t~~-~~~~~~~~-----~~d~i~~---m~v-----~pG~~gq~~~~~~-~~ki~~~~~~~~~~~~~~~i~vd 141 (190)
+++.+-++.|- ..++.+.. ..+.|.- +.. .+|..|-. ...+ .+.++++|+..++ ++ -+.
T Consensus 144 vfVlvlTSnp~s~~lq~~~~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~V-VgaT~p~e~~~iR~~~~~----~~-iL~ 217 (278)
T PRK00125 144 VFVLCRTSNPGGSDLQFLRTADGRPLYQHVADLAAALNNLGNCGYGSIGLV-VGATFPPELAAVRKILGG----MP-LLI 217 (278)
T ss_pred EEEEEeCCCCCHHHHHhhhccCCCcHHHHHHHHHHHHhccccCCCCCCEEE-ECCCCHHHHHHHHHhCCC----Ce-EEe
Confidence 77666555554 34433210 1111110 011 14444411 1222 4556777776542 33 488
Q ss_pred CCCCcc--cHHHHHHcCCC----EEE-EcccccCCCCH
Q 029661 142 GGVGPK--NAYKVIEAGAN----ALV-AGSAVFGAKDY 172 (190)
Q Consensus 142 GGI~~e--~~~~~~~aGad----~~V-vGsaI~~~~dp 172 (190)
.||.++ ++.+++++|++ ++| ++++|..+.+.
T Consensus 218 PGigaQGg~~~~~~~~~~~~~~~~l~~~SR~il~a~~~ 255 (278)
T PRK00125 218 PGIGAQGGDAEATVRAGGAAGNGGIPNSSRAILYAGPG 255 (278)
T ss_pred CCcCCCCcCHHHHHHHhhhcCCCEEeecCHHHHcCCCc
Confidence 999964 57777777665 333 34577766444
No 110
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=98.49 E-value=4.9e-06 Score=66.63 Aligned_cols=130 Identities=22% Similarity=0.302 Sum_probs=81.3
Q ss_pred EEEEeecChH------HHHHHHHHcCCCEEEEcccCCC-cchHHHHHHHHH-HhCCcEEEEEcCCCCHHHHHHhhcccce
Q 029661 28 DVHLMIVEPE------QRVPDFIKAGADIVSVHCEQSS-TIHLHRTLNQIK-DLGAKAGVVLNPATSLSAIECVLDVVDL 99 (190)
Q Consensus 28 ~~hlmv~dp~------~~i~~~~~~Gad~v~vh~e~~~-~~~~~~~i~~i~-~~g~~~g~~i~p~t~~~~~~~~~~~~d~ 99 (190)
-.|+-.-||. +..+.++++|.|.|.+....+- .+...++++++| +.+..+.+.-+..+.++ +.+|.
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is------~~aDa 89 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGIS------PYADA 89 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccC------ccCCe
Confidence 3566556664 4677899999999999876532 245788999999 56666655543222221 13344
Q ss_pred EEEEee-----------------------------------ecCCC-C----ccc-------------------------
Q 029661 100 VLIMSV-----------------------------------NPGFG-G----QSF------------------------- 114 (190)
Q Consensus 100 i~~m~v-----------------------------------~pG~~-g----q~~------------------------- 114 (190)
+++|++ +||.. + -+.
T Consensus 90 vff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~Y 169 (240)
T COG1646 90 VFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVY 169 (240)
T ss_pred EEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEE
Confidence 443333 33321 0 010
Q ss_pred --------chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661 115 --------IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 115 --------~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
.|...+.+++..+. .++-+.|||+ +|+++++.++|||.+|+|+.+.++.
T Consensus 170 lEagsga~~Pv~~e~v~~v~~~-------~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 170 LEAGSGAGDPVPVEMVSRVLSD-------TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred EEecCCCCCCcCHHHHHHhhcc-------ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 12222333322221 2677999999 7999999999999999999998854
No 111
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.48 E-value=1.1e-06 Score=73.16 Aligned_cols=94 Identities=12% Similarity=0.234 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661 62 HLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 137 (190)
Q Consensus 62 ~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~ 137 (190)
.+.+.++.+|+. +.++++-+. ..+.+.+.++ .+|+|++ . .|.++.+++ +..++++.+.+.+
T Consensus 181 ~i~~av~~~r~~~~~~~~I~VEv~---tleea~eA~~~GaD~I~L---D------n~~~e~l~~---av~~~~~~~~~i~ 245 (288)
T PRK07428 181 GIGEAITRIRQRIPYPLTIEVETE---TLEQVQEALEYGADIIML---D------NMPVDLMQQ---AVQLIRQQNPRVK 245 (288)
T ss_pred CHHHHHHHHHHhCCCCCEEEEECC---CHHHHHHHHHcCCCEEEE---C------CCCHHHHHH---HHHHHHhcCCCeE
Confidence 477888888885 355555543 3444445444 5899976 1 344444444 3333333345678
Q ss_pred EEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 138 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 138 i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
+++.||||++|++++.+.|+|++++||.+++++
T Consensus 246 leAsGGIt~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 246 IEASGNITLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 999999999999999999999999999998765
No 112
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.47 E-value=2.8e-06 Score=75.01 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=111.5
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 91 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~ 91 (190)
+.+.++.+|+.+++|+...=.+-||... .++..+|||.|.+-....+.+.+.++++.+++.|+.+-+-++....+++..
T Consensus 98 s~~~l~~vr~~v~~PvLrKDFiid~~QI-~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al 176 (454)
T PRK09427 98 SFDFLPIVRAIVTQPILCKDFIIDPYQI-YLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAI 176 (454)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHH-HHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHH
Confidence 5677888888888898875556676644 467889999999986653334699999999999999999887544444332
Q ss_pred HhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCC
Q 029661 92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 92 ~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
.. .++.|.+=..+. ..|. -.++.-.++..++++ +..+..-+||+ ++++..+.. |+|.+.+|+++.+++
T Consensus 177 ~~--~a~iiGiNnRdL----~t~~-vd~~~~~~l~~~ip~---~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~ 245 (454)
T PRK09427 177 AL--GAKVIGINNRNL----RDLS-IDLNRTRELAPLIPA---DVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAED 245 (454)
T ss_pred hC--CCCEEEEeCCCC----ccce-ECHHHHHHHHhhCCC---CcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCC
Confidence 22 456654322221 1121 124444555666653 34455679998 789988765 799999999999999
Q ss_pred CHHHHHHHHHH
Q 029661 171 DYAEAIKGIKT 181 (190)
Q Consensus 171 dp~~~~~~l~~ 181 (190)
||.+.+++|..
T Consensus 246 d~~~~~~~L~~ 256 (454)
T PRK09427 246 DLELAVRKLIL 256 (454)
T ss_pred CHHHHHHHHhc
Confidence 99999999854
No 113
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.44 E-value=1.6e-05 Score=67.73 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=96.0
Q ss_pred HhccCCCCcEEEEEeecChHHH---HHHHHHcCCCEEEEcccCCCc----------chHHHHHHHHHHh-CCcEEEEEcC
Q 029661 18 ALRPVTDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSST----------IHLHRTLNQIKDL-GAKAGVVLNP 83 (190)
Q Consensus 18 ~i~~~~~~~i~~hlmv~dp~~~---i~~~~~~Gad~v~vh~e~~~~----------~~~~~~i~~i~~~-g~~~g~~i~p 83 (190)
.+++..+.|+.+.+.-.+++.+ .+.+.++|+|++.+|..+.+. +...++++.+++. .+.+.+=+.|
T Consensus 95 ~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p 174 (334)
T PRK07565 95 RAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP 174 (334)
T ss_pred HHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC
Confidence 3444457899999988888654 455678899999997532000 1245677778775 5555666777
Q ss_pred CC-CHHHHHHhhc--ccceEEEEeeec---------------CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC
Q 029661 84 AT-SLSAIECVLD--VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 145 (190)
Q Consensus 84 ~t-~~~~~~~~~~--~~d~i~~m~v~p---------------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~ 145 (190)
.. ....+.+.+. .+|.|.+....+ |.+|....|..++-++++++.. +++|...|||+
T Consensus 175 ~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~-----~ipIig~GGI~ 249 (334)
T PRK07565 175 YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV-----GADLAATTGVH 249 (334)
T ss_pred CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc-----CCCEEEECCCC
Confidence 63 3444444333 378876543322 1223333345555555555432 47888999999
Q ss_pred -cccHHHHHHcCCCEEEEcccccCC
Q 029661 146 -PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 146 -~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.+.+.+++.+|||.+=+||+++..
T Consensus 250 s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 250 DAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred CHHHHHHHHHcCCCceeeehHHhhh
Confidence 799999999999999999998873
No 114
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.43 E-value=8.5e-06 Score=68.22 Aligned_cols=160 Identities=10% Similarity=0.172 Sum_probs=104.1
Q ss_pred HHHHhccCC--CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcc----hHHHHHHHHHHhCCcEEEE---E----
Q 029661 15 VVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI----HLHRTLNQIKDLGAKAGVV---L---- 81 (190)
Q Consensus 15 ~v~~i~~~~--~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~----~~~~~i~~i~~~g~~~g~~---i---- 81 (190)
.++.+.+.. ++|+.+||==. ..+.++.+.+.|+++|-+=....+.+ .-.++.+.++++|..+-.- +
T Consensus 66 ~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~e 144 (293)
T PRK07315 66 LIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEE 144 (293)
T ss_pred HHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcC
Confidence 344454434 67999998555 34478889999999998854322211 1244555566666544111 1
Q ss_pred ------cCCCCHHHHHHhhc-ccceEEEE--eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC--CCcccHH
Q 029661 82 ------NPATSLSAIECVLD-VVDLVLIM--SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAY 150 (190)
Q Consensus 82 ------~p~t~~~~~~~~~~-~~d~i~~m--~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG--I~~e~~~ 150 (190)
+.-|..+...++.. .+|++.+- ++|--+.+. ..+-.+++|+++++... ++++..-|| |+.++++
T Consensus 145 d~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~-~k~l~~e~L~~i~~~~~----~iPlVlhGGSGi~~e~~~ 219 (293)
T PRK07315 145 DGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPEN-WEGLDLDHLEKLTEAVP----GFPIVLHGGSGIPDDQIQ 219 (293)
T ss_pred ccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCC-CCcCCHHHHHHHHHhcc----CCCEEEECCCCCCHHHHH
Confidence 11156666666553 48998765 564112121 11345777888777652 368899999 9999999
Q ss_pred HHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661 151 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182 (190)
Q Consensus 151 ~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~ 182 (190)
++++.|++.+-++|.|.. ++.++++++.+.
T Consensus 220 ~~i~~Gi~KiNv~T~i~~--~~~~~~~~~~~~ 249 (293)
T PRK07315 220 EAIKLGVAKVNVNTECQI--AFANATRKFARD 249 (293)
T ss_pred HHHHcCCCEEEEccHHHH--HHHHHHHHHHHh
Confidence 999999999999999986 677777776543
No 115
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.43 E-value=1.5e-05 Score=68.69 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=83.6
Q ss_pred hHHHHHHHHHcCCCEEEEcccC-----CCcc-hHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecC
Q 029661 36 PEQRVPDFIKAGADIVSVHCEQ-----SSTI-HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG 108 (190)
Q Consensus 36 p~~~i~~~~~~Gad~v~vh~e~-----~~~~-~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG 108 (190)
..++++.+.++|+|.+++|.-. .... ++..+.+.+++.++.+.. ..-.+.+..+++++ .+|.|.+ +..||
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa--G~V~t~e~A~~l~~aGAD~V~V-G~G~G 219 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV--GGCVTYTTALHLMRTGAAGVLV-GIGPG 219 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE--eCCCCHHHHHHHHHcCCCEEEE-CCCCC
Confidence 4567888999999999999621 0011 467788888887766533 22334455555554 4899865 66666
Q ss_pred C--CCc-cc---chhhHHHHHHHHH----HHhhc-CCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 109 F--GGQ-SF---IESQVKKISDLRR----MCLEK-GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 109 ~--~gq-~~---~~~~~~ki~~~~~----~~~~~-~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
. ..+ .. .| .+..+.+..+ +..+. +.+++|.+||||+ ...+.+.+.+|||.+.+||.+...
T Consensus 220 s~~~t~~~~g~g~p-~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t 291 (368)
T PRK08649 220 AACTSRGVLGIGVP-MATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARA 291 (368)
T ss_pred cCCCCcccCCCCcC-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhccc
Confidence 2 111 11 12 2333333322 22221 2357899999998 689999999999999999998764
No 116
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.41 E-value=1.4e-05 Score=65.17 Aligned_cols=154 Identities=8% Similarity=0.022 Sum_probs=97.0
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC-------
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA------- 84 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~------- 84 (190)
..+.+++|.+.+..|+.+.==+.+.+ -++.+.+.||+.|++--++ .++++-+-+.++++|-++.+++...
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e-~~~~~l~~Ga~~vvigT~a--~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~ 138 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDS-SLRAALTGGRARVNGGTAA--LENPWWAAAVIRYGGDIVAVGLDVLEDGEWHT 138 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHH-HHHHHHHcCCCEEEECchh--hCCHHHHHHHHHHccccEEEEEEEecCCceEE
Confidence 35678888776555555433333333 4667888999999997664 4566666666677766654443321
Q ss_pred --------CC---HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHH
Q 029661 85 --------TS---LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK 151 (190)
Q Consensus 85 --------t~---~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~ 151 (190)
|. .+.++++.+. +..++++.+.--...+-+. ++.++++++.. +.++.+.||++ .+++..
T Consensus 139 v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d---~~l~~~l~~~~-----~~pviasGGv~s~eDl~~ 210 (243)
T TIGR01919 139 LGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPN---ELLLEVVAART-----DAIVAASGGSSLLDDLRA 210 (243)
T ss_pred EECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcC---HHHHHHHHhhC-----CCCEEEECCcCCHHHHHH
Confidence 22 2344444333 5778888776422222232 44455555543 36899999999 588887
Q ss_pred HH---HcCCCEEEEcccccCCC-CHHHHH
Q 029661 152 VI---EAGANALVAGSAVFGAK-DYAEAI 176 (190)
Q Consensus 152 ~~---~aGad~~VvGsaI~~~~-dp~~~~ 176 (190)
+. +.|++.+++|++++... +.++++
T Consensus 211 l~~l~~~Gv~gvivg~Al~~g~i~~~~~~ 239 (243)
T TIGR01919 211 IKYLDEGGVSVAIGGKLLYARFFTLEAAL 239 (243)
T ss_pred HHhhccCCeeEEEEhHHHHcCCCCHHHHH
Confidence 65 45999999999999754 555543
No 117
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.41 E-value=1.6e-05 Score=68.57 Aligned_cols=132 Identities=19% Similarity=0.240 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHcCCCEEEEcccC------CCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeec
Q 029661 35 EPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP 107 (190)
Q Consensus 35 dp~~~i~~~~~~Gad~v~vh~e~------~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~p 107 (190)
+..++.+.+.++|+|.+++|.-. ....++..+.+.+++.++.+.. ..-.+.+...++++ .+|.|+. +..-
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~--G~V~t~e~A~~~~~aGaDgV~~-G~gg 219 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA--GGVNDYTTALHLMRTGAAGVIV-GPGG 219 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE--eCCCCHHHHHHHHHcCCCEEEE-CCCC
Confidence 45678889999999999999421 0122466777777878776643 22344555565554 5888872 2111
Q ss_pred CCCCc-cc---ch--hhHHHHHHH-HHHHhhcC-CCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 108 GFGGQ-SF---IE--SQVKKISDL-RRMCLEKG-VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 108 G~~gq-~~---~~--~~~~ki~~~-~~~~~~~~-~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
+.... .. .| ..+..+... +++.++.+ ..++|-+||||+ .+.+.+++.+|||.+.+||++..+
T Consensus 220 ~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a 290 (369)
T TIGR01304 220 ANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA 290 (369)
T ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence 11111 11 12 122233333 23343333 247899999999 689999999999999999998864
No 118
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=1.6e-05 Score=64.73 Aligned_cols=140 Identities=19% Similarity=0.285 Sum_probs=90.6
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC--------HHHHH----Hhhcccce--
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS--------LSAIE----CVLDVVDL-- 99 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--------~~~~~----~~~~~~d~-- 99 (190)
.+++.++|++++.+ |.|- .+++.+..-+++++++|+.+.+.+. +|. .+.+. ..+...+-
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvG-Etl~~reag~t~~v~~~Ql~~~l~~l~~~~ 159 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVG-ETLEEREAGKTLEVLKRQLAAALAALSPEA 159 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcC-CCHHHHhccChHHHHHHHHHHHHhhcCccc
Confidence 67899999999999 3321 1244567888999999999888776 233 12222 22222221
Q ss_pred EEEEeeec----CCCCcccchhhHH-HHHHHHHHHhhcC---CCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccCCC
Q 029661 100 VLIMSVNP----GFGGQSFIESQVK-KISDLRRMCLEKG---VNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGAK 170 (190)
Q Consensus 100 i~~m~v~p----G~~gq~~~~~~~~-ki~~~~~~~~~~~---~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~~~ 170 (190)
=.+...+| |++ .+-.++..+ ..+-+|....+.. .+++|..+|||+++|+.++ .+.++|++-+||+..+++
T Consensus 160 ~~vIAYEPvWAIGTG-~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~ 238 (251)
T COG0149 160 NIVIAYEPVWAIGTG-KSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKAD 238 (251)
T ss_pred CeEEEECCHHHhcCC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecch
Confidence 12234566 643 332222222 2334444443321 4689999999999888855 678999999999999999
Q ss_pred CHHHHHHHHHH
Q 029661 171 DYAEAIKGIKT 181 (190)
Q Consensus 171 dp~~~~~~l~~ 181 (190)
|+.+.++.+.+
T Consensus 239 ~f~~ii~~~~~ 249 (251)
T COG0149 239 DFLAILEALAK 249 (251)
T ss_pred hHHHHHHHHhh
Confidence 99988887754
No 119
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.38 E-value=3.7e-06 Score=69.66 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHhC---CcEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCC
Q 029661 61 IHLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 136 (190)
Q Consensus 61 ~~~~~~i~~i~~~g---~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~ 136 (190)
+++.+.++.+|+.- .++.+-+. ..+.+.+.++. +|.|++ +. |.++. ++++.++++....+.
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VEv~---tleea~~A~~~GaDiI~L-------Dn--~~~e~---l~~~v~~~~~~~~~~ 230 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIECE---SLEEAKNAMNAGADIVMC-------DN--MSVEE---IKEVVAYRNANYPHV 230 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEeC---CHHHHHHHHHcCCCEEEE-------CC--CCHHH---HHHHHHHhhccCCCe
Confidence 35778888888852 44444443 55556665554 898763 22 33444 444444444333457
Q ss_pred eEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 137 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 137 ~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
.+.+.||||++|++++.+.|+|++++|+.+.+++
T Consensus 231 ~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 231 LLEASGNITLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 8999999999999999999999999999998764
No 120
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.38 E-value=3e-06 Score=68.49 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=93.6
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEc--CC------
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLN--PA------ 84 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~--p~------ 84 (190)
+.+++|.+.+..|+.+.==+.+.+ -++.+.++||+.|++.-++ .++++-+-+.++++|. ++.+++. ..
T Consensus 63 ~~i~~i~~~~~~~i~vgGGIrs~e-d~~~ll~~Ga~~Vvigt~~--~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~ 139 (229)
T PF00977_consen 63 ELIKEIAKETGIPIQVGGGIRSIE-DAERLLDAGADRVVIGTEA--LEDPELLEELAERYGSQRIVVSLDARDGYKVATN 139 (229)
T ss_dssp HHHHHHHHHSSSEEEEESSE-SHH-HHHHHHHTT-SEEEESHHH--HHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEET
T ss_pred HHHHHHHhcCCccEEEeCccCcHH-HHHHHHHhCCCEEEeChHH--hhchhHHHHHHHHcCcccEEEEEEeeeceEEEec
Confidence 567777776667776655555544 4567889999999999775 4455556666677776 5544432 22
Q ss_pred --------CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 85 --------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 85 --------t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
++.+.++++.+. +..++++.+.--..++-+. ++.++++++.. +.++.+.|||+ .+++..+.+
T Consensus 140 gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d---~~~~~~l~~~~-----~~~viasGGv~~~~Dl~~l~~ 211 (229)
T PF00977_consen 140 GWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPD---LELLKQLAEAV-----NIPVIASGGVRSLEDLRELKK 211 (229)
T ss_dssp TTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS-----HHHHHHHHHHH-----SSEEEEESS--SHHHHHHHHH
T ss_pred CccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCC---HHHHHHHHHHc-----CCCEEEecCCCCHHHHHHHHH
Confidence 123444444433 6778888876422333332 35566666654 36899999996 799999999
Q ss_pred cCCCEEEEcccccCC
Q 029661 155 AGANALVAGSAVFGA 169 (190)
Q Consensus 155 aGad~~VvGsaI~~~ 169 (190)
.|++.+++|++++..
T Consensus 212 ~G~~gvivg~al~~g 226 (229)
T PF00977_consen 212 AGIDGVIVGSALHEG 226 (229)
T ss_dssp TTECEEEESHHHHTT
T ss_pred CCCcEEEEehHhhCC
Confidence 999999999999753
No 121
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.38 E-value=4.5e-06 Score=69.29 Aligned_cols=91 Identities=12% Similarity=0.200 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661 62 HLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 137 (190)
Q Consensus 62 ~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~ 137 (190)
.+.+.++.+|+. ++++|+.++ ..+.+++.. ..+|||.+ . .+.+ +.++++++..+ ...+
T Consensus 173 ~~~~~v~~aR~~~~~~~~Igvsv~---tleea~~A~~~gaDyI~l---D------~~~~---e~l~~~~~~~~---~~i~ 234 (277)
T PRK08072 173 SITKAVTSVREKLGHMVKIEVETE---TEEQVREAVAAGADIIMF---D------NRTP---DEIREFVKLVP---SAIV 234 (277)
T ss_pred CHHHHHHHHHHhCCCCCEEEEEeC---CHHHHHHHHHcCCCEEEE---C------CCCH---HHHHHHHHhcC---CCce
Confidence 477788888886 456777775 344444444 45899976 1 2333 44555555543 2467
Q ss_pred EEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 138 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 138 i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
+++.||||++|++++.++|+|++.+|+-..+++
T Consensus 235 i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~sa~ 267 (277)
T PRK08072 235 TEASGGITLENLPAYGGTGVDYISLGFLTHSVK 267 (277)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence 889999999999999999999999998766553
No 122
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.38 E-value=3.1e-05 Score=65.79 Aligned_cols=143 Identities=20% Similarity=0.221 Sum_probs=94.7
Q ss_pred CCCCcEEEEEeecChHHH---HHHHHHcCCCEEEEcccCCC-c---------chHHHHHHHHHHh-CCcEEEEEcCC-CC
Q 029661 22 VTDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSS-T---------IHLHRTLNQIKDL-GAKAGVVLNPA-TS 86 (190)
Q Consensus 22 ~~~~~i~~hlmv~dp~~~---i~~~~~~Gad~v~vh~e~~~-~---------~~~~~~i~~i~~~-g~~~g~~i~p~-t~ 86 (190)
..+.|+.+.++-.+++.| .+.+.++|+|++-+|..+.+ . +.+.++++.+++. .+.+.+=+.|. +.
T Consensus 97 ~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~ 176 (325)
T cd04739 97 AVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSA 176 (325)
T ss_pred ccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccC
Confidence 357899999877778654 55567889999999865310 0 1235677888775 55556667776 33
Q ss_pred HHHHHHhhc--ccceEEEEeee---------------cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-ccc
Q 029661 87 LSAIECVLD--VVDLVLIMSVN---------------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKN 148 (190)
Q Consensus 87 ~~~~~~~~~--~~d~i~~m~v~---------------pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~ 148 (190)
+..+.+.+. .+|.|.+.... .|.+|....+..++-++++++.. +++|...|||+ .+.
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~-----~ipIig~GGI~s~~D 251 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV-----KASLAASGGVHDAED 251 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc-----CCCEEEECCCCCHHH
Confidence 433333332 37777654322 12234344455566566655432 47899999999 789
Q ss_pred HHHHHHcCCCEEEEcccccCC
Q 029661 149 AYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsaI~~~ 169 (190)
+.+++.+|||.+=+||+++..
T Consensus 252 a~e~l~aGA~~Vqv~ta~~~~ 272 (325)
T cd04739 252 VVKYLLAGADVVMTTSALLRH 272 (325)
T ss_pred HHHHHHcCCCeeEEehhhhhc
Confidence 999999999999999998863
No 123
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.37 E-value=1.9e-05 Score=65.81 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=98.9
Q ss_pred HHHHhccCCC-CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcc-h---HHHHHHHHHHhCCcEEEEEcC------
Q 029661 15 VVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI-H---LHRTLNQIKDLGAKAGVVLNP------ 83 (190)
Q Consensus 15 ~v~~i~~~~~-~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~-~---~~~~i~~i~~~g~~~g~~i~p------ 83 (190)
.++.+.+..+ +|+.+||==....+.++.+.+.|+++|.+=....+.+ + ..++.+.++++|..+-.-+..
T Consensus 64 ~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed 143 (282)
T TIGR01859 64 MVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIED 143 (282)
T ss_pred HHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccc
Confidence 3444444456 8999998323345678889999999988743321111 1 345566667777765432221
Q ss_pred --------CCCHHHHHHhhc--ccceEE--EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC--CCCcccH
Q 029661 84 --------ATSLSAIECVLD--VVDLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNA 149 (190)
Q Consensus 84 --------~t~~~~~~~~~~--~~d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG--GI~~e~~ 149 (190)
-|+.+...++.. .+|++. +-++++-+.+. .+-.+++|+++++.. ++++..-| ||+.+++
T Consensus 144 ~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~--~~l~~e~L~~i~~~~-----~iPlv~hGgSGi~~e~i 216 (282)
T TIGR01859 144 GVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGE--PGLDFERLKEIKELT-----NIPLVLHGASGIPEEQI 216 (282)
T ss_pred cccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCC--CccCHHHHHHHHHHh-----CCCEEEECCCCCCHHHH
Confidence 356666777665 589987 34455433331 233477777777765 37899999 9999999
Q ss_pred HHHHHcCCCEEEEcccccC
Q 029661 150 YKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 150 ~~~~~aGad~~VvGsaI~~ 168 (190)
++++++|++.+-++|.+..
T Consensus 217 ~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 217 KKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred HHHHHcCCCEEEECcHHHH
Confidence 9999999999999998864
No 124
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.37 E-value=2.2e-05 Score=64.03 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=96.0
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC---------
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP--------- 83 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p--------- 83 (190)
.+.+++|.+.+ .|+.+.==+.+. +-++.+.++||+.|++--++ .++++ .++.+.++|-++.+++..
T Consensus 63 ~~~i~~i~~~~-~~v~vGGGIrs~-e~~~~~l~~Ga~rvvigT~a--~~~p~-~l~~~~~~~~~ivvslD~k~g~v~~~g 137 (241)
T PRK14114 63 LPVLEKLSEFA-EHIQIGGGIRSL-DYAEKLRKLGYRRQIVSSKV--LEDPS-FLKFLKEIDVEPVFSLDTRGGKVAFKG 137 (241)
T ss_pred HHHHHHHHhhc-CcEEEecCCCCH-HHHHHHHHCCCCEEEECchh--hCCHH-HHHHHHHhCCCEEEEEEccCCEEeeCC
Confidence 56778887654 344332222222 34667888999999998765 44554 455556677666554432
Q ss_pred ---C---CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661 84 ---A---TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 155 (190)
Q Consensus 84 ---~---t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a 155 (190)
. ++.+.++++.+. +..++++++.--...+-+. ++.++++++.. +.++.+.||++ .+++..+.+.
T Consensus 138 w~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d---~el~~~l~~~~-----~~pviasGGv~s~~Dl~~l~~~ 209 (241)
T PRK14114 138 WLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHD---FSLTRKIAIEA-----EVKVFAAGGISSENSLKTAQRV 209 (241)
T ss_pred CeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcC---HHHHHHHHHHC-----CCCEEEECCCCCHHHHHHHHhc
Confidence 1 224445555443 6788888776422223233 44455555543 36899999999 6999999886
Q ss_pred -----C-CCEEEEcccccCCC-CHHHHHHH
Q 029661 156 -----G-ANALVAGSAVFGAK-DYAEAIKG 178 (190)
Q Consensus 156 -----G-ad~~VvGsaI~~~~-dp~~~~~~ 178 (190)
| ++.+++|||++... +++++.+.
T Consensus 210 ~~~~~g~v~gvivg~Al~~g~i~~~e~~~~ 239 (241)
T PRK14114 210 HRETNGLLKGVIVGRAFLEGILTVEVMKRY 239 (241)
T ss_pred ccccCCcEEEEEEehHHHCCCCCHHHHHHh
Confidence 6 99999999999764 55555443
No 125
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.35 E-value=2.3e-05 Score=66.64 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=88.8
Q ss_pred HHHHhccCCCCcEEEEEeecCh--HHH------------HHHHHHcCCC--------------EEEEcccCCCcchHHHH
Q 029661 15 VVDALRPVTDLPLDVHLMIVEP--EQR------------VPDFIKAGAD--------------IVSVHCEQSSTIHLHRT 66 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp--~~~------------i~~~~~~Gad--------------~v~vh~e~~~~~~~~~~ 66 (190)
.++++|+.++.|+-+.+++..+ ... .+...+.|.. .|+++.-. ...+.
T Consensus 53 ~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~----p~~~~ 128 (330)
T PF03060_consen 53 EIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGL----PPPEV 128 (330)
T ss_dssp HHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSS----C-HHH
T ss_pred HHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeeccc----chHHH
Confidence 4556677788899999998643 222 3344555554 99998753 13678
Q ss_pred HHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCccc-c-hhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661 67 LNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-I-ESQVKKISDLRRMCLEKGVNPWIEVDGG 143 (190)
Q Consensus 67 i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~-~~~~~ki~~~~~~~~~~~~~~~i~vdGG 143 (190)
++.+++.|+++...+ ++++..+..++ .+|.|.+.+.+.|. ..- . ..++..+.++++..+ +++.+.||
T Consensus 129 i~~l~~~gi~v~~~v---~s~~~A~~a~~~G~D~iv~qG~eAGG--H~g~~~~~~~~L~~~v~~~~~-----iPViaAGG 198 (330)
T PF03060_consen 129 IERLHAAGIKVIPQV---TSVREARKAAKAGADAIVAQGPEAGG--HRGFEVGSTFSLLPQVRDAVD-----IPVIAAGG 198 (330)
T ss_dssp HHHHHHTT-EEEEEE---SSHHHHHHHHHTT-SEEEEE-TTSSE--E---SSG-HHHHHHHHHHH-S-----S-EEEESS
T ss_pred HHHHHHcCCcccccc---CCHHHHHHhhhcCCCEEEEeccccCC--CCCccccceeeHHHHHhhhcC-----CcEEEecC
Confidence 999999999877655 36666666554 49999988777653 222 1 246666777777653 78999999
Q ss_pred CC-cccHHHHHHcCCCEEEEccccc
Q 029661 144 VG-PKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 144 I~-~e~~~~~~~aGad~~VvGsaI~ 167 (190)
|. .+.+..+...|||.+.+||...
T Consensus 199 I~dg~~iaaal~lGA~gV~~GTrFl 223 (330)
T PF03060_consen 199 IADGRGIAAALALGADGVQMGTRFL 223 (330)
T ss_dssp --SHHHHHHHHHCT-SEEEESHHHH
T ss_pred cCCHHHHHHHHHcCCCEeecCCeEE
Confidence 97 5788999999999999998754
No 126
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=98.35 E-value=2.6e-06 Score=65.83 Aligned_cols=96 Identities=16% Similarity=0.246 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhC-CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661 62 HLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 139 (190)
Q Consensus 62 ~~~~~i~~i~~~g-~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~ 139 (190)
.+.+.++.+|+.- ...-+.+...+ .+.+++.++ .+|.|++=. |.|+ .++++.+.+...+.++.|+
T Consensus 65 ~i~~av~~~~~~~~~~~~I~VEv~~-~ee~~ea~~~g~d~I~lD~---------~~~~---~~~~~v~~l~~~~~~v~ie 131 (169)
T PF01729_consen 65 GIEEAVKAARQAAPEKKKIEVEVEN-LEEAEEALEAGADIIMLDN---------MSPE---DLKEAVEELRELNPRVKIE 131 (169)
T ss_dssp SHHHHHHHHHHHSTTTSEEEEEESS-HHHHHHHHHTT-SEEEEES----------CHH---HHHHHHHHHHHHTTTSEEE
T ss_pred CHHHHHHHHHHhCCCCceEEEEcCC-HHHHHHHHHhCCCEEEecC---------cCHH---HHHHHHHHHhhcCCcEEEE
Confidence 4778888888852 22114444444 455556554 478887611 2333 3444444444445568999
Q ss_pred EeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 140 VDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 140 vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
+.||||++|+.++.+.|+|++.+||.+.+++
T Consensus 132 ~SGGI~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 132 ASGGITLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp EESSSSTTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred EECCCCHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 9999999999999999999999999888764
No 127
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.34 E-value=2.5e-05 Score=63.98 Aligned_cols=146 Identities=21% Similarity=0.291 Sum_probs=96.1
Q ss_pred CCHHHHH-------HhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC----C----cchHHHHHHHHHHhCC
Q 029661 11 IGPLVVD-------ALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS----S----TIHLHRTLNQIKDLGA 75 (190)
Q Consensus 11 ~G~~~v~-------~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~----~----~~~~~~~i~~i~~~g~ 75 (190)
.+|+++. ++++..++|+-+.++-+|+..-+..+..+|+|.|=+-...+ + .....+++++=++.|.
T Consensus 60 ~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a 139 (254)
T PF03437_consen 60 VGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGA 139 (254)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCC
Confidence 3666655 45665688999999998998878888889999887532111 0 1234566666666666
Q ss_pred cEEE--EEcCC-------CCHHH-HHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661 76 KAGV--VLNPA-------TSLSA-IECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 143 (190)
Q Consensus 76 ~~g~--~i~p~-------t~~~~-~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG 143 (190)
++-+ .+++. .+++. .+..+. .+|-+.+-+.. +|++ ..+++++++|+..+ .++-+.+|
T Consensus 140 ~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~---TG~~---~~~~~l~~vr~~~~-----~PVlvGSG 208 (254)
T PF03437_consen 140 DVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKA---TGEP---PDPEKLKRVREAVP-----VPVLVGSG 208 (254)
T ss_pred CeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcc---cCCC---CCHHHHHHHHhcCC-----CCEEEecC
Confidence 6433 34432 22332 222212 37888764333 2433 35677777777653 68889999
Q ss_pred CCcccHHHHHHcCCCEEEEcccccC
Q 029661 144 VGPKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 144 I~~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
+|++|+.++.+. ||++||||++=+
T Consensus 209 vt~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 209 VTPENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEeeeeee
Confidence 999999998875 999999999653
No 128
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.34 E-value=2.3e-05 Score=63.04 Aligned_cols=135 Identities=17% Similarity=0.081 Sum_probs=92.4
Q ss_pred CHHHHHHhcc-----CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661 12 GPLVVDALRP-----VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 86 (190)
Q Consensus 12 G~~~v~~i~~-----~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~ 86 (190)
..+.++.|++ .+++.+-+-. |.|++. ++.+.++||+.+.-+... .++++.++++|+...--+. ||
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGT-Vl~~e~-a~~a~~aGA~FiVsP~~~------~~v~~~~~~~~i~~iPG~~--Tp 122 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGS-IVDAAT-AALYIQLGANFIVTPLFN------PDIAKVCNRRKVPYSPGCG--SL 122 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEe-CcCHHH-HHHHHHcCCCEEECCCCC------HHHHHHHHHcCCCEeCCCC--CH
Confidence 5567777752 3445566654 345553 577899999998877652 3578999998877544332 45
Q ss_pred HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc--ccHHHHHHcCCCEEEEcc
Q 029661 87 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP--KNAYKVIEAGANALVAGS 164 (190)
Q Consensus 87 ~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~--e~~~~~~~aGad~~VvGs 164 (190)
-|...-+-..+|.|=+ .|+..+ . ..-++.++.-++ +.++...|||++ +|++++.++|+..+.+||
T Consensus 123 sEi~~A~~~Ga~~vKl---FPA~~~---G---~~~ikal~~p~p----~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs 189 (222)
T PRK07114 123 SEIGYAEELGCEIVKL---FPGSVY---G---PGFVKAIKGPMP----WTKIMPTGGVEPTEENLKKWFGAGVTCVGMGS 189 (222)
T ss_pred HHHHHHHHCCCCEEEE---Cccccc---C---HHHHHHHhccCC----CCeEEeCCCCCcchhcHHHHHhCCCEEEEECh
Confidence 5545554446777754 563211 1 333566666554 478999999998 899999999999999999
Q ss_pred cccCC
Q 029661 165 AVFGA 169 (190)
Q Consensus 165 aI~~~ 169 (190)
.+|..
T Consensus 190 ~L~~~ 194 (222)
T PRK07114 190 KLIPK 194 (222)
T ss_pred hhcCc
Confidence 99964
No 129
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.33 E-value=3.6e-05 Score=64.40 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=92.9
Q ss_pred CCCcEEEEEeecChHHHHHH---HHHc--CCCEEEEcccCC-----------CcchHHHHHHHHHHh-CCcEEEEEcCCC
Q 029661 23 TDLPLDVHLMIVEPEQRVPD---FIKA--GADIVSVHCEQS-----------STIHLHRTLNQIKDL-GAKAGVVLNPAT 85 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~---~~~~--Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~-g~~~g~~i~p~t 85 (190)
.+.|+.+.++-.+|+.+.+. +.++ ++|.+-+-.-+. ..+.+.++++++|+. ++.+.+=++++.
T Consensus 89 ~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~ 168 (300)
T TIGR01037 89 FPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNV 168 (300)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 35689999999999877543 4444 389998843220 123467788888875 677777677653
Q ss_pred C-HHHHHHhhc--ccceEEEEeeecC------------------CCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661 86 S-LSAIECVLD--VVDLVLIMSVNPG------------------FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 144 (190)
Q Consensus 86 ~-~~~~~~~~~--~~d~i~~m~v~pG------------------~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI 144 (190)
+ ...+.+.+. .+|.|.+.....| .+|....|..++.+.++++.. +++|...|||
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-----~ipvi~~GGI 243 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-----DIPIIGVGGI 243 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-----CCCEEEECCC
Confidence 2 233333332 3788876422111 122222233345566655532 4788899999
Q ss_pred C-cccHHHHHHcCCCEEEEcccccCCCC
Q 029661 145 G-PKNAYKVIEAGANALVAGSAVFGAKD 171 (190)
Q Consensus 145 ~-~e~~~~~~~aGad~~VvGsaI~~~~d 171 (190)
+ ++++.+++.+|||.+-+||+++..++
T Consensus 244 ~s~~da~~~l~~GAd~V~igr~~l~~p~ 271 (300)
T TIGR01037 244 TSFEDALEFLMAGASAVQVGTAVYYRGF 271 (300)
T ss_pred CCHHHHHHHHHcCCCceeecHHHhcCch
Confidence 6 89999999999999999999887553
No 130
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.32 E-value=3e-05 Score=65.85 Aligned_cols=151 Identities=23% Similarity=0.235 Sum_probs=100.7
Q ss_pred HHHHhccC--CCCcEEEEEeecC-------hHHHHHHHHHcC--CCEEEEcccCC---------CcchHHHHHHHHHHh-
Q 029661 15 VVDALRPV--TDLPLDVHLMIVE-------PEQRVPDFIKAG--ADIVSVHCEQS---------STIHLHRTLNQIKDL- 73 (190)
Q Consensus 15 ~v~~i~~~--~~~~i~~hlmv~d-------p~~~i~~~~~~G--ad~v~vh~e~~---------~~~~~~~~i~~i~~~- 73 (190)
+++++++. .+.|+.+.+.-.+ +.+|.+.+.+++ ||++-+-..+. ..+.+.++++++|+.
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~ 196 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEER 196 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHH
Confidence 45666653 4689999886655 466776655544 89988843221 013466777887774
Q ss_pred C-----CcEEEEEcCCCCHHHHHHhh---c--ccceEEEEeeec---------------CCCCcccchhhHHHHHHHHHH
Q 029661 74 G-----AKAGVVLNPATSLSAIECVL---D--VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRM 128 (190)
Q Consensus 74 g-----~~~g~~i~p~t~~~~~~~~~---~--~~d~i~~m~v~p---------------G~~gq~~~~~~~~ki~~~~~~ 128 (190)
+ +.+.+=++|..+.+.+.++. . .+|.|.+....+ |++|....+..++.++++++.
T Consensus 197 ~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~ 276 (327)
T cd04738 197 NKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKL 276 (327)
T ss_pred hhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHH
Confidence 2 66777677776543333332 2 378887654321 344544445667888888876
Q ss_pred HhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 129 CLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 129 ~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
.+ .+++|...|||+ .+.+.+++.+|||.+-+||+++.
T Consensus 277 ~~---~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 277 TG---GKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred hC---CCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 53 247899999996 89999999999999999999865
No 131
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=98.32 E-value=1.5e-05 Score=64.91 Aligned_cols=132 Identities=17% Similarity=0.269 Sum_probs=88.6
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCH-------HHHHHhh----cccce--E
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SAIECVL----DVVDL--V 100 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-------~~~~~~~----~~~d~--i 100 (190)
.+++.++|++++.+ |.|- .+.+.+.+-++.+.++|+.+.+.+.-.... +.+...+ +.++. =
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~ 156 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAP 156 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcC
Confidence 67899999999999 4332 024667888889999999998888732211 1122222 11110 0
Q ss_pred EEEeeec----CCCCcccchh-hHHHHHHHHHHHhhcC----CCCeEEEeCCCCcccHHHHHHcC-CCEEEEcccccCCC
Q 029661 101 LIMSVNP----GFGGQSFIES-QVKKISDLRRMCLEKG----VNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGAK 170 (190)
Q Consensus 101 ~~m~v~p----G~~gq~~~~~-~~~ki~~~~~~~~~~~----~~~~i~vdGGI~~e~~~~~~~aG-ad~~VvGsaI~~~~ 170 (190)
+++.-+| |+ |....++ .-+-++.+|+.+.+.. .+++|..+|+++++|+.++.+.+ +|++-+||+-.+++
T Consensus 157 ~iIAYEPvWAIGt-G~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~ 235 (242)
T cd00311 157 VVIAYEPVWAIGT-GKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAE 235 (242)
T ss_pred eEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHH
Confidence 2345566 53 4444444 5555677777765432 35789999999999999999999 99999999988654
Q ss_pred CH
Q 029661 171 DY 172 (190)
Q Consensus 171 dp 172 (190)
++
T Consensus 236 ~f 237 (242)
T cd00311 236 SF 237 (242)
T ss_pred HH
Confidence 44
No 132
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.32 E-value=2.9e-05 Score=65.12 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=96.1
Q ss_pred HHHHhccCCCCcEEEEEeec-ChHH---HHHHHHHcCCCEEEEcccCCCcc---hHHHHHHHHHHh-CCcEEEEEcCCCC
Q 029661 15 VVDALRPVTDLPLDVHLMIV-EPEQ---RVPDFIKAGADIVSVHCEQSSTI---HLHRTLNQIKDL-GAKAGVVLNPATS 86 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~-dp~~---~i~~~~~~Gad~v~vh~e~~~~~---~~~~~i~~i~~~-g~~~g~~i~p~t~ 86 (190)
..+++++..+.|+-+.|... +|.. .++.+.+.|++.+.+|..+ +.. ...+.++++++. +..+.+-.. .+
T Consensus 106 ~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~-p~~~~~~~~~~i~~l~~~~~~pvivK~v--~s 182 (299)
T cd02809 106 SLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDT-PVLGRRLTWDDLAWLRSQWKGPLILKGI--LT 182 (299)
T ss_pred CHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCCCHHHHHHHHHhcCCCEEEeec--CC
Confidence 34455554447888998875 7753 4566688899999999875 210 012567777775 555544321 34
Q ss_pred HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcc
Q 029661 87 LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 87 ~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGs 164 (190)
.+..+...+ .+|.|.+-. +.| ......+.+++.+.++++..++ +++|.++|||+ ...+.++...|||.+-+||
T Consensus 183 ~~~a~~a~~~G~d~I~v~~-~gG-~~~~~g~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 183 PEDALRAVDAGADGIVVSN-HGG-RQLDGAPATIDALPEIVAAVGG---RIEVLLDGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred HHHHHHHHHCCCCEEEEcC-CCC-CCCCCCcCHHHHHHHHHHHhcC---CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 455555544 488887632 222 1112345677788888776532 47899999998 6888888899999999999
Q ss_pred ccc
Q 029661 165 AVF 167 (190)
Q Consensus 165 aI~ 167 (190)
+++
T Consensus 258 ~~l 260 (299)
T cd02809 258 PFL 260 (299)
T ss_pred HHH
Confidence 865
No 133
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.32 E-value=3.6e-05 Score=62.39 Aligned_cols=145 Identities=10% Similarity=0.106 Sum_probs=90.0
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEcC--------
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNP-------- 83 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~p-------- 83 (190)
.+.++++.+.+..|+.+.==+.+.+ -++.+.+.||+.|++.-++ ..+++.+-+.++++| -++.+++..
T Consensus 62 ~~~i~~i~~~~~~~v~vGGGIrs~e-~~~~~l~~Ga~kvvigt~a--~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~ 138 (232)
T PRK13586 62 EMYIKEISKIGFDWIQVGGGIRDIE-KAKRLLSLDVNALVFSTIV--FTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLI 138 (232)
T ss_pred HHHHHHHHhhCCCCEEEeCCcCCHH-HHHHHHHCCCCEEEECchh--hCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEc
Confidence 4788888773222554433334433 4577888999999998775 566766666677775 344433332
Q ss_pred ----C---CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 84 ----A---TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 84 ----~---t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
. ++.+.++++.+. +..++++++.--...+-+. ++.++++++. . +. +.+.||++ .+++..+.+
T Consensus 139 ~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d---~el~~~~~~~-~----~~-viasGGv~s~~Dl~~l~~ 209 (232)
T PRK13586 139 RGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGID---YNVKDYARLI-R----GL-KEYAGGVSSDADLEYLKN 209 (232)
T ss_pred cCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcC---HHHHHHHHhC-C----CC-EEEECCCCCHHHHHHHHH
Confidence 1 222344444332 5678887776422233333 3334444443 1 23 56799999 699999999
Q ss_pred cCCCEEEEcccccCC
Q 029661 155 AGANALVAGSAVFGA 169 (190)
Q Consensus 155 aGad~~VvGsaI~~~ 169 (190)
.|+|.+++|+|++..
T Consensus 210 ~G~~gvivg~Aly~g 224 (232)
T PRK13586 210 VGFDYIIVGMAFYLG 224 (232)
T ss_pred CCCCEEEEehhhhcC
Confidence 999999999999853
No 134
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.32 E-value=3.2e-05 Score=62.52 Aligned_cols=141 Identities=18% Similarity=0.184 Sum_probs=90.4
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC---------
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP--------- 83 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p--------- 83 (190)
.+.++++.+.++.|+.+.==+.+.+ -++.+.+.|++.+++.-++ . ++.-+-+.++++|- +.+++..
T Consensus 62 ~~~i~~i~~~~~~pv~~gGGIrs~e-dv~~l~~~G~~~vivGtaa--~-~~~~l~~~~~~~g~-ivvslD~~~g~v~~~g 136 (228)
T PRK04128 62 LDVVKNIIRETGLKVQVGGGLRTYE-SIKDAYEIGVENVIIGTKA--F-DLEFLEKVTSEFEG-ITVSLDVKGGRIAVKG 136 (228)
T ss_pred HHHHHHHHhhCCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchh--c-CHHHHHHHHHHcCC-EEEEEEccCCeEecCC
Confidence 5678888877777777643344443 4566788899999998664 3 45544444555553 5444331
Q ss_pred ------CCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC
Q 029661 84 ------ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG 156 (190)
Q Consensus 84 ------~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG 156 (190)
-++.+.++.+.+.+..++++++.- .|..-.+. .+.+ .+. +.++.+.||++ .+++.++.+.|
T Consensus 137 w~~~~~~~~~~~~~~~~~~~~~ii~t~i~~--dGt~~G~d---~l~~---~~~----~~pviasGGv~~~~Dl~~l~~~g 204 (228)
T PRK04128 137 WLEESSIKVEDAYEMLKNYVNRFIYTSIER--DGTLTGIE---EIER---FWG----DEEFIYAGGVSSAEDVKKLAEIG 204 (228)
T ss_pred CeEcCCCCHHHHHHHHHHHhCEEEEEeccc--hhcccCHH---HHHH---hcC----CCCEEEECCCCCHHHHHHHHHCC
Confidence 122343444433467788888864 33322222 2222 211 36889999999 69999999999
Q ss_pred CCEEEEcccccCCC
Q 029661 157 ANALVAGSAVFGAK 170 (190)
Q Consensus 157 ad~~VvGsaI~~~~ 170 (190)
++.+++||+++...
T Consensus 205 ~~gvivg~al~~g~ 218 (228)
T PRK04128 205 FSGVIIGKALYEGR 218 (228)
T ss_pred CCEEEEEhhhhcCC
Confidence 99999999998764
No 135
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.31 E-value=8.9e-06 Score=65.25 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=78.6
Q ss_pred HHHHhccCCC-CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHH----H---HHHHHHH--hCCcE----EEE
Q 029661 15 VVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLH----R---TLNQIKD--LGAKA----GVV 80 (190)
Q Consensus 15 ~v~~i~~~~~-~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~----~---~i~~i~~--~g~~~----g~~ 80 (190)
.++.+++.++ +|+.. -..|+... .-+||.+.|+..-.+ .++. . .+..+++ .+.++ .+.
T Consensus 44 ~~~~ik~~~~~~Pvil--fp~~~~~i-----~~~aDa~l~~svlns-~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv 115 (219)
T cd02812 44 VVRLIKRIRRPVPVIL--FPSNPEAV-----SPGADAYLFPSVLNS-GDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLV 115 (219)
T ss_pred HHHHHHHhcCCCCEEE--eCCCcccc-----CcCCCEEEEEeeecC-CCchHHHHHHHHHHHHhccccccccccceEEEE
Confidence 4556666554 55554 55665544 357999999854311 1222 2 2233333 23332 345
Q ss_pred EcCCCC------------HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cc
Q 029661 81 LNPATS------------LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK 147 (190)
Q Consensus 81 i~p~t~------------~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e 147 (190)
++|... .+.+..|....+++.+--++--++|..-. .+.++++++... +.++.++|||+ +|
T Consensus 116 ~~~~~~v~~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~---~e~I~~v~~~~~----~~pl~vGGGIrs~e 188 (219)
T cd02812 116 LNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGP---PEVVRAVKKVLG----DTPLIVGGGIRSGE 188 (219)
T ss_pred ECCCCceeeeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCC---HHHHHHHHHhcC----CCCEEEeCCCCCHH
Confidence 555433 23333333333333211122124454423 444555565441 36899999998 89
Q ss_pred cHHHHHHcCCCEEEEcccccCC
Q 029661 148 NAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 148 ~~~~~~~aGad~~VvGsaI~~~ 169 (190)
+++++.++|||.+|+||++++.
T Consensus 189 ~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 189 QAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHHHHHHcCCCEEEECchhhCC
Confidence 9999999999999999999984
No 136
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.27 E-value=2.4e-05 Score=66.96 Aligned_cols=162 Identities=19% Similarity=0.218 Sum_probs=104.5
Q ss_pred cccCcCCC---CHH-HHHHhccC-CCCcEEEEEeec-------ChHHHHHHHHHcC--CCEEEEcccCC---------Cc
Q 029661 4 RFVPNITI---GPL-VVDALRPV-TDLPLDVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCEQS---------ST 60 (190)
Q Consensus 4 ~fvpn~~~---G~~-~v~~i~~~-~~~~i~~hlmv~-------dp~~~i~~~~~~G--ad~v~vh~e~~---------~~ 60 (190)
-|.+.++| |.+ +++++++. .++|+.+-+.-. .+.+|.+.+.+++ ||.+.+-..+. ..
T Consensus 112 ~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~ 191 (344)
T PRK05286 112 ALINRMGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYG 191 (344)
T ss_pred ccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCH
Confidence 45666666 233 45566554 567899988643 3467777665555 99988753321 02
Q ss_pred chHHHHHHHHHHh-C-----CcEEEEEcCCCCHHHHHHhh---c--ccceEEEEeeec---------------CCCCccc
Q 029661 61 IHLHRTLNQIKDL-G-----AKAGVVLNPATSLSAIECVL---D--VVDLVLIMSVNP---------------GFGGQSF 114 (190)
Q Consensus 61 ~~~~~~i~~i~~~-g-----~~~g~~i~p~t~~~~~~~~~---~--~~d~i~~m~v~p---------------G~~gq~~ 114 (190)
+.+.++++++|+. + +.+.+=++|+.+.+.+.+++ . .+|.|.+....+ |.+|...
T Consensus 192 ~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~ 271 (344)
T PRK05286 192 EALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPL 271 (344)
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHH
Confidence 3466788888874 4 66777788886643333332 2 378887654321 2223222
Q ss_pred chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 115 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 115 ~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
.+..++-++++++... .+++|..-|||+ .+++.+++.+|||.+-+||+++.
T Consensus 272 ~~~~l~~v~~l~~~~~---~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~ 323 (344)
T PRK05286 272 FERSTEVIRRLYKELG---GRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY 323 (344)
T ss_pred HHHHHHHHHHHHHHhC---CCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445666777666542 247899999999 79999999999999999999864
No 137
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.25 E-value=8.9e-06 Score=67.30 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=64.1
Q ss_pred HHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 63 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 63 ~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
+...++.+|+. +.++|+.++ .++.+++.+ ..+|||++= | |. ++.++++.+..++ +.++
T Consensus 168 i~~~v~~~r~~~~~~~~Igvev~---s~eea~~A~~~gaDyI~ld---~------~~---~e~l~~~~~~~~~---~ipi 229 (268)
T cd01572 168 ITEAVRRARAAAPFTLKIEVEVE---TLEQLKEALEAGADIIMLD---N------MS---PEELREAVALLKG---RVLL 229 (268)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEC---CHHHHHHHHHcCCCEEEEC---C------cC---HHHHHHHHHHcCC---CCcE
Confidence 45567777775 467777776 345555544 358999762 1 22 3455666655432 4789
Q ss_pred EEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
.+.||||++|+.++.++|+|++.+||...+++
T Consensus 230 ~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~a~ 261 (268)
T cd01572 230 EASGGITLENIRAYAETGVDYISVGALTHSAP 261 (268)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEEeeecCCC
Confidence 99999999999999999999999999777653
No 138
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.25 E-value=4.9e-05 Score=64.56 Aligned_cols=130 Identities=20% Similarity=0.322 Sum_probs=85.2
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC--Ccc
Q 029661 37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS 113 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq~ 113 (190)
...++.+.++|++.|.+....+..+...+.++.+|+.+-.+-+....-.+.+..+.+++ .+|.|.+ +.-||.. ++.
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v-g~g~G~~~~t~~ 174 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV-GIGPGSICTTRI 174 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE-CCCCCcCcccce
Confidence 35678889999999887543222345677899999876323333333355566666655 4899876 3344431 111
Q ss_pred ---cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 114 ---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 114 ---~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.....+.-+.++++...+ .++++..+|||+ ...+.++..+|||.+.+||.+...
T Consensus 175 ~~g~g~p~~~~i~~v~~~~~~--~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t 232 (325)
T cd00381 175 VTGVGVPQATAVADVAAAARD--YGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 232 (325)
T ss_pred eCCCCCCHHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccc
Confidence 112234555666665543 247888999998 689999999999999999988754
No 139
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.24 E-value=6.4e-05 Score=61.81 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=95.2
Q ss_pred HHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcch----HHHHHHHHHHhCC-cE--EEEEc--C
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH----LHRTLNQIKDLGA-KA--GVVLN--P 83 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~----~~~~i~~i~~~g~-~~--g~~i~--p 83 (190)
.+.+++|++ ++.++.+===+ +. +-++.+.++||+.|++---+ ..+ ++-+-+.++++|- ++ ++... .
T Consensus 73 ~~~i~~i~~-~~~~vqvGGGI-R~-e~i~~~l~~Ga~rViigT~A--v~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~ 147 (262)
T PLN02446 73 AAALEALRA-YPGGLQVGGGV-NS-ENAMSYLDAGASHVIVTSYV--FRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKD 147 (262)
T ss_pred HHHHHHHHh-CCCCEEEeCCc-cH-HHHHHHHHcCCCEEEEchHH--HhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecC
Confidence 567888877 55555442112 23 56788999999999997543 334 6666677777752 22 33332 1
Q ss_pred C---------------CCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661 84 A---------------TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P 146 (190)
Q Consensus 84 ~---------------t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~ 146 (190)
. ++.+.+.++.+ .++.+++-.+. .+|....+. ++.++++++.. +.++.+.||++ .
T Consensus 148 g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~--rDGtl~G~d-~el~~~l~~~~-----~ipVIASGGv~sl 219 (262)
T PLN02446 148 GRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVD--VEGKRLGID-EELVALLGEHS-----PIPVTYAGGVRSL 219 (262)
T ss_pred CCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEc--CCCcccCCC-HHHHHHHHhhC-----CCCEEEECCCCCH
Confidence 1 22344455443 36777775554 334332222 44455555543 46899999999 7
Q ss_pred ccHHHHHHc--CCCEEEEcccc--cCCC-CHHHHHHH
Q 029661 147 KNAYKVIEA--GANALVAGSAV--FGAK-DYAEAIKG 178 (190)
Q Consensus 147 e~~~~~~~a--Gad~~VvGsaI--~~~~-dp~~~~~~ 178 (190)
+++..+.+. |...+|+|+|+ |... +.++++.+
T Consensus 220 eDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ea~~~ 256 (262)
T PLN02446 220 DDLERVKVAGGGRVDVTVGSALDIFGGNLPYDDVVAW 256 (262)
T ss_pred HHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHHHHHH
Confidence 999999887 57889999999 8654 55555544
No 140
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.23 E-value=9.6e-05 Score=60.66 Aligned_cols=140 Identities=12% Similarity=0.190 Sum_probs=90.1
Q ss_pred HHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC----C----cchHHHHHHHHHHhCCcEEEE--EcCC--
Q 029661 17 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS----S----TIHLHRTLNQIKDLGAKAGVV--LNPA-- 84 (190)
Q Consensus 17 ~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~----~----~~~~~~~i~~i~~~g~~~g~~--i~p~-- 84 (190)
.++|+...+|+-+.++-+|+..-+..+..+|+|.|=+-..++ + .....+++++-++.|.++-+. +++.
T Consensus 72 ~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~ 151 (257)
T TIGR00259 72 GQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHA 151 (257)
T ss_pred HHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeeccc
Confidence 345555677999999888998888888999999887621110 0 124566777766656555443 3322
Q ss_pred -----CCHHH-HHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC
Q 029661 85 -----TSLSA-IECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG 156 (190)
Q Consensus 85 -----t~~~~-~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG 156 (190)
.+++. ++.... .+|-|.+-+. .+|+.+..+.+ +++|+... +.++-+.||+|++|+.++.+.
T Consensus 152 ~~l~~~~~~e~a~~~~~~~~aDavivtG~---~TG~~~d~~~l---~~vr~~~~----~~PvllggGvt~eNv~e~l~~- 220 (257)
T TIGR00259 152 VHLGNRDLESIALDTVERGLADAVILSGK---TTGTEVDLELL---KLAKETVK----DTPVLAGSGVNLENVEELLSI- 220 (257)
T ss_pred CcCCCCCHHHHHHHHHHhcCCCEEEECcC---CCCCCCCHHHH---HHHHhccC----CCeEEEECCCCHHHHHHHHhh-
Confidence 23322 332222 2788875222 14666655544 44444222 357899999999999999987
Q ss_pred CCEEEEccccc
Q 029661 157 ANALVAGSAVF 167 (190)
Q Consensus 157 ad~~VvGsaI~ 167 (190)
+|++++||.+=
T Consensus 221 adGviVgS~~K 231 (257)
T TIGR00259 221 ADGVIVATTIK 231 (257)
T ss_pred CCEEEECCCcc
Confidence 99999999963
No 141
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=98.22 E-value=0.00011 Score=58.46 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=100.5
Q ss_pred CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh-CCcEEEEEcCCCC--H
Q 029661 12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATS--L 87 (190)
Q Consensus 12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~-g~~~g~~i~p~t~--~ 87 (190)
.++..++|.+. +..+.+.=++-.++..+.+.+.+.+.|.|=+|.+- ..+.++.+|+. ++.+.-+++.... .
T Consensus 39 s~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~~~~~l~~~~~~~v~kai~v~~~~~~ 113 (208)
T COG0135 39 SPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPEYIDQLKEELGVPVIKAISVSEEGDL 113 (208)
T ss_pred CHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHhhcCCceEEEEEeCCccch
Confidence 56677777764 33444443333455667777899999999999862 23466677765 4777767665543 4
Q ss_pred HHHHHhhcccceEEEEeee---cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCC-CEEEEc
Q 029661 88 SAIECVLDVVDLVLIMSVN---PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA-NALVAG 163 (190)
Q Consensus 88 ~~~~~~~~~~d~i~~m~v~---pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGa-d~~VvG 163 (190)
+....+...+|.+++=+-. +|.+||.|.-..+... + ...++...||+|++|+.++++.+. .++=+-
T Consensus 114 ~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~---~-------~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvS 183 (208)
T COG0135 114 ELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL---R-------LSKPVMLAGGLNPDNVAEAIALGPPYGVDVS 183 (208)
T ss_pred hhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc---c-------ccCCEEEECCCCHHHHHHHHHhcCCceEEec
Confidence 5555555668988875542 5778999875554433 1 124588999999999999999988 777777
Q ss_pred ccccCC---CCHHHH
Q 029661 164 SAVFGA---KDYAEA 175 (190)
Q Consensus 164 saI~~~---~dp~~~ 175 (190)
|.+=.+ .|+...
T Consensus 184 SGVE~~pG~KD~~kv 198 (208)
T COG0135 184 SGVESSPGIKDPAKV 198 (208)
T ss_pred cccccCCCCCCHHHH
Confidence 776543 577533
No 142
>PRK14567 triosephosphate isomerase; Provisional
Probab=98.22 E-value=5.3e-05 Score=62.07 Aligned_cols=139 Identities=19% Similarity=0.273 Sum_probs=89.0
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCHH--------H----HHHhhcccce--
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSLS--------A----IECVLDVVDL-- 99 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~--------~----~~~~~~~~d~-- 99 (190)
.+++.++|++++.+ |.|- .+++.+.+-++.+.++|+.+.+.+.- |.-+ . ++..++.++.
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGE-t~eere~g~~~~vv~~Ql~~~l~~i~~~~ 156 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGE-SLDDRQSGKLKQVLATQLSLILENLSVEQ 156 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHccCCHHH
Confidence 67899999999999 3331 02455677788889999999888873 2211 1 1222222111
Q ss_pred --EEEEeeec----CCCCcccchhhH-HHHHHHHHHHhhc----CCCCeEEEeCCCCcccHHHHHHcC-CCEEEEccccc
Q 029661 100 --VLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVF 167 (190)
Q Consensus 100 --i~~m~v~p----G~~gq~~~~~~~-~ki~~~~~~~~~~----~~~~~i~vdGGI~~e~~~~~~~aG-ad~~VvGsaI~ 167 (190)
=++.+-+| |+ |+.-.|+.. +-.+.+|+.+.+. ..+++|..+|+++++|+.++.+.+ +|++-+|++..
T Consensus 157 ~~~ivIAYEPvWAIGT-G~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL 235 (253)
T PRK14567 157 LAKVVIAYEPVWAIGT-GVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASL 235 (253)
T ss_pred hCCEEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhh
Confidence 02345566 43 444333333 2334555544321 235789999999999999998888 99999999988
Q ss_pred CCCCHHHHHHHHH
Q 029661 168 GAKDYAEAIKGIK 180 (190)
Q Consensus 168 ~~~dp~~~~~~l~ 180 (190)
+++++.+-++...
T Consensus 236 ~~~~F~~Ii~~~~ 248 (253)
T PRK14567 236 KAAEFNEIINQAN 248 (253)
T ss_pred cHHHHHHHHHHHH
Confidence 8777766665543
No 143
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.20 E-value=2.9e-05 Score=63.07 Aligned_cols=126 Identities=20% Similarity=0.202 Sum_probs=81.4
Q ss_pred CCEEEEc--ccCC-CcchHHHHHHHHHH---hCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCccc-chhhH
Q 029661 48 ADIVSVH--CEQS-STIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQV 119 (190)
Q Consensus 48 ad~v~vh--~e~~-~~~~~~~~i~~i~~---~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~~~~~ 119 (190)
-+||=+- .+.. -..++.+++++++. .|..|-.-+++ +.-..+++.+ .+..|+-++...|. ||-. .+..+
T Consensus 105 ~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~--D~v~a~rLed~Gc~aVMPlgsPIGS-g~Gl~n~~~l 181 (267)
T CHL00162 105 NNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINA--DPMLAKHLEDIGCATVMPLGSPIGS-GQGLQNLLNL 181 (267)
T ss_pred CCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCC--CHHHHHHHHHcCCeEEeeccCcccC-CCCCCCHHHH
Confidence 6787663 2210 02346677777766 45555544543 2222333332 24455555555564 4433 34444
Q ss_pred HHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 120 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 120 ~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
+.| ++. .++++.+|+||+ ++++....+.|+|.+-+.|+|++++||.+.++.++..++
T Consensus 182 ~~i---~e~-----~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 182 QII---IEN-----AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHH---HHc-----CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 333 332 357899999999 799999999999999999999999999999999887553
No 144
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.20 E-value=0.00013 Score=58.22 Aligned_cols=146 Identities=18% Similarity=0.140 Sum_probs=93.7
Q ss_pred CHHHHHHhccC-C-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH-hCCcEEEEEcCCC--C
Q 029661 12 GPLVVDALRPV-T-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-LGAKAGVVLNPAT--S 86 (190)
Q Consensus 12 G~~~v~~i~~~-~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~-~g~~~g~~i~p~t--~ 86 (190)
.++..++|.+. + .+..+.=+.-.++....+.+.+.+.|.|-+|... ++ ..++.+|+ .++++.-++.... .
T Consensus 40 ~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e----~~-~~~~~l~~~~~~~iik~i~v~~~~~ 114 (210)
T PRK01222 40 SPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDE----TP-EFCRQLKRRYGLPVIKALRVRSAGD 114 (210)
T ss_pred CHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC----CH-HHHHHHHhhcCCcEEEEEecCCHHH
Confidence 56667777764 2 2444443334567778888899999999999753 22 34666666 4677766666544 3
Q ss_pred HHHHHHhhcccceEEEEeeec--CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc-CCCEEEEc
Q 029661 87 LSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAG 163 (190)
Q Consensus 87 ~~~~~~~~~~~d~i~~m~v~p--G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a-Gad~~VvG 163 (190)
+....++.+.+|++++=+..| |.+|..|.-..+ . +.+ ..++.++|||+++|+.++++. +..++=+-
T Consensus 115 l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l---~--~~~------~~p~~LAGGi~peNv~~ai~~~~p~gvDvs 183 (210)
T PRK01222 115 LEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLL---P--AGL------AKPWILAGGLNPDNVAEAIRQVRPYGVDVS 183 (210)
T ss_pred HHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHh---h--hcc------CCCEEEECCCCHHHHHHHHHhcCCCEEEec
Confidence 444455556689988755433 555766654333 1 111 236789999999999998875 77777777
Q ss_pred ccccCC---CCHH
Q 029661 164 SAVFGA---KDYA 173 (190)
Q Consensus 164 saI~~~---~dp~ 173 (190)
|.+=.+ .|+.
T Consensus 184 SgvE~~~G~KD~~ 196 (210)
T PRK01222 184 SGVESAPGIKDPE 196 (210)
T ss_pred CceECCCCCcCHH
Confidence 776432 4554
No 145
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=98.19 E-value=1.2e-05 Score=66.37 Aligned_cols=88 Identities=16% Similarity=0.288 Sum_probs=60.0
Q ss_pred HHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 63 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 63 ~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
....++.+|+. +.++|+.++ .++.+.+.+ ..+|||.+ .| +.+ +.++++.+.++. ..++
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~---t~eea~~A~~~gaDyI~l---d~------~~~---e~lk~~v~~~~~---~ipi 225 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE---SLEEAEEAAEAGADIIML---DN------MKP---EEIKEAVQLLKG---RVLL 225 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC---CHHHHHHHHHcCCCEEEE---CC------CCH---HHHHHHHHHhcC---CCcE
Confidence 56677888874 466777775 334444444 35899976 11 233 334544444432 2689
Q ss_pred EEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.+.||||++|++++.++|+|++.+ |+++.+
T Consensus 226 ~AsGGI~~~ni~~~a~~Gvd~Isv-gait~s 255 (265)
T TIGR00078 226 EASGGITLDNLEEYAETGVDVISS-GALTHS 255 (265)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEe-CHHHcC
Confidence 999999999999999999999999 556653
No 146
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.18 E-value=4.7e-05 Score=64.15 Aligned_cols=133 Identities=21% Similarity=0.216 Sum_probs=92.0
Q ss_pred HHHHHHc-CCCEEEE--cccCC-CcchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhcccceEEEEe-eec-CCC
Q 029661 40 VPDFIKA-GADIVSV--HCEQS-STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIMS-VNP-GFG 110 (190)
Q Consensus 40 i~~~~~~-Gad~v~v--h~e~~-~~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~-v~p-G~~ 110 (190)
.+.+.++ |-|||=+ +.|.- ...++.++++++++. |+.+-..+++ +....+.+.+. --+.+|. -.| | +
T Consensus 156 a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~--d~~~a~~l~~~-g~~avmPl~~pIG-s 231 (326)
T PRK11840 156 LRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSD--DPIAAKRLEDA-GAVAVMPLGAPIG-S 231 (326)
T ss_pred HHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHhc-CCEEEeecccccc-C
Confidence 4445665 5688876 34321 134688999999998 9988777764 33334444332 2355555 333 5 4
Q ss_pred Cccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 111 GQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 111 gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
|+.. .|+.+ +.+++. .++++.+|+||+ ++++....+.|+|.+-+-|+|.+++||...++.++...+
T Consensus 232 g~gv~~p~~i---~~~~e~-----~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 232 GLGIQNPYTI---RLIVEG-----ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred CCCCCCHHHH---HHHHHc-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 5443 34444 444433 347899999999 799999999999999999999999999999999987543
No 147
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.17 E-value=5.5e-05 Score=67.00 Aligned_cols=129 Identities=19% Similarity=0.345 Sum_probs=84.6
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC--Ccc-
Q 029661 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS- 113 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq~- 113 (190)
+.++.+.++|+|.|.+-.-.+......+.++.+|+.--++-+....-...+..+.+++ .+|.|-+ ++.||.. .+.
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~v-g~g~G~~~~t~~~ 305 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRV-GIGPGSICTTRIV 305 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEE-CCCCCcCCcccee
Confidence 4567889999999998543222345777888888862223222322234444555554 4898866 6677721 111
Q ss_pred --cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 114 --FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 114 --~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
+....+.-+.++++...+ .+.+|.+||||+ +..+.++.++|||.+.+||.+...
T Consensus 306 ~~~g~p~~~~i~~~~~~~~~--~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~ 362 (450)
T TIGR01302 306 AGVGVPQITAVYDVAEYAAQ--SGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT 362 (450)
T ss_pred cCCCccHHHHHHHHHHHHhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 122234555666655543 357899999999 789999999999999999999864
No 148
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.17 E-value=4.9e-05 Score=64.48 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=78.7
Q ss_pred HHHHHHHHcCC--CEEEE-----cccCCCcchHHHHHHHHHHhCCcEEEEE-cCCCCHHHHHHhhc-ccceEEEEeeecC
Q 029661 38 QRVPDFIKAGA--DIVSV-----HCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPG 108 (190)
Q Consensus 38 ~~i~~~~~~Ga--d~v~v-----h~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t~~~~~~~~~~-~~d~i~~m~v~pG 108 (190)
+.++.+.++|+ |.+.+ |.+ ...++++.+|+.--.+-+.. +.. +.+..+.+.+ .+|.+.+ +..||
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~-----~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~aGad~i~v-g~~~G 172 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSD-----SVINMIQHIKKHLPETFVIAGNVG-TPEAVRELENAGADATKV-GIGPG 172 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchH-----HHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHHcCcCEEEE-CCCCC
Confidence 34677899955 99999 544 47778999988543233333 333 4455566554 4888654 55555
Q ss_pred CC-------CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 109 FG-------GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 109 ~~-------gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.. |.......+.-++++++.. +.+|-.+|||+ +.++.++..+|||.+.+|+++.+.
T Consensus 173 ~~~~t~~~~g~~~~~w~l~ai~~~~~~~-----~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~ 236 (326)
T PRK05458 173 KVCITKIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGH 236 (326)
T ss_pred cccccccccCCCCCccHHHHHHHHHHHc-----CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCC
Confidence 21 1111111333455555432 36789999999 789999999999999999999854
No 149
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.15 E-value=2e-05 Score=62.65 Aligned_cols=131 Identities=19% Similarity=0.241 Sum_probs=79.4
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHH----HHHHHH---HHhCCcE----EEEEcC
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLH----RTLNQI---KDLGAKA----GVVLNP 83 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~----~~i~~i---~~~g~~~----g~~i~p 83 (190)
.++.+|+.+++|+.+ -..|+.... -+||.+.|+..-. ..++. .-.+.+ |++|.++ .+.++|
T Consensus 44 ~v~~ik~~~~lPvil--fp~~~~~i~-----~~aD~~~~~slln-s~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~ 115 (205)
T TIGR01769 44 TVKKIKKITNLPVIL--FPGNVNGLS-----RYADAVFFMSLLN-SADTYFIVGAQILGAITILKLNLEVIPMAYLIVGP 115 (205)
T ss_pred HHHHHHhhcCCCEEE--ECCCccccC-----cCCCEEEEEEeec-CCCcchhhhHHHHHHHHHHHcCCcccceEEEEECC
Confidence 468888878889887 455544333 4799999985331 12222 223334 7777654 234443
Q ss_pred C--------------CCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661 84 A--------------TSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 144 (190)
Q Consensus 84 ~--------------t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI 144 (190)
. .+.+....|... .+++.+-.. -|+ + .+...+.++++|+.. +.++.+.|||
T Consensus 116 ~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~-sGa-~---~~v~~e~i~~Vk~~~-----~~Pv~vGGGI 185 (205)
T TIGR01769 116 GGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAG-SGA-S---YPVNPETISLVKKAS-----GIPLIVGGGI 185 (205)
T ss_pred CCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcC-CCC-C---CCCCHHHHHHHHHhh-----CCCEEEeCCC
Confidence 2 344555554432 355544111 132 1 122355566666664 3689999999
Q ss_pred C-cccHHHHHHcCCCEEEEc
Q 029661 145 G-PKNAYKVIEAGANALVAG 163 (190)
Q Consensus 145 ~-~e~~~~~~~aGad~~VvG 163 (190)
+ +++++++.++|||.+|+|
T Consensus 186 rs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 186 RSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHcCCCEEEeC
Confidence 8 799999999999999998
No 150
>PRK08227 autoinducer 2 aldolase; Validated
Probab=98.14 E-value=2.4e-05 Score=64.47 Aligned_cols=150 Identities=13% Similarity=0.166 Sum_probs=95.8
Q ss_pred HHHHhcc-CCCCcEEEEEeecC-----h--H---HHHHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCcE
Q 029661 15 VVDALRP-VTDLPLDVHLMIVE-----P--E---QRVPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKA 77 (190)
Q Consensus 15 ~v~~i~~-~~~~~i~~hlmv~d-----p--~---~~i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~~ 77 (190)
.++.... ..++++.+||=-.. | . .-++.+.+.|||.|.+|..-++ .+++.++.+.++++|+-+
T Consensus 64 ~~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Pl 143 (264)
T PRK08227 64 ILRSVVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPV 143 (264)
T ss_pred HHHhcccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 4444333 35678888875421 2 1 1378899999999999965432 234667778899999987
Q ss_pred EEEEcCCCC-H----HHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-
Q 029661 78 GVVLNPATS-L----SAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP- 146 (190)
Q Consensus 78 g~~i~p~t~-~----~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~- 146 (190)
.. +.|..+ + +.+.... + .+|.|=+ -+| + +..+++-+- ...++.+.||=+.
T Consensus 144 la-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~--~y~---~--------~~f~~vv~a-----~~vPVviaGG~k~~ 204 (264)
T PRK08227 144 MA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKT--YYV---E--------EGFERITAG-----CPVPIVIAGGKKLP 204 (264)
T ss_pred EE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEec--CCC---H--------HHHHHHHHc-----CCCcEEEeCCCCCC
Confidence 66 445433 1 1111111 1 1465531 112 1 223333332 2368889999883
Q ss_pred -----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhh
Q 029661 147 -----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 183 (190)
Q Consensus 147 -----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~ 183 (190)
+.+...+++||-++++||.||+++||.+.++.+++.+
T Consensus 205 ~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IV 246 (264)
T PRK08227 205 ERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVV 246 (264)
T ss_pred HHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHH
Confidence 2456778999999999999999999999999998754
No 151
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.14 E-value=6.8e-05 Score=67.27 Aligned_cols=126 Identities=22% Similarity=0.303 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE-cCCCCHHHHHHhhc-ccceEEEEeeecCCC--Cc
Q 029661 37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQ 112 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq 112 (190)
.+-++.+.++|+|.|.+-.-.+......+.++++|+.--..-+.. +..|. +..+..++ .+|.|.+ +.+||.. .+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~-e~a~~a~~aGaD~i~v-g~g~G~~~~t~ 327 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTM-YQAQNLIQAGVDGLRV-GMGSGSICTTQ 327 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCH-HHHHHHHHcCcCEEEE-CCCCCccccCc
Confidence 356788999999999985432212223378999998532233322 34444 44445444 4898765 5555521 11
Q ss_pred c-----c-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 113 S-----F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 113 ~-----~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
. . ....+..+.++.+ + .+.+|.+||||+ .+.+.++..+|||.+.+||++...
T Consensus 328 ~~~~~g~~~~~~i~~~~~~~~---~--~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t 386 (505)
T PLN02274 328 EVCAVGRGQATAVYKVASIAA---Q--HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGT 386 (505)
T ss_pred cccccCCCcccHHHHHHHHHH---h--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccc
Confidence 1 0 1123444444443 2 347899999999 789999999999999999999864
No 152
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.13 E-value=7e-05 Score=63.29 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=82.5
Q ss_pred HHHHHcCCCEEEEcccCC--------C----------------cchHHHHHHHHHHh---CCcEEEEEcCCC------CH
Q 029661 41 PDFIKAGADIVSVHCEQS--------S----------------TIHLHRTLNQIKDL---GAKAGVVLNPAT------SL 87 (190)
Q Consensus 41 ~~~~~~Gad~v~vh~e~~--------~----------------~~~~~~~i~~i~~~---g~~~g~~i~p~t------~~ 87 (190)
+.+.++|+|.|-+|.-.+ + ..-+.++++++|+. ++.+++-+++.. +.
T Consensus 148 ~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~ 227 (327)
T cd02803 148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL 227 (327)
T ss_pred HHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCH
Confidence 446788999999996421 0 01135788888884 567888888753 22
Q ss_pred HHHH----Hhhc-ccceEEEEeeecCCCCccc---------chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHH
Q 029661 88 SAIE----CVLD-VVDLVLIMSVNPGFGGQSF---------IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV 152 (190)
Q Consensus 88 ~~~~----~~~~-~~d~i~~m~v~pG~~gq~~---------~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~ 152 (190)
+... .+.+ .+|+|.+ ..|...+.. .+..++.++++|+.. +.+|.+.|||+ ++++.++
T Consensus 228 ~e~~~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~Ggi~t~~~a~~~ 299 (327)
T cd02803 228 EEAIEIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-----KIPVIAVGGIRDPEVAEEI 299 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHHHHC-----CCCEEEeCCCCCHHHHHHH
Confidence 3222 2222 2788764 333322211 123345566666654 47899999998 8999999
Q ss_pred HHc-CCCEEEEcccccCCCCHHHH
Q 029661 153 IEA-GANALVAGSAVFGAKDYAEA 175 (190)
Q Consensus 153 ~~a-Gad~~VvGsaI~~~~dp~~~ 175 (190)
++. |+|.+-+||+++..+|....
T Consensus 300 l~~g~aD~V~igR~~ladP~l~~k 323 (327)
T cd02803 300 LAEGKADLVALGRALLADPDLPNK 323 (327)
T ss_pred HHCCCCCeeeecHHHHhCccHHHH
Confidence 998 79999999999987766543
No 153
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.12 E-value=0.00026 Score=59.29 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=93.8
Q ss_pred CCCcEEEEEeecChHHHHHH---HHHc---CCCEEEEcccCC----------CcchHHHHHHHHHHh-CCcEEEEEcCCC
Q 029661 23 TDLPLDVHLMIVEPEQRVPD---FIKA---GADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPAT 85 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~---~~~~---Gad~v~vh~e~~----------~~~~~~~~i~~i~~~-g~~~g~~i~p~t 85 (190)
.+.|+.+.++-. ++.|++. +.+. |+|++-+-..+. ..+.+.++++.+++. .+.+.+=+.|.+
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~ 168 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT 168 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 468999999877 8877654 3443 699988843320 123466778888775 566666688888
Q ss_pred CHHHHHHhhc-------ccceEEE-------Eeeec--------------CCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661 86 SLSAIECVLD-------VVDLVLI-------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPW 137 (190)
Q Consensus 86 ~~~~~~~~~~-------~~d~i~~-------m~v~p--------------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~ 137 (190)
+.+.+.++++ .+|.|.. |.+++ |.+|....+..++.++++++..+ .+++
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~---~~ip 245 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLP---SEIQ 245 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcC---CCCC
Confidence 7554444433 2444442 11221 22233334556666777766553 2478
Q ss_pred EEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 138 IEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 138 i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
|..-|||. .+++.+++.+|||.+=+||+++.
T Consensus 246 Iig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 246 IIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 99999999 79999999999999999999885
No 154
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=98.12 E-value=1.7e-05 Score=65.73 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=56.8
Q ss_pred HHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEe
Q 029661 64 HRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 141 (190)
Q Consensus 64 ~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd 141 (190)
.+.++.+|+.- .++++.+. |.-+..+.....+|||.+=.+. |..+ +++.+.+.+...++++.+.
T Consensus 171 ~~av~~~R~~~~~~~IgVev~--t~eea~~A~~~gaD~I~ld~~~---------p~~l---~~~~~~~~~~~~~i~i~As 236 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD--SLEEALAAAEAGADILQLDKFS---------PEEL---AELVPKLRSLAPPVLLAAA 236 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC--CHHHHHHHHHcCCCEEEECCCC---------HHHH---HHHHHHHhccCCCceEEEE
Confidence 56778888753 44555554 4433333333458999763222 2222 3333333222235789999
Q ss_pred CCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 142 GGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 142 GGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
||||++|+.++.++|+|++ +.|+|+.+
T Consensus 237 GGI~~~ni~~~~~~Gvd~I-~vsai~~a 263 (272)
T cd01573 237 GGINIENAAAYAAAGADIL-VTSAPYYA 263 (272)
T ss_pred CCCCHHHHHHHHHcCCcEE-EEChhhcC
Confidence 9999999999999999999 55555654
No 155
>PRK14565 triosephosphate isomerase; Provisional
Probab=98.12 E-value=8.2e-05 Score=60.41 Aligned_cols=135 Identities=14% Similarity=0.204 Sum_probs=84.5
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCH-------HHHH----HhhcccceEEE
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SAIE----CVLDVVDLVLI 102 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-------~~~~----~~~~~~d~i~~ 102 (190)
.+.+.++|++++.+ |.|- ...+.+.+-++.+.++|+.+.+.+.-.... +.+. ..++..+- ++
T Consensus 78 ~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~~~~-iv 156 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPKHGE-FI 156 (237)
T ss_pred HHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcCCCC-EE
Confidence 57899999999999 4332 013344455588889999998888732211 1111 11111111 33
Q ss_pred Eeeec----CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc-CCCEEEEcccccCCCCHHHHHH
Q 029661 103 MSVNP----GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGAKDYAEAIK 177 (190)
Q Consensus 103 m~v~p----G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a-Gad~~VvGsaI~~~~dp~~~~~ 177 (190)
.+-+| | +|+...|+- +.+..+.+.+...+.+|..+|+++++|+.++.+. ++|++-+||+..+++++..-++
T Consensus 157 IAYEPvWAIG-tG~~a~~e~---i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~ 232 (237)
T PRK14565 157 IAYEPVWAIG-GSTIPSNDA---IAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQ 232 (237)
T ss_pred EEECCHHHhC-CCCCCCHHH---HHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHH
Confidence 45566 4 355444433 3333333332223578999999999999988664 8999999999988777766655
Q ss_pred HH
Q 029661 178 GI 179 (190)
Q Consensus 178 ~l 179 (190)
.+
T Consensus 233 ~~ 234 (237)
T PRK14565 233 QV 234 (237)
T ss_pred HH
Confidence 43
No 156
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=98.11 E-value=8.9e-05 Score=60.75 Aligned_cols=138 Identities=18% Similarity=0.283 Sum_probs=84.8
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCH-------HH----HHHhhcccce---
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SA----IECVLDVVDL--- 99 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-------~~----~~~~~~~~d~--- 99 (190)
.+++.++|++++.+ |.|- .+.+.+.+-++.+.++|+.+.+.+.-.... +. +...++.++.
T Consensus 79 ~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~ 158 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQF 158 (250)
T ss_pred HHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHh
Confidence 67899999999999 4332 013345555556999999999888632111 11 1222222211
Q ss_pred -EEEEeeec----CCCCcccchhhHHH-HHHHHHHHhh----cCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccC
Q 029661 100 -VLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLE----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFG 168 (190)
Q Consensus 100 -i~~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~----~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~ 168 (190)
=++..-+| |+ |..-.++-.+. .+.+|+.+.+ ...+++|..+|+++++|+.++ ...++|++-+||+..+
T Consensus 159 ~~~vIAYEPvWAIGt-G~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~ 237 (250)
T PRK00042 159 ANLVIAYEPVWAIGT-GKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLK 237 (250)
T ss_pred CCEEEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 02335566 53 44433333322 2344444332 123578999999999999865 6778999999999998
Q ss_pred CCCHHHHHHH
Q 029661 169 AKDYAEAIKG 178 (190)
Q Consensus 169 ~~dp~~~~~~ 178 (190)
++++.+-++.
T Consensus 238 ~~~f~~ii~~ 247 (250)
T PRK00042 238 AEDFLAIVKA 247 (250)
T ss_pred hHHHHHHHHH
Confidence 8877766654
No 157
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.11 E-value=0.00012 Score=65.52 Aligned_cols=129 Identities=20% Similarity=0.288 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC--Ccc-
Q 029661 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS- 113 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq~- 113 (190)
+.++.+.++|+|.|.+-.-.+......+.++.+|+.--.+-+....-...+..+.+++ .+|.|.+ ++.||.. .+.
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~v-g~g~Gs~~~t~~~ 322 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRI-GMGSGSICITQEV 322 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEE-CCcCCcccccchh
Confidence 4567789999999997543221223456888888863233333322334455555554 4898765 6666631 110
Q ss_pred --cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 114 --FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 114 --~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
+.-..+.-+.++++...+ .++++..||||. +..+.++..+|||.+.+||.+...
T Consensus 323 ~~~g~p~~~ai~~~~~~~~~--~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 323 CAVGRPQASAVYHVARYARE--RGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGT 379 (495)
T ss_pred ccCCCChHHHHHHHHHHHhh--cCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccc
Confidence 111124455566665544 347899999999 789999999999999999998763
No 158
>PRK06801 hypothetical protein; Provisional
Probab=98.11 E-value=7e-05 Score=62.50 Aligned_cols=149 Identities=12% Similarity=0.119 Sum_probs=98.6
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC-cch---HHHHHHHHHHhCCcEEEE---E------
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKAGVV---L------ 81 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~-~~~---~~~~i~~i~~~g~~~g~~---i------ 81 (190)
.++.+.+..++|+.+||==....+.++.+.+.|+++|-+=....+ .++ -.++.+.++++|+.+-.. +
T Consensus 65 ~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~ 144 (286)
T PRK06801 65 AVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGG 144 (286)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCC
Confidence 344445557889999985554456788999999999998432211 122 345666788888765111 1
Q ss_pred --------cCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCC--CCccc
Q 029661 82 --------NPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKN 148 (190)
Q Consensus 82 --------~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGG--I~~e~ 148 (190)
+..|..+..+++.+ .+|++.+ ++-+--+-.+.. +..+++++++++.. ++++..-|| |+.++
T Consensus 145 v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~-----~~PLVlHGGSgi~~e~ 218 (286)
T PRK06801 145 ALYGEADSAKFTDPQLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQT-----GLPLVLHGGSGISDAD 218 (286)
T ss_pred cccCCcccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhc-----CCCEEEECCCCCCHHH
Confidence 11345566666663 4898876 432211111112 24577777777654 368899999 99999
Q ss_pred HHHHHHcCCCEEEEcccccCC
Q 029661 149 AYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsaI~~~ 169 (190)
+++++++|++.+-++|.++.+
T Consensus 219 ~~~~i~~Gi~KINv~T~~~~a 239 (286)
T PRK06801 219 FRRAIELGIHKINFYTGMSQA 239 (286)
T ss_pred HHHHHHcCCcEEEehhHHHHH
Confidence 999999999999999999863
No 159
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.11 E-value=0.00023 Score=59.73 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=100.0
Q ss_pred HHHhccC-CCCcEEEEEeec-ChHHHHH---HHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHh-CC
Q 029661 16 VDALRPV-TDLPLDVHLMIV-EPEQRVP---DFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDL-GA 75 (190)
Q Consensus 16 v~~i~~~-~~~~i~~hlmv~-dp~~~i~---~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~-g~ 75 (190)
++++++. .+.|+.+.+.-. +++.|.+ .+.+.|+|.+-+-..+. ..+.+.++++.+++. ++
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~ 169 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKI 169 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCC
Confidence 4444443 357899988777 8877654 45567999998843321 012356777777764 45
Q ss_pred cEEEEEcCCCC-HHHHHH-hhc-ccceEEE-------Ee-----------eec-----CCCCcccchhhHHHHHHHHHHH
Q 029661 76 KAGVVLNPATS-LSAIEC-VLD-VVDLVLI-------MS-----------VNP-----GFGGQSFIESQVKKISDLRRMC 129 (190)
Q Consensus 76 ~~g~~i~p~t~-~~~~~~-~~~-~~d~i~~-------m~-----------v~p-----G~~gq~~~~~~~~ki~~~~~~~ 129 (190)
.+.+=+.|+.+ ...+.+ ..+ .+|.|.+ |. +++ |++|....|..++.+.++++..
T Consensus 170 Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~ 249 (299)
T cd02940 170 PVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAP 249 (299)
T ss_pred CeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhc
Confidence 56666776542 323333 222 3787763 21 121 4556555677788888888876
Q ss_pred hhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 130 LEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 130 ~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
+ .+++|...|||+ .+++.+++.+|||.+-+||+++.
T Consensus 250 ~---~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 250 E---PGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred C---CCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 3 247899999999 78999999999999999999876
No 160
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.10 E-value=2.5e-05 Score=65.11 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 62 HLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 62 ~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
.+.+.++.+|++- .+ +.+..+| ++.+.+.++ .+|.|++ + .|.|+. ++++.+++++.+.+..+
T Consensus 185 ~i~~ai~~~r~~~~~~k--IeVEv~t-l~ea~eal~~gaDiI~L-------D--nm~~e~---vk~av~~~~~~~~~v~i 249 (289)
T PRK07896 185 SVVAALRAVRAAAPDLP--CEVEVDS-LEQLDEVLAEGAELVLL-------D--NFPVWQ---TQEAVQRRDARAPTVLL 249 (289)
T ss_pred cHHHHHHHHHHhCCCCC--EEEEcCC-HHHHHHHHHcCCCEEEe-------C--CCCHHH---HHHHHHHHhccCCCEEE
Confidence 4677888888752 33 4444333 444555554 4898876 2 244444 34444444334456789
Q ss_pred EEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
++.||||++|+.++.+.|+|++++|+...+++
T Consensus 250 eaSGGI~~~ni~~yA~tGvD~Is~galt~sa~ 281 (289)
T PRK07896 250 ESSGGLTLDTAAAYAETGVDYLAVGALTHSVP 281 (289)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 99999999999999999999999999877654
No 161
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=98.10 E-value=8e-05 Score=63.93 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=90.1
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HHHH----HHhhcccc---e
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAI----ECVLDVVD---L 99 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~~~----~~~~~~~d---~ 99 (190)
.+++.++|++++.+ |.|- ..++.+..-++.+.++|+.+.+.+.-... .+.+ +..++.++ +
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~~~ 167 (355)
T PRK14905 88 PLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQL 167 (355)
T ss_pred HHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHhhc
Confidence 67899999999999 4331 02345667788889999999988873211 1111 12222111 0
Q ss_pred -EEEEeeec----CCCCcccch----hhHHHHHHH-HHHHhhcCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccC
Q 029661 100 -VLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFG 168 (190)
Q Consensus 100 -i~~m~v~p----G~~gq~~~~----~~~~ki~~~-~~~~~~~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~ 168 (190)
=++.+.+| |++|+...+ .+.+.|++. .++..+...+++|..+|+++++|+.++ ...++|++-+||+..+
T Consensus 168 ~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~ 247 (355)
T PRK14905 168 PHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAWD 247 (355)
T ss_pred CceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhcc
Confidence 02345566 665665444 333344432 222221123578999999999999876 5677999999999998
Q ss_pred CCCHHHHHHHHHHh
Q 029661 169 AKDYAEAIKGIKTS 182 (190)
Q Consensus 169 ~~dp~~~~~~l~~~ 182 (190)
++++.+.++.+.+.
T Consensus 248 ~~~f~~Ii~~~~~~ 261 (355)
T PRK14905 248 AQCFHALIADALKA 261 (355)
T ss_pred HHHHHHHHHHHHHh
Confidence 88887666665543
No 162
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.08 E-value=3.5e-05 Score=63.97 Aligned_cols=96 Identities=17% Similarity=0.277 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcC--CCCeE
Q 029661 62 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG--VNPWI 138 (190)
Q Consensus 62 ~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~--~~~~i 138 (190)
.+.+.++.+|++....-+.+..+ +++.+.+.++ .+|.|++ +. |.|+. ++++.+.+.+.+ .++.+
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv~-~leea~~a~~agaDiI~L-------Dn--~~~e~---l~~~v~~l~~~~~~~~~~l 234 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEVE-SLEDALKAAKAGADIIML-------DN--MTPEE---IREVIEALKREGLRERVKI 234 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeC-CHHHHHHHHHcCcCEEEE-------CC--CCHHH---HHHHHHHHHhcCcCCCEEE
Confidence 36778888888753222444433 4455556555 4898765 22 33444 444444443332 45789
Q ss_pred EEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
++.||||++|+.++.+.|+|++++|+...+++
T Consensus 235 eaSGGI~~~ni~~yA~tGvD~Is~galt~sa~ 266 (278)
T PRK08385 235 EVSGGITPENIEEYAKLDVDVISLGALTHSVR 266 (278)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 99999999999999999999999999777653
No 163
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.07 E-value=0.00034 Score=59.19 Aligned_cols=143 Identities=16% Similarity=0.235 Sum_probs=93.2
Q ss_pred CCCcEEEEEeecChHHHHH---HHHHcCCCEEEEcccCC----------C-----cchHHHHHHHHHHh-CCcEEEEEcC
Q 029661 23 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS----------S-----TIHLHRTLNQIKDL-GAKAGVVLNP 83 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~~----------~-----~~~~~~~i~~i~~~-g~~~g~~i~p 83 (190)
.+.|+.+.|.-++|+.+.+ .+.++|+|.|-+|.-+. + .+-+.++++.+++. ++.+.+=+..
T Consensus 61 ~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~ 140 (319)
T TIGR00737 61 DETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI 140 (319)
T ss_pred ccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 3679999999999987754 45678999999985431 0 11234667777663 5666665542
Q ss_pred C---C---CHHHHHHhhc-ccceEEEEeeecCCCCccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHH-
Q 029661 84 A---T---SLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI- 153 (190)
Q Consensus 84 ~---t---~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~- 153 (190)
. + ..+.++.+.+ .+|.|.+.+..+ .|.+ .+..++.++++++.. ++++.+.|||+ ++++.++.
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~---~~~~~~~~~~~~i~~i~~~~-----~ipvi~nGgI~~~~da~~~l~ 212 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQAVTLHGRTR---AQGYSGEANWDIIARVKQAV-----RIPVIGNGDIFSPEDAKAMLE 212 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCCEEEEEcccc---cccCCCchhHHHHHHHHHcC-----CCcEEEeCCCCCHHHHHHHHH
Confidence 1 1 1233333333 378887654332 1111 133466677776654 37899999998 78999888
Q ss_pred HcCCCEEEEcccccCCCCHH
Q 029661 154 EAGANALVAGSAVFGAKDYA 173 (190)
Q Consensus 154 ~aGad~~VvGsaI~~~~dp~ 173 (190)
..|||.+.+||+++..+..-
T Consensus 213 ~~gad~VmigR~~l~~P~l~ 232 (319)
T TIGR00737 213 TTGCDGVMIGRGALGNPWLF 232 (319)
T ss_pred hhCCCEEEEChhhhhCChHH
Confidence 68999999999998766543
No 164
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.07 E-value=2.2e-05 Score=65.21 Aligned_cols=91 Identities=14% Similarity=0.279 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 62 HLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 62 ~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
.+...++.+|+.. .++++.+. | .+.+.+.++ .+|+|++ . .|.++ .++++.++.+ .+.++
T Consensus 175 ~v~~av~~~r~~~~~~~I~VEv~--t-leea~eA~~~gaD~I~L---D------~~~~e---~l~~~v~~~~---~~i~l 236 (277)
T PRK05742 175 GIAQAVAAAHRIAPGKPVEVEVE--S-LDELRQALAAGADIVML---D------ELSLD---DMREAVRLTA---GRAKL 236 (277)
T ss_pred CHHHHHHHHHHhCCCCeEEEEeC--C-HHHHHHHHHcCCCEEEE---C------CCCHH---HHHHHHHHhC---CCCcE
Confidence 3566778888764 55666554 3 555555444 4899965 1 23334 3454444442 24789
Q ss_pred EEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
.+.||||++|++++.+.|+|++.+|+...+++
T Consensus 237 eAsGGIt~~ni~~~a~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 237 EASGGINESTLRVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence 99999999999999999999999999877764
No 165
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.05 E-value=0.00025 Score=59.96 Aligned_cols=145 Identities=13% Similarity=0.145 Sum_probs=95.9
Q ss_pred HHHHhccC-CCCcEEEEEeec--Ch--HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661 15 VVDALRPV-TDLPLDVHLMIV--EP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 89 (190)
Q Consensus 15 ~v~~i~~~-~~~~i~~hlmv~--dp--~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~ 89 (190)
.++++|+. +++|+-+-|+.. +| .+.++.+.+.++..|+++.-. +.. ++.+++.|+++...+ ++++.
T Consensus 45 ~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~-----P~~-~~~lk~~Gi~v~~~v---~s~~~ 115 (320)
T cd04743 45 LLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGR-----PDQ-ARALEAIGISTYLHV---PSPGL 115 (320)
T ss_pred HHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCC-----hHH-HHHHHHCCCEEEEEe---CCHHH
Confidence 34455664 789999999764 33 356788899999999998642 333 588999999987555 35555
Q ss_pred HHHhhc-ccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHh-----hcCCCCeEEEeCCCC-cccHHHHHHcCC----
Q 029661 90 IECVLD-VVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCL-----EKGVNPWIEVDGGVG-PKNAYKVIEAGA---- 157 (190)
Q Consensus 90 ~~~~~~-~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~-----~~~~~~~i~vdGGI~-~e~~~~~~~aGa---- 157 (190)
.+...+ .+|.|++-+.+.|.- |. -.++..+.++.+.+. ....++++.+.|||. -..+..+...||
T Consensus 116 A~~a~~~GaD~vVaqG~EAGGH~G~---~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~ 192 (320)
T cd04743 116 LKQFLENGARKFIFEGRECGGHVGP---RSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAE 192 (320)
T ss_pred HHHHHHcCCCEEEEecCcCcCCCCC---CCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccc
Confidence 555554 499999999887643 31 111222233222221 112358899999998 466677777887
Q ss_pred ----CEEEEcccc-cCCCC
Q 029661 158 ----NALVAGSAV-FGAKD 171 (190)
Q Consensus 158 ----d~~VvGsaI-~~~~d 171 (190)
+.+.+||.. +..+.
T Consensus 193 ~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 193 RGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred cccccEEEEccHHhcchhh
Confidence 899999874 44343
No 166
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.03 E-value=4.7e-05 Score=61.23 Aligned_cols=134 Identities=18% Similarity=0.162 Sum_probs=81.3
Q ss_pred HHHHHHc-CCCEEEEcccCCC---cchHHHHHHHHHH---hCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCC
Q 029661 40 VPDFIKA-GADIVSVHCEQSS---TIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG 111 (190)
Q Consensus 40 i~~~~~~-Gad~v~vh~e~~~---~~~~~~~i~~i~~---~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~g 111 (190)
.+.+.++ |-|||=+-.-..+ ..++.+++++++. .|..+-.-++++ .-..+++.+ .+..|+-++...|. |
T Consensus 82 A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D--~v~akrL~d~GcaavMPlgsPIGS-g 158 (247)
T PF05690_consen 82 ARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDD--PVLAKRLEDAGCAAVMPLGSPIGS-G 158 (247)
T ss_dssp HHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEBEEBSSSTTT--
T ss_pred HHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCC--HHHHHHHHHCCCCEEEeccccccc-C
Confidence 4445666 6788877432101 1345667776665 688777777652 223344333 25666666666674 4
Q ss_pred cccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 112 QSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 112 q~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
|-.. +. .|+.+++.. ++++.||+||. +.++.+..+.|+|.+-+-|+|.++.||...++.++..++
T Consensus 159 ~Gi~n~~---~l~~i~~~~-----~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 159 RGIQNPY---NLRIIIERA-----DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp --SSTHH---HHHHHHHHG-----SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred cCCCCHH---HHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 4332 33 345555443 47899999999 799999999999999999999999999999999987553
No 167
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=98.03 E-value=0.00049 Score=58.38 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=91.2
Q ss_pred CcEEEEEeecChHHHHH---HHHHcCCCEEEEcccCCC---------------cchHHHHHHHHHHh-CCcEEEEEc---
Q 029661 25 LPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDL-GAKAGVVLN--- 82 (190)
Q Consensus 25 ~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~~~---------------~~~~~~~i~~i~~~-g~~~g~~i~--- 82 (190)
.++.+.+.-+||+.+.+ .+.+.|+|.|-+..-+.. .+-+.++++.+++. ++.+++=+.
T Consensus 65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~ 144 (321)
T PRK10415 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW 144 (321)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc
Confidence 57789999999988744 346789999999755410 12355667777653 556666553
Q ss_pred -CCC-CHHHHHHhhc--ccceEEEEeeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH-c
Q 029661 83 -PAT-SLSAIECVLD--VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-A 155 (190)
Q Consensus 83 -p~t-~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~-a 155 (190)
++. ....+.+.++ .+|.|.+.+ ....|.+. +..++.++++++.. +++|..-|||+ ++++.++.+ .
T Consensus 145 ~~~~~~~~~~a~~le~~G~d~i~vh~---rt~~~~~~G~a~~~~i~~ik~~~-----~iPVI~nGgI~s~~da~~~l~~~ 216 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQALTIHG---RTRACLFNGEAEYDSIRAVKQKV-----SIPVIANGDITDPLKARAVLDYT 216 (321)
T ss_pred cCCcchHHHHHHHHHHhCCCEEEEec---CccccccCCCcChHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHhcc
Confidence 221 2222323332 278886543 33223222 23466677776643 47899999996 899999986 6
Q ss_pred CCCEEEEcccccCCCCHH
Q 029661 156 GANALVAGSAVFGAKDYA 173 (190)
Q Consensus 156 Gad~~VvGsaI~~~~dp~ 173 (190)
|+|++.+||+++..+..-
T Consensus 217 gadgVmiGR~~l~nP~if 234 (321)
T PRK10415 217 GADALMIGRAAQGRPWIF 234 (321)
T ss_pred CCCEEEEChHhhcCChHH
Confidence 999999999998765433
No 168
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=98.02 E-value=9.8e-05 Score=58.54 Aligned_cols=135 Identities=20% Similarity=0.283 Sum_probs=74.3
Q ss_pred HHHHHHhccCCCCcEEEEEeecC-h-------H------HHHHHHHHcCCCEEEEcccCCC--c--chHHHHHHHHHHhC
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVE-P-------E------QRVPDFIKAGADIVSVHCEQSS--T--IHLHRTLNQIKDLG 74 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~d-p-------~------~~i~~~~~~Gad~v~vh~e~~~--~--~~~~~~i~~i~~~g 74 (190)
+..++.+++..++|+.+ |+.. . . +-++.+.++|+|++.|..-..+ . +...++++.++ |
T Consensus 39 ~g~i~~~~~~~~ipv~v--MIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~ 114 (201)
T PF03932_consen 39 LGLIRQAREAVDIPVHV--MIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG--G 114 (201)
T ss_dssp HHHHHHHHHHTTSEEEE--E--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT--T
T ss_pred HHHHHHHHhhcCCceEE--EECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC--C
Confidence 46788888767777666 7752 1 1 2356789999999999864311 1 12334444443 5
Q ss_pred CcEEE--EEcCC-CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHH
Q 029661 75 AKAGV--VLNPA-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 150 (190)
Q Consensus 75 ~~~g~--~i~p~-t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~ 150 (190)
+.+-+ ++... .+.+.++.+++. ++.|+- -| |..-..+.++.|+++.+.. +..+.|.+.||||++|++
T Consensus 115 ~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLT----SG--g~~~a~~g~~~L~~lv~~a---~~~i~Im~GgGv~~~nv~ 185 (201)
T PF03932_consen 115 MPVTFHRAFDEVPDPEEALEQLIELGFDRVLT----SG--GAPTALEGIENLKELVEQA---KGRIEIMPGGGVRAENVP 185 (201)
T ss_dssp SEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEE----ST--TSSSTTTCHHHHHHHHHHH---TTSSEEEEESS--TTTHH
T ss_pred CeEEEeCcHHHhCCHHHHHHHHHhcCCCEEEC----CC--CCCCHHHHHHHHHHHHHHc---CCCcEEEecCCCCHHHHH
Confidence 55544 22222 234455555443 777762 12 2222334456666555443 345789999999999999
Q ss_pred HHHH-cCCCEE
Q 029661 151 KVIE-AGANAL 160 (190)
Q Consensus 151 ~~~~-aGad~~ 160 (190)
.+.+ .|+.-+
T Consensus 186 ~l~~~tg~~~~ 196 (201)
T PF03932_consen 186 ELVEETGVREI 196 (201)
T ss_dssp HHHHHHT-SEE
T ss_pred HHHHhhCCeEE
Confidence 9987 888765
No 169
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=98.02 E-value=1.9e-05 Score=64.51 Aligned_cols=153 Identities=21% Similarity=0.266 Sum_probs=100.5
Q ss_pred HHHHhcc-C-CCCcEEEEEeecC---h-------HHHHHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCc
Q 029661 15 VVDALRP-V-TDLPLDVHLMIVE---P-------EQRVPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAK 76 (190)
Q Consensus 15 ~v~~i~~-~-~~~~i~~hlmv~d---p-------~~~i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~ 76 (190)
+++.... + .++|+.+||=-++ | -..++.+..+|||.|.+|.--++ .+.+.++.+.++++|+-
T Consensus 66 ~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp 145 (265)
T COG1830 66 IARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMP 145 (265)
T ss_pred HHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCc
Confidence 4444443 3 3789999886652 1 12478889999999999843222 23466778888999999
Q ss_pred EEEEEcCCCCHH-----HHHHhhc---------ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC
Q 029661 77 AGVVLNPATSLS-----AIECVLD---------VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 142 (190)
Q Consensus 77 ~g~~i~p~t~~~-----~~~~~~~---------~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG 142 (190)
+.+..-|-.+.- .-..+.. .+|.|=. -+|| ..+..+++-+.++ +++.+.|
T Consensus 146 ~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~--~ytg---------~~e~F~~vv~~~~-----vpVviaG 209 (265)
T COG1830 146 LVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT--KYTG---------DPESFRRVVAACG-----VPVVIAG 209 (265)
T ss_pred eEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee--cCCC---------ChHHHHHHHHhCC-----CCEEEeC
Confidence 988776654421 0011111 1455521 1222 1134455555443 6888999
Q ss_pred CCCcc-------cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhh
Q 029661 143 GVGPK-------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 183 (190)
Q Consensus 143 GI~~e-------~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~ 183 (190)
|=+.+ -...++++||-++++||.||++++|+..++.+....
T Consensus 210 G~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Iv 257 (265)
T COG1830 210 GPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIV 257 (265)
T ss_pred CCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHh
Confidence 98873 455778899999999999999999999888887653
No 170
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=97.99 E-value=0.00013 Score=57.67 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=88.1
Q ss_pred CCHHHHHHhccCCCCcEEEEEeec-ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHH-
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIV-EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS- 88 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~-dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~- 88 (190)
..++..++|.+......+. ..+. ++.+..+.+.+++.|+|-+|... ..++++.++ .+.++.-++.+....+
T Consensus 35 v~~~~a~~l~~~~~~~~Vg-Vf~~~~~~~I~~~~~~~~ld~vQLHG~e-----~~e~~~~l~-~~~~vi~~~~v~~~~~~ 107 (197)
T PF00697_consen 35 VSPDQARELVSAVPPKIVG-VFVNQSPEEILEIVEELGLDVVQLHGDE-----SPEYIKLLR-AGLPVIKAIHVDKDIDL 107 (197)
T ss_dssp --HHHHHHHHCCSSSSEEE-EESSS-HHHHHHHHHHCTESEEEE-SGG------HHHHHHHH-TTSEEEEEEEESSCHSC
T ss_pred cCHHHHHHHHHhcCCCEEE-EEcCCCHHHHHHHHHHcCCCEEEECCCC-----CHHHHHHhh-cCceEEEEEEeCCccch
Confidence 4677888887653322333 3444 55667788899999999999863 334555555 5777777777665443
Q ss_pred --HHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH-cCCCEEEEccc
Q 029661 89 --AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSA 165 (190)
Q Consensus 89 --~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~-aGad~~VvGsa 165 (190)
.+..+ ..+|++++= ...|.+|+.|....+.++.+... ..++.+.||+|++|+.++++ .++.++=+-|.
T Consensus 108 ~~~~~~~-~~~d~~LlD-~~~GgtG~~~dw~~~~~~~~~~~-------~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSG 178 (197)
T PF00697_consen 108 LDYLERY-ESVDYFLLD-SGSGGTGKTFDWSLLKKIVESYS-------PKPVILAGGLNPENVREAIRQVRPYGVDVSSG 178 (197)
T ss_dssp CHHCHCS-TT-SEEEEE-SSSTSSSS---GGGGCCCHHT-G-------TSTEEEESS--TTTHHHHHHHC--SEEEESGG
T ss_pred HHHHHhc-ccccEEeEc-cCCCcCCcccCHHHhhhhhhhcc-------cCcEEEEcCCChHHHHHHHHhcCceEEEeCCc
Confidence 33332 234888764 33466788888777665544221 25688999999999999988 88888888887
Q ss_pred ccCC---CCHHH
Q 029661 166 VFGA---KDYAE 174 (190)
Q Consensus 166 I~~~---~dp~~ 174 (190)
+=.+ .|++.
T Consensus 179 vE~~pG~KD~~k 190 (197)
T PF00697_consen 179 VETSPGVKDPEK 190 (197)
T ss_dssp GEEETTEE-HHH
T ss_pred cccCCCCCCHHH
Confidence 7443 35543
No 171
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.99 E-value=8.9e-05 Score=58.75 Aligned_cols=159 Identities=18% Similarity=0.276 Sum_probs=99.7
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHH--HHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPD--FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 89 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~--~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~ 89 (190)
-|..|++|++...+|+.+..- .+.|++. +-..|.|+|- |+. .-++......|.+++.++=+.+.-..--|.
T Consensus 66 DP~mIKei~~aVsiPVMAk~R---iGHFVEAQIlE~l~vDYiD---ESE-vlt~AD~~hhI~KhnFkvPFvCG~rdlGEA 138 (296)
T KOG1606|consen 66 DPRMIKEIKNAVSIPVMAKVR---IGHFVEAQILEALGVDYID---ESE-VLTPADWDHHIEKHNFKVPFVCGCRDLGEA 138 (296)
T ss_pred CHHHHHHHHHhccchhhhhhh---hhhhhHHHHHHHhccCccc---hhh-hcccccccchhhhhcCcCceeeccccHHHH
Confidence 578999999877778777443 3447653 5667888873 321 234555667788888888777766555677
Q ss_pred HHHhhcccceEEEEeeecCCCCcccchhhHHHHHH-------HHHHH---------------------hhcCCCCeEE--
Q 029661 90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD-------LRRMC---------------------LEKGVNPWIE-- 139 (190)
Q Consensus 90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~-------~~~~~---------------------~~~~~~~~i~-- 139 (190)
++++.+.+-.|-.- -+.|++. ..++.+.++. ++++- .+.+ .+++.
T Consensus 139 LRRI~EGAAMIRtk-GeagTG~---v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~G-rlPVV~F 213 (296)
T KOG1606|consen 139 LRRIREGAAMIRTK-GEAGTGD---VSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLG-RLPVVNF 213 (296)
T ss_pred HHHHhhchhhheec-cccCCCc---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcC-CCceEEe
Confidence 77776665444211 1223322 2222222221 11110 0111 12222
Q ss_pred EeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182 (190)
Q Consensus 140 vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~ 182 (190)
..||+. |.....+.+.|.|++-+||.||++.||...++.+-+.
T Consensus 214 AaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqA 257 (296)
T KOG1606|consen 214 AAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQA 257 (296)
T ss_pred cccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHHH
Confidence 678877 8899999999999999999999999999888877654
No 172
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=97.96 E-value=0.00011 Score=61.67 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHh----CCcEEEEEcCCCCHHHHHHhhc-------ccceEEEEee--ecCCCCcccchhhHHHHHHHHHH
Q 029661 62 HLHRTLNQIKDL----GAKAGVVLNPATSLSAIECVLD-------VVDLVLIMSV--NPGFGGQSFIESQVKKISDLRRM 128 (190)
Q Consensus 62 ~~~~~i~~i~~~----g~~~g~~i~p~t~~~~~~~~~~-------~~d~i~~m~v--~pG~~gq~~~~~~~~ki~~~~~~ 128 (190)
.+.+.++.+|++ +...-+.+..+| ++.+.+.++ .+|.|++=-. .|.- .....+.+++..++
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv~t-leea~ea~~~~~~~~agaDiImLDnm~~~~~~-----~~~~~e~l~~av~~ 258 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVETRT-LEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN-----GDVDVSMLKEAVEL 258 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEECC-HHHHHHHHHhcccccCCCCEEEeCCCcccccc-----cCCCHHHHHHHHHh
Confidence 467788888872 121224444444 555666555 3888876111 1211 11245556666665
Q ss_pred HhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 129 CLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 129 ~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
+++ ..++++.||||++|+.++.+.|+|++++|+--.+++
T Consensus 259 ~~~---~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa~ 297 (308)
T PLN02716 259 ING---RFETEASGNVTLDTVHKIGQTGVTYISSGALTHSVK 297 (308)
T ss_pred hCC---CceEEEECCCCHHHHHHHHHcCCCEEEeCccccCCC
Confidence 543 357999999999999999999999999998666543
No 173
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.95 E-value=0.00027 Score=60.33 Aligned_cols=162 Identities=21% Similarity=0.242 Sum_probs=102.3
Q ss_pred cccCcCCC---CHH-HHHHhccC-CCCcEEEEEeec-------ChHHHHHHHHHcC--CCEEEEcccCC---------Cc
Q 029661 4 RFVPNITI---GPL-VVDALRPV-TDLPLDVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCEQS---------ST 60 (190)
Q Consensus 4 ~fvpn~~~---G~~-~v~~i~~~-~~~~i~~hlmv~-------dp~~~i~~~~~~G--ad~v~vh~e~~---------~~ 60 (190)
-+.+.+.| |.+ +++++++. .+.++-+-+..+ .+++|.+.+..++ ||++.+-..+. ..
T Consensus 109 ~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~ 188 (335)
T TIGR01036 109 ALINRMGFNNHGADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYK 188 (335)
T ss_pred ccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCH
Confidence 35566666 443 35556553 456777765433 3578888777777 99998843220 01
Q ss_pred chHHHHHHHHHHh-C-------CcEEEEEcCCCCHHHHHHhhc-----ccceEEEEee---------------ecCCCCc
Q 029661 61 IHLHRTLNQIKDL-G-------AKAGVVLNPATSLSAIECVLD-----VVDLVLIMSV---------------NPGFGGQ 112 (190)
Q Consensus 61 ~~~~~~i~~i~~~-g-------~~~g~~i~p~t~~~~~~~~~~-----~~d~i~~m~v---------------~pG~~gq 112 (190)
+...++++.+++. . +.+.+=++|+.+.+.+..+++ .+|-|.+.-. .-|.+|.
T Consensus 189 ~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~ 268 (335)
T TIGR01036 189 AELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGK 268 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCH
Confidence 2345666666553 1 556666888876333333332 2566553211 1234466
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
...|..++.++++++..+ .+++|..-|||. .+++.+++.+|||.+-+||+++.
T Consensus 269 ~i~p~al~~v~~~~~~~~---~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 269 PLQDKSTEIIRRLYAELQ---GRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 666777777777776543 247898999999 78999999999999999999876
No 174
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.95 E-value=0.0003 Score=57.35 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=96.1
Q ss_pred CcCCCCHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHH
Q 029661 7 PNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIK 71 (190)
Q Consensus 7 pn~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~ 71 (190)
|.+.-..+.++++++. ++.++-+ ++.+-.+.++.+.++|++.|.+..... ..+...+.++.++
T Consensus 48 p~~~~~~~~i~~l~~~~~~~~~~~--l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~ 125 (265)
T cd03174 48 PQMEDDWEVLRAIRKLVPNVKLQA--LVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK 125 (265)
T ss_pred ccCCCHHHHHHHHHhccCCcEEEE--EccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4445566788888875 3555555 444446689999999999999976541 1245678888899
Q ss_pred HhCCcEEEEEcCC----CCHHHHHHhhc----c-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC
Q 029661 72 DLGAKAGVVLNPA----TSLSAIECVLD----V-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 142 (190)
Q Consensus 72 ~~g~~~g~~i~p~----t~~~~~~~~~~----~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG 142 (190)
++|+++.+.+... ++.+.+.+++. . +|.|.+ +.+.|...+.+..+.++.+++..++ .++.+=+
T Consensus 126 ~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~v~~li~~l~~~~~~----~~~~~H~ 197 (265)
T cd03174 126 EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL----KDTVGLATPEEVAELVKALREALPD----VPLGLHT 197 (265)
T ss_pred HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe----chhcCCcCHHHHHHHHHHHHHhCCC----CeEEEEe
Confidence 9999998877433 33444444332 2 677654 2334554455566667777776542 5666655
Q ss_pred ----CCCcccHHHHHHcCCCEE
Q 029661 143 ----GVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 143 ----GI~~e~~~~~~~aGad~~ 160 (190)
|....|.-..+++||+.+
T Consensus 198 Hn~~gla~an~laA~~aG~~~i 219 (265)
T cd03174 198 HNTLGLAVANSLAALEAGADRV 219 (265)
T ss_pred CCCCChHHHHHHHHHHcCCCEE
Confidence 666678888899999976
No 175
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.92 E-value=0.00032 Score=62.68 Aligned_cols=137 Identities=20% Similarity=0.307 Sum_probs=85.1
Q ss_pred EEeecCh--HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeee
Q 029661 30 HLMIVEP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVN 106 (190)
Q Consensus 30 hlmv~dp--~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~ 106 (190)
..|..+| .+.++.+.++|+|.+.+-...+........++.+++..-.+-+.+..-...+..+.+.+ .+|.|-+ +.-
T Consensus 221 aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~v-g~g 299 (486)
T PRK05567 221 AAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKV-GIG 299 (486)
T ss_pred eecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEE-CCC
Confidence 3444444 44577899999998876221111335667788888764222222232334444555554 4888864 333
Q ss_pred cCC--CCcc---cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 107 PGF--GGQS---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 107 pG~--~gq~---~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
||. .++. +....++-+.++++...+ .++++.+||||+ +..+.++..+|||.+.+||+|.+.
T Consensus 300 ~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~--~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~ 366 (486)
T PRK05567 300 PGSICTTRIVAGVGVPQITAIADAAEAAKK--YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGT 366 (486)
T ss_pred CCccccceeecCCCcCHHHHHHHHHHHhcc--CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcccccc
Confidence 441 1221 222345566666665432 347899999999 789999999999999999999875
No 176
>PLN02429 triosephosphate isomerase
Probab=97.91 E-value=0.00038 Score=58.69 Aligned_cols=138 Identities=15% Similarity=0.248 Sum_probs=86.2
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HH----HHHHhhcccce--E
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDVVDL--V 100 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~----~~~~~~~~~d~--i 100 (190)
.+.+.++|++++++ |.|- ..++.+.+-++.+.++|+.+.+.+.-... .+ .++..++.++. =
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~ 219 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDN 219 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccc
Confidence 67899999999999 4331 01344555555699999999888873221 11 23333433321 1
Q ss_pred EEEeeec----CCCCcccchhhHHHH-HHHHHHHhh-----cCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccCC
Q 029661 101 LIMSVNP----GFGGQSFIESQVKKI-SDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGA 169 (190)
Q Consensus 101 ~~m~v~p----G~~gq~~~~~~~~ki-~~~~~~~~~-----~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~~ 169 (190)
++..-+| | +|+.-.|+-.+.+ ..+|+.+.+ ...+++|..+|+|+++|+.++ .+.++|++-+|++..++
T Consensus 220 ivIAYEPvWAIG-TGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~ 298 (315)
T PLN02429 220 IVVAYEPVWAIG-TGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKG 298 (315)
T ss_pred eEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecH
Confidence 2345566 5 3544444443332 233433322 124578999999999999866 47889999999999887
Q ss_pred CCHHHHHHH
Q 029661 170 KDYAEAIKG 178 (190)
Q Consensus 170 ~dp~~~~~~ 178 (190)
+++.+-++.
T Consensus 299 ~~F~~Ii~~ 307 (315)
T PLN02429 299 PEFATIVNS 307 (315)
T ss_pred HHHHHHHHH
Confidence 777665554
No 177
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.89 E-value=5.4e-05 Score=62.21 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEE
Q 029661 83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV 161 (190)
Q Consensus 83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~V 161 (190)
...|++.++.|.+. +..+-+.-... |..- -.+-|+++++ . +.+|++.|||+.++++.+.++|||-+|
T Consensus 42 ~~dP~~~A~~~~~~Ga~~lHvVDLdg---g~~~---n~~~i~~i~~-~-----~~~vqvGGGIR~e~i~~~l~~Ga~rVi 109 (262)
T PLN02446 42 DKSAAEFAEMYKRDGLTGGHVIMLGA---DDAS---LAAALEALRA-Y-----PGGLQVGGGVNSENAMSYLDAGASHVI 109 (262)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCC---CCcc---cHHHHHHHHh-C-----CCCEEEeCCccHHHHHHHHHcCCCEEE
Confidence 35678877777654 66665533332 2222 2444555555 3 268999999999999999999999999
Q ss_pred EcccccCCC--CHHHHHHHHHHhhcccc
Q 029661 162 AGSAVFGAK--DYAEAIKGIKTSKRPQA 187 (190)
Q Consensus 162 vGsaI~~~~--dp~~~~~~l~~~~~~~~ 187 (190)
+||+.++.+ ||. .++++-+...+++
T Consensus 110 igT~Av~~~~~~p~-~v~~~~~~~G~~~ 136 (262)
T PLN02446 110 VTSYVFRDGQIDLE-RLKDLVRLVGKQR 136 (262)
T ss_pred EchHHHhCCCCCHH-HHHHHHHHhCCCC
Confidence 999988841 353 4444444444433
No 178
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.87 E-value=0.00047 Score=59.06 Aligned_cols=138 Identities=20% Similarity=0.310 Sum_probs=83.3
Q ss_pred cEEEEEeecC-hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEE-EEEcCCCCHHHHHHhhc-ccceEEE
Q 029661 26 PLDVHLMIVE-PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG-VVLNPATSLSAIECVLD-VVDLVLI 102 (190)
Q Consensus 26 ~i~~hlmv~d-p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g-~~i~p~t~~~~~~~~~~-~~d~i~~ 102 (190)
.+-+-+-+.+ -.+.++.+.++|+|.+.+..-.+..+...+.++.+|+.--++- ++=|..|. +-.+.+++ .+|.|-+
T Consensus 98 ~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~-e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 98 LVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTY-EGAKDLIDAGADAVKV 176 (352)
T ss_dssp CEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SH-HHHHHHHHTT-SEEEE
T ss_pred eEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCH-HHHHHHHHcCCCEEEE
Confidence 3344333332 3456788999999999995443334566778888888644443 34444444 44555554 4888765
Q ss_pred EeeecCCC-------CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 103 MSVNPGFG-------GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 103 m~v~pG~~-------gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
++=||.- |-- .| .+.-+.+..+...+ +..+|..||||+ ..++.+.+.+|||.+-+||.+-..
T Consensus 177 -GiGpGsiCtTr~v~GvG-~P-Q~tAv~~~a~~a~~--~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt 246 (352)
T PF00478_consen 177 -GIGPGSICTTREVTGVG-VP-QLTAVYECAEAARD--YGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 246 (352)
T ss_dssp -SSSSSTTBHHHHHHSBS-CT-HHHHHHHHHHHHHC--TTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTB
T ss_pred -eccCCcccccccccccC-Cc-HHHHHHHHHHHhhh--ccCceeecCCcCcccceeeeeeecccceeechhhccC
Confidence 4444421 100 12 23334555554433 458999999999 689999999999999999988764
No 179
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.87 E-value=0.00046 Score=61.91 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh-CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCC--C-C-
Q 029661 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--G-G- 111 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~-g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~--~-g- 111 (190)
..++.+.++|+|.+.+-.-.+......+.++++|+. +..+-+....-...+..+.+++ .+|.|.+ ++.||. . .
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~v-g~g~Gs~c~tr~ 323 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKV-GIGGGSICITRE 323 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEE-CCCCCcCccccc
Confidence 456778999999998742111112345678888874 3223332221223344555554 5898876 888881 1 1
Q ss_pred cc-cchhhHHHHHHHHH----HHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 112 QS-FIESQVKKISDLRR----MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 112 q~-~~~~~~~ki~~~~~----~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
|. .....+.-+.++.+ +..+.+.+.+|..||||+ ..++.+++.+|||.+-+||.+-.
T Consensus 324 ~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag 386 (502)
T PRK07107 324 QKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR 386 (502)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence 11 11122333333333 334445457899999999 57888899999999999998865
No 180
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.87 E-value=0.00096 Score=56.87 Aligned_cols=145 Identities=14% Similarity=0.189 Sum_probs=91.0
Q ss_pred CCCcEEEEEeecChHHHHHH---HHHcCCCEEEEcccCC---------------CcchHHHHHHHHHHh-CCcEEEEEcC
Q 029661 23 TDLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP 83 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~vh~e~~---------------~~~~~~~~i~~i~~~-g~~~g~~i~p 83 (190)
.+.|+.+.|.-.||+.+.+. +.++|+|+|=+|.-+. ..+-+.++++.+++. ++.+.+=+..
T Consensus 63 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~ 142 (333)
T PRK11815 63 EEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRI 142 (333)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEe
Confidence 45799999999999887543 5678999999985431 012245777777774 5554442221
Q ss_pred C----CCHHHH---HHhhc--ccceEEEEeeec---CCCCc---ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cc
Q 029661 84 A----TSLSAI---ECVLD--VVDLVLIMSVNP---GFGGQ---SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK 147 (190)
Q Consensus 84 ~----t~~~~~---~~~~~--~~d~i~~m~v~p---G~~gq---~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e 147 (190)
. .+.+.. .+.+. .+|.+.+.+... |+.|. ...|..++.++++++.. .++++..-|||+ ++
T Consensus 143 g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~----~~iPVI~nGgI~s~e 218 (333)
T PRK11815 143 GIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF----PHLTIEINGGIKTLE 218 (333)
T ss_pred eeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC----CCCeEEEECCcCCHH
Confidence 1 112222 22222 278886644321 22221 12234466677776543 247899999997 79
Q ss_pred cHHHHHHcCCCEEEEcccccCCCCH
Q 029661 148 NAYKVIEAGANALVAGSAVFGAKDY 172 (190)
Q Consensus 148 ~~~~~~~aGad~~VvGsaI~~~~dp 172 (190)
++.++.+ |+|.+.+|++++..+..
T Consensus 219 da~~~l~-~aDgVmIGRa~l~nP~~ 242 (333)
T PRK11815 219 EAKEHLQ-HVDGVMIGRAAYHNPYL 242 (333)
T ss_pred HHHHHHh-cCCEEEEcHHHHhCCHH
Confidence 9999886 79999999999876533
No 181
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.86 E-value=0.00016 Score=60.42 Aligned_cols=136 Identities=20% Similarity=0.234 Sum_probs=83.0
Q ss_pred HHHHhccCCCCcEEEEEeecChH-HH-HHHHHHcCC---------CEEEE---cccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPE-QR-VPDFIKAGA---------DIVSV---HCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~-~~-i~~~~~~Ga---------d~v~v---h~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
+++.+. .++..+-.-=|+. |+ +. .+.+..+|- |.|.+ |... ...+.+.++.+|++....-+.
T Consensus 134 ~V~~~~-~~~~~I~dTRKT~-PGlR~lekyAV~~GGG~nHR~gLsD~vLIkdNHi~~--~G~i~~av~~~r~~~~~~kIe 209 (294)
T PRK06978 134 YVDRIA-GTRARILDTRKTL-PGLRLAQKYAVRVGGGENQRLALYDGILIKENHIAA--AGGVGAALDAAFALNAGVPVQ 209 (294)
T ss_pred HHHHhh-CCCcEEEecCCCC-CchhHHHHHHHHhcCCcCcCCCCCceEEEeHHHHHH--hCCHHHHHHHHHHhCCCCcEE
Confidence 444442 2444444433444 64 33 444566653 34554 4332 234778888888864322244
Q ss_pred EcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCE
Q 029661 81 LNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA 159 (190)
Q Consensus 81 i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~ 159 (190)
+..+| ++.+++.++ .+|.|++ +. |.|+.+ +++.+++++ +..+++.||||++|+.++.+.|+|+
T Consensus 210 VEvet-leea~eA~~aGaDiImL-------Dn--mspe~l---~~av~~~~~---~~~lEaSGGIt~~ni~~yA~tGVD~ 273 (294)
T PRK06978 210 IEVET-LAQLETALAHGAQSVLL-------DN--FTLDMM---REAVRVTAG---RAVLEVSGGVNFDTVRAFAETGVDR 273 (294)
T ss_pred EEcCC-HHHHHHHHHcCCCEEEE-------CC--CCHHHH---HHHHHhhcC---CeEEEEECCCCHHHHHHHHhcCCCE
Confidence 55444 555566555 4898876 22 444444 444444432 4689999999999999999999999
Q ss_pred EEEcccccCCC
Q 029661 160 LVAGSAVFGAK 170 (190)
Q Consensus 160 ~VvGsaI~~~~ 170 (190)
+.+|+...+++
T Consensus 274 IS~galthsa~ 284 (294)
T PRK06978 274 ISIGALTKDVR 284 (294)
T ss_pred EEeCccccCCc
Confidence 99998777664
No 182
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.86 E-value=0.0017 Score=56.41 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=99.7
Q ss_pred HHHhcc-CCCCcEEEEEee-cChHHHH---HHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHh-CC
Q 029661 16 VDALRP-VTDLPLDVHLMI-VEPEQRV---PDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDL-GA 75 (190)
Q Consensus 16 v~~i~~-~~~~~i~~hlmv-~dp~~~i---~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~-g~ 75 (190)
++.+++ +++.|+.+-+|- .++++|. +.+.++|||++.+-..+. ..+.+.++++.+|+. .+
T Consensus 104 i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~i 183 (385)
T PLN02495 104 FKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATV 183 (385)
T ss_pred HHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcC
Confidence 344443 357899999988 6787664 456788999999843210 112355667777775 45
Q ss_pred cEEEEEcCCC-CHHHHHHhh-c-ccceEEE-------Eee-----e--c---------CCCCcccchhhHHHHHHHHHHH
Q 029661 76 KAGVVLNPAT-SLSAIECVL-D-VVDLVLI-------MSV-----N--P---------GFGGQSFIESQVKKISDLRRMC 129 (190)
Q Consensus 76 ~~g~~i~p~t-~~~~~~~~~-~-~~d~i~~-------m~v-----~--p---------G~~gq~~~~~~~~ki~~~~~~~ 129 (190)
.+.+=+.|+. .+..+.+.+ + .+|-|.+ |.+ . | |.+|....|..+..+.++++..
T Consensus 184 Pv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~ 263 (385)
T PLN02495 184 PVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMM 263 (385)
T ss_pred ceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 5556688874 444333322 1 2454432 222 1 1 1234445577777787888776
Q ss_pred hhc-CCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 130 LEK-GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 130 ~~~-~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
... ..+++|..-|||. .+.+.+++.+||+.+=++|+++..
T Consensus 264 ~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~ 305 (385)
T PLN02495 264 KSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMH 305 (385)
T ss_pred hhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeec
Confidence 422 2247899999999 799999999999999999998864
No 183
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.85 E-value=0.00062 Score=58.50 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=94.1
Q ss_pred HHHHhccC-CCCcEEEEEeecC-----hHHHHHHHHHcCCCEEEEcccC----C---CcchHH---HHHHHHHHh-CCcE
Q 029661 15 VVDALRPV-TDLPLDVHLMIVE-----PEQRVPDFIKAGADIVSVHCEQ----S---STIHLH---RTLNQIKDL-GAKA 77 (190)
Q Consensus 15 ~v~~i~~~-~~~~i~~hlmv~d-----p~~~i~~~~~~Gad~v~vh~e~----~---~~~~~~---~~i~~i~~~-g~~~ 77 (190)
..+.+|+. ++.|+.+-|-+.. ++...+.....+||.+-+|... . ...+.. +.++.+++. ++.+
T Consensus 110 ~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPV 189 (352)
T PRK05437 110 SFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPV 189 (352)
T ss_pred HHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCE
Confidence 34455665 5788888665532 4555566667789999998632 0 112333 667777775 6666
Q ss_pred EEEEc-CCCCHHHHHHhhc-ccceEEEEeeecCCCC------c-----------ccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 78 GVVLN-PATSLSAIECVLD-VVDLVLIMSVNPGFGG------Q-----------SFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 78 g~~i~-p~t~~~~~~~~~~-~~d~i~~m~v~pG~~g------q-----------~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
++=.. ..++.+..+.+.+ .+|.|.+-+ ..|++. . .+...+.+.|.++++.. .+++|
T Consensus 190 ivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~----~~ipv 264 (352)
T PRK05437 190 IVKEVGFGISKETAKRLADAGVKAIDVAG-AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL----PDLPI 264 (352)
T ss_pred EEEeCCCCCcHHHHHHHHHcCCCEEEECC-CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc----CCCeE
Confidence 65333 2345566665544 489988743 223110 0 11222445555555542 24789
Q ss_pred EEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 139 EVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 139 ~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.++|||+ ...+.+++..|||.+-+|++++.+
T Consensus 265 ia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 265 IASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 9999999 689999999999999999997754
No 184
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=97.85 E-value=0.00082 Score=54.26 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=109.8
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEE
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
+-++.|++....++..- .+--.++++.+.+...+.+|+-+|.- ..+.+..+++.+++.|+++.++
T Consensus 52 ~Dv~~l~~~~~~~lNlE--~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLF 129 (237)
T TIGR00559 52 RDVYDLKEALTTPFNIE--MAPTEEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLF 129 (237)
T ss_pred HHHHHHHHHcCCCEEec--cCCCHHHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEE
Confidence 34566776544455543 22234688999999999999976641 0124788999999999999999
Q ss_pred EcCCCC-HHHHHHhhcccceEEEEeeecCCCCcccc----hhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc
Q 029661 81 LNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSFI----ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA 155 (190)
Q Consensus 81 i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~~----~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a 155 (190)
+.|+.. ++...++ .+|.|-+. .|.....|. ..-++++...-++..+. .+.+.++-|+|.+|++.+.+.
T Consensus 130 iDP~~~qi~~A~~~--GAd~VELh---TG~YA~a~~~~~~~~el~~i~~aa~~A~~l--GL~VnAGHgLny~Nv~~i~~~ 202 (237)
T TIGR00559 130 IDADKDQISAAAEV--GADRIEIH---TGPYANAYNKKEMAEELQRIVKASVHAHSL--GLKVNAGHGLNYHNVKYFAEI 202 (237)
T ss_pred eCCCHHHHHHHHHh--CcCEEEEe---chhhhcCCCchhHHHHHHHHHHHHHHHHHc--CCEEecCCCCCHHhHHHHHhC
Confidence 998633 2333332 58999763 343322222 22366666666665544 467889999999999988665
Q ss_pred -C-CCEEEEcccccCC---CCHHHHHHHHHHhhc
Q 029661 156 -G-ANALVAGSAVFGA---KDYAEAIKGIKTSKR 184 (190)
Q Consensus 156 -G-ad~~VvGsaI~~~---~dp~~~~~~l~~~~~ 184 (190)
+ .+-+-+|-+|+.. --..++++++++.++
T Consensus 203 ~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~ 236 (237)
T TIGR00559 203 LPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK 236 (237)
T ss_pred CCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3 5888899887753 356788888887765
No 185
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.83 E-value=0.001 Score=56.26 Aligned_cols=142 Identities=11% Similarity=0.132 Sum_probs=94.0
Q ss_pred CCCcEEEEEeecChHHHHH---HHHHcCCCEEEEcccCC---------------CcchHHHHHHHHHHh---CCcEEEEE
Q 029661 23 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL---GAKAGVVL 81 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~~---------------~~~~~~~~i~~i~~~---g~~~g~~i 81 (190)
.+.|+.+.|.-+||+.+.+ .+.+.|+|.|=+|.-+. ..+-+.++++++++. ++.+.+=+
T Consensus 61 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKi 140 (312)
T PRK10550 61 SGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKV 140 (312)
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 3479999999999988764 46778999999985431 012345667777764 36666655
Q ss_pred cCCCC----HHHHHHhhcc--cceEEEEeeecCCCCcccchh--hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHH
Q 029661 82 NPATS----LSAIECVLDV--VDLVLIMSVNPGFGGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV 152 (190)
Q Consensus 82 ~p~t~----~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~--~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~ 152 (190)
..... ...+.+.++. +|.+. +|+++..|.+... -++.++++++.. ++++..-|||+ ++.+.++
T Consensus 141 R~g~~~~~~~~~~a~~l~~~Gvd~i~---Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-----~iPVi~nGdI~t~~da~~~ 212 (312)
T PRK10550 141 RLGWDSGERKFEIADAVQQAGATELV---VHGRTKEDGYRAEHINWQAIGEIRQRL-----TIPVIANGEIWDWQSAQQC 212 (312)
T ss_pred ECCCCCchHHHHHHHHHHhcCCCEEE---ECCCCCccCCCCCcccHHHHHHHHhhc-----CCcEEEeCCcCCHHHHHHH
Confidence 55422 1122233332 67775 4665555544321 356677776543 47899999996 7899887
Q ss_pred H-HcCCCEEEEcccccCCCCH
Q 029661 153 I-EAGANALVAGSAVFGAKDY 172 (190)
Q Consensus 153 ~-~aGad~~VvGsaI~~~~dp 172 (190)
. ..|+|.+-+||+.+..+..
T Consensus 213 l~~~g~DgVmiGRg~l~nP~l 233 (312)
T PRK10550 213 MAITGCDAVMIGRGALNIPNL 233 (312)
T ss_pred HhccCCCEEEEcHHhHhCcHH
Confidence 6 5899999999998875533
No 186
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=97.83 E-value=0.00085 Score=54.76 Aligned_cols=136 Identities=18% Similarity=0.213 Sum_probs=81.5
Q ss_pred CHHHHHHhccCCCCcEEEEEeec-Ch-------H------HHHHHHHHcCCCEEEEcccCCC----cchHHHHHHHHHHh
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIV-EP-------E------QRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKDL 73 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~-dp-------~------~~i~~~~~~Gad~v~vh~e~~~----~~~~~~~i~~i~~~ 73 (190)
+...++.+++..++|+.+ |+. ++ . +-++.+.++|+|++.|..-... .+...++++.++
T Consensus 39 S~g~i~~~~~~~~ipv~v--MIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~-- 114 (248)
T PRK11572 39 SLGVLKSVRERVTIPVHP--IIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG-- 114 (248)
T ss_pred CHHHHHHHHHhcCCCeEE--EEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc--
Confidence 355788888766777665 774 21 1 2356689999999999765411 122445555553
Q ss_pred CCcEEE--EEcC-CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccH
Q 029661 74 GAKAGV--VLNP-ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 149 (190)
Q Consensus 74 g~~~g~--~i~p-~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~ 149 (190)
++++-+ ++.. ..+.+.++.+++. +|.|+- - +|+.-..+.++.|+++.+... ...|.+.||||++|+
T Consensus 115 ~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILT----S--Gg~~~a~~g~~~L~~lv~~a~----~~~Im~GgGV~~~Nv 184 (248)
T PRK11572 115 PLAVTFHRAFDMCANPLNALKQLADLGVARILT----S--GQQQDAEQGLSLIMELIAASD----GPIIMAGAGVRLSNL 184 (248)
T ss_pred CCceEEechhhccCCHHHHHHHHHHcCCCEEEC----C--CCCCCHHHHHHHHHHHHHhcC----CCEEEeCCCCCHHHH
Confidence 444433 2222 2344555555554 677751 1 232223344555555544432 234999999999999
Q ss_pred HHHHHcCCCEEE
Q 029661 150 YKVIEAGANALV 161 (190)
Q Consensus 150 ~~~~~aGad~~V 161 (190)
.++.+.|+.-+=
T Consensus 185 ~~l~~tG~~~~H 196 (248)
T PRK11572 185 HKFLDAGVREVH 196 (248)
T ss_pred HHHHHcCCCEEe
Confidence 999999998764
No 187
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.82 E-value=0.00024 Score=59.31 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhCC-cEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661 62 HLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 139 (190)
Q Consensus 62 ~~~~~i~~i~~~g~-~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~ 139 (190)
.+.+.++.+|++.. ..-+.+..+ +++.+++.++. +|.|++ +. |.|+.+ +++-+++++ +..++
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv~-tleea~~a~~agaDiImL-------Dn--mspe~l---~~av~~~~~---~~~le 245 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEVE-SLAAAEEAAAAGADIIML-------DN--MSLEQI---EQAITLIAG---RSRIE 245 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEEECC-CHHHHHHHHHcCCCEEEE-------CC--CCHHHH---HHHHHHhcC---ceEEE
Confidence 57788888888632 122444443 44666666654 898875 22 444444 444444432 46899
Q ss_pred EeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 140 VDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 140 vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
+.||||++|++++.+.|+|++++|+-..+++
T Consensus 246 aSGGI~~~ni~~yA~tGVD~Is~galthsa~ 276 (290)
T PRK06559 246 CSGNIDMTTISRFRGLAIDYVSSGSLTHSAK 276 (290)
T ss_pred EECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 9999999999999999999999998666554
No 188
>PRK15492 triosephosphate isomerase; Provisional
Probab=97.81 E-value=0.00037 Score=57.39 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=81.2
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCCH-------HH----HHHhhccc--ce-
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SA----IECVLDVV--DL- 99 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~-------~~----~~~~~~~~--d~- 99 (190)
.+.+.++|++++.+ |.|- ..++.+.+-++.+.++|+.+.+.+.-.... +. ++..+..+ +.
T Consensus 87 a~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~~~~~~~ 166 (260)
T PRK15492 87 PLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQL 166 (260)
T ss_pred HHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhcCCHhhc
Confidence 57899999999999 4331 024456677888999999998888732111 11 11222221 21
Q ss_pred -EEEEeeec----CCCCcccch----hhHHHHHHH-HHHHhhcCCCCeEEEeCCCCcccHHHHH-HcCCCEEEEcccccC
Q 029661 100 -VLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFG 168 (190)
Q Consensus 100 -i~~m~v~p----G~~gq~~~~----~~~~ki~~~-~~~~~~~~~~~~i~vdGGI~~e~~~~~~-~aGad~~VvGsaI~~ 168 (190)
=++.+.+| |++|....+ ++.+.||+. .++..+...+++|..+|+++++|+.++. ....|++-+|++=.+
T Consensus 167 ~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~aSl~ 246 (260)
T PRK15492 167 AKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSAWD 246 (260)
T ss_pred CceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehhhcC
Confidence 12345566 655665444 344445442 3333322345789999999999999884 445999999987555
Q ss_pred CC
Q 029661 169 AK 170 (190)
Q Consensus 169 ~~ 170 (190)
.+
T Consensus 247 ~~ 248 (260)
T PRK15492 247 AD 248 (260)
T ss_pred HH
Confidence 43
No 189
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.81 E-value=0.0024 Score=50.90 Aligned_cols=167 Identities=22% Similarity=0.263 Sum_probs=107.3
Q ss_pred CCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEccc-----CCCcchHHHHHHH---HHHh--CCcEE
Q 029661 9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE-----QSSTIHLHRTLNQ---IKDL--GAKAG 78 (190)
Q Consensus 9 ~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e-----~~~~~~~~~~i~~---i~~~--g~~~g 78 (190)
+.-.|+.|+..|+.+++|+=+ ---+|+.|.+ +.++|||+|-+.-. .+-.-+.+++++. .|+. ..-..
T Consensus 46 IAadp~LV~~~~~~s~lPICV--SaVep~~f~~-aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~Ls 122 (242)
T PF04481_consen 46 IAADPELVKLAKSLSNLPICV--SAVEPELFVA-AVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLS 122 (242)
T ss_pred ecCCHHHHHHHHHhCCCCeEe--ecCCHHHHHH-HHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceE
Confidence 667899999999999999877 3458988764 78899999998621 1111123444444 4443 22223
Q ss_pred EEEcCCCCHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHh-----hcCCCCeEEEeCCCCccc
Q 029661 79 VVLNPATSLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL-----EKGVNPWIEVDGGVGPKN 148 (190)
Q Consensus 79 ~~i~p~t~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~-----~~~~~~~i~vdGGI~~e~ 148 (190)
+.+..--|++.-.++. + .+|+|. .+-|+..+++.+.++..|++.-.-+. .+..+.++--.-|++.=|
T Consensus 123 VTVPHiL~ld~Qv~LA~~L~~~GaDiIQ---TEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT 199 (242)
T PF04481_consen 123 VTVPHILPLDQQVQLAEDLVKAGADIIQ---TEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVT 199 (242)
T ss_pred EecCccccHHHHHHHHHHHHHhCCcEEE---cCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhh
Confidence 3332223343322222 1 378885 35555555555666555544322111 234678899999999999
Q ss_pred HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 149 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
++..+.+||.++=+||+|-+-+|..+.+..+|+
T Consensus 200 ~PmAiaaGAsGVGVGSavn~Ln~~~aMva~vr~ 232 (242)
T PF04481_consen 200 APMAIAAGASGVGVGSAVNRLNDEVAMVAAVRS 232 (242)
T ss_pred HHHHHHcCCcccchhHHhhhcccHHHHHHHHHH
Confidence 999999999999999999998888765554444
No 190
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.81 E-value=0.00037 Score=56.09 Aligned_cols=161 Identities=17% Similarity=0.245 Sum_probs=89.5
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHH--HHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 89 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~--~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~ 89 (190)
.|+.|++|...-.+|+-+..-+-+ |++ .+-..|+|+|- |+. .-++......+.+....+=+++.-..--|.
T Consensus 65 Dp~~i~eim~aVsIPVMAKvRIGH---~~EA~iLealgVD~ID---ESE-VLTPAD~~~Hi~K~~FtVPFVcGarnLgEA 137 (296)
T COG0214 65 DPKMIEEIMDAVSIPVMAKVRIGH---FVEAQILEALGVDMID---ESE-VLTPADEEFHINKWKFTVPFVCGARNLGEA 137 (296)
T ss_pred CHHHHHHHHHhcccceeeeeecch---hHHHHHHHHhCCCccc---ccc-ccCCCchhhhcchhhcccceecCcCcHHHH
Confidence 578889988777788888554444 543 35667888773 321 122333333444544444444333333355
Q ss_pred HHHhhcccceEEEEeeecCCCCccc----chhhHHHHHHHHHHH---------------------hhcCCCCeEE--EeC
Q 029661 90 IECVLDVVDLVLIMSVNPGFGGQSF----IESQVKKISDLRRMC---------------------LEKGVNPWIE--VDG 142 (190)
Q Consensus 90 ~~~~~~~~d~i~~m~v~pG~~gq~~----~~~~~~ki~~~~~~~---------------------~~~~~~~~i~--vdG 142 (190)
++++-+.+-.|=- --++|++.-.- .......|++++++. .+.+ .+++. ..|
T Consensus 138 lRRI~EGAaMIRT-KGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAG 215 (296)
T COG0214 138 LRRISEGAAMIRT-KGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAG 215 (296)
T ss_pred HHHHhhhHHHHhc-CCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhC-CCCeEeeccc
Confidence 6665554443310 12345442100 001111122221111 1111 12222 677
Q ss_pred CCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 143 GVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 143 GI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
||- |.....+.+.|||++-|||.||+++||.+.++.+-+
T Consensus 216 GvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~ 255 (296)
T COG0214 216 GVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVE 255 (296)
T ss_pred CcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHH
Confidence 776 889999999999999999999999999998887754
No 191
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.80 E-value=7.1e-05 Score=60.20 Aligned_cols=79 Identities=11% Similarity=0.291 Sum_probs=56.5
Q ss_pred CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
...|.+..+.+.+. +|.+.+......+.++... ++.++++++.. +.++.++|||+ ++.++++.++|||.+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~---~~~i~~i~~~~-----~~pv~~~GgI~~~e~~~~~~~~Gad~v 99 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVN---LELIEEIVKAV-----GIPVQVGGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCC---HHHHHHHHHhc-----CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 45667666666543 7888777665544444443 44455555543 36899999999 699999999999999
Q ss_pred EEcccccCC
Q 029661 161 VAGSAVFGA 169 (190)
Q Consensus 161 VvGsaI~~~ 169 (190)
++||+.+..
T Consensus 100 vigs~~l~d 108 (234)
T cd04732 100 IIGTAAVKN 108 (234)
T ss_pred EECchHHhC
Confidence 999998864
No 192
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.80 E-value=0.0014 Score=53.06 Aligned_cols=138 Identities=16% Similarity=0.161 Sum_probs=92.8
Q ss_pred CCCcEEEEEeecChHHHHHH--HHHcCCCEEEEcccC----------C-----CcchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661 23 TDLPLDVHLMIVEPEQRVPD--FIKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKDLGAKAGVVLNPAT 85 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~--~~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~~g~~~g~~i~p~t 85 (190)
.+.++.+-+-..+|+.+.+. ..+.++|++-+-.-+ + ..+.+.++++.+++.++.+.+=+.+..
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~ 145 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC 145 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 45689998888899887654 345589998873221 0 123456778888877777777677754
Q ss_pred CH-H--HHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCE
Q 029661 86 SL-S--AIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANA 159 (190)
Q Consensus 86 ~~-~--~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~ 159 (190)
+. + .+.+.+. .+|.|.+ +.++.|. ....++.|+++++-.+ +++|-.-|||+ .+++.++.++|||.
T Consensus 146 ~~~~~~~~a~~l~~aGad~i~V---d~~~~g~--~~a~~~~I~~i~~~~~----~ipIIgNGgI~s~eda~e~l~~GAd~ 216 (231)
T TIGR00736 146 IPLDELIDALNLVDDGFDGIHV---DAMYPGK--PYADMDLLKILSEEFN----DKIIIGNNSIDDIESAKEMLKAGADF 216 (231)
T ss_pred CcchHHHHHHHHHHcCCCEEEE---eeCCCCC--chhhHHHHHHHHHhcC----CCcEEEECCcCCHHHHHHHHHhCCCe
Confidence 31 1 2223232 3788865 4343332 1134777777776432 26788999999 79999999999999
Q ss_pred EEEcccccCC
Q 029661 160 LVAGSAVFGA 169 (190)
Q Consensus 160 ~VvGsaI~~~ 169 (190)
+-+||++++.
T Consensus 217 VmvgR~~l~~ 226 (231)
T TIGR00736 217 VSVARAILKG 226 (231)
T ss_pred EEEcHhhccC
Confidence 9999988763
No 193
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.80 E-value=8.2e-05 Score=60.90 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=57.3
Q ss_pred CCC-HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEE
Q 029661 84 ATS-LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV 161 (190)
Q Consensus 84 ~t~-~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~V 161 (190)
..| ++.++.|.+. ++.+-+.-. |.. . .+.|+++.+. .+.++++.|||+.++++.+.++|||-++
T Consensus 37 ~~pp~~~A~~~~~~Ga~~lHvVDL-----g~~-n---~~~i~~i~~~-----~~~~v~vGGGIr~e~v~~~l~aGa~rVv 102 (253)
T TIGR02129 37 DKPSSYYAKLYKDDGVKGCHVIML-----GPN-N---DDAAKEALHA-----YPGGLQVGGGINDTNAQEWLDEGASHVI 102 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEC-----CCC-c---HHHHHHHHHh-----CCCCEEEeCCcCHHHHHHHHHcCCCEEE
Confidence 346 8888887654 666644323 322 2 2334444443 2468999999999999999999999999
Q ss_pred EcccccCCCC--HHHHHHHHHHhhc
Q 029661 162 AGSAVFGAKD--YAEAIKGIKTSKR 184 (190)
Q Consensus 162 vGsaI~~~~d--p~~~~~~l~~~~~ 184 (190)
+||+.++.+. | +.++++.+...
T Consensus 103 IGS~av~~~~i~~-~~~~~i~~~fG 126 (253)
T TIGR02129 103 VTSWLFTKGKFDL-KRLKEIVSLVG 126 (253)
T ss_pred ECcHHHhCCCCCH-HHHHHHHHHhC
Confidence 9999987532 3 34444444443
No 194
>PTZ00333 triosephosphate isomerase; Provisional
Probab=97.79 E-value=0.00089 Score=55.03 Aligned_cols=137 Identities=18% Similarity=0.279 Sum_probs=87.6
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HH----HHHHhhcccce---
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDVVDL--- 99 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~----~~~~~~~~~d~--- 99 (190)
.+.+.++|++++.+ |.|- .+++.+.+-++.+.++|+.+.+.+.-... .+ .++..++.++.
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~~ 161 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAW 161 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHHc
Confidence 57899999999999 3321 12466788888999999999988873221 11 22333333321
Q ss_pred -EEEEeeec----CCCCcccchhhH-HHHHHHHHHHhhc-----CCCCeEEEeCCCCcccHHHH-HHcCCCEEEEccccc
Q 029661 100 -VLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVF 167 (190)
Q Consensus 100 -i~~m~v~p----G~~gq~~~~~~~-~ki~~~~~~~~~~-----~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~ 167 (190)
=++.+-+| | +|+...|+.. +-.+.+|+.+.+. ..+.+|..+|+|+++|+.++ ...++|++-+||+..
T Consensus 162 ~~iiIAYEPvWAIG-tg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl 240 (255)
T PTZ00333 162 DNIVIAYEPVWAIG-TGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASL 240 (255)
T ss_pred ceEEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhh
Confidence 12345566 4 3555444443 3344555544321 23578999999999999765 577899999999888
Q ss_pred CCCCHHHHHHH
Q 029661 168 GAKDYAEAIKG 178 (190)
Q Consensus 168 ~~~dp~~~~~~ 178 (190)
+ +++.+-++.
T Consensus 241 ~-~~f~~Ii~~ 250 (255)
T PTZ00333 241 K-PDFVDIIKS 250 (255)
T ss_pred h-hhHHHHHHH
Confidence 7 356555544
No 195
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.78 E-value=0.00064 Score=52.61 Aligned_cols=142 Identities=20% Similarity=0.270 Sum_probs=85.7
Q ss_pred HHHHHHhccC-C--CCcEEEEEeecC----h---HHHHHHHHHcCCCEEEEcccCC---C--cchHHHHHHHHHHh---C
Q 029661 13 PLVVDALRPV-T--DLPLDVHLMIVE----P---EQRVPDFIKAGADIVSVHCEQS---S--TIHLHRTLNQIKDL---G 74 (190)
Q Consensus 13 ~~~v~~i~~~-~--~~~i~~hlmv~d----p---~~~i~~~~~~Gad~v~vh~e~~---~--~~~~~~~i~~i~~~---g 74 (190)
...++.+++. . +.|+.++.-..+ . .+.++.+.++|||.+.++.-.. + .+.+.+.++.+.+. +
T Consensus 34 g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 113 (201)
T cd00945 34 PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGG 113 (201)
T ss_pred HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCC
Confidence 3777777664 3 378888766554 3 3457788999999999863210 0 12344555555554 7
Q ss_pred CcEEEEEcCCCC--HHHHHHh---h--cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661 75 AKAGVVLNPATS--LSAIECV---L--DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P 146 (190)
Q Consensus 75 ~~~g~~i~p~t~--~~~~~~~---~--~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~ 146 (190)
+.+.+-..|... .+.+.+. + ..+|.|- ..+|.... ...++.++++++..+ .++++.+.||++ +
T Consensus 114 ~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK---~~~~~~~~---~~~~~~~~~i~~~~~---~~~~v~~~gg~~~~ 184 (201)
T cd00945 114 LPLKVILETRGLKTADEIAKAARIAAEAGADFIK---TSTGFGGG---GATVEDVKLMKEAVG---GRVGVKAAGGIKTL 184 (201)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE---eCCCCCCC---CCCHHHHHHHHHhcc---cCCcEEEECCCCCH
Confidence 777776666533 3333332 1 2355542 22232110 113445555555442 135788999999 7
Q ss_pred ccHHHHHHcCCCEEEEc
Q 029661 147 KNAYKVIEAGANALVAG 163 (190)
Q Consensus 147 e~~~~~~~aGad~~VvG 163 (190)
+++..+...|++.+++|
T Consensus 185 ~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 185 EDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHhccceeecC
Confidence 88889999999999876
No 196
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.75 E-value=0.0023 Score=56.17 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=98.5
Q ss_pred HHHHhccC-CCCcEEEEEeec-ChHHH---HHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHh-C
Q 029661 15 VVDALRPV-TDLPLDVHLMIV-EPEQR---VPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDL-G 74 (190)
Q Consensus 15 ~v~~i~~~-~~~~i~~hlmv~-dp~~~---i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~-g 74 (190)
.++.+++. ++.|+.+.+.-. +++.| .+.+.++|+|++-+-.... ..+.+.++++.+++. .
T Consensus 89 ~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~ 168 (420)
T PRK08318 89 EIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSR 168 (420)
T ss_pred HHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccC
Confidence 34445443 467888988877 78655 4456778999999842220 112456677777765 4
Q ss_pred CcEEEEEcCCC-CHHHHHHhhc--ccceEEE-------Eee-----------ec-----CCCCcccchhhHHHHHHHHHH
Q 029661 75 AKAGVVLNPAT-SLSAIECVLD--VVDLVLI-------MSV-----------NP-----GFGGQSFIESQVKKISDLRRM 128 (190)
Q Consensus 75 ~~~g~~i~p~t-~~~~~~~~~~--~~d~i~~-------m~v-----------~p-----G~~gq~~~~~~~~ki~~~~~~ 128 (190)
+.+.+=+.|+. .+..+.+.+. .+|-|.+ |.+ ++ |++|....|..++.|+++++.
T Consensus 169 ~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~ 248 (420)
T PRK08318 169 LPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD 248 (420)
T ss_pred CcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc
Confidence 55555577764 3434434332 3676653 211 11 345666566678888887765
Q ss_pred HhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 129 CLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 129 ~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
... .+++|..-|||. .+++.+++.+|||.+=+||+++.
T Consensus 249 ~~~--~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 249 PET--RGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred ccc--CCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 421 147888999998 78999999999999999999886
No 197
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.75 E-value=0.00016 Score=60.51 Aligned_cols=92 Identities=15% Similarity=0.265 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661 62 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 140 (190)
Q Consensus 62 ~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v 140 (190)
.+.+.++.+|+.-...-+.+..+| .+.+.+.++. +|.|++ +. |.|+. ++++.++... ++.|++
T Consensus 194 ~i~~av~~~r~~~~~~kIeVEv~s-leea~ea~~~gaDiI~L-------Dn--~s~e~---~~~av~~~~~---~~~iea 257 (296)
T PRK09016 194 SIRQAVEKAFWLHPDVPVEVEVEN-LDELDQALKAGADIIML-------DN--FTTEQ---MREAVKRTNG---RALLEV 257 (296)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCC-HHHHHHHHHcCCCEEEe-------CC--CChHH---HHHHHHhhcC---CeEEEE
Confidence 367778888875322224555555 6666666654 888875 22 33333 3444444332 478999
Q ss_pred eCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 141 DGGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 141 dGGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.||||++|+.++.+.|+|++++|+..-++
T Consensus 258 SGGI~~~ni~~yA~tGVD~Is~galthsa 286 (296)
T PRK09016 258 SGNVTLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred ECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 99999999999999999999999854443
No 198
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.75 E-value=0.00014 Score=65.67 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=65.9
Q ss_pred CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc------------ccHHH
Q 029661 85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP------------KNAYK 151 (190)
Q Consensus 85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~------------e~~~~ 151 (190)
.|++..+.|-+. +|.+.++-......+..-....++-|+++.+.+ .++++|.|||+. |.++.
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-----~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-----FVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-----CCCEEEcCCccccccccccccchHHHHHH
Confidence 566777776654 899988777632233333334466666665543 478999999995 66899
Q ss_pred HHHcCCCEEEEcccccCCC----------CHHHHHHHHHHhhccccc
Q 029661 152 VIEAGANALVAGSAVFGAK----------DYAEAIKGIKTSKRPQAV 188 (190)
Q Consensus 152 ~~~aGad~~VvGsaI~~~~----------dp~~~~~~l~~~~~~~~~ 188 (190)
+.++|||-+++||+-++.+ +|. .++++-+....|++
T Consensus 343 ~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~-~i~~~~~~fg~q~i 388 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAAEEYIASGVKTGKT-SIEQISRVYGNQAV 388 (538)
T ss_pred HHHcCCCEEEEChHHHhChhhhhccccccCHH-HHHHHHHHcCCceE
Confidence 9999999999999877643 443 45555444455543
No 199
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.74 E-value=0.00012 Score=59.70 Aligned_cols=81 Identities=14% Similarity=0.254 Sum_probs=59.1
Q ss_pred CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
...|++..+.|.+. +|.+.+.-.+....|+.-. .+-|+++.+.. .+++++|||+ .+.++.+.++|||-+
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n---~~~i~~i~~~~------~~v~vGGGIrs~e~~~~~l~~Ga~rv 99 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKAIENSVEN---LPVLEKLSEFA------EHIQIGGGIRSLDYAEKLRKLGYRRQ 99 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCcccCCcch---HHHHHHHHhhc------CcEEEecCCCCHHHHHHHHHCCCCEE
Confidence 35788877777654 7888887777555554433 33444444432 3799999999 699999999999999
Q ss_pred EEcccccCCCCH
Q 029661 161 VAGSAVFGAKDY 172 (190)
Q Consensus 161 VvGsaI~~~~dp 172 (190)
|+||..++.++.
T Consensus 100 vigT~a~~~p~~ 111 (241)
T PRK14114 100 IVSSKVLEDPSF 111 (241)
T ss_pred EECchhhCCHHH
Confidence 999999885543
No 200
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.73 E-value=6.2e-05 Score=60.84 Aligned_cols=94 Identities=16% Similarity=0.300 Sum_probs=60.1
Q ss_pred EcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCC
Q 029661 81 LNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN 158 (190)
Q Consensus 81 i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad 158 (190)
.....|++.++.|.. .+|.+.+.-.+....| .+..++.|+++.+.. ..+++++|||+ .+.+..+.++||+
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g---~~~n~~~i~~i~~~~-----~~~i~vgGGIrs~ed~~~ll~~Ga~ 97 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDAAKEG---RGSNLELIKEIAKET-----GIPIQVGGGIRSIEDAERLLDAGAD 97 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHHHCCT---HHHHHHHHHHHHHHS-----SSEEEEESSE-SHHHHHHHHHTT-S
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccCcccC---chhHHHHHHHHHhcC-----CccEEEeCccCcHHHHHHHHHhCCC
Confidence 344567777777743 3788777655532223 233455566655543 36899999999 6899999999999
Q ss_pred EEEEcccccCCCCHHHHHHHHHHhhcc
Q 029661 159 ALVAGSAVFGAKDYAEAIKGIKTSKRP 185 (190)
Q Consensus 159 ~~VvGsaI~~~~dp~~~~~~l~~~~~~ 185 (190)
-+|+||+.++.++ .++++.+....
T Consensus 98 ~Vvigt~~~~~~~---~l~~~~~~~g~ 121 (229)
T PF00977_consen 98 RVVIGTEALEDPE---LLEELAERYGS 121 (229)
T ss_dssp EEEESHHHHHCCH---HHHHHHHHHGG
T ss_pred EEEeChHHhhchh---HHHHHHHHcCc
Confidence 9999999887543 34444444333
No 201
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=97.73 E-value=0.00029 Score=57.57 Aligned_cols=133 Identities=19% Similarity=0.314 Sum_probs=82.8
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCC-------CCHHHHH----Hhhcccce---
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPA-------TSLSAIE----CVLDVVDL--- 99 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~-------t~~~~~~----~~~~~~d~--- 99 (190)
.+++.+.|++++.+ |.|- .+.+.+.+-++.+.++|+.+.+.+.-+ ...+.+. ..++.++.
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~ 156 (244)
T PF00121_consen 77 AEMLKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEEL 156 (244)
T ss_dssp HHHHHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGG
T ss_pred HHHHHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 67899999999999 4321 025678888899999999999988742 1122222 22222221
Q ss_pred -EEEEeeec----CCCCcccchhhH-HHHHHHHHHHhh-----cCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEccccc
Q 029661 100 -VLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVF 167 (190)
Q Consensus 100 -i~~m~v~p----G~~gq~~~~~~~-~ki~~~~~~~~~-----~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~ 167 (190)
=++.+-+| |+ |+...++-. +-.+.+|+.+.+ ...+++|..+|+++++|+.++ ...+.|++-+|++-.
T Consensus 157 ~~~iIAYEPvWAIGt-G~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl 235 (244)
T PF00121_consen 157 KNIIIAYEPVWAIGT-GKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASL 235 (244)
T ss_dssp TCEEEEEEEGGGTSS-SS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGG
T ss_pred cceEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhh
Confidence 12234565 43 554443333 334455554322 123578999999999999976 467899999999988
Q ss_pred CCCCHH
Q 029661 168 GAKDYA 173 (190)
Q Consensus 168 ~~~dp~ 173 (190)
+.+++.
T Consensus 236 ~~~~F~ 241 (244)
T PF00121_consen 236 KAESFL 241 (244)
T ss_dssp STHHHH
T ss_pred cccchh
Confidence 765443
No 202
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.72 E-value=0.0022 Score=51.10 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=88.3
Q ss_pred CCHHHHHHhccC-C-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh--CCcEEEEEcCCCC
Q 029661 11 IGPLVVDALRPV-T-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATS 86 (190)
Q Consensus 11 ~G~~~v~~i~~~-~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~--g~~~g~~i~p~t~ 86 (190)
..++..++|.+. + .+..+.=+.-.+++...+.+...|.|.+-+|.+. + .+.++.+++. +.++.-++....+
T Consensus 37 V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~e----~-~~~~~~l~~~~~~~~iika~~~~~~ 111 (207)
T PRK13958 37 QTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGTE----S-IDFIQEIKKKYSSIKIIKALPADEN 111 (207)
T ss_pred CCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCCC----C-HHHHHHHhhcCCCceEEEEecccHH
Confidence 456677777763 2 2333332223456777777888999999999863 2 2456667754 3566556655322
Q ss_pred -HHHHHHhhcccceEEEEeee--cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH--cCCCEEE
Q 029661 87 -LSAIECVLDVVDLVLIMSVN--PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE--AGANALV 161 (190)
Q Consensus 87 -~~~~~~~~~~~d~i~~m~v~--pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~--aGad~~V 161 (190)
.+.+.++...+|++++=+.. +|.+|+.|.-..+ +++ . ..++...||+|++|+.++.. .+..++=
T Consensus 112 ~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~~dw~~~---~~~---~-----~~p~iLAGGL~peNV~~a~~~~~~p~gVD 180 (207)
T PRK13958 112 IIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTIL---KHI---K-----DIPYLIAGGINSENIQTVEQLKLSHQGYD 180 (207)
T ss_pred HHHHHHHHHhhCCEEEEcCCCCCCCcCCcEeChHHh---hhc---c-----CCCEEEECCCCHHHHHHHHhcCCCCCEEE
Confidence 23344554557888875522 2445777754333 222 1 13577999999999999764 3666666
Q ss_pred EcccccC--CCCHHH
Q 029661 162 AGSAVFG--AKDYAE 174 (190)
Q Consensus 162 vGsaI~~--~~dp~~ 174 (190)
+-|.+=. ..|+..
T Consensus 181 vsSGVE~~G~KD~~k 195 (207)
T PRK13958 181 IASGIETNGRKDINK 195 (207)
T ss_pred cccccCCCCCCCHHH
Confidence 6555432 246653
No 203
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.71 E-value=0.00013 Score=59.17 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=55.1
Q ss_pred CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661 84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 161 (190)
Q Consensus 84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V 161 (190)
..|++..+.|.+. +|.+.+.-.+.-. ++.-. .+-|+++.+.. . .+++++|||+ .++++.+.+.|||-+|
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n---~~~i~~i~~~~----~-~~v~vGGGIrs~e~~~~~l~~Ga~kvv 100 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAE-GVGNN---EMYIKEISKIG----F-DWIQVGGGIRDIEKAKRLLSLDVNALV 100 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcC-CCcch---HHHHHHHHhhC----C-CCEEEeCCcCCHHHHHHHHHCCCCEEE
Confidence 4788887777654 7888877666322 33222 34444444421 1 2799999999 5999999999999999
Q ss_pred EcccccCCC
Q 029661 162 AGSAVFGAK 170 (190)
Q Consensus 162 vGsaI~~~~ 170 (190)
+||.-++.+
T Consensus 101 igt~a~~~p 109 (232)
T PRK13586 101 FSTIVFTNF 109 (232)
T ss_pred ECchhhCCH
Confidence 999988754
No 204
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=97.70 E-value=0.0017 Score=52.45 Aligned_cols=163 Identities=16% Similarity=0.227 Sum_probs=109.4
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEE
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
+-+..|++....++.. -.+--.++++.+.+...+.+|+-+|.- ..+.+..+++.+++.|+++.++
T Consensus 55 ~Dv~~L~~~~~~~lNl--E~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLF 132 (239)
T PRK05265 55 RDVRLLRETLKTELNL--EMAATEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLF 132 (239)
T ss_pred HHHHHHHHhcCCCEEe--ccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEE
Confidence 3466677654445544 233225689999999999999976641 1134788999999999999999
Q ss_pred EcCCCC-HHHHHHhhcccceEEEEeeecCCCCccc---chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH-c
Q 029661 81 LNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSF---IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-A 155 (190)
Q Consensus 81 i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~---~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~-a 155 (190)
+.|+.. ++..+++ .+|.|-+.| |.....+ ...-++++...-++..+. .+.+.++.|+|.+|++.+.+ -
T Consensus 133 idP~~~qi~~A~~~--GAd~VELhT---G~yA~a~~~~~~~el~~~~~aa~~a~~l--GL~VnAGHgLny~Nv~~i~~ip 205 (239)
T PRK05265 133 IDPDPEQIEAAAEV--GADRIELHT---GPYADAKTEAEAAELERIAKAAKLAASL--GLGVNAGHGLNYHNVKPIAAIP 205 (239)
T ss_pred eCCCHHHHHHHHHh--CcCEEEEec---hhhhcCCCcchHHHHHHHHHHHHHHHHc--CCEEecCCCCCHHhHHHHhhCC
Confidence 987533 3333333 589997643 3221111 133367777666666554 46788999999999998765 4
Q ss_pred CCCEEEEcccccCC---CCHHHHHHHHHHhhcc
Q 029661 156 GANALVAGSAVFGA---KDYAEAIKGIKTSKRP 185 (190)
Q Consensus 156 Gad~~VvGsaI~~~---~dp~~~~~~l~~~~~~ 185 (190)
+..=+-+|-+|+.. --..++++++++.++.
T Consensus 206 ~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~~ 238 (239)
T PRK05265 206 GIEELNIGHAIIARALFVGLEEAVREMKRLMDE 238 (239)
T ss_pred CCeEEccCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 56778889877753 2566788888776653
No 205
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.70 E-value=0.0026 Score=54.05 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=90.6
Q ss_pred HHHHhccC-CCCcEEEEEeec-----ChHHHHHHHHHcCCCEEEEcccC----C---CcchHH---HHHHHHHHh-CCcE
Q 029661 15 VVDALRPV-TDLPLDVHLMIV-----EPEQRVPDFIKAGADIVSVHCEQ----S---STIHLH---RTLNQIKDL-GAKA 77 (190)
Q Consensus 15 ~v~~i~~~-~~~~i~~hlmv~-----dp~~~i~~~~~~Gad~v~vh~e~----~---~~~~~~---~~i~~i~~~-g~~~ 77 (190)
..+.+|+. ++.|+.+-+-+. +++.+.+....++||.+-+|... . ...+.. +.++.+++. .+.+
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPV 181 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPV 181 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCE
Confidence 33445555 347766666553 35555555666789999998632 0 012333 556666665 6666
Q ss_pred EEEEcC-CCCHHHHHHhhc-ccceEEEEeeecCCC--------C--------ccc---chhhHHHHHHHHHHHhhcCCCC
Q 029661 78 GVVLNP-ATSLSAIECVLD-VVDLVLIMSVNPGFG--------G--------QSF---IESQVKKISDLRRMCLEKGVNP 136 (190)
Q Consensus 78 g~~i~p-~t~~~~~~~~~~-~~d~i~~m~v~pG~~--------g--------q~~---~~~~~~ki~~~~~~~~~~~~~~ 136 (190)
.+=... .++.+..+.+.+ .+|.|.+-+. -|+. + ..+ ...+.+.|.++++... ++
T Consensus 182 ivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~----~i 256 (326)
T cd02811 182 IVKEVGFGISRETAKRLADAGVKAIDVAGA-GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP----DL 256 (326)
T ss_pred EEEecCCCCCHHHHHHHHHcCCCEEEECCC-CCCcccccccccccccccccccccccccccHHHHHHHHHHHcC----CC
Confidence 653332 255666666554 3899877432 2210 0 111 1223455666655432 47
Q ss_pred eEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 137 WIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 137 ~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
+|.++|||+ ...+.+++..|||.+-+||++..
T Consensus 257 pIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 257 PLIASGGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred cEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 899999999 68888999999999999998654
No 206
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.70 E-value=0.0011 Score=59.10 Aligned_cols=131 Identities=21% Similarity=0.339 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE-cCCCCHHHHHHhhc-ccceEEEEeeec-------
Q 029661 37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNP------- 107 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i-~p~t~~~~~~~~~~-~~d~i~~m~v~p------- 107 (190)
.+.++.+.+.|+|.|.+-.-.+......++++.+|+.--.+-+.. |..|.-. .+.+++ .+|.|-+ ++=|
T Consensus 229 ~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~-a~~l~~aGad~v~v-gig~gsictt~ 306 (479)
T PRK07807 229 AAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEG-TRDLVEAGADIVKV-GVGPGAMCTTR 306 (479)
T ss_pred HHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHH-HHHHHHcCCCEEEE-CccCCcccccc
Confidence 356778899999998884333223567788999998644455555 5555543 444444 5898753 2222
Q ss_pred CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC-CCHH
Q 029661 108 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 173 (190)
Q Consensus 108 G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~-~dp~ 173 (190)
+..|... | .+.-+.++.+...+ .+.++..||||+ ++.+.++..+|||.+++||.+-.. +.|.
T Consensus 307 ~~~~~~~-p-~~~av~~~~~~~~~--~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg 370 (479)
T PRK07807 307 MMTGVGR-P-QFSAVLECAAAARE--LGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPG 370 (479)
T ss_pred cccCCch-h-HHHHHHHHHHHHHh--cCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCC
Confidence 2222211 2 34445555554333 357899999999 799999999999999999988654 3443
No 207
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.69 E-value=0.0016 Score=54.04 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=92.7
Q ss_pred HHHHHhccC-CCCcEEEEEeecC-----------hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVE-----------PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 81 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~d-----------p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i 81 (190)
+.++.+++. ++.++-++....+ -..+++.+.++|+++|.+-.-....+.+.+.++.+|++|.++.+.+
T Consensus 59 e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 59 ERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 556777764 6667776554322 1346788899999997775332124567889999999999887655
Q ss_pred c----CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCccc
Q 029661 82 N----PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKN 148 (190)
Q Consensus 82 ~----p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~ 148 (190)
+ +.++.+.+.++... +|.|.+ +-+.|...+..+.+.++.+|+..+ .+|++ |.|....|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~-----~~l~~H~Hnd~GlA~aN 209 (275)
T cd07937 139 CYTGSPVHTLEYYVKLAKELEDMGADSICI----KDMAGLLTPYAAYELVKALKKEVG-----LPIHLHTHDTSGLAVAT 209 (275)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCCEEEE----cCCCCCCCHHHHHHHHHHHHHhCC-----CeEEEEecCCCChHHHH
Confidence 3 44555555554332 677754 344565556666777777776543 45666 77888778
Q ss_pred HHHHHHcCCCEEE
Q 029661 149 AYKVIEAGANALV 161 (190)
Q Consensus 149 ~~~~~~aGad~~V 161 (190)
.-..+++||+.+=
T Consensus 210 ~laA~~aGa~~vd 222 (275)
T cd07937 210 YLAAAEAGVDIVD 222 (275)
T ss_pred HHHHHHhCCCEEE
Confidence 8888999999764
No 208
>PLN02561 triosephosphate isomerase
Probab=97.69 E-value=0.0012 Score=54.17 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=79.7
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCC-------CH----HHHHHhhcccceE--
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SL----SAIECVLDVVDLV-- 100 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t-------~~----~~~~~~~~~~d~i-- 100 (190)
.+.+.++|++++.+ |.|- .+++.+..-++.+.++|+.+.+.+.-.. .. +.++..+..++..
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~ 160 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWAN 160 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccc
Confidence 67899999999999 4331 1245567778889999999988887321 11 1233333333211
Q ss_pred EEEeeec----CCCCcccchhhHHH-HHHHHHHHhh-----cCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccC
Q 029661 101 LIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFG 168 (190)
Q Consensus 101 ~~m~v~p----G~~gq~~~~~~~~k-i~~~~~~~~~-----~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~ 168 (190)
++.+-+| | +|+.-.++-.+. .+.+|+.+.+ ...+++|..+|+|+++|+.++ ...++|++-+|++=.+
T Consensus 161 iiIAYEPvWAIG-tG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~ 238 (253)
T PLN02561 161 VVLAYEPVWAIG-TGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK 238 (253)
T ss_pred eEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH
Confidence 3445566 5 354433333333 2234443321 123578999999999998865 5778999999997555
No 209
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=97.68 E-value=0.0025 Score=54.65 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=92.6
Q ss_pred HHHHhccC--CCCcEEEEEeec-Ch---HHHHHHHHHcCCCEEEEcccCCCc----------------------------
Q 029661 15 VVDALRPV--TDLPLDVHLMIV-EP---EQRVPDFIKAGADIVSVHCEQSST---------------------------- 60 (190)
Q Consensus 15 ~v~~i~~~--~~~~i~~hlmv~-dp---~~~i~~~~~~Gad~v~vh~e~~~~---------------------------- 60 (190)
.++++.+. ++.++-..|.+. |. ...++.+.++|++.+.+|......
T Consensus 106 s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~ 185 (344)
T cd02922 106 SLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKG 185 (344)
T ss_pred CHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCcccccccccccccc
Confidence 44554433 345666777663 33 456788899999999998665100
Q ss_pred -------------chHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHH
Q 029661 61 -------------IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLR 126 (190)
Q Consensus 61 -------------~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~ 126 (190)
....+.++.+++.-..+.+ +.--+..+..+...+ .+|.|.+-. +-|.. ....+.+++-+.+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~Pvi-vKgv~~~~dA~~a~~~G~d~I~vsn-hgG~~-~d~~~~~~~~L~~i~ 262 (344)
T cd02922 186 GGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIV-LKGVQTVEDAVLAAEYGVDGIVLSN-HGGRQ-LDTAPAPIEVLLEIR 262 (344)
T ss_pred chHHHHHhhccCCCCCHHHHHHHHHhcCCcEE-EEcCCCHHHHHHHHHcCCCEEEEEC-CCccc-CCCCCCHHHHHHHHH
Confidence 0012456666664422222 222244555655554 488887632 32221 111234555667777
Q ss_pred HHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 127 RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 127 ~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
+...+.+.+++|.+||||+ ..++.+++..|||.+-+|++++.
T Consensus 263 ~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~ 305 (344)
T cd02922 263 KHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLY 305 (344)
T ss_pred HHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 7654433457899999999 57888999999999999998764
No 210
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.68 E-value=0.0014 Score=58.53 Aligned_cols=134 Identities=16% Similarity=0.311 Sum_probs=81.8
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC--Cc-
Q 029661 37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQ- 112 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--gq- 112 (190)
.+.++.+.++|+|.+.+-.-.+..+...+.++.+|+.-..+-+....--..+..+.+++ .+|.|-+ +.-||.. -+
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~v-g~g~Gs~~ttr~ 305 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKV-GVGPGAMCTTRM 305 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEE-CCcCCccccCcc
Confidence 45678899999999998433222345677888898863233332232233444555554 4888754 3333321 00
Q ss_pred --ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC-CCHH
Q 029661 113 --SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 173 (190)
Q Consensus 113 --~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~-~dp~ 173 (190)
.+....+.-+.++.+...+. ++++..||||+ +.++.+...+|||.+.+||.+-.. +.|.
T Consensus 306 ~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg 368 (475)
T TIGR01303 306 MTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPG 368 (475)
T ss_pred ccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCC
Confidence 11222333344443333332 47899999999 789999999999999999988654 3443
No 211
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.68 E-value=0.00013 Score=59.19 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=57.0
Q ss_pred CCCHHHHHHhhc-c-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 84 ATSLSAIECVLD-V-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 84 ~t~~~~~~~~~~-~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
.+|.+..+.|.+ . +|.+.+.-..-...++.- -++.|+++.+.. ..+++++|||+ .|.++.+.++||+-+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~---n~~~I~~i~~~~-----~~pi~vGGGIrs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAR---EFDYIKSLRRLT-----TKDIEVGGGIRTKSQIMDYFAAGINYC 102 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcc---hHHHHHHHHhhc-----CCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence 467777777776 3 788888666533334332 244455554432 36899999999 799999999999999
Q ss_pred EEcccccCCC
Q 029661 161 VAGSAVFGAK 170 (190)
Q Consensus 161 VvGsaI~~~~ 170 (190)
|+||+-++.+
T Consensus 103 vigt~a~~~~ 112 (234)
T PRK13587 103 IVGTKGIQDT 112 (234)
T ss_pred EECchHhcCH
Confidence 9999988753
No 212
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.67 E-value=0.00093 Score=56.40 Aligned_cols=143 Identities=17% Similarity=0.261 Sum_probs=94.7
Q ss_pred CCCcEEEEEeecChHHHHHH---HHHcC-CCEEEEcccCC----------CcchHHHHHHHHHHh-CCcEEEEEcCCCCH
Q 029661 23 TDLPLDVHLMIVEPEQRVPD---FIKAG-ADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPATSL 87 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~---~~~~G-ad~v~vh~e~~----------~~~~~~~~i~~i~~~-g~~~g~~i~p~t~~ 87 (190)
++.|+.+.++-.++++|.+. +.++| ||.+-+-..+. +.+.+.++++.+++. .+.+.+=+.|..+.
T Consensus 91 ~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~ 170 (310)
T PRK02506 91 PNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDI 170 (310)
T ss_pred CCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCH
Confidence 36899999888888877543 45667 99998843320 023456677777774 45566678888776
Q ss_pred HHHHHhhc-----ccceEE-E------Eeeec--------------CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEe
Q 029661 88 SAIECVLD-----VVDLVL-I------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 141 (190)
Q Consensus 88 ~~~~~~~~-----~~d~i~-~------m~v~p--------------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd 141 (190)
..+.+.++ .++.|. + |.+++ |.+|....|..++.+.++++..+ .+++|..-
T Consensus 171 ~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~---~~ipIig~ 247 (310)
T PRK02506 171 VHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLN---PSIQIIGT 247 (310)
T ss_pred HHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcC---CCCCEEEE
Confidence 55544332 123321 1 11211 12455556777777777766542 34789999
Q ss_pred CCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 142 GGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 142 GGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
|||. .+++.+++.+|||.+=+||+++.
T Consensus 248 GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 248 GGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 9998 78999999999999999999876
No 213
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.66 E-value=0.0004 Score=57.76 Aligned_cols=137 Identities=18% Similarity=0.263 Sum_probs=82.0
Q ss_pred HHHHHhccCCCCcEEEEEeecChH-HHH-HHHHHcCC---------CEEEE---cccC--CCcchHHHHHHHHHHhC---
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPE-QRV-PDFIKAGA---------DIVSV---HCEQ--SSTIHLHRTLNQIKDLG--- 74 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~-~~i-~~~~~~Ga---------d~v~v---h~e~--~~~~~~~~~i~~i~~~g--- 74 (190)
++|+.++. ++..+..-=|+. |+ +++ +.+..+|- |.|.+ |... ...+.+.+.++.+|++.
T Consensus 116 ~~V~~~~~-~~~~i~~TRKT~-PG~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~ 193 (281)
T PRK06543 116 AFVDAVNG-TRARIVDTRKTT-PGLRIFERYAVRCGGGHNHRYSLSDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHT 193 (281)
T ss_pred HHHHHhcC-CCCEEEeCCCCC-CcchHHHHHHHHhcCCcCcCCCCCceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCC
Confidence 45566654 444444422222 53 343 44555542 45555 5331 01124778888888863
Q ss_pred CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHH
Q 029661 75 AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI 153 (190)
Q Consensus 75 ~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~ 153 (190)
.++-+-+ + +++.+.+.++ .+|.|++ +. |.|+. ++++.+++++ ...+++.||||++|+.++.
T Consensus 194 ~kIeVEv--~-slee~~ea~~~gaDiImL-------Dn--~s~e~---l~~av~~~~~---~~~leaSGgI~~~ni~~yA 255 (281)
T PRK06543 194 THVEVEV--D-RLDQIEPVLAAGVDTIML-------DN--FSLDD---LREGVELVDG---RAIVEASGNVNLNTVGAIA 255 (281)
T ss_pred CcEEEEe--C-CHHHHHHHHhcCCCEEEE-------CC--CCHHH---HHHHHHHhCC---CeEEEEECCCCHHHHHHHH
Confidence 3444433 3 4555566554 4898875 22 44444 3444444433 2479999999999999999
Q ss_pred HcCCCEEEEcccccCCC
Q 029661 154 EAGANALVAGSAVFGAK 170 (190)
Q Consensus 154 ~aGad~~VvGsaI~~~~ 170 (190)
+.|+|++++|+-..+++
T Consensus 256 ~tGVD~Is~galths~~ 272 (281)
T PRK06543 256 STGVDVISVGALTHSVR 272 (281)
T ss_pred hcCCCEEEeCccccCCc
Confidence 99999999998666654
No 214
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.65 E-value=0.0012 Score=54.16 Aligned_cols=147 Identities=18% Similarity=0.079 Sum_probs=85.5
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC--cchHHHHHHHHHHhC---CcEEEEEc----
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS--TIHLHRTLNQIKDLG---AKAGVVLN---- 82 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~--~~~~~~~i~~i~~~g---~~~g~~i~---- 82 (190)
..+.+++|.+.++.|+.+===+ +. +-++.++++||+.|.+.-.+.. .-+++-+-+.++++| +-+++...
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGI-r~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~ 141 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGI-ND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQD 141 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCc-CH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCC
Confidence 3467777777666555441111 34 6688899999999999753310 112445555566665 22233322
Q ss_pred --------C------CCCH-HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-c
Q 029661 83 --------P------ATSL-SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P 146 (190)
Q Consensus 83 --------p------~t~~-~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~ 146 (190)
. -++. +.++++.+.+..+++=.+. .+|....+ -++.++++++.. +.++.+.||++ .
T Consensus 142 g~~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~--rDGtl~G~-dlel~~~l~~~~-----~ipVIASGGv~s~ 213 (253)
T TIGR02129 142 GRWIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAAD--VEGLCKGI-DEELVSKLGEWS-----PIPITYAGGAKSI 213 (253)
T ss_pred CcEEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeec--ccCccccC-CHHHHHHHHhhC-----CCCEEEECCCCCH
Confidence 1 0223 3344443346667665554 33332222 244455555542 47899999999 7
Q ss_pred ccHHHHHHc--CCCEEEEcccccC
Q 029661 147 KNAYKVIEA--GANALVAGSAVFG 168 (190)
Q Consensus 147 e~~~~~~~a--Gad~~VvGsaI~~ 168 (190)
+++.++.+. |...+|+|+++|.
T Consensus 214 eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 214 DDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHHHhcCCCCcEEeeehHHH
Confidence 999988554 5566999999885
No 215
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.64 E-value=0.00031 Score=57.17 Aligned_cols=77 Identities=13% Similarity=0.228 Sum_probs=55.5
Q ss_pred CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661 85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 162 (190)
Q Consensus 85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv 162 (190)
.|++..+.|.+. +|.+.+.-.+ +..|.. .-++-|+++.+.. ..+++++|||+ .|.++.+..+||+-+++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd-~~~g~~---~n~~~i~~i~~~~-----~~pv~vgGGirs~edv~~~l~~Ga~kvvi 103 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLD-AAFGRG---SNRELLAEVVGKL-----DVKVELSGGIRDDESLEAALATGCARVNI 103 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecc-ccCCCC---ccHHHHHHHHHHc-----CCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 677777776553 6777776655 322322 2245556655543 36899999999 79999999999999999
Q ss_pred cccccCCC
Q 029661 163 GSAVFGAK 170 (190)
Q Consensus 163 GsaI~~~~ 170 (190)
||+.++.+
T Consensus 104 Gs~~l~~p 111 (241)
T PRK14024 104 GTAALENP 111 (241)
T ss_pred CchHhCCH
Confidence 99998754
No 216
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=97.64 E-value=0.00058 Score=56.35 Aligned_cols=140 Identities=15% Similarity=0.240 Sum_probs=85.1
Q ss_pred HHHHHhccCCCCcEEEEEeecChH-HHHH-HHHHcCC---------CEEEE---cccCCCcchHHHHHHHHHHh-CCcEE
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPE-QRVP-DFIKAGA---------DIVSV---HCEQSSTIHLHRTLNQIKDL-GAKAG 78 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~-~~i~-~~~~~Ga---------d~v~v---h~e~~~~~~~~~~i~~i~~~-g~~~g 78 (190)
+.|+.+|.. +..+-+-=|+ -|+ +.++ .+..+|- |.+.+ |.-. ...+.+.++.+|++ +...-
T Consensus 115 ~~V~~~~~~-~~~i~~TRKT-~PglR~leKyAV~~GGG~nHR~gLsDavliKDNHia~--~g~i~~Av~~aR~~~~~~~k 190 (280)
T COG0157 115 RMVEALRGT-NVRIADTRKT-TPGLRLLEKYAVRAGGGDNHRFGLSDAVLIKDNHIAA--AGSITEAVRRARAAAPFTKK 190 (280)
T ss_pred HHHHHhhcc-CcEEEeccCC-CccHHHHHHHHHHhcCCccccCCCcceEEehhhHHHH--hccHHHHHHHHHHhCCCCce
Confidence 456677663 3333332233 364 4444 4555543 44544 4332 23588899999986 33333
Q ss_pred EEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCC
Q 029661 79 VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN 158 (190)
Q Consensus 79 ~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad 158 (190)
+-+..++.-+..+.+-..+|.|++ +. |.|+. ++++-+++. .+.+..+++.||||++|++.+.+.|+|
T Consensus 191 IEVEvesle~~~eAl~agaDiImL-------DN--m~~e~---~~~av~~l~-~~~~~~lEaSGgIt~~ni~~yA~tGVD 257 (280)
T COG0157 191 IEVEVESLEEAEEALEAGADIIML-------DN--MSPEE---LKEAVKLLG-LAGRALLEASGGITLENIREYAETGVD 257 (280)
T ss_pred EEEEcCCHHHHHHHHHcCCCEEEe-------cC--CCHHH---HHHHHHHhc-cCCceEEEEeCCCCHHHHHHHhhcCCC
Confidence 556555554443334445999986 22 44444 344444432 223578999999999999999999999
Q ss_pred EEEEcccccCCC
Q 029661 159 ALVAGSAVFGAK 170 (190)
Q Consensus 159 ~~VvGsaI~~~~ 170 (190)
++.+|.-..+++
T Consensus 258 ~IS~galths~~ 269 (280)
T COG0157 258 VISVGALTHSAP 269 (280)
T ss_pred EEEeCccccCCc
Confidence 999987665554
No 217
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.62 E-value=0.00021 Score=57.88 Aligned_cols=79 Identities=13% Similarity=0.347 Sum_probs=53.5
Q ss_pred CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661 84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 161 (190)
Q Consensus 84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V 161 (190)
..|.+.++.+.+. +|.+.+-..+....+.. ...+.|+++.+.. +.++.++|||+ .+++..+.++|||.++
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~---~~~~~i~~i~~~~-----~~~l~v~GGi~~~~~~~~~~~~Ga~~v~ 103 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGER---KNAEAIEKIIEAV-----GVPVQLGGGIRSAEDAASLLDLGVDRVI 103 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCc---ccHHHHHHHHHHc-----CCcEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence 4566766666553 67776654442222221 2244455544432 46899999999 7999999999999999
Q ss_pred EcccccCCC
Q 029661 162 AGSAVFGAK 170 (190)
Q Consensus 162 vGsaI~~~~ 170 (190)
+||..++.+
T Consensus 104 iGs~~~~~~ 112 (241)
T PRK13585 104 LGTAAVENP 112 (241)
T ss_pred EChHHhhCh
Confidence 999998744
No 218
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.61 E-value=0.00024 Score=57.07 Aligned_cols=79 Identities=13% Similarity=0.281 Sum_probs=56.4
Q ss_pred CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661 84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 161 (190)
Q Consensus 84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V 161 (190)
.+|.+..+.|.+. +|.+.+...+.-..|+. ..++.++++++.. +.++.++|||+ .++++.+.++|||.++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~---~~~~~i~~i~~~~-----~~pv~~~GGI~~~ed~~~~~~~Ga~~vi 101 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKP---VNLELIEAIVKAV-----DIPVQVGGGIRSLETVEALLDAGVSRVI 101 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCc---ccHHHHHHHHHHC-----CCCEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence 4566666666543 78888877642223432 3355566665543 36899999999 6999999999999999
Q ss_pred EcccccCCC
Q 029661 162 AGSAVFGAK 170 (190)
Q Consensus 162 vGsaI~~~~ 170 (190)
+|++++..+
T Consensus 102 lg~~~l~~~ 110 (233)
T PRK00748 102 IGTAAVKNP 110 (233)
T ss_pred ECchHHhCH
Confidence 999999754
No 219
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.60 E-value=0.0024 Score=54.41 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=90.8
Q ss_pred HHhcc-CCCCcEEEEEeecC-----hHHHHHHHHHcCCCEEEEcccCC-------CcchHH---HHHHHHHHh-CCcEEE
Q 029661 17 DALRP-VTDLPLDVHLMIVE-----PEQRVPDFIKAGADIVSVHCEQS-------STIHLH---RTLNQIKDL-GAKAGV 79 (190)
Q Consensus 17 ~~i~~-~~~~~i~~hlmv~d-----p~~~i~~~~~~Gad~v~vh~e~~-------~~~~~~---~~i~~i~~~-g~~~g~ 79 (190)
+.+|+ .++.|+.+-+-+.. +..+.+.....+||.+-+|.... ...+.. +.++.+++. ++.+++
T Consensus 105 ~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPViv 184 (333)
T TIGR02151 105 EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIV 184 (333)
T ss_pred HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 45566 48889888665422 33344444556788888885310 011233 667777775 666665
Q ss_pred EEcC-CCCHHHHHHhhc-ccceEEEEeeecCCC--------------Cc---ccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661 80 VLNP-ATSLSAIECVLD-VVDLVLIMSVNPGFG--------------GQ---SFIESQVKKISDLRRMCLEKGVNPWIEV 140 (190)
Q Consensus 80 ~i~p-~t~~~~~~~~~~-~~d~i~~m~v~pG~~--------------gq---~~~~~~~~ki~~~~~~~~~~~~~~~i~v 140 (190)
=... .++.+..+.+.+ .+|.|.+-+. .|.. +. .|...+.+.|.++++. ..+++|.+
T Consensus 185 K~~g~g~~~~~a~~L~~aGvd~I~Vsg~-gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~----~~~ipVIa 259 (333)
T TIGR02151 185 KEVGFGISKEVAKLLADAGVSAIDVAGA-GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSD----APDAPIIA 259 (333)
T ss_pred EecCCCCCHHHHHHHHHcCCCEEEECCC-CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhc----CCCCeEEE
Confidence 3332 245555555544 3899877432 1211 00 0111233445554431 23578999
Q ss_pred eCCCC-cccHHHHHHcCCCEEEEcccccCC---CCHH
Q 029661 141 DGGVG-PKNAYKVIEAGANALVAGSAVFGA---KDYA 173 (190)
Q Consensus 141 dGGI~-~e~~~~~~~aGad~~VvGsaI~~~---~dp~ 173 (190)
+|||+ .+.+.+++..|||.+-+|+++..+ .+++
T Consensus 260 sGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~ 296 (333)
T TIGR02151 260 SGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEE 296 (333)
T ss_pred ECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHH
Confidence 99997 789999999999999999997743 4555
No 220
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00063 Score=54.16 Aligned_cols=137 Identities=23% Similarity=0.225 Sum_probs=89.6
Q ss_pred ecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCc
Q 029661 33 IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ 112 (190)
Q Consensus 33 v~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq 112 (190)
+-||.... .+.-.|||.|.+-....+...++.+++.+|..|+.+-+-+|......+..++ .+..| +++-- .=.
T Consensus 146 ivd~~QI~-~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei--Gakvv---GvNNR-nL~ 218 (289)
T KOG4201|consen 146 IVDPYQIY-EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI--GAKVV---GVNNR-NLH 218 (289)
T ss_pred ccCHHHHH-HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh--CcEEE---eecCC-ccc
Confidence 44565543 3566799999887554345678899999999999999988854444333332 24444 33311 112
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 029661 113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180 (190)
Q Consensus 113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~ 180 (190)
.|.- .+..-+++-+.++ .++.+..--||. ++.+..+.++|+..+.||-++.++.||.+.+..|.
T Consensus 219 sFeV-DlstTskL~E~i~---kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~ 283 (289)
T KOG4201|consen 219 SFEV-DLSTTSKLLEGIP---KDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELF 283 (289)
T ss_pred eeee-chhhHHHHHhhCc---cceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHh
Confidence 2321 1111122222233 245555666776 89999999999999999999999999999998874
No 221
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.59 E-value=0.003 Score=50.80 Aligned_cols=140 Identities=14% Similarity=0.105 Sum_probs=76.3
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHH--cCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCC----
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK--AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT---- 85 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~--~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t---- 85 (190)
..+.+++|.+.+ |+.+.==+.+.+. ++.+.. .||+.|.+--++ .++++.+-+.+ .-+++......
T Consensus 67 n~~~i~~i~~~~--~v~vgGGirs~e~-~~~~~~~l~~a~rvvigT~a--~~~p~~l~~~~----~vvslD~~~g~v~~~ 137 (221)
T TIGR00734 67 NFSLLSKLSKRV--ELIADCGVRSPED-LETLPFTLEFASRVVVATET--LDITELLRECY----TVVSLDFKEKFLDAS 137 (221)
T ss_pred hHHHHHHHHhhC--cEEEcCccCCHHH-HHHHHhhhccceEEeecChh--hCCHHHHHHhh----hEEEEEeECCccccc
Confidence 356777776643 3332222333332 333322 359999887664 44554332222 23444443111
Q ss_pred ----CHHHHHHhhcc--cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCC
Q 029661 86 ----SLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN 158 (190)
Q Consensus 86 ----~~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad 158 (190)
+...+.+.+.. + .++++.+. ..|....+ .++.++++++.. +.++.+.|||+ ++++.++.+.|||
T Consensus 138 g~~~~~~~~~~~~~~~g~-~ii~tdI~--~dGt~~G~-d~eli~~i~~~~-----~~pvia~GGi~s~ed~~~l~~~Ga~ 208 (221)
T TIGR00734 138 GLFESLEEVRDFLNSFDY-GLIVLDIH--SVGTMKGP-NLELLTKTLELS-----EHPVMLGGGISGVEDLELLKEMGVS 208 (221)
T ss_pred cccccHHHHHHHHHhcCC-EEEEEECC--ccccCCCC-CHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHCCCC
Confidence 11112222221 3 35555554 33332222 255556665543 36899999999 7999999999999
Q ss_pred EEEEcccccCC
Q 029661 159 ALVAGSAVFGA 169 (190)
Q Consensus 159 ~~VvGsaI~~~ 169 (190)
.+++||+++..
T Consensus 209 ~vivgsal~~g 219 (221)
T TIGR00734 209 AVLVATAVHKG 219 (221)
T ss_pred EEEEhHHhhCC
Confidence 99999998753
No 222
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.0028 Score=50.91 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=78.6
Q ss_pred HHHHhccCCCCcEEEEEeecCh---------------HHHHHHHHHcCCCEEEEcccCCC----cchHHHHHHHHHHhCC
Q 029661 15 VVDALRPVTDLPLDVHLMIVEP---------------EQRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKDLGA 75 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp---------------~~~i~~~~~~Gad~v~vh~e~~~----~~~~~~~i~~i~~~g~ 75 (190)
.+++.++..++|+.+ |+. | .+-++.+.++|+++|.+.+-... .+-++++++++. |+
T Consensus 42 ~~k~a~~~~~ipv~~--MIR-PRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~--gL 116 (241)
T COG3142 42 VIKEAVELSKIPVYV--MIR-PRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAG--GL 116 (241)
T ss_pred HHHHHHhhcCCceEE--EEe-cCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHcc--CC
Confidence 567776655555544 774 3 22356789999999999866421 112344444433 33
Q ss_pred cEEE--E--EcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcc-cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccH
Q 029661 76 KAGV--V--LNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 149 (190)
Q Consensus 76 ~~g~--~--i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~ 149 (190)
.+-+ + ..+ +|.+.++.+++. +..|+ ++||+ -..+.+++|+++.+. .+-.+.|.+.|||+++|+
T Consensus 117 ~vTFHrAFD~~~-d~~~ale~li~~Gv~RIL-------TsGg~~sa~eg~~~l~~li~~---a~gri~Im~GaGV~~~N~ 185 (241)
T COG3142 117 GVTFHRAFDECP-DPLEALEQLIELGVERIL-------TSGGKASALEGLDLLKRLIEQ---AKGRIIIMAGAGVRAENI 185 (241)
T ss_pred ceeeehhhhhcC-CHHHHHHHHHHCCCcEEe-------cCCCcCchhhhHHHHHHHHHH---hcCCEEEEeCCCCCHHHH
Confidence 3222 2 223 255666665554 66665 13333 234445555544444 334588999999999999
Q ss_pred HHH-HHcCCCEEEEcccc
Q 029661 150 YKV-IEAGANALVAGSAV 166 (190)
Q Consensus 150 ~~~-~~aGad~~VvGsaI 166 (190)
..+ ...|+.-+ =||++
T Consensus 186 ~~l~~~tg~~e~-H~s~~ 202 (241)
T COG3142 186 AELVLLTGVTEV-HGSAG 202 (241)
T ss_pred HHHHHhcCchhh-hhccc
Confidence 998 67777644 35554
No 223
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.57 E-value=0.00034 Score=57.32 Aligned_cols=78 Identities=13% Similarity=0.223 Sum_probs=53.4
Q ss_pred CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661 85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 162 (190)
Q Consensus 85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv 162 (190)
.|.+.++.+.+. +|.+.+.-......++. ..++-++++++.. +.++.++|||+ .+.+.++..+||+.+++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~---~n~~~i~~i~~~~-----~~pv~~~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRT---TMIDVVERTAETV-----FIPLTVGGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccCh---hhHHHHHHHHHhc-----CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 455555555443 66666655553322222 2355555555543 36899999999 89999999999999999
Q ss_pred cccccCCC
Q 029661 163 GSAVFGAK 170 (190)
Q Consensus 163 GsaI~~~~ 170 (190)
||+.++.+
T Consensus 103 gt~~~~~p 110 (254)
T TIGR00735 103 NTAAVKNP 110 (254)
T ss_pred ChhHhhCh
Confidence 99999754
No 224
>PRK06852 aldolase; Validated
Probab=97.57 E-value=0.00018 Score=60.46 Aligned_cols=159 Identities=15% Similarity=0.106 Sum_probs=96.8
Q ss_pred HHHHhcc-CCCCcEEEEEeec---------ChH----HHHHHHHHcC------CCEEEEcccCCC------cchHHHHHH
Q 029661 15 VVDALRP-VTDLPLDVHLMIV---------EPE----QRVPDFIKAG------ADIVSVHCEQSS------TIHLHRTLN 68 (190)
Q Consensus 15 ~v~~i~~-~~~~~i~~hlmv~---------dp~----~~i~~~~~~G------ad~v~vh~e~~~------~~~~~~~i~ 68 (190)
.++.... ..++++.+||=-. +|. .-++.+.+.| ||.|.+|..-++ .+++.++.+
T Consensus 82 ~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ 161 (304)
T PRK06852 82 LIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIY 161 (304)
T ss_pred HHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 3444333 3567888887542 341 1278888888 889999865432 234677788
Q ss_pred HHHHhCCcEEEEEcCCCC-------HHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCC
Q 029661 69 QIKDLGAKAGVVLNPATS-------LSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 136 (190)
Q Consensus 69 ~i~~~g~~~g~~i~p~t~-------~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~ 136 (190)
.++++|+-+...+.|.-+ .+.+..... .+|.|=+ -.|+..+ ...++.+ +++-.-.. ..
T Consensus 162 ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv--~y~~~~~-~g~~e~f---~~vv~~~g----~v 231 (304)
T PRK06852 162 EAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKV--NYPKKEG-ANPAELF---KEAVLAAG----RT 231 (304)
T ss_pred HHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEe--cCCCcCC-CCCHHHH---HHHHHhCC----CC
Confidence 899999998776554432 122222111 1577642 2233111 1123333 33333221 35
Q ss_pred eEEEeCCCCcc------cHHHHHH-cCCCEEEEcccccCCCCH--HHHHHHHHHhh
Q 029661 137 WIEVDGGVGPK------NAYKVIE-AGANALVAGSAVFGAKDY--AEAIKGIKTSK 183 (190)
Q Consensus 137 ~i~vdGGI~~e------~~~~~~~-aGad~~VvGsaI~~~~dp--~~~~~~l~~~~ 183 (190)
++.+.||=+.. .+...++ +||.++++||.||+.++| .+.++.+...+
T Consensus 232 pVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IV 287 (304)
T PRK06852 232 KVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAIT 287 (304)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHH
Confidence 78899998742 3455667 899999999999999888 78888887643
No 225
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.56 E-value=0.00023 Score=57.16 Aligned_cols=77 Identities=14% Similarity=0.281 Sum_probs=55.7
Q ss_pred CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661 85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 162 (190)
Q Consensus 85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv 162 (190)
.|.+.++.|.+. ++.+.+...+.-+.|+.- .++.++++++.. +.++.++|||+ .+.++.+.++|||.+|+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~---~~~~i~~i~~~~-----~~pi~~ggGI~~~ed~~~~~~~Ga~~vvl 100 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPV---NLPVIKKIVRET-----GVPVQVGGGIRSLEDVEKLLDLGVDRVII 100 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCC---cHHHHHHHHHhc-----CCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 566766666443 788887766643345432 244455555543 36899999999 79999999999999999
Q ss_pred cccccCC
Q 029661 163 GSAVFGA 169 (190)
Q Consensus 163 GsaI~~~ 169 (190)
||+.++.
T Consensus 101 gs~~l~d 107 (230)
T TIGR00007 101 GTAAVEN 107 (230)
T ss_pred ChHHhhC
Confidence 9998874
No 226
>PRK08185 hypothetical protein; Provisional
Probab=97.56 E-value=0.0041 Score=51.90 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=95.0
Q ss_pred HHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEcC----
Q 029661 16 VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLNP---- 83 (190)
Q Consensus 16 v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~p---- 83 (190)
++.+.+..++|+.+||==..-.+.++.+.+.|.+.|.+=....+. ++ -.++++.++.+|+.+ |. +..
T Consensus 60 ~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~ 138 (283)
T PRK08185 60 VRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTS 138 (283)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccc
Confidence 334444468899999855444557888999999998885432221 22 245566667777654 33 211
Q ss_pred ---------CCCHHHHHHhhcc--cceEEE-----EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--
Q 029661 84 ---------ATSLSAIECVLDV--VDLVLI-----MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-- 145 (190)
Q Consensus 84 ---------~t~~~~~~~~~~~--~d~i~~-----m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-- 145 (190)
-|+.+..+++.+. +|++.+ .+++++.. . ..-.+++++++++.. ++++..-||++
T Consensus 139 ~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~-k--p~L~~e~l~~I~~~~-----~iPLVlHGgsg~~ 210 (283)
T PRK08185 139 IEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDK-K--PELQMDLLKEINERV-----DIPLVLHGGSANP 210 (283)
T ss_pred cccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCC-C--CCcCHHHHHHHHHhh-----CCCEEEECCCCCC
Confidence 3456666777653 898876 44444311 1 112377777777654 47899999987
Q ss_pred cccHHHHHHcCCCEEEEcccccC
Q 029661 146 PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 146 ~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
.+.++++++.|+.-+=++|.+..
T Consensus 211 ~e~~~~ai~~GI~KiNi~T~l~~ 233 (283)
T PRK08185 211 DAEIAESVQLGVGKINISSDMKY 233 (283)
T ss_pred HHHHHHHHHCCCeEEEeChHHHH
Confidence 48999999999999999998865
No 227
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.56 E-value=0.0028 Score=54.20 Aligned_cols=123 Identities=20% Similarity=0.296 Sum_probs=79.0
Q ss_pred HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-CC-cEEEEEcCCC---------C
Q 029661 42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-GA-KAGVVLNPAT---------S 86 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g~-~~g~~i~p~t---------~ 86 (190)
.+.++|+|+|-+|.-.+ +. .-+.++++++|+. |. .+++=+++.. +
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence 45778999999985431 00 1245888889884 54 4666676531 2
Q ss_pred HHH---HHHhhcc--cceEEEEeeecC-CCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC-CCE
Q 029661 87 LSA---IECVLDV--VDLVLIMSVNPG-FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANA 159 (190)
Q Consensus 87 ~~~---~~~~~~~--~d~i~~m~v~pG-~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG-ad~ 159 (190)
.+. +.+.++. +|+|-+ ..| +..+. ....++..+++|+.. +.++.+.|||+++++.++++.| +|.
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~v---s~g~~~~~~-~~~~~~~~~~ik~~~-----~ipvi~~G~i~~~~a~~~l~~g~~D~ 310 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHL---VEPRVAGNP-EDQPPDFLDFLRKAF-----KGPLIAAGGYDAESAEAALADGKADL 310 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEE---ecCCCCCcc-cccchHHHHHHHHHc-----CCCEEEECCCCHHHHHHHHHcCCCCE
Confidence 232 2233322 688765 112 22222 223345556666654 3689999999999999999876 999
Q ss_pred EEEcccccCCCCHH
Q 029661 160 LVAGSAVFGAKDYA 173 (190)
Q Consensus 160 ~VvGsaI~~~~dp~ 173 (190)
+-+||++...++.-
T Consensus 311 V~~gR~~ladP~~~ 324 (338)
T cd02933 311 VAFGRPFIANPDLV 324 (338)
T ss_pred EEeCHhhhhCcCHH
Confidence 99999998877654
No 228
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=97.56 E-value=0.0029 Score=56.10 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=93.2
Q ss_pred HHHHHHhccC-CCCcEEEEEeecCh-----------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 13 PLVVDALRPV-TDLPLDVHLMIVEP-----------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~hlmv~dp-----------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
.+.++.+++. ++.++-..+-..|. ..+++.+.++|+|.+.+-.......++...++.+|++|..+.+.
T Consensus 63 ~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 63 WERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred HHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence 3577888775 67777655543332 34678899999999887644322456888999999999887554
Q ss_pred Ec----CCCCHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661 81 LN----PATSLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK 147 (190)
Q Consensus 81 i~----p~t~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e 147 (190)
++ |-++.+.+.+++ + .+|.|.+ ....|-..+..+.+.++.+|+.. +.+|.+ +.|...-
T Consensus 143 i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i----~Dt~G~l~P~~v~~lv~alk~~~-----~~pi~~H~Hnt~GlA~A 213 (448)
T PRK12331 143 ISYTTSPVHTIDYFVKLAKEMQEMGADSICI----KDMAGILTPYVAYELVKRIKEAV-----TVPLEVHTHATSGIAEM 213 (448)
T ss_pred EEeecCCCCCHHHHHHHHHHHHHcCCCEEEE----cCCCCCCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCCcHHH
Confidence 43 334444444433 2 2676654 34456555566677777777654 256666 7788877
Q ss_pred cHHHHHHcCCCEEEE
Q 029661 148 NAYKVIEAGANALVA 162 (190)
Q Consensus 148 ~~~~~~~aGad~~Vv 162 (190)
|.-..+++|||++=+
T Consensus 214 N~laAieaGad~vD~ 228 (448)
T PRK12331 214 TYLKAIEAGADIIDT 228 (448)
T ss_pred HHHHHHHcCCCEEEe
Confidence 888889999997643
No 229
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.55 E-value=0.00017 Score=58.25 Aligned_cols=75 Identities=16% Similarity=0.329 Sum_probs=52.6
Q ss_pred CCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEc
Q 029661 85 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 163 (190)
Q Consensus 85 t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvG 163 (190)
+|.+.++.|.+.++.+.+...+-...|+.- -++-++++++. ...++.++|||+ .+.++.+.+.|+|.+|+|
T Consensus 31 dp~~~a~~~~~~~~~l~ivDldga~~g~~~---n~~~i~~i~~~-----~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 31 DPVEIALRFSEYVDKIHVVDLDGAFEGKPK---NLDVVKNIIRE-----TGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CHHHHHHHHHHhCCEEEEEECcchhcCCcc---hHHHHHHHHhh-----CCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 567766776555787777555422234322 24444554443 246899999999 799999999999999999
Q ss_pred cccc
Q 029661 164 SAVF 167 (190)
Q Consensus 164 saI~ 167 (190)
|+.+
T Consensus 103 taa~ 106 (228)
T PRK04128 103 TKAF 106 (228)
T ss_pred chhc
Confidence 9988
No 230
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.53 E-value=0.011 Score=48.03 Aligned_cols=130 Identities=16% Similarity=0.286 Sum_probs=85.1
Q ss_pred CCCcEEEEEeecChHHHHHHH--HHcCCCEEEEcccC----------CC-----cchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661 23 TDLPLDVHLMIVEPEQRVPDF--IKAGADIVSVHCEQ----------SS-----TIHLHRTLNQIKDLGAKAGVVLNPAT 85 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~~--~~~Gad~v~vh~e~----------~~-----~~~~~~~i~~i~~~g~~~g~~i~p~t 85 (190)
.+.|+.+.++-.+|+.+.+.+ .+.+++.+=+-..+ ++ .+.+.++++++|+.++.+.+=+.+..
T Consensus 71 ~~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~ 150 (233)
T cd02911 71 SNVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGV 150 (233)
T ss_pred cCCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 467999999999998775443 23356777763221 00 22347788889888888777676654
Q ss_pred --CHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 86 --SLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 86 --~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
+...+.+.+. .+|.+-+-+..+| .+..++.|++++ .+++|..-|||+ .+.+.++.+.|||.+
T Consensus 151 ~~~~~~la~~l~~aG~d~ihv~~~~~g------~~ad~~~I~~i~-------~~ipVIgnGgI~s~eda~~~l~~GaD~V 217 (233)
T cd02911 151 DVDDEELARLIEKAGADIIHVDAMDPG------NHADLKKIRDIS-------TELFIIGNNSVTTIESAKEMFSYGADMV 217 (233)
T ss_pred CcCHHHHHHHHHHhCCCEEEECcCCCC------CCCcHHHHHHhc-------CCCEEEEECCcCCHHHHHHHHHcCCCEE
Confidence 2333333333 2786543222222 122355566654 246888999997 799999999999999
Q ss_pred EEccc
Q 029661 161 VAGSA 165 (190)
Q Consensus 161 VvGsa 165 (190)
-+||+
T Consensus 218 miGR~ 222 (233)
T cd02911 218 SVARA 222 (233)
T ss_pred EEcCC
Confidence 99999
No 231
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=97.53 E-value=0.0036 Score=53.05 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=78.4
Q ss_pred HHHHHHHHcC--CCEEEEcccCCCcchHHHHHHHHHHhCCcEEE-EEcCCCCHHHHHHhhc-ccceEEEEeeecCCC---
Q 029661 38 QRVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--- 110 (190)
Q Consensus 38 ~~i~~~~~~G--ad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~-~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~--- 110 (190)
+.++.+.++| +|.|.+-.-.+.....-+.++.+|+.--.+.+ .=|. .+.+..+.+++ .+|.|.+ ++.||..
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V-~~G~G~~~~t 174 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV-GTPEAVRELENAGADATKV-GIGPGKVCIT 174 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC-CCHHHHHHHHHcCcCEEEE-CCCCCccccc
Confidence 4577789988 79988844322234466678888875422322 2223 34455566554 3788763 4445431
Q ss_pred ----CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 111 ----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 111 ----gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
|..+....+.-|.++++.. +.+|..||||+ ..++.+++.+|||.+-+||.+-..
T Consensus 175 r~~~g~g~~~~~l~ai~ev~~a~-----~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~ 233 (321)
T TIGR01306 175 KIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGH 233 (321)
T ss_pred eeeeccCCCchHHHHHHHHHHhc-----CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCc
Confidence 1122222344566665532 36899999999 578889999999999999987653
No 232
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.50 E-value=0.00061 Score=56.70 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhC---CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661 62 HLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 137 (190)
Q Consensus 62 ~~~~~i~~i~~~g---~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~ 137 (190)
.+.+.++.+|++. .++-+-+ + .++.+.+.++ .+|.|++ +. |.+ +.++++.++++. ..+
T Consensus 179 ~i~~ai~~~r~~~~~~~kIeVEv--~-tleea~ea~~~gaDiI~L-------Dn--~s~---e~l~~av~~~~~---~~~ 240 (281)
T PRK06106 179 GVREAIRRARAGVGHLVKIEVEV--D-TLDQLEEALELGVDAVLL-------DN--MTP---DTLREAVAIVAG---RAI 240 (281)
T ss_pred cHHHHHHHHHHhCCCCCcEEEEe--C-CHHHHHHHHHcCCCEEEe-------CC--CCH---HHHHHHHHHhCC---Cce
Confidence 4778888888863 3444444 3 4455556554 4898875 22 333 344555554433 356
Q ss_pred EEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 138 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 138 i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
+++.||||++|++++.+.|+|++++|+...+++
T Consensus 241 leaSGGI~~~ni~~yA~tGVD~Is~Galthsa~ 273 (281)
T PRK06106 241 TEASGRITPETAPAIAASGVDLISVGWLTHSAP 273 (281)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 999999999999999999999999999766553
No 233
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00071 Score=54.81 Aligned_cols=79 Identities=14% Similarity=0.268 Sum_probs=54.6
Q ss_pred CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
..+|.+..+.+.++ +.++-+.-.+-.+.|++-. .+-|+++.+.. +.+++|.|||+ .+.+..+.++|++-+
T Consensus 30 ~~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n---~~~i~~i~~~~-----~~~vQvGGGIRs~~~v~~ll~~G~~rV 101 (241)
T COG0106 30 SDDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRN---LEAIKEILEAT-----DVPVQVGGGIRSLEDVEALLDAGVARV 101 (241)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeeccccccCCccc---HHHHHHHHHhC-----CCCEEeeCCcCCHHHHHHHHHCCCCEE
Confidence 35677777777653 6666555555444444333 33344444443 46899999999 799999999999999
Q ss_pred EEcccccCC
Q 029661 161 VAGSAVFGA 169 (190)
Q Consensus 161 VvGsaI~~~ 169 (190)
|+||.-++.
T Consensus 102 iiGt~av~~ 110 (241)
T COG0106 102 IIGTAAVKN 110 (241)
T ss_pred EEecceecC
Confidence 999987653
No 234
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.47 E-value=0.00053 Score=56.07 Aligned_cols=79 Identities=14% Similarity=0.255 Sum_probs=56.3
Q ss_pred CCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661 84 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 161 (190)
Q Consensus 84 ~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V 161 (190)
..|.+..+.+.+ .++.+.+........++ +..++-++++++.. ++++.++|||+ .+++.++.+.|+|.++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~-----~ipv~~~GGi~s~~~~~~~l~~Ga~~Vi 101 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQV-----FIPLTVGGGIRSVEDARRLLRAGADKVS 101 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhC-----CCCEEeeCCCCCHHHHHHHHHcCCCEEE
Confidence 355666666543 36777776665422222 34466666666543 47899999999 7999999999999999
Q ss_pred EcccccCCC
Q 029661 162 AGSAVFGAK 170 (190)
Q Consensus 162 vGsaI~~~~ 170 (190)
+||+.++.+
T Consensus 102 igt~~l~~p 110 (253)
T PRK02083 102 INSAAVANP 110 (253)
T ss_pred EChhHhhCc
Confidence 999998854
No 235
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=97.46 E-value=0.0016 Score=52.77 Aligned_cols=162 Identities=20% Similarity=0.291 Sum_probs=98.0
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEE
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
+-+..|++....++..-+ +--.++++.+.+...+.+|+-+|.- ..+.+..+++.+++.|+++.++
T Consensus 53 ~Dv~~L~~~~~~~lNlE~--a~t~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLF 130 (239)
T PF03740_consen 53 RDVRRLRELVKTPLNLEM--APTEEMVDIALKVKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLF 130 (239)
T ss_dssp HHHHHHHHH-SSEEEEEE--ESSHHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHcccCEEecc--CCCHHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEE
Confidence 346667776556655533 3235688899999999999976541 0134789999999999999999
Q ss_pred EcCCCC-HHHHHHhhcccceEEEEeeecCCCCcccc-----h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHH
Q 029661 81 LNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSFI-----E-SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI 153 (190)
Q Consensus 81 i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~~-----~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~ 153 (190)
+.|+.. ++...++ .+|+|-+ +.|.....+. . +.++++.....+..+. .+.+.++.|+|.+|++.+.
T Consensus 131 iDP~~~qi~~A~~~--Gad~VEL---hTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~l--GL~VnAGHgL~y~N~~~i~ 203 (239)
T PF03740_consen 131 IDPDPEQIEAAKEL--GADRVEL---HTGPYANAFDDAEEAEEELLERLRDAARYAHEL--GLGVNAGHGLNYDNVRPIA 203 (239)
T ss_dssp E-S-HHHHHHHHHT--T-SEEEE---ETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHT--T-EEEEETT--TTTHHHHH
T ss_pred eCCCHHHHHHHHHc--CCCEEEE---ehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHc--CCEEecCCCCCHHHHHHHH
Confidence 998633 2333332 4899976 4443333331 1 1246666666665554 4678999999999999886
Q ss_pred Hc-CCCEEEEcccccCC---CCHHHHHHHHHHhhc
Q 029661 154 EA-GANALVAGSAVFGA---KDYAEAIKGIKTSKR 184 (190)
Q Consensus 154 ~a-Gad~~VvGsaI~~~---~dp~~~~~~l~~~~~ 184 (190)
+. +..-+-+|-+|+.. --..++++++++.++
T Consensus 204 ~i~~i~EvnIGHaiia~Al~~Gl~~aV~~m~~~~~ 238 (239)
T PF03740_consen 204 AIPPIEEVNIGHAIIARALFVGLEEAVREMKELMK 238 (239)
T ss_dssp TSTTEEEEEE-HHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 54 35667788887753 256778888887765
No 236
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.45 E-value=0.0049 Score=52.35 Aligned_cols=126 Identities=17% Similarity=0.270 Sum_probs=79.5
Q ss_pred HHHHHHHcC--CCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCC--CCc
Q 029661 39 RVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQ 112 (190)
Q Consensus 39 ~i~~~~~~G--ad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~--~gq 112 (190)
.++.+.++| +|.+++-.-.+..+..-+.++++|+.- -...++=|..|+-. .+.+++ .+|.|.+ ++=||. +++
T Consensus 111 r~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~-a~~Li~aGAD~ikV-giGpGSicttR 188 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEM-VEELILSGADIVKV-GIGPGSVCTTR 188 (343)
T ss_pred HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHH-HHHHHHcCCCEEEE-cccCCCcccCc
Confidence 467788885 999998433322345667788888753 23333444555543 445444 5887754 544552 222
Q ss_pred ccc--h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 113 SFI--E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 113 ~~~--~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
... + ..+.-+.+..+... ++..+|..||||+ ..++.+.+.+|||.+-+|+.+-.
T Consensus 189 ~~~Gvg~pqltAv~~~a~aa~--~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG 246 (343)
T TIGR01305 189 TKTGVGYPQLSAVIECADAAH--GLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAG 246 (343)
T ss_pred eeCCCCcCHHHHHHHHHHHhc--cCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhC
Confidence 221 1 23555555555543 2457899999999 67888999999999999976654
No 237
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=97.45 E-value=0.002 Score=54.20 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcC-CCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCC
Q 029661 119 VKKISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170 (190)
Q Consensus 119 ~~ki~~~~~~~~~~~-~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~ 170 (190)
.+-++++++.++..+ .+..|++.||||++++.++.+.|+|++=+||.+.+++
T Consensus 228 ~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~~ 280 (302)
T cd01571 228 RYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKAP 280 (302)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcCCCEEECCcccCCCC
Confidence 334455555555443 4578999999999999999999999999999998763
No 238
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=97.44 E-value=0.0016 Score=55.70 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=96.6
Q ss_pred HHHHHhccCCCCc------------EEEEEeec--Ch-HHHHHHHHHc-CCCEEEEcccCCCcchHHHHHHHHHHhCCcE
Q 029661 14 LVVDALRPVTDLP------------LDVHLMIV--EP-EQRVPDFIKA-GADIVSVHCEQSSTIHLHRTLNQIKDLGAKA 77 (190)
Q Consensus 14 ~~v~~i~~~~~~~------------i~~hlmv~--dp-~~~i~~~~~~-Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~ 77 (190)
..+++++..++.| +-+.+++. ++ ....+.+++. |.-.++++.-. .+...++.++..|.++
T Consensus 55 ~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~----~~~~~i~~~~~~g~~v 130 (336)
T COG2070 55 AEIRKIRALTDKPFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGA----PPAEFVARLKAAGIKV 130 (336)
T ss_pred HHHHHHHHhcCCcchhcccccccccchhheecccccchHHhhhhHHhcCCCCEEeccCCC----CcHHHHHHHHHcCCeE
Confidence 4556666666666 44445552 22 3455655555 88888887642 3677899999999887
Q ss_pred EEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCC-Cc-ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHH
Q 029661 78 GVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG-GQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 153 (190)
Q Consensus 78 g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~-gq-~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~ 153 (190)
...+. ..++.+.... -+|.|+..+-+.|.- |. ...+.+...+.++++.... +++...|||- .+.+....
T Consensus 131 ~~~v~---~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~----iPViAAGGI~dg~~i~AAl 203 (336)
T COG2070 131 IHSVI---TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG----IPVIAAGGIADGRGIAAAL 203 (336)
T ss_pred EEEeC---CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcC----CCEEEecCccChHHHHHHH
Confidence 76653 4555555433 378887766654421 32 2245567777777776531 7899999999 68888889
Q ss_pred HcCCCEEEEccccc
Q 029661 154 EAGANALVAGSAVF 167 (190)
Q Consensus 154 ~aGad~~VvGsaI~ 167 (190)
..|||.+-+||...
T Consensus 204 alGA~gVq~GT~Fl 217 (336)
T COG2070 204 ALGADGVQMGTRFL 217 (336)
T ss_pred HhccHHHHhhhhhh
Confidence 99999999999755
No 239
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.42 E-value=0.014 Score=49.57 Aligned_cols=144 Identities=10% Similarity=0.168 Sum_probs=91.2
Q ss_pred CCCcEEEEEeecChHHHHHH---HHHcCCCEEEEcccCC---------------CcchHHHHHHHHHHh-CCcEEEEEcC
Q 029661 23 TDLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP 83 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~vh~e~~---------------~~~~~~~~i~~i~~~-g~~~g~~i~p 83 (190)
.+.|+.+.|.-.||+.+.+. +.+.|+|.|=++.-+. ..+-+.++++++++. +..+.+=+..
T Consensus 53 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~ 132 (318)
T TIGR00742 53 EESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI 132 (318)
T ss_pred CCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46799999999999887543 4567999999875431 012256788888874 6666665544
Q ss_pred CC----CHHHHHHh---hc--ccceEEEEeeec---CCCCcc---cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cc
Q 029661 84 AT----SLSAIECV---LD--VVDLVLIMSVNP---GFGGQS---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK 147 (190)
Q Consensus 84 ~t----~~~~~~~~---~~--~~d~i~~m~v~p---G~~gq~---~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e 147 (190)
.. +.+...++ +. .+|.|.+.+... |++|.. ..+..++.++++++... ++++..-|||. .+
T Consensus 133 g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~----~ipVi~NGdI~s~~ 208 (318)
T TIGR00742 133 GIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP----HLTIEINGGIKNSE 208 (318)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC----CCcEEEECCcCCHH
Confidence 21 11222222 22 267765543322 223321 22334666666665432 47888899998 78
Q ss_pred cHHHHHHcCCCEEEEcccccCCCC
Q 029661 148 NAYKVIEAGANALVAGSAVFGAKD 171 (190)
Q Consensus 148 ~~~~~~~aGad~~VvGsaI~~~~d 171 (190)
++.++.+ |+|.+-+|++.+..+.
T Consensus 209 da~~~l~-g~dgVMigRgal~nP~ 231 (318)
T TIGR00742 209 QIKQHLS-HVDGVMVGREAYENPY 231 (318)
T ss_pred HHHHHHh-CCCEEEECHHHHhCCH
Confidence 8888875 9999999999887543
No 240
>PRK06256 biotin synthase; Validated
Probab=97.41 E-value=0.019 Score=48.69 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=92.7
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc------------chHHHHHHHHHHhCCcEE--E
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST------------IHLHRTLNQIKDLGAKAG--V 79 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~------------~~~~~~i~~i~~~g~~~g--~ 79 (190)
+.++.|++.+++.+.+++-..+ .+.++.+.++|++.+++..|+ +. ++..+.++.+++.|+++. +
T Consensus 130 e~i~~i~~~~~i~~~~~~g~l~-~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 130 EAVKAIKEETDLEICACLGLLT-EEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred HHHHHHHhcCCCcEEecCCcCC-HHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCe
Confidence 4466666545544444433333 346788999999999887665 21 223467788888898875 3
Q ss_pred EEcCCCCHHHHHHhh---c--ccceEEEEeee--cCCC--Cccc--chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--c
Q 029661 80 VLNPATSLSAIECVL---D--VVDLVLIMSVN--PGFG--GQSF--IESQVKKISDLRRMCLEKGVNPWIEVDGGVG--P 146 (190)
Q Consensus 80 ~i~p~t~~~~~~~~~---~--~~d~i~~m~v~--pG~~--gq~~--~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~ 146 (190)
.+......+...+.+ . .+|.+.+.... ||+. .++. ..+.++.+.-+|-+.+ +..|.+.||=. .
T Consensus 208 I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p----~~~I~~~~gr~~~~ 283 (336)
T PRK06256 208 IIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINP----DKEIRIAGGREVNL 283 (336)
T ss_pred EEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCeeEecCchhhhc
Confidence 443443433333322 2 25666554443 5643 2221 2344555566666654 35687888863 3
Q ss_pred ccHH-HHHHcCCCEEEEcccccCC-CCHHHHHHHHHH
Q 029661 147 KNAY-KVIEAGANALVAGSAVFGA-KDYAEAIKGIKT 181 (190)
Q Consensus 147 e~~~-~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~~ 181 (190)
.... ... +|||.+++|-+++.. .++.+-.+-+++
T Consensus 284 ~~~~~~~~-~g~~~~~~g~~lt~~g~~~~~d~~~~~~ 319 (336)
T PRK06256 284 RSLQPLGL-GGANSVIVGNYLTTVGQPATADLDMIED 319 (336)
T ss_pred hhhHHHHh-ccCceeeECCcccCCCCChHHHHHHHHH
Confidence 3333 334 799999999999865 445444444443
No 241
>PLN02979 glycolate oxidase
Probab=97.41 E-value=0.0018 Score=55.73 Aligned_cols=122 Identities=18% Similarity=0.288 Sum_probs=78.0
Q ss_pred cccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC
Q 029661 4 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 83 (190)
Q Consensus 4 ~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p 83 (190)
.|.|.+ ..+.++.||+.++.|+.+.=- .++ +..+.+.++|+|.|.+-.-- . ++
T Consensus 205 ~~~~~l--tW~dl~wlr~~~~~PvivKgV-~~~-~dA~~a~~~Gvd~I~VsnhG--G----------rq----------- 257 (366)
T PLN02979 205 QIDRTL--SWKDVQWLQTITKLPILVKGV-LTG-EDARIAIQAGAAGIIVSNHG--A----------RQ----------- 257 (366)
T ss_pred cCCCCC--CHHHHHHHHhccCCCEEeecC-CCH-HHHHHHHhcCCCEEEECCCC--c----------CC-----------
Confidence 344544 447799999888888888432 343 35667888999998874331 1 00
Q ss_pred CCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661 84 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 162 (190)
Q Consensus 84 ~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv 162 (190)
.| ..+.+++-+.++++.... +++|.+||||+ ..++-+....|||.+-+
T Consensus 258 -------------ld---------------~~p~t~~~L~ei~~~~~~---~~~Vi~dGGIr~G~Di~KALALGAdaV~i 306 (366)
T PLN02979 258 -------------LD---------------YVPATISALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFI 306 (366)
T ss_pred -------------CC---------------CchhHHHHHHHHHHHhCC---CCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 01 113455566666655432 46899999999 46788888999999999
Q ss_pred ccccc-C--C---CCHHHHHHHHHHhh
Q 029661 163 GSAVF-G--A---KDYAEAIKGIKTSK 183 (190)
Q Consensus 163 GsaI~-~--~---~dp~~~~~~l~~~~ 183 (190)
|+.+. . + +.....++.+++.+
T Consensus 307 Grp~L~~la~~G~~Gv~~~l~~l~~El 333 (366)
T PLN02979 307 GRPVVFSLAAEGEAGVRKVLQMLRDEF 333 (366)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99754 2 1 23345555555543
No 242
>PLN02826 dihydroorotate dehydrogenase
Probab=97.41 E-value=0.0086 Score=52.51 Aligned_cols=140 Identities=20% Similarity=0.222 Sum_probs=89.5
Q ss_pred cEEEEEeec-----ChHHHHHHHHHcC--CCEEEEcccCCC---------cchHHHHHHHHHHh----------CCcEEE
Q 029661 26 PLDVHLMIV-----EPEQRVPDFIKAG--ADIVSVHCEQSS---------TIHLHRTLNQIKDL----------GAKAGV 79 (190)
Q Consensus 26 ~i~~hlmv~-----dp~~~i~~~~~~G--ad~v~vh~e~~~---------~~~~~~~i~~i~~~----------g~~~g~ 79 (190)
++-+-+--+ .+++|.+.+..++ ||++.+-..+.. .+.+.++++.+++. .+.+.+
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~v 267 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLV 267 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 566655333 2567876665555 999998644310 12345666665532 234455
Q ss_pred EEcCCCCHHHHHHhhc-----ccceEEEEee---------------e-cCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 80 VLNPATSLSAIECVLD-----VVDLVLIMSV---------------N-PGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 80 ~i~p~t~~~~~~~~~~-----~~d~i~~m~v---------------~-pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
=+.|+.+.+.+.++++ .+|-|.+--. . -|.+|....+..++-++++++..+ .+++|
T Consensus 268 KlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~---~~ipI 344 (409)
T PLN02826 268 KIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTR---GKIPL 344 (409)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhC---CCCcE
Confidence 5878876544444332 2666644210 1 134566666777888888777654 24789
Q ss_pred EEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 139 EVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 139 ~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
...|||. .+++-+.+.+||+.+=+||+++.
T Consensus 345 IgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 345 VGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred EEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 9999999 68999999999999999999765
No 243
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=97.39 E-value=0.0028 Score=56.38 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=93.4
Q ss_pred HHHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 13 PLVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
.+.++.+++. ++.++.+.+-..| | ..|++.+.++|+|.+.+-......+++...++.+|+.|..+...
T Consensus 62 ~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 141 (467)
T PRK14041 62 WERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGA 141 (467)
T ss_pred HHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 4677888775 6777776555433 2 34688899999998887644322456788999999999988755
Q ss_pred Ec----CCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661 81 LN----PATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK 147 (190)
Q Consensus 81 i~----p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e 147 (190)
++ |.++.+.+.++.. .+|.|.+ ....|...+..+.+.++.+|+..+ .+|.+ +-|...-
T Consensus 142 i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i----~Dt~G~l~P~~v~~Lv~~lk~~~~-----vpI~~H~Hnt~GlA~A 212 (467)
T PRK14041 142 ISYTVSPVHTLEYYLEFARELVDMGVDSICI----KDMAGLLTPKRAYELVKALKKKFG-----VPVEVHSHCTTGLASL 212 (467)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCccCCcCHHHHHHHHHHHHHhcC-----CceEEEecCCCCcHHH
Confidence 43 5555555444433 2676654 344565556666777777776542 34543 5667667
Q ss_pred cHHHHHHcCCCEEE
Q 029661 148 NAYKVIEAGANALV 161 (190)
Q Consensus 148 ~~~~~~~aGad~~V 161 (190)
|.-..+++|||++=
T Consensus 213 N~laAieaGad~vD 226 (467)
T PRK14041 213 AYLAAVEAGADMFD 226 (467)
T ss_pred HHHHHHHhCCCEEE
Confidence 78788999999763
No 244
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=97.38 E-value=0.0056 Score=51.14 Aligned_cols=144 Identities=18% Similarity=0.219 Sum_probs=90.4
Q ss_pred CCcEEEEEeecC---hHHHHHHH--HHcCCCEEEEcccCCC----------cchHHHHHHHHHHh-CCcEEEEEcCCCC-
Q 029661 24 DLPLDVHLMIVE---PEQRVPDF--IKAGADIVSVHCEQSS----------TIHLHRTLNQIKDL-GAKAGVVLNPATS- 86 (190)
Q Consensus 24 ~~~i~~hlmv~d---p~~~i~~~--~~~Gad~v~vh~e~~~----------~~~~~~~i~~i~~~-g~~~g~~i~p~t~- 86 (190)
++|+.+-+.-.. .++|.+.+ .+.|||.+.+-..+.. .+....+++..++. .+.+.+=+.|+.+
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~ 175 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTD 175 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSC
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCc
Confidence 568888666665 67776654 3389999998533210 11234455566665 5666777998644
Q ss_pred HH---HHHHhh-cccceEE----EEeee----------c-----CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661 87 LS---AIECVL-DVVDLVL----IMSVN----------P-----GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 143 (190)
Q Consensus 87 ~~---~~~~~~-~~~d~i~----~m~v~----------p-----G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG 143 (190)
.+ .+.... ..+|.|. +.... + |.+|....|..++.++++++..++ +++|...||
T Consensus 176 ~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~---~i~Iig~GG 252 (295)
T PF01180_consen 176 IEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQ---DIPIIGVGG 252 (295)
T ss_dssp HHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTT---SSEEEEESS
T ss_pred hHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcccc---ceEEEEeCC
Confidence 32 222222 2366655 21111 1 135556667788888888887652 488999999
Q ss_pred CC-cccHHHHHHcCCCEEEEcccc-cCCC
Q 029661 144 VG-PKNAYKVIEAGANALVAGSAV-FGAK 170 (190)
Q Consensus 144 I~-~e~~~~~~~aGad~~VvGsaI-~~~~ 170 (190)
|. .+++.+++.+|||.+=++|++ ++.+
T Consensus 253 I~s~~da~e~l~aGA~~Vqv~Sal~~~Gp 281 (295)
T PF01180_consen 253 IHSGEDAIEFLMAGASAVQVCSALIYRGP 281 (295)
T ss_dssp --SHHHHHHHHHHTESEEEESHHHHHHGT
T ss_pred cCCHHHHHHHHHhCCCHheechhhhhcCc
Confidence 99 799999999999999999998 5544
No 245
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=97.38 E-value=0.0034 Score=53.93 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcC-CCCeEE
Q 029661 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPWIE 139 (190)
Q Consensus 61 ~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~-~~~~i~ 139 (190)
+++.+.++.++..|.++ ..+..+|+-+.+.+++...+..+ ......-+ ..+.++++|+.+++.+ .++.|.
T Consensus 214 d~~~~al~~a~~~g~~l-~gVRlDs~gdl~DK~~~~~~~~~-----~~~~~~G~---~~~l~~~vr~~Ld~~g~~~vkI~ 284 (352)
T PRK07188 214 DVITDSLKVAREFGDKL-KGVRVDTSKNMIDKYFIRHPEVL-----GTFDPRGV---NPELIKALRKALDENGGKHVKII 284 (352)
T ss_pred ccHHHHHHHHHHhCCCc-cEEEeCCcchHhhhhcccccccc-----cccccccc---cHHHHHHHHHHHhhCCCCCcEEE
Confidence 35666777777766655 12333444333444432222211 01111113 3445677788787777 778999
Q ss_pred EeCCCCcccHHHHHHcC--CCEEEEcccccCC
Q 029661 140 VDGGVGPKNAYKVIEAG--ANALVAGSAVFGA 169 (190)
Q Consensus 140 vdGGI~~e~~~~~~~aG--ad~~VvGsaI~~~ 169 (190)
+.||||++++.++.++| +|++=|||+|...
T Consensus 285 aSgGine~~I~~~~~~g~piD~~GVGt~l~~~ 316 (352)
T PRK07188 285 VSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI 316 (352)
T ss_pred EeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence 99999999999999999 7999999999875
No 246
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.37 E-value=0.017 Score=51.38 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=91.4
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh---CCcEEEEEcCCCCH
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSL 87 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~---g~~~g~~i~p~t~~ 87 (190)
..++..++|.+......+.=+.-.+|+...+.+.+++.|.+-+|..- ++ +.++.+++. ++++.=++...+..
T Consensus 293 V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e----~~-~~~~~l~~~~~~~~~iikai~v~~~~ 367 (454)
T PRK09427 293 VSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE----DQ-AYIDALREALPKTCQIWKAISVGDTL 367 (454)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC----CH-HHHHHHHhhcCCCCeEEEEeecCchh
Confidence 35667777766422333332223466777778889999999999852 23 345566653 35666566664433
Q ss_pred HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661 88 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 88 ~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~ 167 (190)
. ..++ ..+|++++=+ .+|.+|+.|.-..+ . ... ..++...||+|++|+.+++..++.++=+-|.+=
T Consensus 368 ~-~~~~-~~~d~~LlDs-~~GGtG~~~DW~~l---~---~~~-----~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE 433 (454)
T PRK09427 368 P-ARDL-QHVDRYLLDN-GQGGTGQTFDWSLL---P---GQS-----LDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVE 433 (454)
T ss_pred h-hhhh-cCCCEEEEcC-CCCCCCCccChHHh---h---hcc-----cCCEEEECCCCHHHHHHHHhcCCCEEEeCCccc
Confidence 2 2222 2378887654 45667888764322 1 111 246789999999999999888999888877775
Q ss_pred CC---CCHHH
Q 029661 168 GA---KDYAE 174 (190)
Q Consensus 168 ~~---~dp~~ 174 (190)
.+ .|+..
T Consensus 434 ~~pG~KD~~K 443 (454)
T PRK09427 434 SAPGIKDAQK 443 (454)
T ss_pred CCCCCcCHHH
Confidence 33 46653
No 247
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.36 E-value=0.007 Score=55.47 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=92.2
Q ss_pred HHHHHhccC-CCCcEEEEEeecCh-----------HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEP-----------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 81 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp-----------~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i 81 (190)
+.++.+|+. ++.++-+.+-..|. ..+++.+.++|.|.+.+-.......++...++.+|++|+.+...+
T Consensus 64 e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i 143 (592)
T PRK09282 64 ERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTI 143 (592)
T ss_pred HHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEE
Confidence 445666665 67777765544332 346888999999988876443224568888999999999887655
Q ss_pred ----cCCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCccc
Q 029661 82 ----NPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKN 148 (190)
Q Consensus 82 ----~p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~ 148 (190)
+|.++.+.+.+++. .+|.|.+ ....|...+..+.+.++.+|+..+ .+|.+ +.|....|
T Consensus 144 ~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i----~Dt~G~~~P~~~~~lv~~lk~~~~-----~pi~~H~Hnt~Gla~An 214 (592)
T PRK09282 144 SYTTSPVHTIEKYVELAKELEEMGCDSICI----KDMAGLLTPYAAYELVKALKEEVD-----LPVQLHSHCTSGLAPMT 214 (592)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCcCCCcCHHHHHHHHHHHHHhCC-----CeEEEEEcCCCCcHHHH
Confidence 34344444444332 2676654 334455555666677777776542 45665 88888888
Q ss_pred HHHHHHcCCCEEEE
Q 029661 149 AYKVIEAGANALVA 162 (190)
Q Consensus 149 ~~~~~~aGad~~Vv 162 (190)
.-..+++|||.+=.
T Consensus 215 ~laAv~aGad~vD~ 228 (592)
T PRK09282 215 YLKAVEAGVDIIDT 228 (592)
T ss_pred HHHHHHhCCCEEEe
Confidence 88889999997643
No 248
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=97.36 E-value=0.0034 Score=49.94 Aligned_cols=124 Identities=18% Similarity=0.274 Sum_probs=76.7
Q ss_pred HHHHHHcCCCEEEE-cccCC-CcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEEEeeec----CCCCcc
Q 029661 40 VPDFIKAGADIVSV-HCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP----GFGGQS 113 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~~-~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~p----G~~gq~ 113 (190)
.+++.++|++++++ |.|-- ...++.+-++.+.++|+.+.+.+. ...+.+.. ....- +++..+| |+ |+.
T Consensus 74 ~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~--~v~~q~~~--~~~~~-~vIAYEPvWAIGt-G~~ 147 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTN--NVLTTAAA--AALEP-DVVAVEPPELIGT-GIP 147 (205)
T ss_pred HHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEH--HHHHHHHh--hhhcC-eEEEECCHHHhCC-CCC
Confidence 67899999999999 54420 012377788889999999999882 11111111 11111 2334566 53 544
Q ss_pred cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHH-HHcCCCEEEEcccccCC
Q 029661 114 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGA 169 (190)
Q Consensus 114 ~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~-~~aGad~~VvGsaI~~~ 169 (190)
-.++-.+.+.+.-+...+...+++|..+|+++++|..++ .+.++|++-+||+..++
T Consensus 148 as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 148 VSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred CCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 333333333322222222234578999999999988865 67789999999987654
No 249
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=97.36 E-value=0.0064 Score=49.08 Aligned_cols=160 Identities=18% Similarity=0.285 Sum_probs=106.0
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEE
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
+-+..|++....++..- .+--.++++.+.+...+.+|+-+|.- ..+.+..+++.+++.|+++.++
T Consensus 52 ~Dv~~L~~~~~~~lNlE--~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLF 129 (234)
T cd00003 52 RDVRLLRELVRTELNLE--MAPTEEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLF 129 (234)
T ss_pred HHHHHHHHHcCCCEEec--cCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEE
Confidence 34566666544455443 22235688999999999999976641 1134788999999999999999
Q ss_pred EcCCCC-HHHHHHhhcccceEEEEeeecCCCCccc----chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH-
Q 029661 81 LNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSF----IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE- 154 (190)
Q Consensus 81 i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~----~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~- 154 (190)
+.|+.. ++...++ .+|.|-+. .|.....+ ...-++++...-++..+. .+.+.++-|+|.+|++.+.+
T Consensus 130 iDPd~~qi~~A~~~--GAd~VELh---TG~Ya~a~~~~~~~~el~~i~~aa~~a~~~--GL~VnAGHgLny~Nv~~i~~i 202 (234)
T cd00003 130 IDPDPEQIEAAKEV--GADRVELH---TGPYANAYDKAEREAELERIAKAAKLAREL--GLGVNAGHGLNYENVKPIAKI 202 (234)
T ss_pred eCCCHHHHHHHHHh--CcCEEEEe---chhhhcCCCchhHHHHHHHHHHHHHHHHHc--CCEEecCCCCCHHHHHHHHhC
Confidence 998633 3333332 58998763 34332222 233466676666665554 46788999999999998854
Q ss_pred cCCCEEEEcccccCC---CCHHHHHHHHHHh
Q 029661 155 AGANALVAGSAVFGA---KDYAEAIKGIKTS 182 (190)
Q Consensus 155 aGad~~VvGsaI~~~---~dp~~~~~~l~~~ 182 (190)
-+..=+-+|-+|+.. --..++++++++.
T Consensus 203 p~i~ElnIGHsiia~Al~~Gl~~AV~~m~~~ 233 (234)
T cd00003 203 PGIAELNIGHAIISRALFVGLEEAVREMKDL 233 (234)
T ss_pred CCCeEEccCHHHHHHHHHHhHHHHHHHHHHh
Confidence 346667788777653 2456677777654
No 250
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.002 Score=51.20 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=91.9
Q ss_pred CHHHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 12 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 12 G~~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
..+.|+.+++. ++..+-+=. |-||.. ++++.++|++.+.-+... .++++.++++|+-+.--+. ||-|.+
T Consensus 51 a~e~I~~l~~~~p~~lIGAGT-VL~~~q-~~~a~~aGa~fiVsP~~~------~ev~~~a~~~~ip~~PG~~--TptEi~ 120 (211)
T COG0800 51 ALEAIRALAKEFPEALIGAGT-VLNPEQ-ARQAIAAGAQFIVSPGLN------PEVAKAANRYGIPYIPGVA--TPTEIM 120 (211)
T ss_pred HHHHHHHHHHhCcccEEcccc-ccCHHH-HHHHHHcCCCEEECCCCC------HHHHHHHHhCCCcccCCCC--CHHHHH
Confidence 45677788764 444444433 235654 567899999988876542 3578889988877544333 454444
Q ss_pred HHhhcccceEEEEeeecCC--CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC
Q 029661 91 ECVLDVVDLVLIMSVNPGF--GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 91 ~~~~~~~d~i~~m~v~pG~--~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
.-+-...+.+=+ .|+- +| +.. ++.+.... .++++...|||++.|++++..+|+..+=+||.++.
T Consensus 121 ~Ale~G~~~lK~---FPa~~~Gg----~~~---~ka~~gP~----~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 121 AALELGASALKF---FPAEVVGG----PAM---LKALAGPF----PQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred HHHHcChhheee---cCccccCc----HHH---HHHHcCCC----CCCeEeecCCCCHHHHHHHHhCCceEEecCccccC
Confidence 333223444433 3432 22 112 22223222 34789999999999999999999776666899985
Q ss_pred C-----CCHHHHHHHHHHhhc
Q 029661 169 A-----KDYAEAIKGIKTSKR 184 (190)
Q Consensus 169 ~-----~dp~~~~~~l~~~~~ 184 (190)
. +|+.+..+..++.++
T Consensus 187 ~~~~~~~~~~~i~~~a~~~~~ 207 (211)
T COG0800 187 KDLIAAGDWDRITELAREAVA 207 (211)
T ss_pred hhhhhcccHHHHHHHHHHHHH
Confidence 3 566666555555443
No 251
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.35 E-value=0.0018 Score=55.64 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=78.4
Q ss_pred HHHHcCCCEEEEcccCC--------------------Ccc----hHHHHHHHHHHh-C------CcEEEEEcCCCC----
Q 029661 42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-G------AKAGVVLNPATS---- 86 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~~----~~~~~i~~i~~~-g------~~~g~~i~p~t~---- 86 (190)
.+.++|+|+|-+|.-.+ +.+ -+.++++.+|+. | ..+++=+++...
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g 231 (353)
T cd04735 152 RAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPG 231 (353)
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCC
Confidence 45778999999996210 001 145788888874 3 456777776431
Q ss_pred --HHHHH---Hhhc--ccceEEEEeeecCC-CCcc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHc
Q 029661 87 --LSAIE---CVLD--VVDLVLIMSVNPGF-GGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 155 (190)
Q Consensus 87 --~~~~~---~~~~--~~d~i~~m~v~pG~-~gq~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~a 155 (190)
.+... +.++ .+|+|-+- .|. .... ..+.....++.+++... .+.++.+-|||+ ++.+.++++.
T Consensus 232 ~~~ee~~~i~~~L~~~GvD~I~Vs---~g~~~~~~~~~~~~~~~~~~~ik~~~~---~~iPVi~~Ggi~t~e~ae~~l~~ 305 (353)
T cd04735 232 IRMEDTLALVDKLADKGLDYLHIS---LWDFDRKSRRGRDDNQTIMELVKERIA---GRLPLIAVGSINTPDDALEALET 305 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEec---cCccccccccCCcchHHHHHHHHHHhC---CCCCEEEECCCCCHHHHHHHHHc
Confidence 23222 2232 27888653 221 1111 11112333444555432 246788999995 8999999999
Q ss_pred CCCEEEEcccccCCCCHHHHH
Q 029661 156 GANALVAGSAVFGAKDYAEAI 176 (190)
Q Consensus 156 Gad~~VvGsaI~~~~dp~~~~ 176 (190)
|+|.+.+||++...+|.-..+
T Consensus 306 gaD~V~~gR~liadPdl~~k~ 326 (353)
T cd04735 306 GADLVAIGRGLLVDPDWVEKI 326 (353)
T ss_pred CCChHHHhHHHHhCccHHHHH
Confidence 999999999998877765433
No 252
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.34 E-value=0.0012 Score=57.33 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc-C-----CCCHHHHHHHHHHhh
Q 029661 118 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF-G-----AKDYAEAIKGIKTSK 183 (190)
Q Consensus 118 ~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~-~-----~~dp~~~~~~l~~~~ 183 (190)
+++-|.++++...+ +++|.+||||+ ..++.+....|||.+-+|+.+. . .+-....++.+++.+
T Consensus 294 t~~~L~ei~~~~~~---~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El 363 (383)
T cd03332 294 ALDALPEIVEAVGD---RLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAEL 363 (383)
T ss_pred HHHHHHHHHHHhcC---CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45566666665542 47899999999 5788888999999999999755 2 123344555555544
No 253
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.34 E-value=0.00094 Score=54.17 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=52.7
Q ss_pred CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661 85 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 162 (190)
Q Consensus 85 t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv 162 (190)
.|.+.++.+.+. +|.+.+..+.....++ +..++.++++++.. +.++.++|||+ .+.+..+.+.|+|.+++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~-----~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEEV-----FIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 444544444333 6766665555322222 22355566666543 36899999999 69999999999999999
Q ss_pred cccccCCC
Q 029661 163 GSAVFGAK 170 (190)
Q Consensus 163 GsaI~~~~ 170 (190)
||++++.+
T Consensus 100 g~~~~~~p 107 (243)
T cd04731 100 NSAAVENP 107 (243)
T ss_pred CchhhhCh
Confidence 99999854
No 254
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.33 E-value=0.00079 Score=54.21 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=53.8
Q ss_pred CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661 84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 161 (190)
Q Consensus 84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V 161 (190)
.+|.+.++.+-+. ++.+++.-+.-...++... ++-++++++.. +.++.++||++ .+.+..+.+.|+|.++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n---~~~~~~i~~~~-----~~pv~~~ggi~~~~d~~~~~~~G~~~vi 101 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREPL---FELISNLAEEC-----FMPLTVGGGIRSLEDAKKLLSLGADKVS 101 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCC---HHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 3566666666443 6777776665322232222 33344444433 36799999999 6899999999999999
Q ss_pred EcccccCCC
Q 029661 162 AGSAVFGAK 170 (190)
Q Consensus 162 vGsaI~~~~ 170 (190)
+||++++.+
T Consensus 102 lg~~~l~~~ 110 (232)
T TIGR03572 102 INTAALENP 110 (232)
T ss_pred EChhHhcCH
Confidence 999998754
No 255
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.32 E-value=0.0012 Score=53.89 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCC
Q 029661 119 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD 171 (190)
Q Consensus 119 ~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~d 171 (190)
.+-|+++.+.+ ..+++++|||+ .+.+..+.++|||-+|+||..++.++
T Consensus 63 ~~~i~~i~~~~-----~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~ 111 (243)
T TIGR01919 63 EMMLEEVVKLL-----VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPW 111 (243)
T ss_pred HHHHHHHHHHC-----CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHH
Confidence 33455555443 36899999999 79999999999999999999887543
No 256
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.31 E-value=0.008 Score=51.24 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=77.8
Q ss_pred HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-C--CcEEEEEcCC------CCHH
Q 029661 42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-G--AKAGVVLNPA------TSLS 88 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g--~~~g~~i~p~------t~~~ 88 (190)
.+.++|.|+|-+|.-.+ +. .-+.++++++|+. | +.+++-+++. .+.+
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~e 236 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEE 236 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHH
Confidence 46788999999985420 10 1145788888874 3 6688888742 2333
Q ss_pred HHHHh---hcc--cceEEEEeeecCCCCcccc-----------h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHH
Q 029661 89 AIECV---LDV--VDLVLIMSVNPGFGGQSFI-----------E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 150 (190)
Q Consensus 89 ~~~~~---~~~--~d~i~~m~v~pG~~gq~~~-----------~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~ 150 (190)
...++ ++. +|+|-+ +.|...+... + ..++..+++|+.. ++++.++|+|+ ++.+.
T Consensus 237 ea~~ia~~Le~~Gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~~G~i~t~~~a~ 308 (338)
T cd04733 237 DALEVVEALEEAGVDLVEL---SGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-----KTPLMVTGGFRTRAAME 308 (338)
T ss_pred HHHHHHHHHHHcCCCEEEe---cCCCCCCccccccccCCccccchhhHHHHHHHHHHc-----CCCEEEeCCCCCHHHHH
Confidence 32222 222 677754 3332222110 0 1134445555543 47899999996 88999
Q ss_pred HHHHcC-CCEEEEcccccCCCCHHH
Q 029661 151 KVIEAG-ANALVAGSAVFGAKDYAE 174 (190)
Q Consensus 151 ~~~~aG-ad~~VvGsaI~~~~dp~~ 174 (190)
++++.| +|.+-+|+++...++.-.
T Consensus 309 ~~l~~g~aD~V~lgR~~iadP~~~~ 333 (338)
T cd04733 309 QALASGAVDGIGLARPLALEPDLPN 333 (338)
T ss_pred HHHHcCCCCeeeeChHhhhCccHHH
Confidence 999887 999999999988776543
No 257
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.31 E-value=0.011 Score=51.79 Aligned_cols=148 Identities=21% Similarity=0.298 Sum_probs=85.6
Q ss_pred HHHHhccC-C-CCcEEEEEeec--Ch---HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE----------
Q 029661 15 VVDALRPV-T-DLPLDVHLMIV--EP---EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA---------- 77 (190)
Q Consensus 15 ~v~~i~~~-~-~~~i~~hlmv~--dp---~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~---------- 77 (190)
.|+++|+. + +.|+-+.|+.. +| ..+++.+.+.|+..|....... . ++ .+...|..|++.
T Consensus 56 ~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~-~-~p--~~~~~r~~G~~~~~~g~~~~~~ 131 (418)
T cd04742 56 AIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQ-L-TP--ALVRYRAKGLRRDADGRVQIAN 131 (418)
T ss_pred HHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccC-C-Cc--chhhHHhcCCcccccccccccc
Confidence 34556663 6 88999999873 33 3468889999999988875321 1 12 223566766651
Q ss_pred --EEEEc-CC--------CCHHHHHHhhc----------------ccceEEEEeeecCC-CCcccchhhHHHHHHHHHHH
Q 029661 78 --GVVLN-PA--------TSLSAIECVLD----------------VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMC 129 (190)
Q Consensus 78 --g~~i~-p~--------t~~~~~~~~~~----------------~~d~i~~m~v~pG~-~gq~~~~~~~~ki~~~~~~~ 129 (190)
.-.++ |. -|-+.++++.+ .+|.|.+- .+.|. .|+.-....+..+.++++..
T Consensus 132 ~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v 210 (418)
T cd04742 132 RIIAKVSRPEVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDEL 210 (418)
T ss_pred eEEEecCChhhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHH
Confidence 11111 10 01112222221 15888765 45432 12211122344455554433
Q ss_pred hh-cC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661 130 LE-KG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 130 ~~-~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~ 167 (190)
.. .+ .+++|.+.|||. ++.+..+...|||.+.+||...
T Consensus 211 ~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fl 252 (418)
T cd04742 211 AARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQ 252 (418)
T ss_pred hhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHH
Confidence 21 11 247899999997 7899999999999999999754
No 258
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.30 E-value=0.013 Score=53.08 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=96.1
Q ss_pred HHHHHHhccCCCCcEEEEEeec---Ch-------HHHHHHHHHcCCCEEEEcccCCCcch------------HHHHHHHH
Q 029661 13 PLVVDALRPVTDLPLDVHLMIV---EP-------EQRVPDFIKAGADIVSVHCEQSSTIH------------LHRTLNQI 70 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~---dp-------~~~i~~~~~~Gad~v~vh~e~~~~~~------------~~~~i~~i 70 (190)
.++|+++.+...+|+-+===+. || .+-++.++++|||-|++--.+ ..+ ++-+-+.+
T Consensus 303 ~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~A--v~~~~~~~~~~~~~~p~~i~~~~ 380 (538)
T PLN02617 303 LEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDA--VYAAEEYIASGVKTGKTSIEQIS 380 (538)
T ss_pred HHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHH--HhChhhhhccccccCHHHHHHHH
Confidence 4678888776666665521122 22 245788999999999997543 222 45556666
Q ss_pred HHhCCc-EEEEEcCC-------------------------------------------CCHHHHHHhhcc-cceEEEEee
Q 029661 71 KDLGAK-AGVVLNPA-------------------------------------------TSLSAIECVLDV-VDLVLIMSV 105 (190)
Q Consensus 71 ~~~g~~-~g~~i~p~-------------------------------------------t~~~~~~~~~~~-~d~i~~m~v 105 (190)
+++|-+ +.+++.+. .++++++++.+. +.-|++-++
T Consensus 381 ~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~i 460 (538)
T PLN02617 381 RVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCI 460 (538)
T ss_pred HHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeec
Confidence 778877 55666532 123555555444 677777666
Q ss_pred ecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH-cCCCEEEEcccc-cCCCCHHHHHHHHH
Q 029661 106 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-AGANALVAGSAV-FGAKDYAEAIKGIK 180 (190)
Q Consensus 106 ~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~-aGad~~VvGsaI-~~~~dp~~~~~~l~ 180 (190)
.--...+-+. ++.++++++.. ++++.+.||++ ++++.++.+ .|||...++|.+ |..-++.+.-+.|+
T Consensus 461 d~DGt~~G~d---~~l~~~v~~~~-----~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 461 DCDGQGKGFD---IELVKLVSDAV-----TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred cccccccCcC---HHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 5422233333 34444444442 47888999998 799988876 679998877754 33344444444444
No 259
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.30 E-value=0.0025 Score=54.79 Aligned_cols=115 Identities=24% Similarity=0.394 Sum_probs=74.7
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEE--cccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHH
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV--HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 88 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~v--h~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~ 88 (190)
+..+.+++||+.++.|+.+.- +.+| +..+.+.++|+|+|++ |.- . .+
T Consensus 208 ~~~~~l~~lr~~~~~PvivKg-v~~~-~dA~~a~~~G~d~I~vsnhGG---r-~l------------------------- 256 (351)
T cd04737 208 LSPADIEFIAKISGLPVIVKG-IQSP-EDADVAINAGADGIWVSNHGG---R-QL------------------------- 256 (351)
T ss_pred CCHHHHHHHHHHhCCcEEEec-CCCH-HHHHHHHHcCCCEEEEeCCCC---c-cC-------------------------
Confidence 466888999988888888842 3344 3567788899999988 431 0 00
Q ss_pred HHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661 89 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 89 ~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~ 167 (190)
| ++ +..++.+.++++... .+++|.+||||+ ..++.+++..|||.+-+|++++
T Consensus 257 ---------d-----------~~----~~~~~~l~~i~~a~~---~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l 309 (351)
T cd04737 257 ---------D-----------GG----PASFDSLPEIAEAVN---HRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVL 309 (351)
T ss_pred ---------C-----------CC----chHHHHHHHHHHHhC---CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 0 01 122334444544432 247899999999 5788888899999999999865
Q ss_pred CC------CCHHHHHHHHHHhh
Q 029661 168 GA------KDYAEAIKGIKTSK 183 (190)
Q Consensus 168 ~~------~dp~~~~~~l~~~~ 183 (190)
.+ +.....++.+++.+
T Consensus 310 ~~la~~G~~gv~~~l~~l~~El 331 (351)
T cd04737 310 YGLALGGAQGVASVLEHLNKEL 331 (351)
T ss_pred HHHhhchHHHHHHHHHHHHHHH
Confidence 32 23344555555544
No 260
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.29 E-value=0.013 Score=49.93 Aligned_cols=126 Identities=16% Similarity=0.255 Sum_probs=79.1
Q ss_pred HHHHHHH--cCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCC--CCc
Q 029661 39 RVPDFIK--AGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQ 112 (190)
Q Consensus 39 ~i~~~~~--~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~--~gq 112 (190)
.++.+.+ +|+|.+++-.-.+..+..-+.++.+|+.-- ...++=|..|+- -.+.++. .+|.|-+ ++=||. .-+
T Consensus 112 r~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e-~a~~Li~aGAD~vKV-GIGpGSiCtTr 189 (346)
T PRK05096 112 KTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGE-MVEELILSGADIVKV-GIGPGSVCTTR 189 (346)
T ss_pred HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHH-HHHHHHHcCCCEEEE-cccCCccccCc
Confidence 4667777 599999984433223456678888888532 334455555664 4455544 4887643 444442 111
Q ss_pred c---c-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 113 S---F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 113 ~---~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
. + .| .+.-+.+..+...+ ++.+|..||||+ ..++.+.+.+|||.+-+||.+-..
T Consensus 190 ~vtGvG~P-QltAV~~~a~~a~~--~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt 248 (346)
T PRK05096 190 VKTGVGYP-QLSAVIECADAAHG--LGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGH 248 (346)
T ss_pred cccccChh-HHHHHHHHHHHHHH--cCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCc
Confidence 0 1 12 23334444444333 456899999999 789999999999999999988654
No 261
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.28 E-value=0.0055 Score=52.87 Aligned_cols=122 Identities=19% Similarity=0.324 Sum_probs=72.3
Q ss_pred HHcCCCEEEEc--ccCCCcchHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhh--cccceEEEEeeecCCCCccc--c
Q 029661 44 IKAGADIVSVH--CEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVL--DVVDLVLIMSVNPGFGGQSF--I 115 (190)
Q Consensus 44 ~~~Gad~v~vh--~e~~~~~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~--~~~d~i~~m~v~pG~~gq~~--~ 115 (190)
...|.|.++-. .+..+.+++.+.++.+|+.+ +.+++=+......+.+.... ..+|+|.+=+-+-|++..+. .
T Consensus 169 ~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~ 248 (368)
T PF01645_consen 169 VPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSM 248 (368)
T ss_dssp S-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHH
T ss_pred CCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHH
Confidence 44577777753 22224567888889999864 88888777777877666533 24899988666655443221 1
Q ss_pred h----hhHHHHHHHHHHHhhcC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccc
Q 029661 116 E----SQVKKISDLRRMCLEKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 165 (190)
Q Consensus 116 ~----~~~~ki~~~~~~~~~~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsa 165 (190)
. -+..-+.++.+.+.+++ ..+.+.++||+. +.++...+..|||.+-+|++
T Consensus 249 d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~ 305 (368)
T PF01645_consen 249 DHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTA 305 (368)
T ss_dssp HHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHH
T ss_pred hhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecch
Confidence 1 11233666777766554 357899999999 68999999999999999986
No 262
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.25 E-value=0.0016 Score=52.73 Aligned_cols=88 Identities=17% Similarity=0.304 Sum_probs=58.4
Q ss_pred CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
...|++..+.|.+. +|.+.+.-... ..|.. ..++-|+++.+.. ..+++++|||+ .|++..+..+||+-+
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~-~~~~~---~n~~~i~~i~~~~-----~~~v~vgGGir~~edv~~~l~~Ga~~v 104 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDA-IMGRG---DNDEAIRELAAAW-----PLGLWVDGGIRSLENAQEWLKRGASRV 104 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCcc-ccCCC---ccHHHHHHHHHhC-----CCCEEEecCcCCHHHHHHHHHcCCCeE
Confidence 34677777777654 78777765552 22322 2344455554432 36899999999 599999999999999
Q ss_pred EEcccccCCCCHHHHHHHH
Q 029661 161 VAGSAVFGAKDYAEAIKGI 179 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l 179 (190)
|+||.-++.+-..+.++++
T Consensus 105 iigt~~~~~~~~~~~~~~~ 123 (233)
T cd04723 105 IVGTETLPSDDDEDRLAAL 123 (233)
T ss_pred EEcceeccchHHHHHHHhc
Confidence 9999888752223444444
No 263
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.25 E-value=0.0074 Score=55.20 Aligned_cols=144 Identities=20% Similarity=0.236 Sum_probs=93.5
Q ss_pred HHHHHHhcc-CCCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 13 PLVVDALRP-VTDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 13 ~~~v~~i~~-~~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
.+.++.+++ .++.++-+.+-..| | ..+++.+.++|+|.+.+.......+++...++.+|++|+.+...
T Consensus 58 ~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 58 WERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred HHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
Confidence 356788877 46777776554333 2 34688899999999887644322467888999999999998766
Q ss_pred Ec----CCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHH
Q 029661 81 LN----PATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK 151 (190)
Q Consensus 81 i~----p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~ 151 (190)
++ |-++.+.+.+++. .+|.|.+ ....|-..+..+.+.++.+|+..+ ...++..-=+.|...-|.-.
T Consensus 138 i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i----~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~la 212 (582)
T TIGR01108 138 ISYTTSPVHTLETYLDLAEELLEMGVDSICI----KDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLK 212 (582)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHH
Confidence 44 3344554444432 2676644 344555556667777888877653 11112223567777778888
Q ss_pred HHHcCCCEEE
Q 029661 152 VIEAGANALV 161 (190)
Q Consensus 152 ~~~aGad~~V 161 (190)
.+++|||.+=
T Consensus 213 AveaGa~~vd 222 (582)
T TIGR01108 213 AIEAGADGID 222 (582)
T ss_pred HHHhCCCEEE
Confidence 8999999763
No 264
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=97.24 E-value=0.0054 Score=52.40 Aligned_cols=127 Identities=16% Similarity=0.214 Sum_probs=79.1
Q ss_pred HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-CCcEEEEEcCCC------CHHHH
Q 029661 42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-GAKAGVVLNPAT------SLSAI 90 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g~~~g~~i~p~t------~~~~~ 90 (190)
.+.++|+|+|-+|.-.+ +. .-+.++++.+|+. +..+++=+++.. +.+..
T Consensus 150 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~ 229 (337)
T PRK13523 150 RAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDY 229 (337)
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHH
Confidence 45778999999996520 11 1145788888885 566777777631 33333
Q ss_pred HHh---hc--ccceEEEEeeecCCC----CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-CCE
Q 029661 91 ECV---LD--VVDLVLIMSVNPGFG----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANA 159 (190)
Q Consensus 91 ~~~---~~--~~d~i~~m~v~pG~~----gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-ad~ 159 (190)
.++ ++ .+|+|-+ ..|.. .+.+....++-.+++|+.. +.++.+.|+|+ ++.+.++++.| +|.
T Consensus 230 ~~i~~~l~~~gvD~i~v---s~g~~~~~~~~~~~~~~~~~~~~ik~~~-----~ipVi~~G~i~~~~~a~~~l~~g~~D~ 301 (337)
T PRK13523 230 VQYAKWMKEQGVDLIDV---SSGAVVPARIDVYPGYQVPFAEHIREHA-----NIATGAVGLITSGAQAEEILQNNRADL 301 (337)
T ss_pred HHHHHHHHHcCCCEEEe---CCCCCCCCCCCCCccccHHHHHHHHhhc-----CCcEEEeCCCCCHHHHHHHHHcCCCCh
Confidence 332 32 2688865 33321 1111111233445555543 46888999996 89999999987 999
Q ss_pred EEEcccccCCCCHHHHH
Q 029661 160 LVAGSAVFGAKDYAEAI 176 (190)
Q Consensus 160 ~VvGsaI~~~~dp~~~~ 176 (190)
+-+||++...++.-..+
T Consensus 302 V~~gR~~iadP~~~~k~ 318 (337)
T PRK13523 302 IFIGRELLRNPYFPRIA 318 (337)
T ss_pred HHhhHHHHhCccHHHHH
Confidence 99999998877664333
No 265
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.22 E-value=0.0013 Score=54.14 Aligned_cols=79 Identities=16% Similarity=0.307 Sum_probs=55.0
Q ss_pred CCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEE
Q 029661 84 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 161 (190)
Q Consensus 84 ~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~V 161 (190)
..|++.++.|.+. ++.+++.-+.....++. .-++-++++.+.. ..++.++|||+ .+.+.++.++|++.++
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~---~n~~~i~~i~~~~-----~~pv~~gGGi~s~~d~~~l~~~G~~~vv 101 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGSE---PNYELIENLASEC-----FMPLCYGGGIKTLEQAKKIFSLGVEKVS 101 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCCc---ccHHHHHHHHHhC-----CCCEEECCCCCCHHHHHHHHHCCCCEEE
Confidence 3567777776654 78887766653222322 2244455555432 36899999997 7999999999999999
Q ss_pred EcccccCCC
Q 029661 162 AGSAVFGAK 170 (190)
Q Consensus 162 vGsaI~~~~ 170 (190)
+||+++..+
T Consensus 102 igs~~~~~~ 110 (258)
T PRK01033 102 INTAALEDP 110 (258)
T ss_pred EChHHhcCH
Confidence 999988754
No 266
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=97.21 E-value=0.0073 Score=51.54 Aligned_cols=146 Identities=15% Similarity=0.147 Sum_probs=86.9
Q ss_pred CCCcEEEEEeecC------h-H----HHHHHHHHcCCCEEEEcccCCC------cchHHHHHHHHHHhCCcEEEEEcCCC
Q 029661 23 TDLPLDVHLMIVE------P-E----QRVPDFIKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPAT 85 (190)
Q Consensus 23 ~~~~i~~hlmv~d------p-~----~~i~~~~~~Gad~v~vh~e~~~------~~~~~~~i~~i~~~g~~~g~~i~p~t 85 (190)
.++++.+||=-.. + . .-++.+...|||.|.+|.--++ .+++.++.++++++|+-+.+...|.-
T Consensus 124 ~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG 203 (348)
T PRK09250 124 HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRN 203 (348)
T ss_pred CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccC
Confidence 3578888764421 1 1 1378899999999999865432 23467778889999999887655433
Q ss_pred C-----------HHHHHHhhc-----ccceEEEEeeecCCCCcccc-----------------hhhHHHHHHHHHHHhhc
Q 029661 86 S-----------LSAIECVLD-----VVDLVLIMSVNPGFGGQSFI-----------------ESQVKKISDLRRMCLEK 132 (190)
Q Consensus 86 ~-----------~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~-----------------~~~~~ki~~~~~~~~~~ 132 (190)
+ .+.+..... .+|.|=+ -.||.. ..|. ....++++.+-.-+- .
T Consensus 204 ~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv--~yp~~~-~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~-a 279 (348)
T PRK09250 204 SAFKKDGDYHTAADLTGQANHLAATIGADIIKQ--KLPTNN-GGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCY-M 279 (348)
T ss_pred cccCCcccccccHHHHHHHHHHHHHHcCCEEEe--cCCCCh-hhHHHhhcccccccccccccccchHHHHHHHHHhhc-c
Confidence 2 222222111 1577642 224311 1111 112233333332210 0
Q ss_pred CCCCeEEEeCCCCc------ccHHHH---HHcCCCEEEEcccccCCCCHH
Q 029661 133 GVNPWIEVDGGVGP------KNAYKV---IEAGANALVAGSAVFGAKDYA 173 (190)
Q Consensus 133 ~~~~~i~vdGGI~~------e~~~~~---~~aGad~~VvGsaI~~~~dp~ 173 (190)
-..++.+.||=+. +.+..+ +++||.++++||.||+.++++
T Consensus 280 -g~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~e 328 (348)
T PRK09250 280 -GRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAE 328 (348)
T ss_pred -CCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHH
Confidence 0357888999873 245567 788999999999999998875
No 267
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.19 E-value=0.011 Score=48.64 Aligned_cols=140 Identities=18% Similarity=0.215 Sum_probs=86.4
Q ss_pred CHHHHHHhccC-CCCcEEEEEe--ecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE--cCCCC
Q 029661 12 GPLVVDALRPV-TDLPLDVHLM--IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATS 86 (190)
Q Consensus 12 G~~~v~~i~~~-~~~~i~~hlm--v~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i--~p~t~ 86 (190)
..+.++.+++. .+..+.+-+- ..+ .+.++.+.++|+|.+.+-..........+.++.+|+.|.++.+.+ ...++
T Consensus 61 ~~e~i~~~~~~~~~~~~~~~~~~~~~~-~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~ 139 (263)
T cd07943 61 DEEYLEAAAEALKQAKLGVLLLPGIGT-VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMAS 139 (263)
T ss_pred hHHHHHHHHHhccCCEEEEEecCCccC-HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCC
Confidence 44677888653 4555544210 223 345788999999998764332113457789999999999987766 33344
Q ss_pred HHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC----CCCcccHHHHHHcCC
Q 029661 87 LSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG----GVGPKNAYKVIEAGA 157 (190)
Q Consensus 87 ~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG----GI~~e~~~~~~~aGa 157 (190)
.+.+.++.+. +|.|.+ +-+.|...+..+.+.++.+|+..+. .++.+=+ |....|.-..+++||
T Consensus 140 ~~~~~~~~~~~~~~G~d~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~----~~l~~H~Hn~~GlA~AN~laAi~aGa 211 (263)
T cd07943 140 PEELAEQAKLMESYGADCVYV----TDSAGAMLPDDVRERVRALREALDP----TPVGFHGHNNLGLAVANSLAAVEAGA 211 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEE----cCCCCCcCHHHHHHHHHHHHHhCCC----ceEEEEecCCcchHHHHHHHHHHhCC
Confidence 5555444432 676654 4455655566666667777765431 2455443 444457778889999
Q ss_pred CEE
Q 029661 158 NAL 160 (190)
Q Consensus 158 d~~ 160 (190)
+.+
T Consensus 212 ~~v 214 (263)
T cd07943 212 TRI 214 (263)
T ss_pred CEE
Confidence 965
No 268
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0017 Score=52.29 Aligned_cols=94 Identities=15% Similarity=0.213 Sum_probs=66.2
Q ss_pred CCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 83 PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 83 p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
...|++..+.|-+ .+|-+.++-+.....|+. .+++-+++..+.+ .+|+.|.|||+ .++++++..+|||-+
T Consensus 29 ~GDpVelA~~Y~e~GADElvFlDItAs~~gr~---~~~~vv~r~A~~v-----fiPltVGGGI~s~eD~~~ll~aGADKV 100 (256)
T COG0107 29 AGDPVELAKRYNEEGADELVFLDITASSEGRE---TMLDVVERVAEQV-----FIPLTVGGGIRSVEDARKLLRAGADKV 100 (256)
T ss_pred cCChHHHHHHHHHcCCCeEEEEecccccccch---hHHHHHHHHHhhc-----eeeeEecCCcCCHHHHHHHHHcCCCee
Confidence 3578888887765 489999888876666644 3455555554443 37899999999 799999999999999
Q ss_pred EEcccccCCCCHHHHHHHHHHhhcccc
Q 029661 161 VAGSAVFGAKDYAEAIKGIKTSKRPQA 187 (190)
Q Consensus 161 VvGsaI~~~~dp~~~~~~l~~~~~~~~ 187 (190)
-+.|+-...++ .++++-+....|.
T Consensus 101 SINsaAv~~p~---lI~~~a~~FGsQc 124 (256)
T COG0107 101 SINSAAVKDPE---LITEAADRFGSQC 124 (256)
T ss_pred eeChhHhcChH---HHHHHHHHhCCce
Confidence 99987555332 4444444444443
No 269
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.17 E-value=0.015 Score=47.02 Aligned_cols=141 Identities=15% Similarity=0.275 Sum_probs=90.4
Q ss_pred HHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC--------cchHHHHHHHHHHhCCcEEE--EEcCCC-
Q 029661 17 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS--------TIHLHRTLNQIKDLGAKAGV--VLNPAT- 85 (190)
Q Consensus 17 ~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~--------~~~~~~~i~~i~~~g~~~g~--~i~p~t- 85 (190)
+++++--.+|+-+-+.=+|+..-+..+...||+.|-+-.-++. .....++++.-+..+.++-+ .+.+.+
T Consensus 78 ~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa 157 (263)
T COG0434 78 REVVREVSIPVGVNVLRNDAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHA 157 (263)
T ss_pred HHHHHhccccceeeeeccccHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcc
Confidence 3444445789999888889887777888899999886432210 12355666666665544433 343321
Q ss_pred ------CHHH-HHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC
Q 029661 86 ------SLSA-IECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG 156 (190)
Q Consensus 86 ------~~~~-~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG 156 (190)
+++. .+..++ .+|-|++-+... |.. ..++.|+.+++.. +.++-|.-|++++|+.++.+.
T Consensus 158 ~~l~~~~~~~~v~dtver~~aDaVI~tG~~T---G~~---~d~~el~~a~~~~-----~~pvlvGSGv~~eN~~~~l~~- 225 (263)
T COG0434 158 VHLGNRSLEEAVKDTVERGLADAVIVTGSRT---GSP---PDLEELKLAKEAV-----DTPVLVGSGVNPENIEELLKI- 225 (263)
T ss_pred cccCCcCHHHHHHHHHHccCCCEEEEecccC---CCC---CCHHHHHHHHhcc-----CCCEEEecCCCHHHHHHHHHH-
Confidence 3322 222222 378887643332 322 2355566665554 368889999999999999998
Q ss_pred CCEEEEcccccCC
Q 029661 157 ANALVAGSAVFGA 169 (190)
Q Consensus 157 ad~~VvGsaI~~~ 169 (190)
||++|+||++=+.
T Consensus 226 adG~IvgT~lK~~ 238 (263)
T COG0434 226 ADGVIVGTSLKKG 238 (263)
T ss_pred cCceEEEEEEccC
Confidence 9999999998754
No 270
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=97.13 E-value=0.0077 Score=52.52 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhc-c-cceEEEEeeecCCCCcc------cchhhHHHHHHHHHHHh
Q 029661 61 IHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-V-VDLVLIMSVNPGFGGQS------FIESQVKKISDLRRMCL 130 (190)
Q Consensus 61 ~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~-~-~d~i~~m~v~pG~~gq~------~~~~~~~ki~~~~~~~~ 130 (190)
+++.+.++.+|+.. +.+++=+......+.+...++ . +|.|.+-+...|++..+ +...+..-+.++++...
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~ 278 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV 278 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence 45678899999975 466665655534444555443 3 89998765554432111 12224455666666554
Q ss_pred hcC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661 131 EKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 131 ~~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~ 167 (190)
+.+ .+++|.++|||+ ...+.++...|||.+-+|++..
T Consensus 279 ~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l 318 (392)
T cd02808 279 KNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAAL 318 (392)
T ss_pred HcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence 332 357899999998 6889899999999999998755
No 271
>PLN02623 pyruvate kinase
Probab=97.13 E-value=0.013 Score=53.24 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=94.5
Q ss_pred HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCCCcccc-
Q 029661 39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFGGQSFI- 115 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~gq~~~- 115 (190)
.++...+.|+|+|.+-.-- +.+++.++-+++++.|..+.+...-+|+ ++.+.+++..+|.|++- ||-=+....
T Consensus 283 di~f~~~~~vD~ialSFVr-~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIg---rgDLgvelg~ 358 (581)
T PLN02623 283 DIKFGVENKVDFYAVSFVK-DAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVA---RGDLGAELPI 358 (581)
T ss_pred HHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEEC---cchhhhhcCc
Confidence 4566789999999886553 3456777777787777776665544444 68899999999998862 221122222
Q ss_pred hhhHHHHHHHHHHHhhcCCCCeEEEeC--------CCCc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661 116 ESQVKKISDLRRMCLEKGVNPWIEVDG--------GVGP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182 (190)
Q Consensus 116 ~~~~~ki~~~~~~~~~~~~~~~i~vdG--------GI~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~ 182 (190)
++.....+++.+.+.+.+. ++.+.. .-++ ..+..++..|+|.+.+|+-..-...|.++++.+++.
T Consensus 359 ~~v~~~qk~Ii~~~~~~gK--pvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I 436 (581)
T PLN02623 359 EEVPLLQEEIIRRCRSMGK--PVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 436 (581)
T ss_pred HHHHHHHHHHHHHHHHhCC--CEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHH
Confidence 4555555666665555443 333322 1234 378889999999999998877778999999998876
Q ss_pred hc
Q 029661 183 KR 184 (190)
Q Consensus 183 ~~ 184 (190)
+.
T Consensus 437 ~~ 438 (581)
T PLN02623 437 AL 438 (581)
T ss_pred HH
Confidence 53
No 272
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=97.13 E-value=0.0064 Score=54.51 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=93.4
Q ss_pred HHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE-
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV- 80 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~- 80 (190)
+.++.+|+. ++.++-..+-=.| | ..+++.+.++|.|.+.+-......+++...++.+++.|..+-..
T Consensus 65 erlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i 144 (499)
T PRK12330 65 ERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTI 144 (499)
T ss_pred HHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEE
Confidence 457888875 7777776552111 2 45788899999999777533223467888999999999987333
Q ss_pred ---EcCCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCccc
Q 029661 81 ---LNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKN 148 (190)
Q Consensus 81 ---i~p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~ 148 (190)
++|..+.+.+.+++.. +|.|.+ +...|-..+..+.+.++.+|+..+ .+.+|.+ +-|....|
T Consensus 145 ~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I----kDtaGll~P~~~~~LV~~Lk~~~~---~~ipI~~H~Hnt~GlA~An 217 (499)
T PRK12330 145 CYTVSPIHTVEGFVEQAKRLLDMGADSICI----KDMAALLKPQPAYDIVKGIKEACG---EDTRINLHCHSTTGVTLVS 217 (499)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCCEEEe----CCCccCCCHHHHHHHHHHHHHhCC---CCCeEEEEeCCCCCcHHHH
Confidence 3677777665554432 566644 344565556667777888877653 1345654 45666667
Q ss_pred HHHHHHcCCCEEE
Q 029661 149 AYKVIEAGANALV 161 (190)
Q Consensus 149 ~~~~~~aGad~~V 161 (190)
.-..+++|||.+=
T Consensus 218 ~laAieAGad~vD 230 (499)
T PRK12330 218 LMKAIEAGVDVVD 230 (499)
T ss_pred HHHHHHcCCCEEE
Confidence 7788999999763
No 273
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=97.13 E-value=0.0017 Score=55.91 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=68.2
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
+..+.+++|++..+.|+.+.=- .+++ -+..+.++|+++|.+-.--+ ..
T Consensus 212 ~~w~~i~~~~~~~~~pvivKgv-~~~~-da~~~~~~G~~~i~vs~hGG-r~----------------------------- 259 (356)
T PF01070_consen 212 LTWDDIEWIRKQWKLPVIVKGV-LSPE-DAKRAVDAGVDGIDVSNHGG-RQ----------------------------- 259 (356)
T ss_dssp -SHHHHHHHHHHCSSEEEEEEE--SHH-HHHHHHHTT-SEEEEESGTG-TS-----------------------------
T ss_pred CCHHHHHHHhcccCCceEEEec-ccHH-HHHHHHhcCCCEEEecCCCc-cc-----------------------------
Confidence 4447788888888888887432 4444 34678888888888854321 21
Q ss_pred HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHcCCCEEEEcccccC
Q 029661 91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~aGad~~VvGsaI~~ 168 (190)
..+.+.+++-|.++++..+ .+++|.+||||+. .++-+.+..|||.+-+|+.+..
T Consensus 260 ---------------------~d~~~~~~~~L~~i~~~~~---~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 260 ---------------------LDWGPPTIDALPEIRAAVG---DDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp ---------------------STTS-BHHHHHHHHHHHHT---TSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred ---------------------CccccccccccHHHHhhhc---CCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 2234557777788887654 3589999999994 6788889999999999998654
No 274
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=97.11 E-value=0.095 Score=43.46 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=90.9
Q ss_pred HHHHHhccC---CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc------------chHHHHHHHHHHhCCcEE
Q 029661 14 LVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST------------IHLHRTLNQIKDLGAKAG 78 (190)
Q Consensus 14 ~~v~~i~~~---~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~------------~~~~~~i~~i~~~g~~~g 78 (190)
+.++.+++. .++.+.++.-..+ .+.++.+.++|++.+.+-.|. +. +...+.++.+++.|++++
T Consensus 98 ~~~~~i~~~~~~~~i~~~~~~g~~~-~e~l~~Lk~aG~~~v~i~~E~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~ 175 (296)
T TIGR00433 98 EYVEAMVQIVEEMGLKTCATLGLLD-PEQAKRLKDAGLDYYNHNLDT-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVC 175 (296)
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCC-HHHHHHHHHcCCCEEEEcccC-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEE
Confidence 355555432 4555544432223 456788999999999998773 21 122356778888999986
Q ss_pred EE--EcCCCCHHHHHHhhc-----ccceEEEEe--eecCCCCcccc----hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC
Q 029661 79 VV--LNPATSLSAIECVLD-----VVDLVLIMS--VNPGFGGQSFI----ESQVKKISDLRRMCLEKGVNPWIEVDGGVG 145 (190)
Q Consensus 79 ~~--i~p~t~~~~~~~~~~-----~~d~i~~m~--v~pG~~gq~~~----~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~ 145 (190)
.. +.+....+.+.+.+. .++.+.+.. ..||+.=..+. .+.++.+...|.+++. -.|-+.+|=-
T Consensus 176 ~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~----~~i~~~~~~~ 251 (296)
T TIGR00433 176 SGGIFGLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPK----AEIRLAGGRE 251 (296)
T ss_pred EeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCc----ceEEEeCCcc
Confidence 43 333444443333332 256554433 34575322222 2445666666666653 2355566553
Q ss_pred ---cccHHH-HHHcCCCEEEEcccccCC-CCHH-HHHHHHH
Q 029661 146 ---PKNAYK-VIEAGANALVAGSAVFGA-KDYA-EAIKGIK 180 (190)
Q Consensus 146 ---~e~~~~-~~~aGad~~VvGsaI~~~-~dp~-~~~~~l~ 180 (190)
.+..+. +..+|||.+++|-+++.. ..+. +-++-++
T Consensus 252 ~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~~~~~~~~~~~ 292 (296)
T TIGR00433 252 VNMRELQQAMCFMAGANSIFVGDYLTTTGNPEEDKDKKLLA 292 (296)
T ss_pred hhhhhhHHHHHHHhcCceEEEcCcccCCCCCCcHHHHHHHH
Confidence 123333 689999999999998854 3333 3444443
No 275
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.08 E-value=0.011 Score=50.65 Aligned_cols=128 Identities=19% Similarity=0.271 Sum_probs=81.2
Q ss_pred CCCcEEEEEeecC-hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh----------CCcEEEEEcCCC-CHHHH
Q 029661 23 TDLPLDVHLMIVE-PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL----------GAKAGVVLNPAT-SLSAI 90 (190)
Q Consensus 23 ~~~~i~~hlmv~d-p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~----------g~~~g~~i~p~t-~~~~~ 90 (190)
.++|+...=|-.= -.+....+.+.|.=.| +|.+. +.++-.+.++..|++ ...++.++.+.. ..+++
T Consensus 36 l~iPivsa~MDtVte~~mAiama~~Gglgv-ih~~~-~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~ 113 (352)
T PF00478_consen 36 LKIPIVSAPMDTVTESEMAIAMARLGGLGV-IHRNM-SIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERA 113 (352)
T ss_dssp ESSSEEE-SSTTTSSHHHHHHHHHTTSEEE-EESSS-CHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHH
T ss_pred ecCceEecCccccchHHHHHHHHHhcCCce-ecCCC-CHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHH
Confidence 3567777655421 1235556677775444 67665 334444555555542 567888898875 46778
Q ss_pred HHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC-CcccHHHHHHcCCCEEEEc
Q 029661 91 ECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAG 163 (190)
Q Consensus 91 ~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-~~e~~~~~~~aGad~~VvG 163 (190)
+.+++ .+|++.+=+.+ | .....++.++++|+..+ +.+| +.|+| +.+....+.++|||.+-||
T Consensus 114 ~~L~~agvD~ivID~a~-g-----~s~~~~~~ik~ik~~~~----~~~v-iaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 114 EALVEAGVDVIVIDSAH-G-----HSEHVIDMIKKIKKKFP----DVPV-IAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHTT-SEEEEE-SS-T-----TSHHHHHHHHHHHHHST----TSEE-EEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHcCCCEEEccccC-c-----cHHHHHHHHHHHHHhCC----CceE-EecccCCHHHHHHHHHcCCCEEEEe
Confidence 88775 58998764333 2 23456777888887765 3666 45555 4899999999999999998
No 276
>PRK14566 triosephosphate isomerase; Provisional
Probab=97.07 E-value=0.019 Score=47.35 Aligned_cols=133 Identities=20% Similarity=0.294 Sum_probs=82.2
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HHHH----HHhhccc-----
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAI----ECVLDVV----- 97 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~~~----~~~~~~~----- 97 (190)
.+++.++|++++++ |.|- ...+.+..-++.+.++|+.+.+.+.-+.. .+.+ +..++..
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~ 167 (260)
T PRK14566 88 GQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAF 167 (260)
T ss_pred HHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhccchhhc
Confidence 67899999999999 4331 12345667888899999999988874321 1222 2222211
Q ss_pred ceEEEEeeec----CCCCcccchhhH-HHHHHHHHHHhhc----CCCCeEEEeCCCCcccHHHHH-HcCCCEEEEccccc
Q 029661 98 DLVLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVF 167 (190)
Q Consensus 98 d~i~~m~v~p----G~~gq~~~~~~~-~ki~~~~~~~~~~----~~~~~i~vdGGI~~e~~~~~~-~aGad~~VvGsaI~ 167 (190)
+. ++..-+| |+ |+.-.|+-. +-...+|+.+.+. ..+++|.-+|.++++|+.++. ....|++-+|++=.
T Consensus 168 ~~-ivIAYEPvWAIGT-G~~At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgASL 245 (260)
T PRK14566 168 DN-AIIAYEPLWAVGT-GKSATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASL 245 (260)
T ss_pred Cc-EEEEECcHHhcCC-CCCCCHHHHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcCCCCCeEEechHhc
Confidence 11 2335566 43 444333333 2234555554322 125789999999999999874 45599999999866
Q ss_pred CCCCHHH
Q 029661 168 GAKDYAE 174 (190)
Q Consensus 168 ~~~dp~~ 174 (190)
++++..+
T Consensus 246 ~~~~F~~ 252 (260)
T PRK14566 246 NSTEFLS 252 (260)
T ss_pred CHHHHHH
Confidence 6544433
No 277
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=97.07 E-value=0.049 Score=50.20 Aligned_cols=149 Identities=16% Similarity=0.102 Sum_probs=90.6
Q ss_pred CHHH-HHHhccC-C--CCcEEEEEee-cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC--
Q 029661 12 GPLV-VDALRPV-T--DLPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-- 84 (190)
Q Consensus 12 G~~~-v~~i~~~-~--~~~i~~hlmv-~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~-- 84 (190)
.++. .++|.+. + ++..+. ..+ .++....+.+.+.+.|.+-+|... +. ...+.++.+++.++++.=++...
T Consensus 40 ~~~~~a~~i~~~l~~~~v~~Vg-Vfv~~~~~~i~~~~~~~~ld~vQLHG~e-~~-~~~~~~~~l~~~~~~iika~~v~~~ 116 (610)
T PRK13803 40 GNKFLAPNLEKAIRKAGGRPVG-VFVNESAKAMLKFSKKNGIDFVQLHGAE-SK-AEPAYCQRIYKKSIKKIGSFLIDDA 116 (610)
T ss_pred CHHHHHHHHHHhCCCCCCCEEE-EEeCCCHHHHHHHHHhcCCCEEEECCCC-Cc-ccHHHHHHhhhcCCcEEEEEEeCCh
Confidence 4555 5555542 2 232333 234 456777777889999999999763 11 12456777777677766555443
Q ss_pred CCHHHHHHhhcccceEEEEeeec--CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHc-CCC--E
Q 029661 85 TSLSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GAN--A 159 (190)
Q Consensus 85 t~~~~~~~~~~~~d~i~~m~v~p--G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~a-Gad--~ 159 (190)
..++.+.++.+.+|++++=+-.| |.+|+.|.-..+ + .+. ...++.+.|||+++|+.++++. .+. +
T Consensus 117 ~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdw~~~---~---~~~----~~~p~iLAGGL~peNV~~ai~~~~p~~~g 186 (610)
T PRK13803 117 FGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFDWEKF---Y---NYN----FKFPFFLSGGLSPTNFDRIINLTHPQILG 186 (610)
T ss_pred hhHHHHHhhhccCCEEEEcCCCCCCCCCCCccChHHh---h---hcc----cCCcEEEEeCCCHHHHHHHHhhhCCCceE
Confidence 33555666666689988755433 445777764332 2 221 1235779999999999998873 344 5
Q ss_pred EEEcccccCC---CCHH
Q 029661 160 LVAGSAVFGA---KDYA 173 (190)
Q Consensus 160 ~VvGsaI~~~---~dp~ 173 (190)
+=+-|.+=.. .|+.
T Consensus 187 VDvsSGvE~~pG~KD~~ 203 (610)
T PRK13803 187 IDVSSGFEDSPGNKKLT 203 (610)
T ss_pred EEccCcccCCCCCcCHH
Confidence 5555666533 4664
No 278
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=97.06 E-value=0.0097 Score=50.94 Aligned_cols=138 Identities=20% Similarity=0.213 Sum_probs=78.4
Q ss_pred HHHHHHcCCCEEEEcccCCCc----------chHHHHHHHHHHhCCcEEEE--EcCCC------------CH----HHHH
Q 029661 40 VPDFIKAGADIVSVHCEQSST----------IHLHRTLNQIKDLGAKAGVV--LNPAT------------SL----SAIE 91 (190)
Q Consensus 40 i~~~~~~Gad~v~vh~e~~~~----------~~~~~~i~~i~~~g~~~g~~--i~p~t------------~~----~~~~ 91 (190)
++.+.+.|||.|.+|.-.++. ..+.++.+.++++|+...+- ..+.. .. ...+
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r 191 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTME 191 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHH
Confidence 688999999999998543222 13677888899999998774 22221 11 1122
Q ss_pred Hhhc---ccceEEE-Eeee----cCCCCccc---chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc----ccHHHHHHcC
Q 029661 92 CVLD---VVDLVLI-MSVN----PGFGGQSF---IESQVKKISDLRRMCLEKGVNPWIEVDGGVGP----KNAYKVIEAG 156 (190)
Q Consensus 92 ~~~~---~~d~i~~-m~v~----pG~~gq~~---~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~----e~~~~~~~aG 156 (190)
...+ .+|.+=+ .+++ .|++.... ..+..+..+++.+..+ -..|...||.+. +++....++|
T Consensus 192 ~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~----~P~vvlsgG~~~~~f~~~l~~A~~aG 267 (340)
T PRK12858 192 EFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD----LPFIFLSAGVSPELFRRTLEFACEAG 267 (340)
T ss_pred HHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCC----CCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 2221 2566532 1111 13321110 1112233333333221 134556999985 4777788999
Q ss_pred C--CEEEEcccccCC-------CCHHHHHHHHHH
Q 029661 157 A--NALVAGSAVFGA-------KDYAEAIKGIKT 181 (190)
Q Consensus 157 a--d~~VvGsaI~~~-------~dp~~~~~~l~~ 181 (190)
| .++.+||++|+. +|.+....+|+.
T Consensus 268 a~f~Gvl~GRniwq~~v~~~~~~~~~~~~~~l~~ 301 (340)
T PRK12858 268 ADFSGVLCGRATWQDGIEPYAAEGEEARRAWLNT 301 (340)
T ss_pred CCccchhhhHHHHhhhhccccCCCHHHHHHHHHH
Confidence 9 999999999974 455555455543
No 279
>PLN02411 12-oxophytodienoate reductase
Probab=97.06 E-value=0.016 Score=50.57 Aligned_cols=130 Identities=21% Similarity=0.290 Sum_probs=77.6
Q ss_pred HHHHcCCCEEEEcccCC--------------------Ccc----hHHHHHHHHHHh-CC-cEEEEEcCCCC---------
Q 029661 42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GA-KAGVVLNPATS--------- 86 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~~----~~~~~i~~i~~~-g~-~~g~~i~p~t~--------- 86 (190)
.+.++|.|+|-+|+-.+ +.+ =+.++++++|+. |- .+|+=++|...
T Consensus 173 rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~ 252 (391)
T PLN02411 173 NAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDP 252 (391)
T ss_pred HHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcc
Confidence 35789999999995332 111 145788888885 32 37887887321
Q ss_pred HH---HHHHhhc--------ccceEEEEeeecCCCCc----ccchh--hHHHHHHHHHHHhhcCCCCeEEEeCCCCcccH
Q 029661 87 LS---AIECVLD--------VVDLVLIMSVNPGFGGQ----SFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 149 (190)
Q Consensus 87 ~~---~~~~~~~--------~~d~i~~m~v~pG~~gq----~~~~~--~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~ 149 (190)
.+ .+.+.++ .+|+|-+.+-.....++ ...+. .....+++|+.. +.++.+.||++++..
T Consensus 253 ~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v-----~~pvi~~G~i~~~~a 327 (391)
T PLN02411 253 LNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY-----QGTFMCSGGFTRELG 327 (391)
T ss_pred hhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc-----CCCEEEECCCCHHHH
Confidence 11 1222232 26777653211000011 01111 112234455543 357889999999999
Q ss_pred HHHHHcC-CCEEEEcccccCCCCHHHHH
Q 029661 150 YKVIEAG-ANALVAGSAVFGAKDYAEAI 176 (190)
Q Consensus 150 ~~~~~aG-ad~~VvGsaI~~~~dp~~~~ 176 (190)
.++++.| ||.+.+|+++...+|....+
T Consensus 328 ~~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 328 MQAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred HHHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 9999999 99999999998877765443
No 280
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=97.05 E-value=0.0067 Score=52.38 Aligned_cols=101 Identities=22% Similarity=0.315 Sum_probs=68.0
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
+..+.++.||+.++.|+.+.=- .+++ ..+.+.++|+|.|.+-.-- ...
T Consensus 211 ~tW~di~wlr~~~~~PiivKgV-~~~~-dA~~a~~~Gvd~I~VsnhG--Grq---------------------------- 258 (367)
T PLN02493 211 LSWKDVQWLQTITKLPILVKGV-LTGE-DARIAIQAGAAGIIVSNHG--ARQ---------------------------- 258 (367)
T ss_pred CCHHHHHHHHhccCCCEEeecC-CCHH-HHHHHHHcCCCEEEECCCC--CCC----------------------------
Confidence 3457788899888888887432 3433 4567888899988875431 100
Q ss_pred HHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661 91 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 91 ~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~ 167 (190)
.| ..+.+++-|.++++... .+++|.+||||+ ..++-+....|||.+-+|+.+.
T Consensus 259 ------ld---------------~~~~t~~~L~ei~~av~---~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l 312 (367)
T PLN02493 259 ------LD---------------YVPATISALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 312 (367)
T ss_pred ------CC---------------CchhHHHHHHHHHHHhC---CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 01 11334555666655443 247899999999 4677788899999999999755
No 281
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.05 E-value=0.0023 Score=55.52 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=71.5
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 91 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~ 91 (190)
..+.|+.||+.++.|+.+.=- .+++ -...+.++|+|.|.+-.-- .+
T Consensus 233 tW~di~~lr~~~~~pvivKgV-~s~~-dA~~a~~~Gvd~I~Vs~hG-----------------Gr--------------- 278 (381)
T PRK11197 233 SWKDLEWIRDFWDGPMVIKGI-LDPE-DARDAVRFGADGIVVSNHG-----------------GR--------------- 278 (381)
T ss_pred CHHHHHHHHHhCCCCEEEEec-CCHH-HHHHHHhCCCCEEEECCCC-----------------CC---------------
Confidence 346688888877777777432 3333 4556777888888764321 00
Q ss_pred HhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCC-
Q 029661 92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA- 169 (190)
Q Consensus 92 ~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~- 169 (190)
+.|. .+.+++-+.++++... .+++|.+||||+ ..++-+....|||.+-+|+.+..+
T Consensus 279 ----~~d~---------------~~~t~~~L~~i~~a~~---~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~l 336 (381)
T PRK11197 279 ----QLDG---------------VLSSARALPAIADAVK---GDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYAL 336 (381)
T ss_pred ----CCCC---------------cccHHHHHHHHHHHhc---CCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHH
Confidence 0000 0223444555544332 247899999999 578888899999999999976532
Q ss_pred -----CCHHHHHHHHHHhhc
Q 029661 170 -----KDYAEAIKGIKTSKR 184 (190)
Q Consensus 170 -----~dp~~~~~~l~~~~~ 184 (190)
+.....++.|++.++
T Consensus 337 a~~G~~gv~~~l~~l~~El~ 356 (381)
T PRK11197 337 AAAGQAGVANLLDLIEKEMR 356 (381)
T ss_pred HhccHHHHHHHHHHHHHHHH
Confidence 334455555555443
No 282
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.05 E-value=0.014 Score=49.76 Aligned_cols=124 Identities=18% Similarity=0.257 Sum_probs=77.5
Q ss_pred HHHHcCCCEEEEcccCC-----------Ccc-------------hHHHHHHHHHHh---CCcEEEEEcCC------CCHH
Q 029661 42 DFIKAGADIVSVHCEQS-----------STI-------------HLHRTLNQIKDL---GAKAGVVLNPA------TSLS 88 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~-----------~~~-------------~~~~~i~~i~~~---g~~~g~~i~p~------t~~~ 88 (190)
.+.++|+|+|-+|.-.+ ... -+.++++.+|+. +..+++-+++. ...+
T Consensus 162 ~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~ 241 (336)
T cd02932 162 RAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLE 241 (336)
T ss_pred HHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHH
Confidence 45779999999995210 010 135788888875 56678777753 2233
Q ss_pred HHHHh---hc--ccceEEEEeeecC-CCCc---cc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-
Q 029661 89 AIECV---LD--VVDLVLIMSVNPG-FGGQ---SF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG- 156 (190)
Q Consensus 89 ~~~~~---~~--~~d~i~~m~v~pG-~~gq---~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG- 156 (190)
...++ ++ .+|+|-+ .-| ...+ .. ....++..+++|+.. +++|...|||+ ++.+.++++.|
T Consensus 242 e~~~ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~G~i~t~~~a~~~l~~g~ 313 (336)
T cd02932 242 DSVELAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEA-----GIPVIAVGLITDPEQAEAILESGR 313 (336)
T ss_pred HHHHHHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 33232 22 2677754 222 1111 11 112234455555543 47899999995 89999999998
Q ss_pred CCEEEEcccccCCCCHH
Q 029661 157 ANALVAGSAVFGAKDYA 173 (190)
Q Consensus 157 ad~~VvGsaI~~~~dp~ 173 (190)
+|++-+||+++..++.-
T Consensus 314 aD~V~~gR~~i~dP~~~ 330 (336)
T cd02932 314 ADLVALGRELLRNPYWP 330 (336)
T ss_pred CCeehhhHHHHhCccHH
Confidence 99999999999877653
No 283
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=97.03 E-value=0.016 Score=48.92 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=85.8
Q ss_pred HHHHHHhccCC-CCcEEEEEeecChHHHHH---HHHHcCCCEEEEcccC----------C-----CcchHHHHHHHHHHh
Q 029661 13 PLVVDALRPVT-DLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKDL 73 (190)
Q Consensus 13 ~~~v~~i~~~~-~~~i~~hlmv~dp~~~i~---~~~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~~ 73 (190)
....+.+...+ ..|+.+.|..+||+.+.+ .+.+.|+|.|=+-.-+ | ..+.+.++++++++.
T Consensus 41 ~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 41 KKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH
T ss_pred cceeecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc
Confidence 34445555543 469999999999987654 3455689998873211 0 123467788888874
Q ss_pred -CCcEEEEEcCCCC--HHHHHHhh---c--ccceEEEEeeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661 74 -GAKAGVVLNPATS--LSAIECVL---D--VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGV 144 (190)
Q Consensus 74 -g~~~g~~i~p~t~--~~~~~~~~---~--~~d~i~~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI 144 (190)
+..+.+=+..... .+...+++ . .++.|. +|+-+..|.+. +.-++.++++++.+ ++++..-|+|
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~---vH~Rt~~q~~~~~a~w~~i~~i~~~~-----~ipvi~NGdI 192 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAIT---VHGRTRKQRYKGPADWEAIAEIKEAL-----PIPVIANGDI 192 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEE---EECS-TTCCCTS---HHHHHHCHHC------TSEEEEESS-
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEE---EecCchhhcCCcccchHHHHHHhhcc-----cceeEEcCcc
Confidence 5555554443222 22222322 2 256664 56555566555 45577777777654 3789999999
Q ss_pred C-cccHHHHHHc-CCCEEEEcccccCCCC
Q 029661 145 G-PKNAYKVIEA-GANALVAGSAVFGAKD 171 (190)
Q Consensus 145 ~-~e~~~~~~~a-Gad~~VvGsaI~~~~d 171 (190)
+ .+.+.++.+. |+|++-+|++.+..+.
T Consensus 193 ~s~~d~~~~~~~tg~dgvMigRgal~nP~ 221 (309)
T PF01207_consen 193 FSPEDAERMLEQTGADGVMIGRGALGNPW 221 (309)
T ss_dssp -SHHHHHHHCCCH-SSEEEESHHHCC-CC
T ss_pred CCHHHHHHHHHhcCCcEEEEchhhhhcCH
Confidence 9 7888887766 9999999998876553
No 284
>PRK07094 biotin synthase; Provisional
Probab=97.00 E-value=0.031 Score=47.17 Aligned_cols=143 Identities=20% Similarity=0.258 Sum_probs=83.7
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC------------cchHHHHHHHHHHhCCcEE--E
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAG--V 79 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~------------~~~~~~~i~~i~~~g~~~g--~ 79 (190)
++++.|++.+++.+.+++-.. ..+.++.+.++|++.+.+..|+.+ .++..+.++.+++.|+.++ +
T Consensus 107 ~l~~~i~~~~~l~i~~~~g~~-~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 107 DIIKEIKKELDVAITLSLGER-SYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred HHHHHHHccCCceEEEecCCC-CHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceE
Confidence 355566654454444433222 245778899999999999887631 1234567788888998764 3
Q ss_pred EEc-CCCCHHHHHHhhc-----ccceEEEEeee--cCCCCcc----cchhhHHHHHHHHHHHhhcCCCCeEEEeCC---C
Q 029661 80 VLN-PATSLSAIECVLD-----VVDLVLIMSVN--PGFGGQS----FIESQVKKISDLRRMCLEKGVNPWIEVDGG---V 144 (190)
Q Consensus 80 ~i~-p~t~~~~~~~~~~-----~~d~i~~m~v~--pG~~gq~----~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG---I 144 (190)
.+. |....+.+.+.+. .++.+.++... ||+--.. -....++.+..+|-++++. .|...++ +
T Consensus 186 iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~----~i~~~~~~~~~ 261 (323)
T PRK07094 186 MVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDA----NIPATTALGTL 261 (323)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCC----CCcccCCcccc
Confidence 444 4545454444332 25666554443 4542111 1234466677777777642 3434444 4
Q ss_pred CcccHHHHHHcCCCEEE
Q 029661 145 GPKNAYKVIEAGANALV 161 (190)
Q Consensus 145 ~~e~~~~~~~aGad~~V 161 (190)
.++-......+|||.+.
T Consensus 262 ~~~~~~~~l~~Gan~~~ 278 (323)
T PRK07094 262 NPDGREKGLKAGANVVM 278 (323)
T ss_pred CchhHHHHHHcCCceec
Confidence 45555678899999776
No 285
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=96.99 E-value=0.016 Score=48.09 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=85.4
Q ss_pred cCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHH
Q 029661 6 VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQI 70 (190)
Q Consensus 6 vpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i 70 (190)
+|.++=--..++.+.+..+..+-+. +.+.. -++.+.++|++.+.+..-+ +. +...+.++.+
T Consensus 48 ~p~~~d~~~~~~~l~~~~~~~~~~~--~~~~~-dv~~A~~~g~~~i~i~~~~-Sd~~~~~~~~~s~~~~~~~~~~~v~~a 123 (274)
T cd07938 48 VPQMADAEEVLAGLPRRPGVRYSAL--VPNLR-GAERALAAGVDEVAVFVSA-SETFSQKNINCSIAESLERFEPVAELA 123 (274)
T ss_pred ccccCCHHHHHhhcccCCCCEEEEE--CCCHH-HHHHHHHcCcCEEEEEEec-CHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3443322244555544333344332 33433 4888999999998886443 11 2355678899
Q ss_pred HHhCCcEEEEEcC--------CCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe
Q 029661 71 KDLGAKAGVVLNP--------ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 137 (190)
Q Consensus 71 ~~~g~~~g~~i~p--------~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~ 137 (190)
|++|+++.+.+.. .++.+.+.++.+. +|.|.+ +.+.|...+..+.+.++.+++..+ +.+
T Consensus 124 k~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~----~~~ 195 (274)
T cd07938 124 KAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISL----GDTIGVATPAQVRRLLEAVLERFP----DEK 195 (274)
T ss_pred HHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCccCHHHHHHHHHHHHHHCC----CCe
Confidence 9999998654331 2344544444332 566654 444565556666777777776543 245
Q ss_pred EEE----eCCCCcccHHHHHHcCCCEEE
Q 029661 138 IEV----DGGVGPKNAYKVIEAGANALV 161 (190)
Q Consensus 138 i~v----dGGI~~e~~~~~~~aGad~~V 161 (190)
|.+ |-|.-..|.-..+++|||.+=
T Consensus 196 i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 196 LALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred EEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 554 556666677788999999763
No 286
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=96.99 E-value=0.02 Score=47.84 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=89.0
Q ss_pred cCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHH
Q 029661 6 VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIK 71 (190)
Q Consensus 6 vpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~ 71 (190)
+|-++--.+.++.|++..+..+-+ ++.|.. -++.+.++|+|.|.+-.... ..+.+.+.++.+|
T Consensus 54 ~p~~~d~~e~~~~l~~~~~~~~~~--l~~~~~-~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak 130 (287)
T PRK05692 54 VPQMADAAEVMAGIQRRPGVTYAA--LTPNLK-GLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAK 130 (287)
T ss_pred ccccccHHHHHHhhhccCCCeEEE--EecCHH-HHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444443456677776544444333 344433 35888999999988864331 0123667899999
Q ss_pred HhCCcEEEEEc-----C---CCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 72 DLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 72 ~~g~~~g~~i~-----p---~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
++|+++...+. | .++.+.+.++.+. +|.|.+ +.+.|...+.++.+.++.+|+..+. .+|
T Consensus 131 ~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~----~~i 202 (287)
T PRK05692 131 QAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISL----GDTIGVGTPGQVRAVLEAVLAEFPA----ERL 202 (287)
T ss_pred HcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEe----ccccCccCHHHHHHHHHHHHHhCCC----CeE
Confidence 99998864333 2 2345555554432 676654 4455665666777778888776532 345
Q ss_pred EE----eCCCCcccHHHHHHcCCCEE
Q 029661 139 EV----DGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 139 ~v----dGGI~~e~~~~~~~aGad~~ 160 (190)
.+ |-|....|.-..+++|||.+
T Consensus 203 ~~H~Hn~~Gla~AN~laA~~aG~~~i 228 (287)
T PRK05692 203 AGHFHDTYGQALANIYASLEEGITVF 228 (287)
T ss_pred EEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 54 55666667778899999986
No 287
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=96.95 E-value=0.038 Score=47.77 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=77.4
Q ss_pred HHHHcCCCEEEEcccCC--------------------Ccch----HHHHHHHHHHh-CC--cEEEEEcCCCC-------H
Q 029661 42 DFIKAGADIVSVHCEQS--------------------STIH----LHRTLNQIKDL-GA--KAGVVLNPATS-------L 87 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~~~----~~~~i~~i~~~-g~--~~g~~i~p~t~-------~ 87 (190)
.+.++|.|+|=+|+-.+ +.++ +.++++++|+. |. -+|+=++|.+. .
T Consensus 157 rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~ 236 (363)
T COG1902 157 RAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTI 236 (363)
T ss_pred HHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCH
Confidence 46889999999996432 1111 45777787773 33 47888887544 2
Q ss_pred HHHHH---hhcc---cceEEEEeeecCCCCc-ccc-h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-
Q 029661 88 SAIEC---VLDV---VDLVLIMSVNPGFGGQ-SFI-E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG- 156 (190)
Q Consensus 88 ~~~~~---~~~~---~d~i~~m~v~pG~~gq-~~~-~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG- 156 (190)
+...+ .++. +|++-+.+-..-..++ ... + .-....++++... ..++.+.|+|+ ++++.++++.|
T Consensus 237 ~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~-----~~pvi~~G~i~~~~~Ae~~l~~g~ 311 (363)
T COG1902 237 EEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV-----RIPVIAVGGINDPEQAEEILASGR 311 (363)
T ss_pred HHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 22222 2322 5777653322110111 111 1 1122233333322 25777888887 89999999998
Q ss_pred CCEEEEcccccCCCCHHHHH
Q 029661 157 ANALVAGSAVFGAKDYAEAI 176 (190)
Q Consensus 157 ad~~VvGsaI~~~~dp~~~~ 176 (190)
||.+.+|+++...+|....+
T Consensus 312 aDlVa~gR~~ladP~~~~k~ 331 (363)
T COG1902 312 ADLVAMGRPFLADPDLVLKA 331 (363)
T ss_pred CCEEEechhhhcCccHHHHH
Confidence 99999999998877765444
No 288
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=96.94 E-value=0.018 Score=52.82 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=94.3
Q ss_pred HHHHHHhccC-CCCcEEEEE----ee---cCh----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 13 PLVVDALRPV-TDLPLDVHL----MI---VEP----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~hl----mv---~dp----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
.+.++.+|+. ++.++-..+ .+ .-| ..|++.+.+.|.|.+-+-......+++...++++|+.|+.+-.+
T Consensus 63 werl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~ 142 (596)
T PRK14042 63 WSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGA 142 (596)
T ss_pred HHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEE
Confidence 4677888875 888888777 22 123 34788889999999887543223567888999999999988665
Q ss_pred ----EcCCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661 81 ----LNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK 147 (190)
Q Consensus 81 ----i~p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e 147 (190)
.+|....+.+.+++.. +|.|.+ ....|...+..+.+.++.+|+..+ .+|.+ +-|....
T Consensus 143 i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~I----kDtaG~l~P~~v~~lv~alk~~~~-----ipi~~H~Hnt~Gla~a 213 (596)
T PRK14042 143 ICYTTSPVHTLDNFLELGKKLAEMGCDSIAI----KDMAGLLTPTVTVELYAGLKQATG-----LPVHLHSHSTSGLASI 213 (596)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCEEEe----CCcccCCCHHHHHHHHHHHHhhcC-----CEEEEEeCCCCCcHHH
Confidence 4455566555554432 566644 334565556666777888876542 45554 4556666
Q ss_pred cHHHHHHcCCCEEE
Q 029661 148 NAYKVIEAGANALV 161 (190)
Q Consensus 148 ~~~~~~~aGad~~V 161 (190)
|.-..+++|||.+=
T Consensus 214 n~laAieaGad~iD 227 (596)
T PRK14042 214 CHYEAVLAGCNHID 227 (596)
T ss_pred HHHHHHHhCCCEEE
Confidence 77788999999763
No 289
>PLN02363 phosphoribosylanthranilate isomerase
Probab=96.92 E-value=0.08 Score=43.58 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=81.7
Q ss_pred CCHHHHHHhccC-CC--CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 11 IGPLVVDALRPV-TD--LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 11 ~G~~~v~~i~~~-~~--~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
..++..++|.+. +. ...+.=+.-.+++...+.+.+.|.|.|-+|... +. +.++.+++ +.++.-+++.....
T Consensus 83 Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~e----~~-~~~~~l~~-~~~iikai~v~~~~ 156 (256)
T PLN02363 83 ISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGNG----SR-AAFSRLVR-ERKVIYVLNANEDG 156 (256)
T ss_pred CCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC----CH-HHHHHhhc-CCcEEEEEEECchH
Confidence 345666777653 22 222222223466777888899999999999753 22 24445543 35555566554332
Q ss_pred ---HHHHH-hhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH-cCCCEEEE
Q 029661 88 ---SAIEC-VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVA 162 (190)
Q Consensus 88 ---~~~~~-~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~-aGad~~Vv 162 (190)
+...+ +...+|++++=+. .|.+|+.|.-..+ +. ..+. ...++.+.|||+++|+.++++ .++.++=+
T Consensus 157 ~~~~~~~~~~~~~~D~~LlDs~-~GGtG~t~DW~~l---~~-~~~~----~~~p~iLAGGL~peNV~~ai~~~~P~GVDV 227 (256)
T PLN02363 157 KLLNVVPEEDCHLADWILVDSA-TGGSGKGFNWQNF---KL-PSVR----SRNGWLLAGGLTPENVHEAVSLLKPTGVDV 227 (256)
T ss_pred HHHHHHHhhccccCCEEEEeCC-CCCCCCccCHHHh---cc-cccc----cCCCEEEECCCCHHHHHHHHHhcCCcEEEe
Confidence 22222 2234788876442 3666777754322 10 0111 123567999999999999876 56777766
Q ss_pred ccccc
Q 029661 163 GSAVF 167 (190)
Q Consensus 163 GsaI~ 167 (190)
-|.+=
T Consensus 228 sSGVE 232 (256)
T PLN02363 228 SSGIC 232 (256)
T ss_pred CCccc
Confidence 66654
No 290
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.90 E-value=0.045 Score=45.71 Aligned_cols=145 Identities=16% Similarity=0.232 Sum_probs=95.9
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEc----
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLN---- 82 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~---- 82 (190)
.++.+.+..++|+-+||==..-.+.+..+.++|++.|-+=....+. ++ -.++++.++.+|+.+ |-.-.
T Consensus 65 ~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~ 144 (283)
T PRK07998 65 IVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDD 144 (283)
T ss_pred HHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccc
Confidence 3344444568899999855434457888999999999984332121 22 356778888888754 32211
Q ss_pred ------CCCCHHHHHHhhcc--cceEE--EEeeecCCCCcccchhh-HHHHHHHHHHHhhcCCCCeEEEeCCCC--cccH
Q 029661 83 ------PATSLSAIECVLDV--VDLVL--IMSVNPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVG--PKNA 149 (190)
Q Consensus 83 ------p~t~~~~~~~~~~~--~d~i~--~m~v~pG~~gq~~~~~~-~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~ 149 (190)
.-|..+...++.+. +|.+. +-++| |... . |.. +++++++++.. ++++..=||-. .+.+
T Consensus 145 ~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~H-G~Y~--~-p~l~~~~l~~I~~~~-----~vPLVlHGgSG~~~e~~ 215 (283)
T PRK07998 145 HVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVH-GLED--I-PRIDIPLLKRIAEVS-----PVPLVIHGGSGIPPEIL 215 (283)
T ss_pred ccccccccCCHHHHHHHHHHhCcCeeehhccccc-cCCC--C-CCcCHHHHHHHHhhC-----CCCEEEeCCCCCCHHHH
Confidence 13667777777753 78653 22333 2221 1 333 67777777754 47888888776 5899
Q ss_pred HHHHHcCCCEEEEcccccC
Q 029661 150 YKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 150 ~~~~~aGad~~VvGsaI~~ 168 (190)
+++++.|+.-+-+||.+..
T Consensus 216 ~~ai~~Gi~KiNi~Tel~~ 234 (283)
T PRK07998 216 RSFVNYKVAKVNIASDLRK 234 (283)
T ss_pred HHHHHcCCcEEEECHHHHH
Confidence 9999999999999998864
No 291
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=96.90 E-value=0.11 Score=41.55 Aligned_cols=159 Identities=15% Similarity=0.168 Sum_probs=97.2
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHH---HHcCCCE-EEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDF---IKAGADI-VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 89 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~---~~~Gad~-v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~ 89 (190)
+.+++|++..+.++.+-+.-.|++..++.+ .+.+-.. |=++. ...--+.++.+++.|+++++..-- ++.+.
T Consensus 41 ~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKIP~----T~~gl~ai~~L~~~gi~v~~T~V~-s~~Qa 115 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKIPV----TEDGLKAIKKLSEEGIKTNVTAIF-SAAQA 115 (211)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEEcC----cHhHHHHHHHHHHcCCceeeEEec-CHHHH
Confidence 445555554444666666566777665543 4442222 22332 223456788888889888775431 22222
Q ss_pred HHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC-
Q 029661 90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG- 168 (190)
Q Consensus 90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~- 168 (190)
+.-....++||.. .-|.-. .......+.++++.+++..++.+.+|.+.|=-|++++.++..+|+|.+-++-.+++
T Consensus 116 ~~Aa~AGA~yvsP---~vgR~~-~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~ 191 (211)
T cd00956 116 LLAAKAGATYVSP---FVGRID-DLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQ 191 (211)
T ss_pred HHHHHcCCCEEEE---ecChHh-hcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHH
Confidence 3333345777642 223210 11223467788888888877777888777777799999999999999999976664
Q ss_pred ---CCCHHHHHHHHHH
Q 029661 169 ---AKDYAEAIKGIKT 181 (190)
Q Consensus 169 ---~~dp~~~~~~l~~ 181 (190)
.+-..+.++.+.+
T Consensus 192 l~~~~~t~~~v~~F~~ 207 (211)
T cd00956 192 LLKHPLTDKGVEKFLE 207 (211)
T ss_pred HhcCccHHHHHHHHHH
Confidence 4555677776654
No 292
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.88 E-value=0.023 Score=52.13 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=89.0
Q ss_pred HHHHHHhccC-CCCcEEEEEeec-------Ch----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 13 PLVVDALRPV-TDLPLDVHLMIV-------EP----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~hlmv~-------dp----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
.+.++.+|+. ++.++...+-=. -| ..+++.+.++|+|++.+-......+++...++.+|+.|..+-..
T Consensus 64 ~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~ 143 (593)
T PRK14040 64 WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGT 143 (593)
T ss_pred HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEE
Confidence 3567777775 777776544311 12 34688889999999887543212456778999999999985332
Q ss_pred ----EcCCCCHHHHHHhhc-----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661 81 ----LNPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK 147 (190)
Q Consensus 81 ----i~p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e 147 (190)
.+|....+.+.+++. .+|.|.+ ....|-..+..+.+.++.+|+.+ +.+|.+ +-|....
T Consensus 144 i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i----~Dt~G~l~P~~~~~lv~~lk~~~-----~~pi~~H~Hnt~GlA~A 214 (593)
T PRK14040 144 LSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI----KDMAGLLKPYAAYELVSRIKKRV-----DVPLHLHCHATTGLSTA 214 (593)
T ss_pred EEEeeCCccCHHHHHHHHHHHHHcCCCEEEE----CCCCCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCCCchHHH
Confidence 356555555555443 2676654 33445555666677777777654 245554 5566666
Q ss_pred cHHHHHHcCCCEE
Q 029661 148 NAYKVIEAGANAL 160 (190)
Q Consensus 148 ~~~~~~~aGad~~ 160 (190)
|.-..+++|||.+
T Consensus 215 n~laAieAGa~~v 227 (593)
T PRK14040 215 TLLKAIEAGIDGV 227 (593)
T ss_pred HHHHHHHcCCCEE
Confidence 7778899999976
No 293
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=96.88 E-value=0.0083 Score=51.83 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC---C---CCHHHHHHHHHHhh
Q 029661 119 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG---A---KDYAEAIKGIKTSK 183 (190)
Q Consensus 119 ~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~---~---~dp~~~~~~l~~~~ 183 (190)
++-|.++++..+ .+++|.+||||+ ..++.+....|||.+-+|+.+.. . +.....++.|++.+
T Consensus 270 ~~~L~ei~~av~---~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El 338 (367)
T TIGR02708 270 FDSLQEVAEAVD---KRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKEL 338 (367)
T ss_pred HHHHHHHHHHhC---CCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 344455554332 247899999999 57788888899999999998442 1 23345555555544
No 294
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.79 E-value=0.046 Score=47.18 Aligned_cols=122 Identities=19% Similarity=0.244 Sum_probs=74.7
Q ss_pred HHHHcCCCEEEEcccCC--------------------Ccc----hHHHHHHHHHHh-CC-cEEEEEcCCC---------C
Q 029661 42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GA-KAGVVLNPAT---------S 86 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~~----~~~~~i~~i~~~-g~-~~g~~i~p~t---------~ 86 (190)
.+.++|+|+|-+|+-.+ +.+ =+.++++++|+. |- .+|+=+++.. .
T Consensus 167 rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~ 246 (362)
T PRK10605 167 NAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPN 246 (362)
T ss_pred HHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCC
Confidence 35789999999995331 111 144788888874 21 3677676531 2
Q ss_pred HHH-HH---Hhhc--ccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC-CC
Q 029661 87 LSA-IE---CVLD--VVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-AN 158 (190)
Q Consensus 87 ~~~-~~---~~~~--~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG-ad 158 (190)
.+. .. +.++ .+|+|-+-+ +... +..+. ..--+++|+.. +.++.+.|+++++.+.++++.| +|
T Consensus 247 ~~e~~~~~~~~L~~~giD~i~vs~--~~~~~~~~~~---~~~~~~ik~~~-----~~pv~~~G~~~~~~ae~~i~~G~~D 316 (362)
T PRK10605 247 EEADALYLIEQLGKRGIAYLHMSE--PDWAGGEPYS---DAFREKVRARF-----HGVIIGAGAYTAEKAETLIGKGLID 316 (362)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecc--ccccCCcccc---HHHHHHHHHHC-----CCCEEEeCCCCHHHHHHHHHcCCCC
Confidence 222 22 2232 268886532 2222 22221 22224444443 3568888999999999999988 99
Q ss_pred EEEEcccccCCCCHH
Q 029661 159 ALVAGSAVFGAKDYA 173 (190)
Q Consensus 159 ~~VvGsaI~~~~dp~ 173 (190)
.+-+||++...+|..
T Consensus 317 ~V~~gR~~iadPd~~ 331 (362)
T PRK10605 317 AVAFGRDYIANPDLV 331 (362)
T ss_pred EEEECHHhhhCccHH
Confidence 999999998877654
No 295
>PRK08508 biotin synthase; Provisional
Probab=96.78 E-value=0.13 Score=42.70 Aligned_cols=163 Identities=20% Similarity=0.209 Sum_probs=91.9
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------CcchHH---HHHHHHHHhCCcE--EE
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------STIHLH---RTLNQIKDLGAKA--GV 79 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------~~~~~~---~~i~~i~~~g~~~--g~ 79 (190)
++++.||+. +++.+.+-+=..+ .+.++.++++|+|.+..-.|+. +..+.. +.++.+++.|+++ ++
T Consensus 79 ei~~~ik~~~p~l~i~~s~G~~~-~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 79 EAAKAVKKEVPGLHLIACNGTAS-VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred HHHHHHHhhCCCcEEEecCCCCC-HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeeccee
Confidence 455666654 3332222111112 4467889999999999765542 112233 4677788999887 45
Q ss_pred EEcCCCCHHHHHHhh----c-ccceEEEEeeec--CCC--Cccc-chhhHHHHHHHHHHHhhcCCCCeEEEeCCCC---c
Q 029661 80 VLNPATSLSAIECVL----D-VVDLVLIMSVNP--GFG--GQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG---P 146 (190)
Q Consensus 80 ~i~p~t~~~~~~~~~----~-~~d~i~~m~v~p--G~~--gq~~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~---~ 146 (190)
.+......+...+.+ + ..|.|-+.-..| |+. .+.. ..+.++-+.-.|-+.+ +..|-+.||-. .
T Consensus 158 I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp----~~~i~~~~gr~~~~~ 233 (279)
T PRK08508 158 IFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALP----NARLMVAGGREVVFG 233 (279)
T ss_pred EEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CceeeecCChhhhch
Confidence 555554444333322 2 145454333333 332 1111 1234444555555554 35688899873 2
Q ss_pred ccHHHHHHcCCCEEEEcccccCC-CCHHHHHHHHHH
Q 029661 147 KNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGIKT 181 (190)
Q Consensus 147 e~~~~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~~ 181 (190)
+.-+.+..+|||.+++|-+++.. .++++-.+-+++
T Consensus 234 ~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~~~ 269 (279)
T PRK08508 234 ERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKLKS 269 (279)
T ss_pred hhHHHHHhcCCcceeecCcccCCCCChHHHHHHHHH
Confidence 34556788999999999999865 456655555554
No 296
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.76 E-value=0.034 Score=48.32 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=75.4
Q ss_pred HHHcCCCEEEEcccC-C--------------------Cc----chHHHHHHHHHHh---CCcEEEEEcCCC---------
Q 029661 43 FIKAGADIVSVHCEQ-S--------------------ST----IHLHRTLNQIKDL---GAKAGVVLNPAT--------- 85 (190)
Q Consensus 43 ~~~~Gad~v~vh~e~-~--------------------~~----~~~~~~i~~i~~~---g~~~g~~i~p~t--------- 85 (190)
+.++|.|+|-+|.-. + +. .-+.++++.+|+. +..+++=+++..
T Consensus 159 a~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~ 238 (382)
T cd02931 159 AKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGA 238 (382)
T ss_pred HHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccc
Confidence 468999999998632 1 00 1145788888884 456777676521
Q ss_pred -----------CHHHHHHh---hc--ccceEEEEeeecCCCCc------c-cch-hh-HHHHHHHHHHHhhcCCCCeEEE
Q 029661 86 -----------SLSAIECV---LD--VVDLVLIMSVNPGFGGQ------S-FIE-SQ-VKKISDLRRMCLEKGVNPWIEV 140 (190)
Q Consensus 86 -----------~~~~~~~~---~~--~~d~i~~m~v~pG~~gq------~-~~~-~~-~~ki~~~~~~~~~~~~~~~i~v 140 (190)
..+...++ ++ .+|+|-+ ..|...+ . +.+ .. ++..+++|+.. +.++.+
T Consensus 239 ~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~ 310 (382)
T cd02931 239 LPGEEFQEKGRDLEEGLKAAKILEEAGYDALDV---DAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-----DVPVIM 310 (382)
T ss_pred ccccccccCCCCHHHHHHHHHHHHHhCCCEEEe---CCCCCcccccccCCccCCcchhHHHHHHHHHHC-----CCCEEE
Confidence 12322222 22 2688754 3332111 0 111 11 23345555543 468899
Q ss_pred eCCCC-cccHHHHHHcC-CCEEEEcccccCCCCHH
Q 029661 141 DGGVG-PKNAYKVIEAG-ANALVAGSAVFGAKDYA 173 (190)
Q Consensus 141 dGGI~-~e~~~~~~~aG-ad~~VvGsaI~~~~dp~ 173 (190)
.|||+ ++++.++++.| +|.+-+|+++...+|.-
T Consensus 311 ~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~ 345 (382)
T cd02931 311 AGRMEDPELASEAINEGIADMISLGRPLLADPDVV 345 (382)
T ss_pred eCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHH
Confidence 99996 78899998876 99999999998877654
No 297
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.014 Score=47.08 Aligned_cols=114 Identities=23% Similarity=0.322 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHhCCcEEEEEcCCCCH-HHHHHhhcccceEEEEee--ecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 62 HLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLIMSV--NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 62 ~~~~~i~~i~~~g~~~g~~i~p~t~~-~~~~~~~~~~d~i~~m~v--~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
++.+++++++.. ++=|+.+-|-+.. -.+.+-++.+....+|.. ..| +|+.. .....|+.+++. .++++
T Consensus 115 D~~etl~Aae~L-v~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIG-Sg~G~--~n~~~l~iiie~-----a~VPv 185 (262)
T COG2022 115 DPIETLKAAEQL-VKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIG-SGLGL--QNPYNLEIIIEE-----ADVPV 185 (262)
T ss_pred ChHHHHHHHHHH-HhCCCEEeeccCCCHHHHHHHHhcCceEecccccccc-CCcCc--CCHHHHHHHHHh-----CCCCE
Confidence 456666666653 1223333332221 113333444555556643 234 34332 223334444433 35899
Q ss_pred EEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 139 EVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 139 ~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
.||-||. +.++.+..+.|+|.+-+-|+|-.+.||...++.++-.++
T Consensus 186 iVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 186 IVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred EEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 9999999 799999999999999999999999999999999876543
No 298
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.72 E-value=0.0083 Score=48.49 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=73.4
Q ss_pred HHHHHHcCCCEEEEcccC---CC------cchHHHHHHHHHHhCCcEEEEEcCCCCH----------HHHHHhhc--ccc
Q 029661 40 VPDFIKAGADIVSVHCEQ---SS------TIHLHRTLNQIKDLGAKAGVVLNPATSL----------SAIECVLD--VVD 98 (190)
Q Consensus 40 i~~~~~~Gad~v~vh~e~---~~------~~~~~~~i~~i~~~g~~~g~~i~p~t~~----------~~~~~~~~--~~d 98 (190)
++.+.+.|||.|-+...- .+ .+++.++.+.++++|+++.+-..+..+- ....++.. .+|
T Consensus 82 ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD 161 (236)
T PF01791_consen 82 VEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGAD 161 (236)
T ss_dssp HHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCC
Confidence 678899999988875321 01 2356778888888888887763322211 12222221 268
Q ss_pred eEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcC--CCCeEEEeCCC------C-cccHHHHHHcCC--CEEEEccccc
Q 029661 99 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG--VNPWIEVDGGV------G-PKNAYKVIEAGA--NALVAGSAVF 167 (190)
Q Consensus 99 ~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~--~~~~i~vdGGI------~-~e~~~~~~~aGa--d~~VvGsaI~ 167 (190)
+|=. ..|+. ...+.+.++.+++...... .++.|-+.||+ + .+.+.+++++|| -++..|+.||
T Consensus 162 ~vKt--~tg~~-----~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 162 FVKT--STGKP-----VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp EEEE--E-SSS-----SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred EEEe--cCCcc-----ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 8742 22322 3344555666666665322 23449999999 4 456666779999 8999999998
Q ss_pred C
Q 029661 168 G 168 (190)
Q Consensus 168 ~ 168 (190)
+
T Consensus 235 q 235 (236)
T PF01791_consen 235 Q 235 (236)
T ss_dssp T
T ss_pred c
Confidence 6
No 299
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=96.72 E-value=0.038 Score=49.22 Aligned_cols=141 Identities=16% Similarity=0.228 Sum_probs=91.5
Q ss_pred HHHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 13 PLVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
.+.++.+|+. ++.++-..+-=.| | ..|++.+.+.|.|.+-+-......+++...++.+|+.|+.+.++
T Consensus 72 werlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~ 151 (468)
T PRK12581 72 WERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLC 151 (468)
T ss_pred HHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4567888875 7777776655323 2 34688889999999887533223567889999999999997554
Q ss_pred Ec----CCCCHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661 81 LN----PATSLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK 147 (190)
Q Consensus 81 i~----p~t~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e 147 (190)
++ |...++.+.+++ + .+|.|.+ ....|...+..+.+.++.+|+.. +.+|.+ +-|....
T Consensus 152 i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~I----kDtaG~l~P~~v~~Lv~alk~~~-----~~pi~~H~Hnt~GlA~A 222 (468)
T PRK12581 152 IAYTTSPVHTLNYYLSLVKELVEMGADSICI----KDMAGILTPKAAKELVSGIKAMT-----NLPLIVHTHATSGISQM 222 (468)
T ss_pred EEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE----CCCCCCcCHHHHHHHHHHHHhcc-----CCeEEEEeCCCCccHHH
Confidence 43 444444333333 2 2666654 34456555666677777777632 355654 4455556
Q ss_pred cHHHHHHcCCCEEEE
Q 029661 148 NAYKVIEAGANALVA 162 (190)
Q Consensus 148 ~~~~~~~aGad~~Vv 162 (190)
|.-..+++|||.+=+
T Consensus 223 n~laAieAGad~vD~ 237 (468)
T PRK12581 223 TYLAAVEAGADRIDT 237 (468)
T ss_pred HHHHHHHcCCCEEEe
Confidence 777889999997643
No 300
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.64 E-value=0.063 Score=47.51 Aligned_cols=147 Identities=20% Similarity=0.262 Sum_probs=79.9
Q ss_pred HHHhccCCCC-c-EEEEEeec--Ch---HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC------------c
Q 029661 16 VDALRPVTDL-P-LDVHLMIV--EP---EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA------------K 76 (190)
Q Consensus 16 v~~i~~~~~~-~-i~~hlmv~--dp---~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~------------~ 76 (190)
|+++|+.++. | +-+.|+.. +| ...++.+.+.|+..|......+ . ++. +...|..|+ +
T Consensus 62 I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~-~-~p~--~v~~r~~G~~~~~~g~~~~~~~ 137 (444)
T TIGR02814 62 IHRIQQALPGGPAYGVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQ-L-TPA--LVRYRAKGLHRDADGRVVIRNR 137 (444)
T ss_pred HHHHHHhcCCCCceEEEecccCCCcccHHHHHHHHHHcCCCEEEeccccC-C-Ccc--hhhhhhccccccccccccccce
Confidence 4456654444 6 99988774 34 2467888899999988764421 1 121 124455554 1
Q ss_pred EEEEEc-CC--------CCHHHHHHhh----------------cccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHh
Q 029661 77 AGVVLN-PA--------TSLSAIECVL----------------DVVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCL 130 (190)
Q Consensus 77 ~g~~i~-p~--------t~~~~~~~~~----------------~~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~ 130 (190)
+..-++ |. .|-+.++.+. ..+|.|.+- .+.|.- |+.-....+..|.++|+...
T Consensus 138 ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~ 216 (444)
T TIGR02814 138 LIAKVSRPEVAEAFMSPAPAHILQKLLAEGRITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLM 216 (444)
T ss_pred EEEecCCHHHHHHhcCCCcHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 111111 00 0111111111 115777553 444321 22111222444444444442
Q ss_pred h-cC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccccc
Q 029661 131 E-KG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 131 ~-~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~ 167 (190)
+ .+ ..++|.+.|||. ++.+..+...|||++.+||...
T Consensus 217 ~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 217 RRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ 257 (444)
T ss_pred hcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence 1 11 246799999996 8999999999999999999754
No 301
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=96.63 E-value=0.05 Score=50.34 Aligned_cols=133 Identities=17% Similarity=0.278 Sum_probs=81.0
Q ss_pred HHHHHHcCCCEEEE-cccC-----CCcchHHHHHHHHHHhCCcEEEEEcCCC-------CHHHHH----Hhhcccce---
Q 029661 40 VPDFIKAGADIVSV-HCEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SLSAIE----CVLDVVDL--- 99 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e~-----~~~~~~~~~i~~i~~~g~~~g~~i~p~t-------~~~~~~----~~~~~~d~--- 99 (190)
.+++.++|++++++ |.|- .+.+.+.+-++.+.++|+.+.+.+.-+. ..+.+. ..++.++.
T Consensus 474 a~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~ 553 (645)
T PRK13962 474 GPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQV 553 (645)
T ss_pred HHHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHc
Confidence 67899999999999 4331 0134455556889999999988887321 112222 22222221
Q ss_pred -EEEEeeec----CCCCcccchhh-HHHHHHHHHHHhhc-----CCCCeEEEeCCCCcccHHHHH-HcCCCEEEEccccc
Q 029661 100 -VLIMSVNP----GFGGQSFIESQ-VKKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVF 167 (190)
Q Consensus 100 -i~~m~v~p----G~~gq~~~~~~-~~ki~~~~~~~~~~-----~~~~~i~vdGGI~~e~~~~~~-~aGad~~VvGsaI~ 167 (190)
=++.+-+| |+ |+.-.|+. -+-.+.+|+.+.+. ..+++|.-+|.++++|+.++. ....|++-+|++=.
T Consensus 554 ~~ivIAYEPVWAIGT-G~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL 632 (645)
T PRK13962 554 KKVVIAYEPVWAIGT-GKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASL 632 (645)
T ss_pred CcEEEEECcHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHhHHHHHhcCCCCCeEEeehHhc
Confidence 12335566 44 44433333 33345566655332 124789999999999999875 45589999998766
Q ss_pred CCCCHH
Q 029661 168 GAKDYA 173 (190)
Q Consensus 168 ~~~dp~ 173 (190)
++++..
T Consensus 633 ~~~~F~ 638 (645)
T PRK13962 633 KAQEFA 638 (645)
T ss_pred CHHHHH
Confidence 544333
No 302
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=96.62 E-value=0.053 Score=46.35 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=87.6
Q ss_pred HHHHHHhccC-CCCcEEEEEee--cChHHHHHHHHHcCCCEEE--EcccCCCcchHHHHHHHHHHhCCcEEEEEc--CCC
Q 029661 13 PLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAGADIVS--VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PAT 85 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~hlmv--~dp~~~i~~~~~~Gad~v~--vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~--p~t 85 (190)
.+.++.+++. ++..+-+.+.- .+. +.++.+.++|+|.|- +|... .+...+.++.+|+.|+++.+.+. +.+
T Consensus 65 ~e~i~~~~~~~~~~~~~~ll~pg~~~~-~dl~~a~~~gvd~iri~~~~~e--~~~~~~~i~~ak~~G~~v~~~l~~a~~~ 141 (337)
T PRK08195 65 EEYIEAAAEVVKQAKIAALLLPGIGTV-DDLKMAYDAGVRVVRVATHCTE--ADVSEQHIGLARELGMDTVGFLMMSHMA 141 (337)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCcccH-HHHHHHHHcCCCEEEEEEecch--HHHHHHHHHHHHHCCCeEEEEEEeccCC
Confidence 4667777553 55566554321 233 457889999999855 55542 34578899999999999876543 445
Q ss_pred CHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC----CCCcccHHHHHHcC
Q 029661 86 SLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG----GVGPKNAYKVIEAG 156 (190)
Q Consensus 86 ~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG----GI~~e~~~~~~~aG 156 (190)
+.+.+.+++.. +|.|.+ .-..|...+..+.+.++.+++.++ .+.+|.+=+ |...-|.-.++++|
T Consensus 142 ~~e~l~~~a~~~~~~Ga~~i~i----~DT~G~~~P~~v~~~v~~l~~~l~---~~i~ig~H~HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 142 PPEKLAEQAKLMESYGAQCVYV----VDSAGALLPEDVRDRVRALRAALK---PDTQVGFHGHNNLGLGVANSLAAVEAG 214 (337)
T ss_pred CHHHHHHHHHHHHhCCCCEEEe----CCCCCCCCHHHHHHHHHHHHHhcC---CCCeEEEEeCCCcchHHHHHHHHHHhC
Confidence 55555554432 566654 334565566777777888877652 235565544 44445777888999
Q ss_pred CCEE
Q 029661 157 ANAL 160 (190)
Q Consensus 157 ad~~ 160 (190)
|+.+
T Consensus 215 a~~i 218 (337)
T PRK08195 215 ATRI 218 (337)
T ss_pred CCEE
Confidence 9943
No 303
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=96.60 E-value=0.096 Score=42.90 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=83.5
Q ss_pred CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHH--------------------------HHhCCc
Q 029661 23 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI--------------------------KDLGAK 76 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i--------------------------~~~g~~ 76 (190)
.+....+..--.+| ..++.+.++|+++|.++.-. +.++..++++++ +..+-.
T Consensus 61 ~g~~~~VRvp~~~~-~~i~r~LD~Ga~gIivP~v~-taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~ 138 (249)
T TIGR03239 61 SASAPVVRPPWNEP-VIIKRLLDIGFYNFLIPFVE-SAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDN 138 (249)
T ss_pred cCCCcEEECCCCCH-HHHHHHhcCCCCEEEecCcC-CHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccc
Confidence 34444554433444 35788999999999997543 245555555322 222223
Q ss_pred EEEEEcCCCC--HHHHHHhhc--ccceEEEE----eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc
Q 029661 77 AGVVLNPATS--LSAIECVLD--VVDLVLIM----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 148 (190)
Q Consensus 77 ~g~~i~p~t~--~~~~~~~~~--~~d~i~~m----~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~ 148 (190)
+.+...-+|+ ++.+++++. .+|.+.+- +..-|..++...|+...-+.++..-..+.+.. ..+ ..-+++.
T Consensus 139 ~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~--~g~-~~~~~~~ 215 (249)
T TIGR03239 139 ITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKP--CGI-LAPVEAD 215 (249)
T ss_pred cEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCC--EEE-cCCCHHH
Confidence 3333333454 566777764 37777763 22234445555677777777777666665532 322 3456788
Q ss_pred HHHHHHcCCCEEEEccc
Q 029661 149 AYKVIEAGANALVAGSA 165 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsa 165 (190)
.+.+++.|++.+++|+-
T Consensus 216 ~~~~~~~G~~~~~~~~D 232 (249)
T TIGR03239 216 ARRYLEWGATFVAVGSD 232 (249)
T ss_pred HHHHHHcCCCEEEEhHH
Confidence 99999999999999964
No 304
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=96.55 E-value=0.055 Score=44.70 Aligned_cols=116 Identities=17% Similarity=0.116 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCC
Q 029661 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFG 110 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~ 110 (190)
..++.+.++|++.|.+-......+...+.++.+|++|.++.+.+. ..++.+.+.+++.. +|.|.+ +-+.
T Consensus 86 ~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l----~DT~ 161 (266)
T cd07944 86 DLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYI----VDSF 161 (266)
T ss_pred HHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEE----ecCC
Confidence 567778889999865542211255678889999999998876533 34566666655532 566654 3445
Q ss_pred CcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661 111 GQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 111 gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~ 160 (190)
|...+..+.+.++.+++..++ +.+|.+ +-|....|.-..+++||+.+
T Consensus 162 G~~~P~~v~~lv~~l~~~~~~---~~~i~~H~Hn~~Gla~AN~laA~~aGa~~v 212 (266)
T cd07944 162 GSMYPEDIKRIISLLRSNLDK---DIKLGFHAHNNLQLALANTLEAIELGVEII 212 (266)
T ss_pred CCCCHHHHHHHHHHHHHhcCC---CceEEEEeCCCccHHHHHHHHHHHcCCCEE
Confidence 655566667777777765432 245654 44555557778889999865
No 305
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.53 E-value=0.031 Score=47.99 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=75.4
Q ss_pred HHHHcCCCEEEEcccCC--------C----------------cchHHHHHHHHHHh-CC--cEEEEEcCC------CCHH
Q 029661 42 DFIKAGADIVSVHCEQS--------S----------------TIHLHRTLNQIKDL-GA--KAGVVLNPA------TSLS 88 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------~----------------~~~~~~~i~~i~~~-g~--~~g~~i~p~------t~~~ 88 (190)
.+.++|.|+|-+|.-.+ + ..-+.++++.+|+. |. .+++=+++. .+.+
T Consensus 145 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~ 224 (353)
T cd02930 145 LAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWE 224 (353)
T ss_pred HHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHH
Confidence 35778999999997210 1 11245788888884 44 455545532 2333
Q ss_pred HHH---Hhhc--ccceEEEEe-ee--cCCCCc-ccchh-hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-
Q 029661 89 AIE---CVLD--VVDLVLIMS-VN--PGFGGQ-SFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG- 156 (190)
Q Consensus 89 ~~~---~~~~--~~d~i~~m~-v~--pG~~gq-~~~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG- 156 (190)
... +.++ .+|+|-+-. .+ |-...+ .+.+. -++..+++|+.. +.+|.+.|+++ ++.+.++++.|
T Consensus 225 e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~~G~i~~~~~a~~~i~~g~ 299 (353)
T cd02930 225 EVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV-----DIPVIASNRINTPEVAERLLADGD 299 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC-----CCCEEEcCCCCCHHHHHHHHHCCC
Confidence 222 2232 278886521 11 110000 11111 133345555543 47899999996 88999999877
Q ss_pred CCEEEEcccccCCCCHH
Q 029661 157 ANALVAGSAVFGAKDYA 173 (190)
Q Consensus 157 ad~~VvGsaI~~~~dp~ 173 (190)
+|++-+|+++...++.-
T Consensus 300 ~D~V~~gR~~l~dP~~~ 316 (353)
T cd02930 300 ADMVSMARPFLADPDFV 316 (353)
T ss_pred CChhHhhHHHHHCccHH
Confidence 99999999998877654
No 306
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=96.51 E-value=0.057 Score=46.73 Aligned_cols=128 Identities=20% Similarity=0.172 Sum_probs=75.8
Q ss_pred HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-C--CcEEEEEcCCC--------C
Q 029661 42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-G--AKAGVVLNPAT--------S 86 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g--~~~g~~i~p~t--------~ 86 (190)
.+.++|+|+|-+|.-.+ +. .-+.++++.+|+. | ..+++=+++.. .
T Consensus 158 ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~ 237 (370)
T cd02929 158 RARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIES 237 (370)
T ss_pred HHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCC
Confidence 45788999999985431 11 1145788888885 5 34566666432 2
Q ss_pred HHHH---HHhhc-ccceEEEEeeecCCCCc--ccchh--hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-
Q 029661 87 LSAI---ECVLD-VVDLVLIMSVNPGFGGQ--SFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG- 156 (190)
Q Consensus 87 ~~~~---~~~~~-~~d~i~~m~v~pG~~gq--~~~~~--~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG- 156 (190)
.+.. .+.++ .+|++-+-.-.....+. .+.+. .++..+++|+.. +.++.+.||++ ++++.++++.|
T Consensus 238 ~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~~G~i~~~~~~~~~l~~g~ 312 (370)
T cd02929 238 EGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT-----SKPVVGVGRFTSPDKMVEVVKSGI 312 (370)
T ss_pred HHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHC-----CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 3222 22232 36776442111000011 11111 133445555543 46788889997 79999999987
Q ss_pred CCEEEEcccccCCCCHHH
Q 029661 157 ANALVAGSAVFGAKDYAE 174 (190)
Q Consensus 157 ad~~VvGsaI~~~~dp~~ 174 (190)
+|.+-+|+++...+|...
T Consensus 313 ~D~V~~gR~~ladP~l~~ 330 (370)
T cd02929 313 LDLIGAARPSIADPFLPK 330 (370)
T ss_pred CCeeeechHhhhCchHHH
Confidence 999999999998776643
No 307
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.51 E-value=0.057 Score=46.63 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=75.8
Q ss_pred HHHHcCCCEEEEcccCC--------------------Cc----chHHHHHHHHHHh-C--CcEEEEEcCC----------
Q 029661 42 DFIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-G--AKAGVVLNPA---------- 84 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~----~~~~~~i~~i~~~-g--~~~g~~i~p~---------- 84 (190)
.+.++|+|+|-+|.-.+ +. .-+.++++++|+. | ..+++=+++.
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g 231 (361)
T cd04747 152 DARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLA 231 (361)
T ss_pred HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCC
Confidence 45778999999995431 11 1145888999985 4 5678877752
Q ss_pred CCHHHHHHh---hc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC---------------
Q 029661 85 TSLSAIECV---LD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV--------------- 144 (190)
Q Consensus 85 t~~~~~~~~---~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------------- 144 (190)
...+...++ ++ .+|+|-+-+- +...+.+.....+-.+++|+.. +.++.+.|||
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~vs~g--~~~~~~~~~~~~~~~~~~k~~~-----~~pv~~~G~i~~~~~~~~~~~~~~~ 304 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHCSTR--RFWEPEFEGSELNLAGWTKKLT-----GLPTITVGSVGLDGDFIGAFAGDEG 304 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCC--CccCCCcCccchhHHHHHHHHc-----CCCEEEECCcccccccccccccccc
Confidence 112222222 33 2788654221 1112222221223334455443 3678999998
Q ss_pred ----CcccHHHHHHcC-CCEEEEcccccCCCCHH
Q 029661 145 ----GPKNAYKVIEAG-ANALVAGSAVFGAKDYA 173 (190)
Q Consensus 145 ----~~e~~~~~~~aG-ad~~VvGsaI~~~~dp~ 173 (190)
+++.+.++++.| +|.+-+|+++...++.-
T Consensus 305 ~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~ 338 (361)
T cd04747 305 ASPASLDRLLERLERGEFDLVAVGRALLSDPAWV 338 (361)
T ss_pred cccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHH
Confidence 578888888866 99999999988866553
No 308
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=96.50 E-value=0.2 Score=42.74 Aligned_cols=140 Identities=17% Similarity=0.162 Sum_probs=86.4
Q ss_pred HHHHHHhccC-CCCcEEEEEee--cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE--cCCCCH
Q 029661 13 PLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSL 87 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~hlmv--~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i--~p~t~~ 87 (190)
.+.++++++. .+..+-+.+.- .+ .+.++.+.++|+|.|.+-......+...+.++.+|+.|.++...+ ...++.
T Consensus 64 ~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~ 142 (333)
T TIGR03217 64 LEYIEAAADVVKRAKVAVLLLPGIGT-VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPP 142 (333)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCccC-HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCH
Confidence 3556666543 44444443311 12 245788999999998854222113457889999999999987654 344555
Q ss_pred HHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC----cccHHHHHHcCCC
Q 029661 88 SAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG----PKNAYKVIEAGAN 158 (190)
Q Consensus 88 ~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~----~e~~~~~~~aGad 158 (190)
+.+.++++. +|.|.+ +-..|...+.++.+.++.+|+..+ .+.+|.+=+-=| .-|.-..+++||+
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i----~DT~G~~~P~~v~~~v~~l~~~l~---~~i~ig~H~HnnlGla~ANslaAi~aGa~ 215 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYI----VDSAGAMLPDDVRDRVRALKAVLK---PETQVGFHAHHNLSLAVANSIAAIEAGAT 215 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEE----ccCCCCCCHHHHHHHHHHHHHhCC---CCceEEEEeCCCCchHHHHHHHHHHhCCC
Confidence 555554432 566654 234465566677777888877653 235666555444 3477788899999
Q ss_pred EE
Q 029661 159 AL 160 (190)
Q Consensus 159 ~~ 160 (190)
.+
T Consensus 216 ~i 217 (333)
T TIGR03217 216 RI 217 (333)
T ss_pred EE
Confidence 74
No 309
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.50 E-value=0.024 Score=45.56 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=82.2
Q ss_pred HHHhccC-CCCcEEEEEeec--ChHHHHHHHHHcCCCEEEEcccCCC--------------cchHHHHHHHHHHhCCcEE
Q 029661 16 VDALRPV-TDLPLDVHLMIV--EPEQRVPDFIKAGADIVSVHCEQSS--------------TIHLHRTLNQIKDLGAKAG 78 (190)
Q Consensus 16 v~~i~~~-~~~~i~~hlmv~--dp~~~i~~~~~~Gad~v~vh~e~~~--------------~~~~~~~i~~i~~~g~~~g 78 (190)
++.+++. ++..+.++.... +....++.+.++|++.+.+.....+ .+.+.+.++.+|++|.++.
T Consensus 46 v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~ 125 (237)
T PF00682_consen 46 VRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA 125 (237)
T ss_dssp HHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 4444432 445666544432 1223356667799999998765421 2356788999999999997
Q ss_pred EEEcC--CCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcc
Q 029661 79 VVLNP--ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK 147 (190)
Q Consensus 79 ~~i~p--~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e 147 (190)
+.+.. .++.+.+.++... +|.|.+ +.+.|...+..+.+.++.+++..++ .+|.+ |-|.-..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~v~~lv~~~~~~~~~----~~l~~H~Hnd~Gla~A 197 (237)
T PF00682_consen 126 FGCEDASRTDPEELLELAEALAEAGADIIYL----ADTVGIMTPEDVAELVRALREALPD----IPLGFHAHNDLGLAVA 197 (237)
T ss_dssp EEETTTGGSSHHHHHHHHHHHHHHT-SEEEE----EETTS-S-HHHHHHHHHHHHHHSTT----SEEEEEEBBTTS-HHH
T ss_pred eCccccccccHHHHHHHHHHHHHcCCeEEEe----eCccCCcCHHHHHHHHHHHHHhccC----CeEEEEecCCccchhH
Confidence 76543 3455555555432 576654 2333444455566777888877653 44554 4555556
Q ss_pred cHHHHHHcCCCEEE
Q 029661 148 NAYKVIEAGANALV 161 (190)
Q Consensus 148 ~~~~~~~aGad~~V 161 (190)
|.-..+++|||.+=
T Consensus 198 n~laA~~aGa~~id 211 (237)
T PF00682_consen 198 NALAALEAGADRID 211 (237)
T ss_dssp HHHHHHHTT-SEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 77788999999963
No 310
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=96.47 E-value=0.048 Score=46.84 Aligned_cols=145 Identities=16% Similarity=0.115 Sum_probs=87.6
Q ss_pred cCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHH
Q 029661 6 VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIK 71 (190)
Q Consensus 6 vpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~ 71 (190)
+|.+.--.+.++.+++..+..+-+ .+.| .+-++.+.++|++.|.+-.-+. ..+.+.+.++.+|
T Consensus 96 vPqmad~~ev~~~i~~~~~~~~~~--l~~n-~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak 172 (347)
T PLN02746 96 VPQLADAKDVMAAVRNLEGARFPV--LTPN-LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAK 172 (347)
T ss_pred ccccccHHHHHHHHHhccCCceeE--EcCC-HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 455543346677887654433322 1223 3357889999999988752210 0223457888899
Q ss_pred HhCCcEEEEEc-----C---CCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 72 DLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 72 ~~g~~~g~~i~-----p---~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
++|.++...++ | .++.+.+.++... +|.|.+ +.+.|...+.++.+.++.+++..+. .+|
T Consensus 173 ~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l----~DT~G~a~P~~v~~lv~~l~~~~~~----~~i 244 (347)
T PLN02746 173 KHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISL----GDTIGVGTPGTVVPMLEAVMAVVPV----DKL 244 (347)
T ss_pred HcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEe----cCCcCCcCHHHHHHHHHHHHHhCCC----CeE
Confidence 99999864442 2 2455555554432 676654 3445655566677777777765432 234
Q ss_pred E----EeCCCCcccHHHHHHcCCCEEE
Q 029661 139 E----VDGGVGPKNAYKVIEAGANALV 161 (190)
Q Consensus 139 ~----vdGGI~~e~~~~~~~aGad~~V 161 (190)
. =|-|....|.-..+++||+.|=
T Consensus 245 ~~H~Hnd~GlA~AN~lAA~~aGa~~vd 271 (347)
T PLN02746 245 AVHFHDTYGQALANILVSLQMGISTVD 271 (347)
T ss_pred EEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 4 3567776788788999999763
No 311
>PRK05826 pyruvate kinase; Provisional
Probab=96.45 E-value=0.1 Score=46.62 Aligned_cols=140 Identities=14% Similarity=0.197 Sum_probs=87.5
Q ss_pred HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCCCccc-
Q 029661 39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFGGQSF- 114 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~gq~~- 114 (190)
.++.+.+.|+|+|.+..-. +.+++.++.+.+.+.|. .+.+...-+|+ ++.+++++..+|.|++-.-+-| ...
T Consensus 178 ~i~~ald~g~d~I~~sfV~-saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg---~elg 253 (465)
T PRK05826 178 DIKFAAEQGVDYIAVSFVR-SAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLG---VEIP 253 (465)
T ss_pred HHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhh---hhcC
Confidence 5677899999999998554 35678888888888776 66665444444 6788888888999886222211 111
Q ss_pred chhhHHHHHHHHHHHhhcCCCCeEEEeC--------CCCc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 115 IESQVKKISDLRRMCLEKGVNPWIEVDG--------GVGP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 115 ~~~~~~ki~~~~~~~~~~~~~~~i~vdG--------GI~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
.+....-.+++.+.+.+.+. ++.+.- ...| ..+..++..|+|.+.+..-=-....|.++++.+++
T Consensus 254 ~~~v~~~qk~Ii~~c~~~gK--pvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~ 331 (465)
T PRK05826 254 DEEVPGLQKKIIRKAREAGK--PVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMAR 331 (465)
T ss_pred cHhHHHHHHHHHHHHHHcCC--CEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHH
Confidence 23334444454555544432 333331 1111 14555666799999987443334688999988877
Q ss_pred hhc
Q 029661 182 SKR 184 (190)
Q Consensus 182 ~~~ 184 (190)
.+.
T Consensus 332 I~~ 334 (465)
T PRK05826 332 ICK 334 (465)
T ss_pred HHH
Confidence 554
No 312
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.44 E-value=0.049 Score=46.41 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH----hCCcEEEEEcCC-CCHHHHHHhhcc---cceEEEEeeecCC
Q 029661 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD----LGAKAGVVLNPA-TSLSAIECVLDV---VDLVLIMSVNPGF 109 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~----~g~~~g~~i~p~-t~~~~~~~~~~~---~d~i~~m~v~pG~ 109 (190)
+....+++.|. .-.+|-.. ++++..+++++ .+..+.+++... ...++++.+++. +|+|.+=+.| |
T Consensus 60 ~mA~~la~~g~-~~~iHk~~----~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah-G- 132 (343)
T TIGR01305 60 EMAAALSQHSI-FTAIHKHY----SVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN-G- 132 (343)
T ss_pred HHHHHHHHCCC-eEEEeeCC----CHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC-C-
Confidence 45556677662 33445432 13344444433 344444555433 235677777764 7888763333 2
Q ss_pred CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC-CcccHHHHHHcCCCEEEEc
Q 029661 110 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAG 163 (190)
Q Consensus 110 ~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-~~e~~~~~~~aGad~~VvG 163 (190)
.....++.|+++|+..+. . ..+.|.| +++.+..++++|||++.||
T Consensus 133 ----hs~~~i~~ik~ir~~~p~----~-~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 133 ----YSEHFVEFVKLVREAFPE----H-TIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred ----cHHHHHHHHHHHHhhCCC----C-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 234678888888887643 2 4466645 5899999999999999988
No 313
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.015 Score=49.18 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=84.8
Q ss_pred HHHHHHHHcC-CCEEEEcccCC----------CcchHHHHHHHHHHhCCcE-EEEEcCCCCHHHHHHhhc---c--cceE
Q 029661 38 QRVPDFIKAG-ADIVSVHCEQS----------STIHLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVLD---V--VDLV 100 (190)
Q Consensus 38 ~~i~~~~~~G-ad~v~vh~e~~----------~~~~~~~~i~~i~~~g~~~-g~~i~p~t~~~~~~~~~~---~--~d~i 100 (190)
+|...+.+++ ||++.+-..+. ..+.+..+++++|+.-..+ .+=+.| ..+.+.++.+ . +|-|
T Consensus 113 d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl 190 (310)
T COG0167 113 DYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP--NITDIDEIAKAAEEAGADGL 190 (310)
T ss_pred HHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC--CHHHHHHHHHHHHHcCCcEE
Confidence 4566677888 89999954431 1235677888888865554 445888 3333333332 1 4655
Q ss_pred EEEe-e------------------ecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 101 LIMS-V------------------NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 101 ~~m~-v------------------~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
.+-- + +-|.+|....|..++-++++++..+ .+++|.--|||. .+++.+.+.+||+.+
T Consensus 191 ~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~---~~ipIIGvGGI~s~~DA~E~i~aGA~~v 267 (310)
T COG0167 191 IAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLG---GDIPIIGVGGIETGEDALEFILAGASAV 267 (310)
T ss_pred EEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcC---CCCcEEEecCcCcHHHHHHHHHcCCchh
Confidence 4211 0 1244566666777777777776653 358898999999 688999999999999
Q ss_pred EEcccccCC
Q 029661 161 VAGSAVFGA 169 (190)
Q Consensus 161 VvGsaI~~~ 169 (190)
=+||+++..
T Consensus 268 Qv~Tal~~~ 276 (310)
T COG0167 268 QVGTALIYK 276 (310)
T ss_pred eeeeeeeee
Confidence 999998764
No 314
>PLN02389 biotin synthase
Probab=96.41 E-value=0.46 Score=41.36 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCCEEEEcccCC-----------CcchHHHHHHHHHHhCCcE--EEEEcCCCCHHHHHH---hh---c-c
Q 029661 37 EQRVPDFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIEC---VL---D-V 96 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~g~~~--g~~i~p~t~~~~~~~---~~---~-~ 96 (190)
.+.++.+.++|+|.+..-.|+. +.++.-+.++.+++.|+++ |+.+......+.... .+ . .
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~ 257 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEH 257 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccC
Confidence 4567889999999988866631 0112346888889999998 555555443332111 11 1 2
Q ss_pred cceEEEEeee--cCCC--Cc-ccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCC---CcccHHHHHHcCCCEEEEccc-c
Q 029661 97 VDLVLIMSVN--PGFG--GQ-SFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGV---GPKNAYKVIEAGANALVAGSA-V 166 (190)
Q Consensus 97 ~d~i~~m~v~--pG~~--gq-~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI---~~e~~~~~~~aGad~~VvGsa-I 166 (190)
+|.|-+.... ||+. .. ... .+.++.+.-.|-++++. .+-+.||= ..+.-.....+|||.+.+|-+ +
T Consensus 258 ~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~----~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~L 333 (379)
T PLN02389 258 PESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKA----MVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLL 333 (379)
T ss_pred CcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCc----cccccccccccChhHHHHHHHhCCCEEEECCccc
Confidence 4655544333 4642 11 112 24466666667666543 23345663 344457788999999999998 8
Q ss_pred cCC-CCHHHHHHHHHH
Q 029661 167 FGA-KDYAEAIKGIKT 181 (190)
Q Consensus 167 ~~~-~dp~~~~~~l~~ 181 (190)
+.. .++.+-.+-+++
T Consensus 334 tt~g~~~~~d~~~~~~ 349 (379)
T PLN02389 334 TTPNNDFDADQAMFKE 349 (379)
T ss_pred CCCCCChHHHHHHHHH
Confidence 754 566665555554
No 315
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.39 E-value=0.2 Score=41.82 Aligned_cols=146 Identities=12% Similarity=0.174 Sum_probs=96.7
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE-----
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL----- 81 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i----- 81 (190)
.++.+.+..++|+-+||==..-.+.+..+.++|.+.|-+=....+. ++ -.++++.++..|+.+ |-.=
T Consensus 63 ~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~ 142 (282)
T TIGR01858 63 LCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDD 142 (282)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCC
Confidence 4445555567899999854444567889999999999885443221 22 356778888888655 2220
Q ss_pred -------cCCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccch-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC--cc
Q 029661 82 -------NPATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG--PK 147 (190)
Q Consensus 82 -------~p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e 147 (190)
..-|..+..+++.+. +|.+.+ -++| |.. +..| -.+++|+++++.. ++++..=||-+ .+
T Consensus 143 ~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~H-G~y--k~~p~Ldf~~L~~I~~~~-----~iPLVlHGgSG~~~e 214 (282)
T TIGR01858 143 LSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAH-GLY--KKTPKLDFDRLAEIREVV-----DVPLVLHGASDVPDE 214 (282)
T ss_pred CccccchhccCCHHHHHHHHHHHCcCEEecccCccc-cCc--CCCCccCHHHHHHHHHHh-----CCCeEEecCCCCCHH
Confidence 113566777777753 787643 2333 211 1222 3377788887765 36888888766 58
Q ss_pred cHHHHHHcCCCEEEEcccccC
Q 029661 148 NAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 148 ~~~~~~~aGad~~VvGsaI~~ 168 (190)
+++++++.|..-+=++|.+..
T Consensus 215 ~~~~ai~~Gi~KiNi~T~l~~ 235 (282)
T TIGR01858 215 DVRRTIELGICKVNVATELKI 235 (282)
T ss_pred HHHHHHHcCCeEEEeCcHHHH
Confidence 999999999999999998864
No 316
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.38 E-value=0.082 Score=45.09 Aligned_cols=125 Identities=15% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCCcEEEEEeecC-hHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh----CCcEEEEEcCC-CCHHHHHHhhc-
Q 029661 23 TDLPLDVHLMIVE-PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL----GAKAGVVLNPA-TSLSAIECVLD- 95 (190)
Q Consensus 23 ~~~~i~~hlmv~d-p~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~----g~~~g~~i~p~-t~~~~~~~~~~- 95 (190)
+++|+..-=|-.= -.+....+++.|. .-.+|-.. ++++..+++++. +..+.+++... ...++++++++
T Consensus 45 ~giPii~AnMdTV~~~~mA~~la~~g~-~~~iHk~~----~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~ 119 (346)
T PRK05096 45 SGVPIIAANMDTVGTFEMAKALASFDI-LTAVHKHY----SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILAL 119 (346)
T ss_pred cCCceEecCCCccccHHHHHHHHHCCC-eEEEecCC----CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhc
Confidence 4566655333221 1344556777763 34445432 244444444442 33444454433 23567777776
Q ss_pred --ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEc
Q 029661 96 --VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 163 (190)
Q Consensus 96 --~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvG 163 (190)
.+|+|.+=+.| | .....++.|+++|+..++ ..| +.|.+- ++.+..++++|||++-||
T Consensus 120 ~~g~D~iviD~Ah-G-----hs~~~i~~ik~ik~~~P~----~~v-IaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 120 SPALNFICIDVAN-G-----YSEHFVQFVAKAREAWPD----KTI-CAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCCCCEEEEECCC-C-----cHHHHHHHHHHHHHhCCC----CcE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 48988763333 2 334678888888887653 455 667665 899999999999999866
No 317
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.37 E-value=0.11 Score=43.43 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=86.3
Q ss_pred HHHHHHhccCCCCcEEEEEeec--ChHH---HHHHHHHcCCCEEEEcccC-------------CCcchHHHHHHHHHHhC
Q 029661 13 PLVVDALRPVTDLPLDVHLMIV--EPEQ---RVPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDLG 74 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~--dp~~---~i~~~~~~Gad~v~vh~e~-------------~~~~~~~~~i~~i~~~g 74 (190)
...++.|...+++|+.+|.=+- +|.. .++.+.++|+.++++---. .+.++..+-|+++++.-
T Consensus 62 ~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~ 141 (285)
T TIGR02317 62 AEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAK 141 (285)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhc
Confidence 4556667777889999998883 5654 4888999999998883210 01223344455555533
Q ss_pred CcEEEEEcCCCC----------HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE---EE
Q 029661 75 AKAGVVLNPATS----------LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI---EV 140 (190)
Q Consensus 75 ~~~g~~i~p~t~----------~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i---~v 140 (190)
...-+.|+--|+ +++.+.|.+ .+|.|.+ ||. ...+.++++.+.++ .++ .+
T Consensus 142 ~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi----~g~-------~~~e~i~~~~~~i~-----~Pl~~n~~ 205 (285)
T TIGR02317 142 RDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFP----EAL-------TSLEEFRQFAKAVK-----VPLLANMT 205 (285)
T ss_pred cCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEe----CCC-------CCHHHHHHHHHhcC-----CCEEEEec
Confidence 233344443333 345555555 4888865 342 12444555555442 233 24
Q ss_pred eCCCCc-ccHHHHHHcCCCEEEEcccccCC
Q 029661 141 DGGVGP-KNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 141 dGGI~~-e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.||-++ -+++++.+.|++.++.|...+.+
T Consensus 206 ~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 206 EFGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred cCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 466665 48999999999999999887764
No 318
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.36 E-value=0.15 Score=42.70 Aligned_cols=147 Identities=12% Similarity=0.174 Sum_probs=97.3
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE-----
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL----- 81 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i----- 81 (190)
.++.+.+..++|+-+||==....+.+..+.++|.+.|-+=....+. ++ -.++++.++.+|+.+ |-.=
T Consensus 65 ~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~ 144 (286)
T PRK12738 65 LCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDD 144 (286)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCC
Confidence 3444555568999999955545567888999999999885443221 22 356778888877655 2220
Q ss_pred ---c----CCCCHHHHHHhhc--ccceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--ccc
Q 029661 82 ---N----PATSLSAIECVLD--VVDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKN 148 (190)
Q Consensus 82 ---~----p~t~~~~~~~~~~--~~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~ 148 (190)
. .-|..+..+++.+ .+|.+.+ -++| |...+ -..--+++++++++.. ++++..=||-. .+.
T Consensus 145 ~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~H-G~Y~~-~p~Ldfd~l~~I~~~~-----~vPLVLHGgSG~~~e~ 217 (286)
T PRK12738 145 MSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAH-GLYSK-TPKIDFQRLAEIREVV-----DVPLVLHGASDVPDEF 217 (286)
T ss_pred cccccchhcCCCHHHHHHHHHHhCCCEEEeccCccc-CCCCC-CCcCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHH
Confidence 1 1356677777775 3787643 2333 22111 1223378888888765 36888888766 589
Q ss_pred HHHHHHcCCCEEEEcccccC
Q 029661 149 AYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsaI~~ 168 (190)
++++++.|..-+=++|.+..
T Consensus 218 ~~kai~~GI~KiNi~T~l~~ 237 (286)
T PRK12738 218 VRRTIELGVTKVNVATELKI 237 (286)
T ss_pred HHHHHHcCCeEEEeCcHHHH
Confidence 99999999999999998864
No 319
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.36 E-value=0.036 Score=48.21 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC----CCHHHHHHh----hc-ccceEEEEeeec
Q 029661 37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA----TSLSAIECV----LD-VVDLVLIMSVNP 107 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~----t~~~~~~~~----~~-~~d~i~~m~v~p 107 (190)
+.|++.+.+.|.|.+-+-.--.+..+++..++++|++|..+..+++-. +.++.+.++ ++ .+|.|.+=
T Consensus 101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciK---- 176 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIK---- 176 (472)
T ss_pred HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEee----
Confidence 568888999999988775322235688999999999999997766533 334433332 22 26777541
Q ss_pred CCCCcccchhhHHHHHHHHHHHhhcCCCCeEE----EeCCCCcccHHHHHHcCCCEE
Q 029661 108 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIE----VDGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 108 G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~----vdGGI~~e~~~~~~~aGad~~ 160 (190)
.-+|-.-.....+.++.+|+.++ +++. ..-|++.-+.-..++||||++
T Consensus 177 DmaGlltP~~ayelVk~iK~~~~-----~pv~lHtH~TsG~a~m~ylkAvEAGvD~i 228 (472)
T COG5016 177 DMAGLLTPYEAYELVKAIKKELP-----VPVELHTHATSGMAEMTYLKAVEAGVDGI 228 (472)
T ss_pred cccccCChHHHHHHHHHHHHhcC-----CeeEEecccccchHHHHHHHHHHhCcchh
Confidence 22343334566888888888764 3444 567888777778899999987
No 320
>PLN02535 glycolate oxidase
Probab=96.35 E-value=0.049 Score=47.05 Aligned_cols=150 Identities=12% Similarity=0.183 Sum_probs=85.7
Q ss_pred CHHHHHHhccCCCCcEEEEEeec-Ch---HHHHHHHHHcCCCEEEEcccCC---------------C-cchH--------
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIV-EP---EQRVPDFIKAGADIVSVHCEQS---------------S-TIHL-------- 63 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~-dp---~~~i~~~~~~Gad~v~vh~e~~---------------~-~~~~-------- 63 (190)
+...++++.+.++-+.-..|.+. |. ...++.+.++|+..+.+-.+.. + ..+.
T Consensus 111 s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~ 190 (364)
T PLN02535 111 ASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEV 190 (364)
T ss_pred ccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCC
Confidence 33455666655455666666763 43 4578888999998887743320 0 0000
Q ss_pred ---------------------HHHHHHHHHh-CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHH
Q 029661 64 ---------------------HRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVK 120 (190)
Q Consensus 64 ---------------------~~~i~~i~~~-g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ 120 (190)
.+.++.+|+. +..+.+ .--.+.+..+...+ .+|.|.+-. + |.....+.+.+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~Pviv--KgV~~~~dA~~a~~~GvD~I~vsn-~-GGr~~d~~~~t~~ 266 (364)
T PLN02535 191 VSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILI--KGVLTREDAIKAVEVGVAGIIVSN-H-GARQLDYSPATIS 266 (364)
T ss_pred CccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEE--ecCCCHHHHHHHHhcCCCEEEEeC-C-CcCCCCCChHHHH
Confidence 1234444443 222222 11123333444433 378776521 2 2111123455677
Q ss_pred HHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccC
Q 029661 121 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 121 ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
-+.++++... .+++|.+||||+ ..++.+....|||.+.+|++.+.
T Consensus 267 ~L~ev~~av~---~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 267 VLEEVVQAVG---GRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred HHHHHHHHHh---cCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 7777766543 247899999999 57888999999999999998653
No 321
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.35 E-value=0.039 Score=47.64 Aligned_cols=109 Identities=19% Similarity=0.297 Sum_probs=66.5
Q ss_pred HHHHHHHhCCcEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecCCCCcccc--hhhHHHHHHHHHHHhhcCCCCeEEEeC
Q 029661 66 TLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMCLEKGVNPWIEVDG 142 (190)
Q Consensus 66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~--~~~~~ki~~~~~~~~~~~~~~~i~vdG 142 (190)
.++.+|+.=..+.+.=. -...+..+..++. +|.|.+ +-+ +|..+. +.+++.+.++++.. +.+|.+||
T Consensus 227 ~i~~ir~~~~~pviiKg-V~~~eda~~a~~~G~d~I~V-Snh---GGrqld~~~~~~~~L~ei~~~~-----~~~vi~dG 296 (361)
T cd04736 227 DLRWLRDLWPHKLLVKG-IVTAEDAKRCIELGADGVIL-SNH---GGRQLDDAIAPIEALAEIVAAT-----YKPVLIDS 296 (361)
T ss_pred HHHHHHHhCCCCEEEec-CCCHHHHHHHHHCCcCEEEE-CCC---CcCCCcCCccHHHHHHHHHHHh-----CCeEEEeC
Confidence 56667664222222222 2445555555543 888765 222 333333 44567777776643 26799999
Q ss_pred CCC-cccHHHHHHcCCCEEEEcccccC---C---CCHHHHHHHHHHhhc
Q 029661 143 GVG-PKNAYKVIEAGANALVAGSAVFG---A---KDYAEAIKGIKTSKR 184 (190)
Q Consensus 143 GI~-~e~~~~~~~aGad~~VvGsaI~~---~---~dp~~~~~~l~~~~~ 184 (190)
||+ ..++.+....|||.+.+|+++.. + +.....++.|++.++
T Consensus 297 GIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~ 345 (361)
T cd04736 297 GIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEID 345 (361)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999 57888889999999999998662 1 234455555555443
No 322
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.34 E-value=0.19 Score=41.80 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=95.7
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEc----
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLN---- 82 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~---- 82 (190)
.++.+.+...+|+-+||==....+.+..+.++|.+.|-+=....+. ++ -.++++.++..|+.+ |-.-.
T Consensus 60 ~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~ 139 (276)
T cd00947 60 MVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDG 139 (276)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCC
Confidence 4444444467899999855433456778899999999886543221 22 356777788887665 32211
Q ss_pred ------CCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--cccHH
Q 029661 83 ------PATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAY 150 (190)
Q Consensus 83 ------p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~~ 150 (190)
.-|..+..+++.+. +|.+.+ -++| |.....-..--+++++++++.. ++++..=||-. .+.++
T Consensus 140 ~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~H-G~Y~~~~p~L~~~~L~~i~~~~-----~vPLVlHGgSG~~~e~~~ 213 (276)
T cd00947 140 VVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSH-GAYKGGEPKLDFDRLKEIAERV-----NVPLVLHGGSGIPDEQIR 213 (276)
T ss_pred cccccccCCCHHHHHHHHHHHCCCEEEeccCccc-cccCCCCCccCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHH
Confidence 12556777777764 787642 2333 2111101223477788888776 36788888766 58899
Q ss_pred HHHHcCCCEEEEcccccC
Q 029661 151 KVIEAGANALVAGSAVFG 168 (190)
Q Consensus 151 ~~~~aGad~~VvGsaI~~ 168 (190)
++++.|+.-+=++|.+..
T Consensus 214 ~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 214 KAIKLGVCKININTDLRL 231 (276)
T ss_pred HHHHcCCeEEEeChHHHH
Confidence 999999999999998764
No 323
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=96.34 E-value=0.062 Score=46.09 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=58.5
Q ss_pred HHHHHHHHHHh---CCcEEEEEcCC-CCHHHHHHhhc----ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcC-
Q 029661 63 LHRTLNQIKDL---GAKAGVVLNPA-TSLSAIECVLD----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG- 133 (190)
Q Consensus 63 ~~~~i~~i~~~---g~~~g~~i~p~-t~~~~~~~~~~----~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~- 133 (190)
..+.++.+++. ..++.+-+... +.++...+..+ .+|.|.+=+..|.. | -.++. ++++|+.+++.+
T Consensus 186 ~~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~~-g--~l~~~---v~~vr~~ld~~g~ 259 (343)
T PRK08662 186 QVEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSRR-G--NFRKI---VREVRWTLDIRGY 259 (343)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCCC-c--cHHHH---HHHHHHHHHhcCC
Confidence 45567777764 23444444432 34433333322 36776652221100 1 11223 334444444443
Q ss_pred CCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 134 VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 134 ~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.+..|++.||||++|+.++.+. +|++-+||.++++
T Consensus 260 ~~v~IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 260 EHVKIFVSGGLDPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred CCeEEEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence 3478999999999999999999 9999999999874
No 324
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.33 E-value=0.066 Score=46.88 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=53.1
Q ss_pred CcEEEEEcCCCC-HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHH
Q 029661 75 AKAGVVLNPATS-LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 152 (190)
Q Consensus 75 ~~~g~~i~p~t~-~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~ 152 (190)
..+|.++.+... .++++.+++ .+|+|.+=+.+ |. .....+.++++|+.++ +..+.+.+-.|.+....+
T Consensus 142 l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~----g~--~~~~~~~v~~ik~~~p----~~~vi~g~V~T~e~a~~l 211 (404)
T PRK06843 142 LRVGAAVSIDIDTIERVEELVKAHVDILVIDSAH----GH--STRIIELVKKIKTKYP----NLDLIAGNIVTKEAALDL 211 (404)
T ss_pred eEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCC----CC--ChhHHHHHHHHHhhCC----CCcEEEEecCCHHHHHHH
Confidence 346677765322 356666665 48998764443 21 2345666777777654 345655666668999999
Q ss_pred HHcCCCEEEEc
Q 029661 153 IEAGANALVAG 163 (190)
Q Consensus 153 ~~aGad~~VvG 163 (190)
.++|||++.+|
T Consensus 212 ~~aGaD~I~vG 222 (404)
T PRK06843 212 ISVGADCLKVG 222 (404)
T ss_pred HHcCCCEEEEC
Confidence 99999999988
No 325
>PRK15452 putative protease; Provisional
Probab=96.33 E-value=0.035 Score=49.22 Aligned_cols=116 Identities=17% Similarity=0.100 Sum_probs=74.2
Q ss_pred eecChHHHHHHHHHcCCCEEEEcccCC---------CcchHHHHHHHHHHhCCcEEEEEcCCCCH---HHHHHhhcc---
Q 029661 32 MIVEPEQRVPDFIKAGADIVSVHCEQS---------STIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIECVLDV--- 96 (190)
Q Consensus 32 mv~dp~~~i~~~~~~Gad~v~vh~e~~---------~~~~~~~~i~~i~~~g~~~g~~i~p~t~~---~~~~~~~~~--- 96 (190)
.+.+++ -++.+.++|||.|.+..+.. +.+++.+.++.++++|+++.+++|.-..- +.+.++++.
T Consensus 9 pag~~e-~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 9 PAGTLK-NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred ECCCHH-HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence 344544 35578899999999954311 23568889999999999999998844333 333333332
Q ss_pred --cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc---ccHHHHHHcCCCEEEEcccc
Q 029661 97 --VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP---KNAYKVIEAGANALVAGSAV 166 (190)
Q Consensus 97 --~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~---e~~~~~~~aGad~~VvGsaI 166 (190)
+|-|++ .+| .-+..+++.. ++.++.+|-..|. ..+.-+.+.|++-+++.+-+
T Consensus 88 ~gvDgvIV--~d~------------G~l~~~ke~~----p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 88 MKPDALIM--SDP------------GLIMMVREHF----PEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred CCCCEEEE--cCH------------HHHHHHHHhC----CCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 344443 112 2234444432 3467778887764 45666788999999988766
No 326
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=96.31 E-value=0.11 Score=42.86 Aligned_cols=113 Identities=22% Similarity=0.186 Sum_probs=73.7
Q ss_pred HHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc-----c
Q 029661 39 RVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----V 97 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~-----~ 97 (190)
-++.+.++|++.|.+..-.. ..+...+.++.+|++|.++.+.+. ..+|.+.+.++.+. +
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~ 155 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGV 155 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCC
Confidence 57889999999988843110 123355667888899999877653 34566666655432 5
Q ss_pred ceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661 98 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 98 d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~ 160 (190)
|.+.+ +.+.|...+..+.+.++.+++..+ .+|.+ +-|....|.-..+++|++.+
T Consensus 156 ~~i~l----~Dt~G~~~P~~v~~~~~~~~~~~~-----~~i~~H~Hn~~Gla~an~~~a~~aG~~~v 213 (262)
T cd07948 156 NRVGI----ADTVGIATPRQVYELVRTLRGVVS-----CDIEFHGHNDTGCAIANAYAALEAGATHI 213 (262)
T ss_pred CEEEE----CCcCCCCCHHHHHHHHHHHHHhcC-----CeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 65543 445566666667777777776542 44554 45666667778889999964
No 327
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.30 E-value=0.078 Score=45.04 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=72.8
Q ss_pred CCcEEEEEeecChH-HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC-HHHHHHhhcc---cc
Q 029661 24 DLPLDVHLMIVEPE-QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-LSAIECVLDV---VD 98 (190)
Q Consensus 24 ~~~i~~hlmv~dp~-~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-~~~~~~~~~~---~d 98 (190)
+.||.+-=|..... +....+.+.|.-.+. |-. +.++..+.++..+..+..+++++..... .+++.++.+. +|
T Consensus 34 ~~P~~inAM~t~in~~LA~~a~~~G~~~i~-hK~--~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d 110 (321)
T TIGR01306 34 KLPVVPANMQTIIDEKLAEQLAENGYFYIM-HRF--DEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPE 110 (321)
T ss_pred cCcEEeeccchhhhHHHHHHHHHcCCEEEE-ecC--CHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCC
Confidence 34555555544332 345567777744443 332 2344444444444445544444443222 3556666553 47
Q ss_pred eEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEc
Q 029661 99 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 163 (190)
Q Consensus 99 ~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvG 163 (190)
+|.+ ++.- | -....++.|+++|+..+ .+..+.|++. .+.++.+.++|||.+.+|
T Consensus 111 ~i~~---D~ah-g--~s~~~~~~i~~i~~~~p-----~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 111 YITI---DIAH-G--HSNSVINMIKHIKTHLP-----DSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred EEEE---eCcc-C--chHHHHHHHHHHHHhCC-----CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 7754 4321 2 23457888888888653 2455777666 799999999999999887
No 328
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=96.30 E-value=0.16 Score=41.76 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHH--------------------------HhCCc
Q 029661 23 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK--------------------------DLGAK 76 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~--------------------------~~g~~ 76 (190)
.+..-.+.+-..+|. ++..+.++|+++|.++.-. +.++..++++.+| ..+-.
T Consensus 68 ~g~~~lVRvp~~~~~-~i~r~LD~Ga~giivP~v~-tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~ 145 (256)
T PRK10558 68 SASAPVVRVPTNEPV-IIKRLLDIGFYNFLIPFVE-TAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKN 145 (256)
T ss_pred cCCCcEEECCCCCHH-HHHHHhCCCCCeeeecCcC-CHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccc
Confidence 445555544334443 6788999999999997443 2455555544332 22223
Q ss_pred EEEEEcCCCC--HHHHHHhhc--ccceEEEEe----eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc
Q 029661 77 AGVVLNPATS--LSAIECVLD--VVDLVLIMS----VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 148 (190)
Q Consensus 77 ~g~~i~p~t~--~~~~~~~~~--~~d~i~~m~----v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~ 148 (190)
+.+...-+|+ ++.+++++. .+|.+.+-+ ..-|..++...++....+.++..-..++|.. ..+ ..-+++.
T Consensus 146 ~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~--~g~-~~~~~~~ 222 (256)
T PRK10558 146 ITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKP--SGI-LAPVEAD 222 (256)
T ss_pred cEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCc--eEE-cCCCHHH
Confidence 3333333455 566777764 367776632 2234444444566666677766666665533 222 3445788
Q ss_pred HHHHHHcCCCEEEEccc
Q 029661 149 AYKVIEAGANALVAGSA 165 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsa 165 (190)
.+.+++.|++.+++|+-
T Consensus 223 ~~~~~~~G~~~v~~~~D 239 (256)
T PRK10558 223 ARRYLEWGATFVAVGSD 239 (256)
T ss_pred HHHHHHcCCCEEEEchH
Confidence 99999999999999964
No 329
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=96.30 E-value=0.13 Score=45.57 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=86.0
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHh
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV 93 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~ 93 (190)
+.|+.+++.++.|+.++ +.||+ .++.+.++|+|..-.-... ..++..+..+.++++|..+.+ ..++ ++.+++.
T Consensus 145 ~~Vk~V~~~~dvPLSID--T~dpe-vleaAleagad~~plI~Sa-t~dN~~~m~~la~~yg~pvVv-~~~d--l~~L~~l 217 (450)
T PRK04165 145 KAVKKVAETTDLPLILC--SEDPA-VLKAALEVVADRKPLLYAA-TKENYEEMAELAKEYNCPLVV-KAPN--LEELKEL 217 (450)
T ss_pred HHHHHHHHhcCCCEEEe--CCCHH-HHHHHHHhcCCCCceEEec-CcchHHHHHHHHHHcCCcEEE-Echh--HHHHHHH
Confidence 45666666568888774 57777 4567788888843333222 135678888989999988766 3332 5555554
Q ss_pred hcc------cceEEEEeeecCCCCcccchhhHHHHHHHHHH---HhhcCCCCeEEEeCC------CCcc--cHHHHHHcC
Q 029661 94 LDV------VDLVLIMSVNPGFGGQSFIESQVKKISDLRRM---CLEKGVNPWIEVDGG------VGPK--NAYKVIEAG 156 (190)
Q Consensus 94 ~~~------~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~---~~~~~~~~~i~vdGG------I~~e--~~~~~~~aG 156 (190)
.+. .|.| .+||++| |. .+++...++|+. -..+.+.+++-+.-+ +-.| ++.-++..|
T Consensus 218 v~~~~~~GI~dII----LDPg~gg--f~-ksl~~~~~iRr~Al~~~~~~lgyPil~~~s~k~~~~~~~E~~~As~~~~ky 290 (450)
T PRK04165 218 VEKLQAAGIKDLV----LDPGTEN--IK-ETLDDFVQIRRAAIKKGDRPLGYPIIAFPIEAWMSDPMKEAAIASTLIAKY 290 (450)
T ss_pred HHHHHHcCCCcEE----ECCCCch--hh-hhHHHHHHHHhhhhhcccccCCCCEEEcchhhcccchHHHHHHHHHHHHhC
Confidence 432 2444 3898865 32 334555666665 222335566644322 1112 455677889
Q ss_pred CCEEEEcccccCCCCHHHHHHH
Q 029661 157 ANALVAGSAVFGAKDYAEAIKG 178 (190)
Q Consensus 157 ad~~VvGsaI~~~~dp~~~~~~ 178 (190)
||++|+-+ -+|.+.+-.
T Consensus 291 a~i~Vl~~-----~~~~~~~p~ 307 (450)
T PRK04165 291 ADILVLHD-----IEPWELLPL 307 (450)
T ss_pred CcEEEEcC-----CCHHHHhhH
Confidence 99998764 455555443
No 330
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=96.29 E-value=0.047 Score=49.90 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=87.3
Q ss_pred HHHHHcCCCEEEEcccCCCcchHHHHHHHHHH-------------hCCcEEEEEcCCCCHHHHHHhhcccceEEEEe---
Q 029661 41 PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-------------LGAKAGVVLNPATSLSAIECVLDVVDLVLIMS--- 104 (190)
Q Consensus 41 ~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~-------------~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~--- 104 (190)
..+.+.|+..|.|+.-. +.+++.++.+.++. ....+|+.+....-+..+.++++.+|.+.+-+
T Consensus 377 ~ra~~~G~~~Im~PmV~-t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~vDf~sIGtnDL 455 (565)
T TIGR01417 377 LRASAYGKLRIMFPMVA-TVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEVDFFSIGTNDL 455 (565)
T ss_pred HHHHhcCCCeEEecCCC-CHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhCCEEEEChhHH
Confidence 34567899999998765 35566666665553 13557777765555677888888899987632
Q ss_pred ------ee-----cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC--CCcccHHHHHHcCCCEEEEccc
Q 029661 105 ------VN-----PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSA 165 (190)
Q Consensus 105 ------v~-----pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG--I~~e~~~~~~~aGad~~VvGsa 165 (190)
+. .|..+|.+.|..+..|+++.+-..+++ .++.+-|. -+++.++.++..|.+.+.+++.
T Consensus 456 sqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g--~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~ 527 (565)
T TIGR01417 456 TQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEG--IWVGMCGEMAGDERAIPLLLGLGLRELSMSAS 527 (565)
T ss_pred HHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcC--CeEEEeCCcCCCHHHHHHHHHCCCCEEEEChH
Confidence 22 455578888999998888887776554 56666553 4588889999999999999964
No 331
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.27 E-value=0.27 Score=41.08 Aligned_cols=147 Identities=14% Similarity=0.195 Sum_probs=96.4
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE-----
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL----- 81 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i----- 81 (190)
.++++.+..++|+-+||==..-.+++..+.++|.+.|-+=....+. ++ -.++++.++..|+.+ |-.=
T Consensus 65 ~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~ 144 (284)
T PRK09195 65 IVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDD 144 (284)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccC
Confidence 4555555578999999855444567889999999999885443221 22 356777888887554 2210
Q ss_pred ---c----CCCCHHHHHHhhc--ccceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--ccc
Q 029661 82 ---N----PATSLSAIECVLD--VVDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKN 148 (190)
Q Consensus 82 ---~----p~t~~~~~~~~~~--~~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~ 148 (190)
. .-|..+..+++.+ .+|.+.+ -++|--+.+. ..-.+++++++++.. ++++..=||-. .+.
T Consensus 145 ~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~--p~Ld~~~L~~I~~~~-----~vPLVLHGgSG~~~e~ 217 (284)
T PRK09195 145 LQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGE--PKLDFDRLENIRQWV-----NIPLVLHGASGLPTKD 217 (284)
T ss_pred cccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCC--CcCCHHHHHHHHHHh-----CCCeEEecCCCCCHHH
Confidence 0 1366677778775 4787643 2333111121 123377777777765 36788888765 589
Q ss_pred HHHHHHcCCCEEEEcccccC
Q 029661 149 AYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsaI~~ 168 (190)
++++++.|..-+=++|.+..
T Consensus 218 ~~~ai~~Gi~KiNi~T~l~~ 237 (284)
T PRK09195 218 IQQTIKLGICKVNVATELKI 237 (284)
T ss_pred HHHHHHcCCeEEEeCcHHHH
Confidence 99999999999999998863
No 332
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=96.26 E-value=0.06 Score=44.57 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=33.3
Q ss_pred CCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 134 VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 134 ~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.+..|.+.||||+++++.+.+.|+|++.+|+.+++.
T Consensus 238 ~~~~i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 238 PRVKIEASGGLDEENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence 356899999999999999999999999999999886
No 333
>PRK12999 pyruvate carboxylase; Reviewed
Probab=96.25 E-value=0.062 Score=52.95 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=90.8
Q ss_pred HHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEE
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 81 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i 81 (190)
+.++.+|+. ++.++-..+--.| | ..|++.+.++|.|++.+-......+++...++.+|+.|...-+++
T Consensus 595 erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i 674 (1146)
T PRK12999 595 ERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAI 674 (1146)
T ss_pred HHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEE
Confidence 567888875 7777766554322 2 457888999999998875332124567888999999997655555
Q ss_pred cCC----------CCHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eC
Q 029661 82 NPA----------TSLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DG 142 (190)
Q Consensus 82 ~p~----------t~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dG 142 (190)
+.. .+.+.+.++. + .+|.|.+ ....|...+..+.+.++.+|+.+ +.+|.+ +-
T Consensus 675 ~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~i----kDt~G~l~P~~~~~lv~~lk~~~-----~ipi~~H~Hnt~ 745 (1146)
T PRK12999 675 CYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAI----KDMAGLLKPAAAYELVSALKEEV-----DLPIHLHTHDTS 745 (1146)
T ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEE----CCccCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCC
Confidence 433 2344333332 2 2565543 34456666667777788888764 245554 55
Q ss_pred CCCcccHHHHHHcCCCEEEE
Q 029661 143 GVGPKNAYKVIEAGANALVA 162 (190)
Q Consensus 143 GI~~e~~~~~~~aGad~~Vv 162 (190)
|....|.-..+++|||++=+
T Consensus 746 Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 746 GNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred chHHHHHHHHHHhCCCEEEe
Confidence 66666787889999997743
No 334
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=96.23 E-value=0.15 Score=43.53 Aligned_cols=130 Identities=21% Similarity=0.289 Sum_probs=75.7
Q ss_pred HHHHcCCCEEEEcccCC--------------------Ccc----hHHHHHHHHHHh---CCcEEEEEcCCCCH------H
Q 029661 42 DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL---GAKAGVVLNPATSL------S 88 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------------------~~~----~~~~~i~~i~~~---g~~~g~~i~p~t~~------~ 88 (190)
.+.++|.|+|-+|+-.+ +.+ =+.++++++|+. ...+|+=+++.... +
T Consensus 157 ~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~ 236 (341)
T PF00724_consen 157 RAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLE 236 (341)
T ss_dssp HHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSH
T ss_pred HHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchH
Confidence 36889999999996432 111 156788888885 34478888876542 2
Q ss_pred HH---HHhhcc--cceEEEE------eeecCCC-Ccccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 89 AI---ECVLDV--VDLVLIM------SVNPGFG-GQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 89 ~~---~~~~~~--~d~i~~m------~v~pG~~-gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
.. .+.++. +|++.+. ...|... ..... ...+...+.+|+.. +.++...||++ ++.+.++++
T Consensus 237 e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-----~~pvi~~G~i~~~~~ae~~l~ 311 (341)
T PF00724_consen 237 ETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-----KIPVIGVGGIRTPEQAEKALE 311 (341)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-----SSEEEEESSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc-----CceEEEEeeecchhhhHHHHh
Confidence 22 222222 4554221 1122211 11111 12234455666654 35788999999 565777777
Q ss_pred cC-CCEEEEcccccCCCCHHHHH
Q 029661 155 AG-ANALVAGSAVFGAKDYAEAI 176 (190)
Q Consensus 155 aG-ad~~VvGsaI~~~~dp~~~~ 176 (190)
.| +|.+.+|+++...+|.-..+
T Consensus 312 ~g~~DlV~~gR~~ladPd~~~k~ 334 (341)
T PF00724_consen 312 EGKADLVAMGRPLLADPDLPNKA 334 (341)
T ss_dssp TTSTSEEEESHHHHH-TTHHHHH
T ss_pred cCCceEeeccHHHHhCchHHHHH
Confidence 66 99999999988877765443
No 335
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.21 E-value=0.3 Score=40.93 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=98.3
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcEEEEEc--------
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKAGVVLN-------- 82 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~g~~i~-------- 82 (190)
.++.+.+..++|+-+||==....+.+..+.++|.+.|-+=....+. ++ -.++++.++.+|+.+---+.
T Consensus 64 ~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~ 143 (287)
T PF01116_consen 64 MVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDG 143 (287)
T ss_dssp HHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTT
T ss_pred HHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCC
Confidence 4556666678999999965555667889999999999986543221 22 35677888888876633211
Q ss_pred --C-------CCCHHHHHHhhcc--cceEEEEeeecCCC-Cc-cc--chh-hHHHHHHHHHHHhhcCCCCeEEEeCCCC-
Q 029661 83 --P-------ATSLSAIECVLDV--VDLVLIMSVNPGFG-GQ-SF--IES-QVKKISDLRRMCLEKGVNPWIEVDGGVG- 145 (190)
Q Consensus 83 --p-------~t~~~~~~~~~~~--~d~i~~m~v~pG~~-gq-~~--~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~- 145 (190)
. -|..+..+++.+. +|.+.+ -.|.. |. +. .|. -+++++++++..+ ++++..=||-+
T Consensus 144 ~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAv---aiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~----~iPLVlHGgSG~ 216 (287)
T PF01116_consen 144 IESEEETESLYTDPEEAKEFVEETGVDALAV---AIGTAHGMYKGGKKPKLDFDRLKEIREAVP----DIPLVLHGGSGL 216 (287)
T ss_dssp CSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE----SSSBSSSBSSSSSTC--HHHHHHHHHHHH----TSEEEESSCTTS
T ss_pred ccccccccccccCHHHHHHHHHHhCCCEEEE---ecCccccccCCCCCcccCHHHHHHHHHhcC----CCCEEEECCCCC
Confidence 1 1566777777654 788643 33321 21 12 233 4888888888874 37899989877
Q ss_pred -cccHHHHHHcCCCEEEEcccccC
Q 029661 146 -PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 146 -~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
.++++++++.|..-+=+||.+..
T Consensus 217 ~~e~~~~ai~~Gi~KiNi~T~~~~ 240 (287)
T PF01116_consen 217 PDEQIRKAIKNGISKINIGTELRR 240 (287)
T ss_dssp -HHHHHHHHHTTEEEEEESHHHHH
T ss_pred CHHHHHHHHHcCceEEEEehHHHH
Confidence 58999999999999999998764
No 336
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=96.20 E-value=0.52 Score=38.20 Aligned_cols=140 Identities=21% Similarity=0.212 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCCEEEEcccCCCc------chHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHhhcc-cceEEEEeeecC
Q 029661 38 QRVPDFIKAGADIVSVHCEQSST------IHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPG 108 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~------~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~~~~-~d~i~~m~v~pG 108 (190)
++++.+.++|++.|-+-.-. +. ++..+.++.+++.+ .++.. +.++. .+.++...+. +|.|.+.. ++
T Consensus 23 ~i~~~L~~~GV~~IEvg~~~-~~~~~p~~~~~~~~i~~l~~~~~~~~~~~-l~~~~-~~~i~~a~~~g~~~i~i~~--~~ 97 (265)
T cd03174 23 EIAEALDEAGVDSIEVGSGA-SPKAVPQMEDDWEVLRAIRKLVPNVKLQA-LVRNR-EKGIERALEAGVDEVRIFD--SA 97 (265)
T ss_pred HHHHHHHHcCCCEEEeccCc-CccccccCCCHHHHHHHHHhccCCcEEEE-EccCc-hhhHHHHHhCCcCEEEEEE--ec
Confidence 46777888999999886443 23 56788999999987 44433 33221 4445554443 56665422 12
Q ss_pred CCC---c---ccchhhHHHHHHHHHHHhhcCCCCeEEE--eCC--CCcc----cHHHHHHcCCCEEEEcccccCCCCHH-
Q 029661 109 FGG---Q---SFIESQVKKISDLRRMCLEKGVNPWIEV--DGG--VGPK----NAYKVIEAGANALVAGSAVFGAKDYA- 173 (190)
Q Consensus 109 ~~g---q---~~~~~~~~ki~~~~~~~~~~~~~~~i~v--dGG--I~~e----~~~~~~~aGad~~VvGsaI~~~~dp~- 173 (190)
... . .-.+..++++.+..+...+.+..+.+.+ ..+ .+++ -++.+.++|+|.+.+--. +..-.|.
T Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~ 176 (265)
T cd03174 98 SETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEE 176 (265)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHH
Confidence 110 0 1122345666555555556665554444 344 5543 455677899999887522 2223444
Q ss_pred --HHHHHHHHhh
Q 029661 174 --EAIKGIKTSK 183 (190)
Q Consensus 174 --~~~~~l~~~~ 183 (190)
+.++.+++..
T Consensus 177 v~~li~~l~~~~ 188 (265)
T cd03174 177 VAELVKALREAL 188 (265)
T ss_pred HHHHHHHHHHhC
Confidence 4445555443
No 337
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.16 Score=43.45 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=92.7
Q ss_pred CCcEEEEEeecChHHHHHHH--HHcCCCEEEEcccC----------C-----CcchHHHHHHHHHHh-CCcEEEEEcCCC
Q 029661 24 DLPLDVHLMIVEPEQRVPDF--IKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKDL-GAKAGVVLNPAT 85 (190)
Q Consensus 24 ~~~i~~hlmv~dp~~~i~~~--~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~~-g~~~g~~i~p~t 85 (190)
+.|+.+.+=.+||+.+.+.+ .+.-+|+|-+-.-. | ..+=+.++++.++.. +..+-+=|.-..
T Consensus 73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~ 152 (358)
T KOG2335|consen 73 DRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV 152 (358)
T ss_pred CCceEEEEcCCCHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 67999999999998876543 33334777663211 0 012255677776663 444433233222
Q ss_pred CH----HHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH-cCCC
Q 029661 86 SL----SAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-AGAN 158 (190)
Q Consensus 86 ~~----~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~-aGad 158 (190)
+. +.++.+. ..++.+.+.+..+-..|.+..|..++.|+.+|+-.++ +++-+-|+|. .+.+..+.+ .|||
T Consensus 153 d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~----ipviaNGnI~~~~d~~~~~~~tG~d 228 (358)
T KOG2335|consen 153 DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD----IPVIANGNILSLEDVERCLKYTGAD 228 (358)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC----CcEEeeCCcCcHHHHHHHHHHhCCc
Confidence 33 3333221 1367887777766656666678889999988887653 7899999999 678887777 9999
Q ss_pred EEEEcccccC
Q 029661 159 ALVAGSAVFG 168 (190)
Q Consensus 159 ~~VvGsaI~~ 168 (190)
++-+|+++..
T Consensus 229 GVM~arglL~ 238 (358)
T KOG2335|consen 229 GVMSARGLLY 238 (358)
T ss_pred eEEecchhhc
Confidence 9999987554
No 338
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=96.17 E-value=0.45 Score=38.41 Aligned_cols=137 Identities=20% Similarity=0.248 Sum_probs=75.7
Q ss_pred EEEEEeecCh-HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHH-HHHhC--CcEEEEEcC-------CCCHHHHHHhhc
Q 029661 27 LDVHLMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQ-IKDLG--AKAGVVLNP-------ATSLSAIECVLD 95 (190)
Q Consensus 27 i~~hlmv~dp-~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~-i~~~g--~~~g~~i~p-------~t~~~~~~~~~~ 95 (190)
+.-|| +-.. .+-++.+.+ -+|++ |.-. ...+...++. +.+.+ .++-+=+|. .++.+.+.++++
T Consensus 74 i~WHf-IG~LQsNK~k~v~~-~~~~i--hSlD--r~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~ 147 (228)
T COG0325 74 IEWHF-IGPLQSNKVKLVAE-NFDWI--HSLD--RLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEELDELAQ 147 (228)
T ss_pred eEEEE-echhhhhHHHHHHh-hccee--eecC--HHHHHHHHHHHHHhCCCCceEEEEEecCCccccCCCCHHHHHHHHH
Confidence 55565 2221 223444444 34544 4332 2233333333 34444 555555553 234555555543
Q ss_pred c------cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 96 V------VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 96 ~------~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
. ..+.-+|++.|=.....-.-..+.+++++++-+.+.+.++ -...=|.| ...+..++.||..+=+||+||++
T Consensus 148 ~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~-~~LSMGMS-~D~e~AI~~GaT~VRIGtaiFg~ 225 (228)
T COG0325 148 EVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPI-DELSMGMS-NDYEIAIAEGATMVRIGTAIFGA 225 (228)
T ss_pred HHHhCCCCeEeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CeecCcCc-ccHHHHHHcCCCEEEEcHHhhCC
Confidence 2 4667899998754433334456777777777666543322 12333443 35677899999999999999987
Q ss_pred CC
Q 029661 170 KD 171 (190)
Q Consensus 170 ~d 171 (190)
.+
T Consensus 226 r~ 227 (228)
T COG0325 226 RD 227 (228)
T ss_pred CC
Confidence 53
No 339
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.17 E-value=0.18 Score=41.28 Aligned_cols=140 Identities=19% Similarity=0.137 Sum_probs=84.2
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHHHHhCCcE
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQIKDLGAKA 77 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i~~~g~~~ 77 (190)
+.++.+++. ++..+.++-. .++ +-++.+.++|++.+.+.... +. +.+.+.++.+|+.|..+
T Consensus 50 e~~~~l~~~~~~~~~~~~~r-~~~-~~v~~a~~~g~~~i~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v 126 (259)
T cd07939 50 EAIRAIVALGLPARLIVWCR-AVK-EDIEAALRCGVTAVHISIPV-SDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFV 126 (259)
T ss_pred HHHHHHHhcCCCCEEEEecc-CCH-HHHHHHHhCCcCEEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 456666553 3444444211 233 34678889999998886432 11 23457888999999987
Q ss_pred EEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCc
Q 029661 78 GVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGP 146 (190)
Q Consensus 78 g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~ 146 (190)
.+.+. ..++.+.+.++... +|.|.+ +-+.|...+.++.+.++.+++..+ .++++ +-|...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~-----~~l~~H~Hn~~Gla~ 197 (259)
T cd07939 127 SVGAEDASRADPDFLIEFAEVAQEAGADRLRF----ADTVGILDPFTTYELIRRLRAATD-----LPLEFHAHNDLGLAT 197 (259)
T ss_pred EEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe----CCCCCCCCHHHHHHHHHHHHHhcC-----CeEEEEecCCCChHH
Confidence 65443 33556655555432 566643 444565556666777777776543 34544 445555
Q ss_pred ccHHHHHHcCCCEEEEccccc
Q 029661 147 KNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 147 e~~~~~~~aGad~~VvGsaI~ 167 (190)
.|.-..+++|++.+ =+++.
T Consensus 198 An~laAi~aG~~~v--d~s~~ 216 (259)
T cd07939 198 ANTLAAVRAGATHV--SVTVN 216 (259)
T ss_pred HHHHHHHHhCCCEE--EEecc
Confidence 57778889999975 44444
No 340
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.15 E-value=0.29 Score=40.92 Aligned_cols=147 Identities=14% Similarity=0.198 Sum_probs=96.3
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE-----
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL----- 81 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i----- 81 (190)
.++.+.+..++|+-+||==....+.+..+.++|.+.|-+=+...+. ++ -.++++.++..|+.+ |-.-
T Consensus 65 ~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~ 144 (284)
T PRK12737 65 IAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDD 144 (284)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCC
Confidence 3444555568899999854444567889999999988875433221 22 356778888887765 2210
Q ss_pred ---c----CCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--ccc
Q 029661 82 ---N----PATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKN 148 (190)
Q Consensus 82 ---~----p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~ 148 (190)
. .-|..+..+++.+. +|.+.+ -++|--+.+. ..--+++++++++.. ++++..=||-. .+.
T Consensus 145 ~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~--p~Ld~~~L~~I~~~~-----~iPLVlHGgSG~~~e~ 217 (284)
T PRK12737 145 LVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGE--PKLDFERLAEIREKV-----SIPLVLHGASGVPDED 217 (284)
T ss_pred cccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCC--CcCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHH
Confidence 0 13566777777754 786543 2334111121 123477788887765 36788888766 589
Q ss_pred HHHHHHcCCCEEEEcccccC
Q 029661 149 AYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsaI~~ 168 (190)
++++++.|..-+=++|.+..
T Consensus 218 ~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 218 VKKAISLGICKVNVATELKI 237 (284)
T ss_pred HHHHHHCCCeEEEeCcHHHH
Confidence 99999999999999998753
No 341
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.14 E-value=0.023 Score=45.69 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=52.1
Q ss_pred CCCCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH--cCCC
Q 029661 83 PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE--AGAN 158 (190)
Q Consensus 83 p~t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~--aGad 158 (190)
...|++..+.|.+. +|.+.+.-.+- ..|. +..++.|+++.+. ++++++|||+ .+.++.+.. .|||
T Consensus 35 ~~dP~~~a~~~~~~g~~~l~ivDLd~-~~~~---~~n~~~i~~i~~~-------~~v~vgGGirs~e~~~~~~~~l~~a~ 103 (221)
T TIGR00734 35 SSSPDDAAKVIEEIGARFIYIADLDR-IVGL---GDNFSLLSKLSKR-------VELIADCGVRSPEDLETLPFTLEFAS 103 (221)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEccc-ccCC---cchHHHHHHHHhh-------CcEEEcCccCCHHHHHHHHhhhccce
Confidence 35778877777643 78887766652 2222 2335555555543 3699999999 688887754 3699
Q ss_pred EEEEcccccCCC
Q 029661 159 ALVAGSAVFGAK 170 (190)
Q Consensus 159 ~~VvGsaI~~~~ 170 (190)
-+|+||.-++.+
T Consensus 104 rvvigT~a~~~p 115 (221)
T TIGR00734 104 RVVVATETLDIT 115 (221)
T ss_pred EEeecChhhCCH
Confidence 999999988744
No 342
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=96.05 E-value=0.22 Score=41.26 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=84.5
Q ss_pred CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH---------------------------hCC
Q 029661 23 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD---------------------------LGA 75 (190)
Q Consensus 23 ~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~---------------------------~g~ 75 (190)
.+..-.+..--.+| ..+..+.++||++|.++.-. +.++..++++++|= .+-
T Consensus 67 ~g~~~lVRvp~~~~-~~i~r~LD~GA~GIivP~V~-saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~ 144 (267)
T PRK10128 67 YASQPVIRPVEGSK-PLIKQVLDIGAQTLLIPMVD-TAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQAND 144 (267)
T ss_pred cCCCeEEECCCCCH-HHHHHHhCCCCCeeEecCcC-CHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhcc
Confidence 44444443333344 36788999999999997443 24556666655531 111
Q ss_pred cEEEEEcCCCC--HHHHHHhhc--ccceEEEE----eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc
Q 029661 76 KAGVVLNPATS--LSAIECVLD--VVDLVLIM----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 147 (190)
Q Consensus 76 ~~g~~i~p~t~--~~~~~~~~~--~~d~i~~m----~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e 147 (190)
++.+.+.-+|+ ++.+++++. .+|.+.+- +..-|..+|...|+..+.++++.+...+++. ...+ ..-+++
T Consensus 145 ~~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~-~~~~~~ 221 (267)
T PRK10128 145 SLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGF-LAVDPD 221 (267)
T ss_pred ccEEEEEECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEE-cCCCHH
Confidence 22222222333 455666554 36777653 2233555676678888888888888777653 2221 234678
Q ss_pred cHHHHHHcCCCEEEEccc
Q 029661 148 NAYKVIEAGANALVAGSA 165 (190)
Q Consensus 148 ~~~~~~~aGad~~VvGsa 165 (190)
.++.+++.|++.+++|+-
T Consensus 222 ~a~~~~~~G~~~v~~g~D 239 (267)
T PRK10128 222 MAQKCLAWGANFVAVGVD 239 (267)
T ss_pred HHHHHHHcCCcEEEEChH
Confidence 899999999999999974
No 343
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.04 E-value=0.16 Score=42.42 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=79.9
Q ss_pred HHHHHhccCCCCcEEEEEee-cChHH---HHHHHHHcCCCEEEE----------cc----cC--CCcchHHHHHHHHHHh
Q 029661 14 LVVDALRPVTDLPLDVHLMI-VEPEQ---RVPDFIKAGADIVSV----------HC----EQ--SSTIHLHRTLNQIKDL 73 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv-~dp~~---~i~~~~~~Gad~v~v----------h~----e~--~~~~~~~~~i~~i~~~ 73 (190)
..++.|...+++|+.+|.-. -||.. .++.+.++|+.++++ |. +. .+.++..+.|+++++.
T Consensus 68 ~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a 147 (285)
T TIGR02320 68 DVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA 147 (285)
T ss_pred HHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh
Confidence 34556666678896665555 56654 488899999999999 11 00 0233445566666654
Q ss_pred --CCcEEEEEcC-----CCC----HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEe
Q 029661 74 --GAKAGVVLNP-----ATS----LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 141 (190)
Q Consensus 74 --g~~~g~~i~p-----~t~----~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd 141 (190)
+-++.+.... ... +++.+.|.+. +|.|.+. + +. ...+.++++.+.++....+.++.+-
T Consensus 148 ~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~----~--~~----~~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 148 QTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH----S--RK----KDPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred ccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec----C--CC----CCHHHHHHHHHHhhhhCCCCCEEEe
Confidence 3333332221 111 3455556554 8988763 2 10 1122233333333211112344433
Q ss_pred CCCC-cccHHHHHHcCCCEEEEcccccCC
Q 029661 142 GGVG-PKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 142 GGI~-~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.+-+ .-++.++.+.|++.++.|+..+.+
T Consensus 218 ~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 218 PTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred cCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 3332 347899999999999999877753
No 344
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.01 E-value=0.12 Score=44.31 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=75.3
Q ss_pred HHHHcCCCEEEEcccCC--------C------------c----chHHHHHHHHHHh-CC--cEEEEEcCCC------CHH
Q 029661 42 DFIKAGADIVSVHCEQS--------S------------T----IHLHRTLNQIKDL-GA--KAGVVLNPAT------SLS 88 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e~~--------~------------~----~~~~~~i~~i~~~-g~--~~g~~i~p~t------~~~ 88 (190)
.+.++|+|+|-+|.-.+ + . .-+.++++.+|+. |. .+++=+++.. +.+
T Consensus 149 ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~ 228 (343)
T cd04734 149 RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPD 228 (343)
T ss_pred HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHH
Confidence 35779999999997211 1 0 1245788888885 44 4566666532 122
Q ss_pred H---HHHhhc-c--cceEEEEeeecCCCCc-----------ccchh-hHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccH
Q 029661 89 A---IECVLD-V--VDLVLIMSVNPGFGGQ-----------SFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNA 149 (190)
Q Consensus 89 ~---~~~~~~-~--~d~i~~m~v~pG~~gq-----------~~~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~ 149 (190)
. +.+.++ . +|+|-+- -|...+ .+.+. .++.++++|+.. +.++.+-|||+ ++.+
T Consensus 229 e~~~~~~~l~~~G~vd~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~ipvi~~G~i~~~~~~ 300 (343)
T cd04734 229 EALEIAARLAAEGLIDYVNVS---AGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV-----DLPVFHAGRIRDPAEA 300 (343)
T ss_pred HHHHHHHHHHhcCCCCEEEeC---CCCCCcccccccccCCCCCCcchhHHHHHHHHHHc-----CCCEEeeCCCCCHHHH
Confidence 2 223332 2 6777652 121110 01111 244455555543 46888999996 7999
Q ss_pred HHHHHcC-CCEEEEcccccCCCCHH
Q 029661 150 YKVIEAG-ANALVAGSAVFGAKDYA 173 (190)
Q Consensus 150 ~~~~~aG-ad~~VvGsaI~~~~dp~ 173 (190)
.++++.| +|.+-+|+++...++.-
T Consensus 301 ~~~l~~~~~D~V~~gR~~ladP~l~ 325 (343)
T cd04734 301 EQALAAGHADMVGMTRAHIADPHLV 325 (343)
T ss_pred HHHHHcCCCCeeeecHHhHhCccHH
Confidence 9988866 99999999999877664
No 345
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.01 E-value=0.26 Score=41.41 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=85.5
Q ss_pred HHHHHHhccCCCCcEEEEEeec--ChHH---HHHHHHHcCCCEEEEcccC-------------CCcchHHHHHHHHHHhC
Q 029661 13 PLVVDALRPVTDLPLDVHLMIV--EPEQ---RVPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDLG 74 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~--dp~~---~i~~~~~~Gad~v~vh~e~-------------~~~~~~~~~i~~i~~~g 74 (190)
...+++|...+++|+.+|.=+- +|.. .++.+.++|+-++++---. .+.++..+-|+++++.-
T Consensus 67 ~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~ 146 (292)
T PRK11320 67 LIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDAR 146 (292)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhc
Confidence 4556667777889999998873 6754 4888999999988883210 01223344455555532
Q ss_pred CcEEEEEcCCCC----------HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE---EE
Q 029661 75 AKAGVVLNPATS----------LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI---EV 140 (190)
Q Consensus 75 ~~~g~~i~p~t~----------~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i---~v 140 (190)
...-+.|+--|+ +++.+.|.+ .+|.|.+ ||. ..++.++++.+.++ .++ ..
T Consensus 147 ~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi----~~~-------~~~~~i~~~~~~~~-----~Pl~~n~~ 210 (292)
T PRK11320 147 TDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFP----EAM-------TELEMYRRFADAVK-----VPILANIT 210 (292)
T ss_pred cCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEe----cCC-------CCHHHHHHHHHhcC-----CCEEEEec
Confidence 223344443332 345555665 4898865 342 13444555554432 233 23
Q ss_pred eCCCCc-ccHHHHHHcCCCEEEEcccccCC
Q 029661 141 DGGVGP-KNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 141 dGGI~~-e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.||-++ -+..++.+.|++.++.|+..+.+
T Consensus 211 ~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 211 EFGATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred cCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 456554 57999999999999999877653
No 346
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.31 Score=41.46 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=92.5
Q ss_pred CCcEEEEEeecChHHHH---HHHHHcCCCEEEEcccC----------C-----CcchHHHHHHHHHHhC--CcEEEEEcC
Q 029661 24 DLPLDVHLMIVEPEQRV---PDFIKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKDLG--AKAGVVLNP 83 (190)
Q Consensus 24 ~~~i~~hlmv~dp~~~i---~~~~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~~g--~~~g~~i~p 83 (190)
..|+.+.|-.+||.... +.+.+.|+|.|=+-.-+ | ..+-+.+++++.++.. +.+-+=+.-
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 56899999999996543 34678898988773211 1 1234677888888865 344443322
Q ss_pred CCC-----HHHHHHhhcc--cceEEEEeeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 84 ATS-----LSAIECVLDV--VDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 84 ~t~-----~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
..+ ...+.+.+.. ++.+.+.+.. ..|.+. +.-++.|+++++..++ ++|..-|+|. ++++.++.+
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRt---r~~~y~~~ad~~~I~~vk~~~~~----ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRT---RAQGYLGPADWDYIKELKEAVPS----IPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEeccc---HHhcCCCccCHHHHHHHHHhCCC----CeEEeCCCcCCHHHHHHHHH
Confidence 221 2223444432 6777654444 333332 3568888888887642 7898999996 799998877
Q ss_pred -cCCCEEEEcccccCCCCH
Q 029661 155 -AGANALVAGSAVFGAKDY 172 (190)
Q Consensus 155 -aGad~~VvGsaI~~~~dp 172 (190)
.|+|.+-+|++.++.+..
T Consensus 219 ~tg~DgVMigRga~~nP~l 237 (323)
T COG0042 219 YTGADGVMIGRGALGNPWL 237 (323)
T ss_pred hhCCCEEEEcHHHccCCcH
Confidence 469999999999887654
No 347
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.00 E-value=0.12 Score=43.11 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEcC-----CCCHHHHHHhhcc-
Q 029661 37 EQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLNP-----ATSLSAIECVLDV- 96 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~p-----~t~~~~~~~~~~~- 96 (190)
..-++.+.++|++.|.+-.-+. ..+.+.+.++.++++|.++.+.+.. .++.+.+.+++..
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 4458889999999988854210 0123455688899999998776652 3456655555432
Q ss_pred ----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEEE
Q 029661 97 ----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 161 (190)
Q Consensus 97 ----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~V 161 (190)
+|.|.+ +.+.|...+..+.+.++.+++..++ .+|.+ |-|....|.-..+++||+.+=
T Consensus 157 ~~~G~~~i~l----~DT~G~~~P~~v~~l~~~l~~~~~~----~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd 221 (280)
T cd07945 157 SDLPIKRIML----PDTLGILSPFETYTYISDMVKRYPN----LHFDFHAHNDYDLAVANVLAAVKAGIKGLH 221 (280)
T ss_pred HHcCCCEEEe----cCCCCCCCHHHHHHHHHHHHhhCCC----CeEEEEeCCCCCHHHHHHHHHHHhCCCEEE
Confidence 566543 3445555556667777777765432 34544 556666677788999999753
No 348
>PTZ00300 pyruvate kinase; Provisional
Probab=95.97 E-value=0.3 Score=43.46 Aligned_cols=139 Identities=12% Similarity=0.142 Sum_probs=85.3
Q ss_pred HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCC-Ccccc
Q 029661 39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFG-GQSFI 115 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~-gq~~~ 115 (190)
.++.+.+.|+|+|.+..-. +.+++.++.+.+.+.|..+.+...-+|+ ++.+.++++.+|-|++-.-+-|.. | .
T Consensus 152 dI~~ald~gvd~I~~SfVr-saeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~---~ 227 (454)
T PTZ00300 152 DLQFGVEQGVDMIFASFIR-SAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIP---A 227 (454)
T ss_pred HHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcC---h
Confidence 4677889999999997654 3567888888887777777776555555 688999999999998732222211 1 2
Q ss_pred hhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------Cc---c--cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661 116 ESQVKKISDLRRMCLEKGVNPWIEVDGGV--------GP---K--NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182 (190)
Q Consensus 116 ~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------~~---e--~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~ 182 (190)
+......+++-+.+.+.+. ++-+.-=+ .| | .+..++-.|+|.+.+..-=-....|.++++.+++.
T Consensus 228 e~vp~~Qk~Ii~~~~~~gk--pvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I 305 (454)
T PTZ00300 228 EKVVVAQKILISKCNVAGK--PVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARI 305 (454)
T ss_pred HHHHHHHHHHHHHHHHcCC--CEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHH
Confidence 3333333444444444332 22222111 11 1 34445556999999864333346888888888775
Q ss_pred h
Q 029661 183 K 183 (190)
Q Consensus 183 ~ 183 (190)
+
T Consensus 306 ~ 306 (454)
T PTZ00300 306 C 306 (454)
T ss_pred H
Confidence 4
No 349
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.93 E-value=0.3 Score=41.24 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=95.2
Q ss_pred HHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC-cch---HHHHHHHHHHhCCcE----EEEE----
Q 029661 15 VVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKA----GVVL---- 81 (190)
Q Consensus 15 ~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~-~~~---~~~~i~~i~~~g~~~----g~~i---- 81 (190)
.++.+.+.. .+|+.+||==..-.+.+..+.++|.+.|-+=....+ .++ -.++++.++.+|+.+ |-.-
T Consensus 64 ~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed 143 (307)
T PRK05835 64 MVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIED 143 (307)
T ss_pred HHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccC
Confidence 444454444 489999985543455788899999999988544322 122 356778888887654 2210
Q ss_pred ----c----CCCCHHHHHHhhc--ccceEEE--EeeecCCCCc-ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cc
Q 029661 82 ----N----PATSLSAIECVLD--VVDLVLI--MSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK 147 (190)
Q Consensus 82 ----~----p~t~~~~~~~~~~--~~d~i~~--m~v~pG~~gq-~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e 147 (190)
. .-|+.+...++.+ .+|.+.+ -++| |...+ .-..-.+++|+++++.+ ++++..=||-. ++
T Consensus 144 ~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~L~f~~L~~I~~~~-----~iPLVLHGgSGip~ 217 (307)
T PRK05835 144 NISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSH-GAFKFKGEPKLDFERLQEVKRLT-----NIPLVLHGASAIPD 217 (307)
T ss_pred CcccccccccCCCHHHHHHHHHhhCCCEEEEccCccc-cccCCCCCCccCHHHHHHHHHHh-----CCCEEEeCCCCCch
Confidence 0 1355677777775 4787532 2333 22211 11223477888887765 37888888877 33
Q ss_pred ----------------------cHHHHHHcCCCEEEEcccccC
Q 029661 148 ----------------------NAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 148 ----------------------~~~~~~~aGad~~VvGsaI~~ 168 (190)
.++++++.|..-+=++|.+..
T Consensus 218 e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~ 260 (307)
T PRK05835 218 DVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRI 260 (307)
T ss_pred HHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHH
Confidence 899999999999999998754
No 350
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=95.87 E-value=0.092 Score=42.97 Aligned_cols=137 Identities=20% Similarity=0.180 Sum_probs=85.4
Q ss_pred CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH--hCC-------------------------c
Q 029661 24 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD--LGA-------------------------K 76 (190)
Q Consensus 24 ~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~--~g~-------------------------~ 76 (190)
+....+..=..++. .+..+.+.|+++|.++.-. +.++..++++.+|- .|. .
T Consensus 62 g~~~~VRv~~~~~~-~i~~~Ld~Ga~gIivP~v~-s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~ 139 (249)
T TIGR02311 62 PSSPVVRPAIGDPV-LIKQLLDIGAQTLLVPMIE-TAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEE 139 (249)
T ss_pred CCCcEEECCCCCHH-HHHHHhCCCCCEEEecCcC-CHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhc
Confidence 34555543233443 5788999999999997543 36678888888773 122 1
Q ss_pred EEEEEcCCCC--HHHHHHhhc--ccceEEEE----eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc
Q 029661 77 AGVVLNPATS--LSAIECVLD--VVDLVLIM----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 148 (190)
Q Consensus 77 ~g~~i~p~t~--~~~~~~~~~--~~d~i~~m----~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~ 148 (190)
..+...-+|+ ++.+++++. .+|.+.+- +..-|..++...++..+-++++++.+...+.... + ..-+++.
T Consensus 140 ~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~G--i-~~~~~~~ 216 (249)
T TIGR02311 140 ICVLLQVETREALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAG--I-LTADPKL 216 (249)
T ss_pred eEEEEEecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCcee--e-cCCCHHH
Confidence 2233333444 566777763 46777663 2233544554556666667777777765543222 2 2345788
Q ss_pred HHHHHHcCCCEEEEccc
Q 029661 149 AYKVIEAGANALVAGSA 165 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsa 165 (190)
.+.+++.|++.++.|+-
T Consensus 217 ~~~~~~~G~~~~~~~~D 233 (249)
T TIGR02311 217 ARQYLKLGALFVAVGVD 233 (249)
T ss_pred HHHHHHcCCCEEEEchH
Confidence 99999999999999963
No 351
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=95.82 E-value=0.034 Score=43.95 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=44.7
Q ss_pred cchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 029661 114 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177 (190)
Q Consensus 114 ~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~ 177 (190)
|.++.+.+...+.. -++.+.|||+ +|++..+...|++.+.+|++|++...|-+..+
T Consensus 168 ~~~E~l~~~~~~s~--------~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~~ 224 (229)
T COG1411 168 PDYELLTKVLELSE--------HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVEQ 224 (229)
T ss_pred CCHHHHHHHHHhcc--------CceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHHh
Confidence 66777766654332 2578999999 79999999999999999999999988876554
No 352
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=95.75 E-value=0.81 Score=37.04 Aligned_cols=153 Identities=19% Similarity=0.217 Sum_probs=85.5
Q ss_pred ccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC------------CcchHHHHHHHHHH
Q 029661 5 FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS------------STIHLHRTLNQIKD 72 (190)
Q Consensus 5 fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~------------~~~~~~~~i~~i~~ 72 (190)
+||--.| .+.++++++.++..+.+|.=.-+ +.+++.+++.++|.+++-.... +.++-.+.++.+++
T Consensus 70 ~VPl~kf-~d~lK~lke~~~l~inaHvGfvd-E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e 147 (275)
T COG1856 70 KVPLWKF-KDELKALKERTGLLINAHVGFVD-ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKE 147 (275)
T ss_pred CccHHHH-HHHHHHHHHhhCeEEEEEeeecc-HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 4443333 35688888888999999998888 7899999999999999854320 01123345677888
Q ss_pred hCCcEEEEE--c-----CCCCHHHHHHhhc-ccceEEEEeee--cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC
Q 029661 73 LGAKAGVVL--N-----PATSLSAIECVLD-VVDLVLIMSVN--PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 142 (190)
Q Consensus 73 ~g~~~g~~i--~-----p~t~~~~~~~~~~-~~d~i~~m~v~--pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG 142 (190)
.|+++..=+ . -....+.++-+.. ..|.+.+-..- ||+.-+...|-..+.+-++-++..+.-.+ ++ +-|
T Consensus 148 ~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv-~iG 225 (275)
T COG1856 148 NGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PV-SIG 225 (275)
T ss_pred cCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-Ce-eEe
Confidence 898875322 1 1223333332222 25655443333 45443333333343333222222222122 44 455
Q ss_pred CCCcc------cHHHHHHcCCCEEE
Q 029661 143 GVGPK------NAYKVIEAGANALV 161 (190)
Q Consensus 143 GI~~e------~~~~~~~aGad~~V 161 (190)
-.+|- -=+.++.+|+|.+.
T Consensus 226 CmrP~Ge~rvk~d~~av~~gVd~It 250 (275)
T COG1856 226 CMRPRGEWRVKLDKEAVLAGVDRIT 250 (275)
T ss_pred ecCcCchhHHHHHHHHHHcCCceee
Confidence 55542 22356788888764
No 353
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.74 E-value=0.25 Score=35.33 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEE
Q 029661 64 HRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEV 140 (190)
Q Consensus 64 ~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~v 140 (190)
.-+...+++.|.++ +.+.+.+|.+.+.+.+. ..|+|.+ |+. .++. .+...+-++++|+. +. ++.|.+
T Consensus 17 ~~~~~~l~~~G~~V-~~lg~~~~~~~l~~~~~~~~pdvV~i-S~~---~~~~-~~~~~~~i~~l~~~----~~~~~~i~v 86 (119)
T cd02067 17 NIVARALRDAGFEV-IDLGVDVPPEEIVEAAKEEDADAIGL-SGL---LTTH-MTLMKEVIEELKEA----GLDDIPVLV 86 (119)
T ss_pred HHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEE-ecc---cccc-HHHHHHHHHHHHHc----CCCCCeEEE
Confidence 34556677889988 55667788876666543 3677765 332 1221 23333344444443 33 577878
Q ss_pred eCCCCcccHHHHHHcCCCEEEE
Q 029661 141 DGGVGPKNAYKVIEAGANALVA 162 (190)
Q Consensus 141 dGGI~~e~~~~~~~aGad~~Vv 162 (190)
.|..-.+....+.+.|+|.++-
T Consensus 87 GG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 87 GGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred ECCCCChhHHHHHHcCCeEEEC
Confidence 8877666667889999998863
No 354
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.72 E-value=0.061 Score=44.60 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=80.0
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE----EEEEcCCCC
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA----GVVLNPATS 86 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~----g~~i~p~t~ 86 (190)
-|.++++++++.++.|+.-++|-.. .++.+.+. +|++=+.+.. ..+ .++++++.+.|+-+ |.+++|..-
T Consensus 74 eGL~iL~~vk~~~GlpvvTeV~~~~---~~~~~ae~-vDilQIgAr~--~rn-tdLL~a~~~t~kpV~lKrGqf~s~~e~ 146 (281)
T PRK12457 74 EGLRIFEEVKARFGVPVITDVHEVE---QAAPVAEV-ADVLQVPAFL--ARQ-TDLVVAIAKTGKPVNIKKPQFMSPTQM 146 (281)
T ss_pred HHHHHHHHHHHHHCCceEEEeCCHH---HHHHHhhh-CeEEeeCchh--hch-HHHHHHHhccCCeEEecCCCcCCHHHH
Confidence 3677888888889999999887654 56777777 9999999874 232 46788877777443 333444221
Q ss_pred HHHHHHhhcc--cceEEEEeeecCCCCcccchhh--HHHHHHHHHHHhhcCCCCeEEEe---------------CCCC--
Q 029661 87 LSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQ--VKKISDLRRMCLEKGVNPWIEVD---------------GGVG-- 145 (190)
Q Consensus 87 ~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~~--~~ki~~~~~~~~~~~~~~~i~vd---------------GGI~-- 145 (190)
....+++... -++++ .+=|+.- .+...+ +.-|-.+|++. .++++.+| ||.+
T Consensus 147 ~~aae~i~~~Gn~~vil---cERG~~f-gy~~~~~D~~~ip~mk~~~----t~lPVi~DpSHsvq~p~~~g~~s~G~re~ 218 (281)
T PRK12457 147 KHVVSKCREAGNDRVIL---CERGSSF-GYDNLVVDMLGFRQMKRTT----GDLPVIFDVTHSLQCRDPLGAASGGRRRQ 218 (281)
T ss_pred HHHHHHHHHcCCCeEEE---EeCCCCC-CCCCcccchHHHHHHHhhC----CCCCEEEeCCccccCCCCCCCCCCCCHHH
Confidence 2223333322 23333 3445430 111112 22233444431 24677777 3443
Q ss_pred -cccHHHHHHcCCCEEEEcc
Q 029661 146 -PKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 146 -~e~~~~~~~aGad~~VvGs 164 (190)
+.-.+..+.+|||++.+=+
T Consensus 219 v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 219 VLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 2244566789999998765
No 355
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=95.71 E-value=0.18 Score=41.57 Aligned_cols=139 Identities=17% Similarity=0.116 Sum_probs=82.8
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcC----CCEEEEcccCC--------------CcchHHHHHHHHHHhC
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAG----ADIVSVHCEQS--------------STIHLHRTLNQIKDLG 74 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~G----ad~v~vh~e~~--------------~~~~~~~~i~~i~~~g 74 (190)
+.++.+++. ++..+.+... .+ ...++.+.++| ++.+.+..... ..+.+.+.++.+|+.|
T Consensus 50 ~~~~~l~~~~~~~~~~~l~r-~~-~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G 127 (268)
T cd07940 50 EAVKRIAREVLNAEICGLAR-AV-KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHG 127 (268)
T ss_pred HHHHHHHHhCCCCEEEEEcc-CC-HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence 445555552 4555554321 22 23477788888 99888854210 0234567888999999
Q ss_pred CcEEEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC----C
Q 029661 75 AKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG----G 143 (190)
Q Consensus 75 ~~~g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG----G 143 (190)
.++.+... +.++.+.+.+++.. +|.|.+ +-+.|...+..+.+.++.+|+..++ .+.++.+=+ |
T Consensus 128 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~l~~H~Hn~~G 201 (268)
T cd07940 128 LDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI----PDTVGYLTPEEFGELIKKLKENVPN--IKVPISVHCHNDLG 201 (268)
T ss_pred CeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCCCCHHHHHHHHHHHHHhCCC--CceeEEEEecCCcc
Confidence 88775433 33556655554432 465543 3445666667777778888876542 124555444 4
Q ss_pred CCcccHHHHHHcCCCEE
Q 029661 144 VGPKNAYKVIEAGANAL 160 (190)
Q Consensus 144 I~~e~~~~~~~aGad~~ 160 (190)
....|.-..+++|++.|
T Consensus 202 lA~An~laAi~aG~~~i 218 (268)
T cd07940 202 LAVANSLAAVEAGARQV 218 (268)
T ss_pred hHHHHHHHHHHhCCCEE
Confidence 44457778889999975
No 356
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=95.70 E-value=0.42 Score=40.01 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=95.2
Q ss_pred HHHHhccCCC--CcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEc--
Q 029661 15 VVDALRPVTD--LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLN-- 82 (190)
Q Consensus 15 ~v~~i~~~~~--~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~-- 82 (190)
.++.+.+..+ +|+-+||==....+.+..+.++|.+.|-+=....+. ++ -.++++.++..|..+ |-.=.
T Consensus 66 ~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~e 145 (286)
T PRK08610 66 MVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQE 145 (286)
T ss_pred HHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCcc
Confidence 3444443333 799999855444557788999999999885443221 22 356777788777654 32211
Q ss_pred --------CCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchh-hHHHHHHHHHHHhhcCCCCeEEEeCCCC--cc
Q 029661 83 --------PATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG--PK 147 (190)
Q Consensus 83 --------p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~-~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e 147 (190)
.-|..+..+++.+. +|.+.+ -++| |... -.|. -+++++++++.. ++++..=||-. .+
T Consensus 146 d~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~H-G~Y~--~~p~Ld~~~L~~I~~~~-----~vPLVLHGgSG~~~e 217 (286)
T PRK08610 146 DDVVADGIIYADPKECQELVEKTGIDALAPALGSVH-GPYK--GEPKLGFKEMEEIGLST-----GLPLVLHGGTGIPTK 217 (286)
T ss_pred CCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccc-cccC--CCCCCCHHHHHHHHHHH-----CCCEEEeCCCCCCHH
Confidence 12677778888764 787643 3334 2221 1233 377788877754 37888888766 48
Q ss_pred cHHHHHHcCCCEEEEcccccC
Q 029661 148 NAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 148 ~~~~~~~aGad~~VvGsaI~~ 168 (190)
.++++++.|+.-+=++|.+..
T Consensus 218 ~~~~ai~~GI~KiNi~T~l~~ 238 (286)
T PRK08610 218 DIQKAIPFGTAKINVNTENQI 238 (286)
T ss_pred HHHHHHHCCCeEEEeccHHHH
Confidence 999999999999999998854
No 357
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=95.63 E-value=0.29 Score=42.28 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=83.3
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC---------------cchHHHHHHHHHHhCCcE
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDLGAKA 77 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~---------------~~~~~~~i~~i~~~g~~~ 77 (190)
+.++.+++. ++..+.++. -.+ .+-++.+.++|++.|.+..-. + .+.+.+.++.+|++|.++
T Consensus 53 e~i~~i~~~~~~~~i~~~~-r~~-~~di~~a~~~g~~~i~i~~~~-Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v 129 (365)
T TIGR02660 53 AVIRAIVALGLPARLMAWC-RAR-DADIEAAARCGVDAVHISIPV-SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV 129 (365)
T ss_pred HHHHHHHHcCCCcEEEEEc-CCC-HHHHHHHHcCCcCEEEEEEcc-CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE
Confidence 567777654 443443322 123 235788899999998886543 1 123457888999999887
Q ss_pred EEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCc
Q 029661 78 GVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGP 146 (190)
Q Consensus 78 g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~ 146 (190)
-+... +.++.+.+.++... +|.|.+ +.+.|...+..+.+.++.+++.. +.+|.+ |-|...
T Consensus 130 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l----~DT~G~~~P~~v~~lv~~l~~~~-----~v~l~~H~HNd~GlA~ 200 (365)
T TIGR02660 130 SVGGEDASRADPDFLVELAEVAAEAGADRFRF----ADTVGILDPFSTYELVRALRQAV-----DLPLEMHAHNDLGMAT 200 (365)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE----cccCCCCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCChHH
Confidence 66543 33556666555432 566643 44556555566666677776543 234443 556666
Q ss_pred ccHHHHHHcCCCEE
Q 029661 147 KNAYKVIEAGANAL 160 (190)
Q Consensus 147 e~~~~~~~aGad~~ 160 (190)
-|.-..+++||+.+
T Consensus 201 ANalaA~~aGa~~v 214 (365)
T TIGR02660 201 ANTLAAVRAGATHV 214 (365)
T ss_pred HHHHHHHHhCCCEE
Confidence 67778889999965
No 358
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=95.62 E-value=0.082 Score=45.42 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=86.3
Q ss_pred HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC--HHHHHHhhcccceEEE----EeeecCCCCc
Q 029661 39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLI----MSVNPGFGGQ 112 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~----m~v~pG~~gq 112 (190)
.++.+.+.|+|+|.+..-- +.+++.++-+.++++|.++.+.-.-+|+ ++.+.+++..+|-|++ ++++-++.
T Consensus 181 di~fa~~~~vD~IalSFVr-sa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e-- 257 (348)
T PF00224_consen 181 DIKFAVENGVDFIALSFVR-SAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFE-- 257 (348)
T ss_dssp HHHHHHHTT-SEEEETTE--SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGG--
T ss_pred HHHHHHHcCCCEEEecCCC-chHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHH--
Confidence 4566788999999997543 3556777777777778777766544444 6778899989999987 34444332
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC----------Ccc---cHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 029661 113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGV----------GPK---NAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179 (190)
Q Consensus 113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI----------~~e---~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l 179 (190)
-.|..-++|-+..... ..++-+..-+ +.. .+..++..|||.+.+..-=.....|.++++.+
T Consensus 258 -~v~~~Qk~ii~~~~~~-----~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~ 331 (348)
T PF00224_consen 258 -KVPIIQKRIIKKCNAA-----GKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTM 331 (348)
T ss_dssp -GHHHHHHHHHHHHHHH-----T-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHh-----CCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHH
Confidence 1333333333333222 2367777776 111 34445566999999985544457899999999
Q ss_pred HHhhc
Q 029661 180 KTSKR 184 (190)
Q Consensus 180 ~~~~~ 184 (190)
.+.++
T Consensus 332 ~~i~~ 336 (348)
T PF00224_consen 332 ARIIR 336 (348)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88665
No 359
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=95.60 E-value=0.82 Score=38.33 Aligned_cols=137 Identities=16% Similarity=0.236 Sum_probs=92.3
Q ss_pred CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-chH---HHHHHHHHHhCCcE----EEEE------------cC
Q 029661 24 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IHL---HRTLNQIKDLGAKA----GVVL------------NP 83 (190)
Q Consensus 24 ~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~~---~~~i~~i~~~g~~~----g~~i------------~p 83 (190)
++|+.+||==..-.+++..+.++|.+.|-+=....+. +++ .++++.++..|+.+ |-.- ..
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~ 156 (288)
T TIGR00167 77 GVPVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESAL 156 (288)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccc
Confidence 7899999855444567888999999999885443221 222 46677777777665 2220 11
Q ss_pred CCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchh--hHHHHHHHHHHHhhcCCCCeEEEeCCCC--cccHHHHHHc
Q 029661 84 ATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEA 155 (190)
Q Consensus 84 ~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~--~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~~~~~~a 155 (190)
-|..+..+++.+. +|.+.+ -++| |.. +..|. .+++++++++.+ ++++..=||-. .+.++++++.
T Consensus 157 ~T~peea~~Fv~~TgvD~LAvaiGt~H-G~y--~~~p~~Ld~~~L~~I~~~v-----~vPLVlHGgSG~~~e~~~~ai~~ 228 (288)
T TIGR00167 157 YTDPEEAKEFVKLTGVDSLAAAIGNVH-GVY--KGEPKGLDFERLEEIQKYV-----NLPLVLHGGSGIPDEEIKKAISL 228 (288)
T ss_pred CCCHHHHHHHHhccCCcEEeeccCccc-ccc--CCCCCccCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHc
Confidence 3566777888764 777643 2333 211 11233 577888888776 37888888776 4799999999
Q ss_pred CCCEEEEcccccC
Q 029661 156 GANALVAGSAVFG 168 (190)
Q Consensus 156 Gad~~VvGsaI~~ 168 (190)
|+.-+=++|.+..
T Consensus 229 Gi~KiNi~T~l~~ 241 (288)
T TIGR00167 229 GVVKVNIDTELQI 241 (288)
T ss_pred CCeEEEcChHHHH
Confidence 9999999998753
No 360
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=95.57 E-value=0.12 Score=49.15 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=82.8
Q ss_pred HcCCCE--EEEcccCCCcchHHHHHHHHHHhC-------CcEEEEEcCCCCHHHHHHhhcccceEEEEe---------ee
Q 029661 45 KAGADI--VSVHCEQSSTIHLHRTLNQIKDLG-------AKAGVVLNPATSLSAIECVLDVVDLVLIMS---------VN 106 (190)
Q Consensus 45 ~~Gad~--v~vh~e~~~~~~~~~~i~~i~~~g-------~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~---------v~ 106 (190)
+.|+.. |.++.-. +.+++.++.+.++.+| ..+|+.+....-+..++++++.+|.+.+-+ +.
T Consensus 625 d~G~~~~~Im~PmV~-s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~d 703 (782)
T TIGR01418 625 EMGLTNVEVMIPFVR-TPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVD 703 (782)
T ss_pred hcCCCCeEEEecCCC-CHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCcc
Confidence 678887 7776554 3567777788887754 345666654444677888887899887632 21
Q ss_pred c-----CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC---CCcccHHHHHHcCCCEEEEccc
Q 029661 107 P-----GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALVAGSA 165 (190)
Q Consensus 107 p-----G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG---I~~e~~~~~~~aGad~~VvGsa 165 (190)
- +.-++...|..++.|+++.+-..+++ .++.+-|- -+++.++.+++.|++.+.+++.
T Consensus 704 R~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g--~~vgicge~~~~~p~~~~~l~~~G~~~ls~~~d 768 (782)
T TIGR01418 704 RDSGLVAHLFDERNPAVLRLIEMAIKAAKEHG--KKVGICGQAPSDYPEVVEFLVEEGIDSISLNPD 768 (782)
T ss_pred CCchhhcccCCCCCHHHHHHHHHHHHHHHhcC--CeEEEeCCCCCCCHHHHHHHHHcCCCEEEECcc
Confidence 1 22356677889998988888877655 45666653 2689999999999999999864
No 361
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=95.57 E-value=0.91 Score=37.98 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=95.3
Q ss_pred HHHHhccCC--CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEEc--
Q 029661 15 VVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVLN-- 82 (190)
Q Consensus 15 ~v~~i~~~~--~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i~-- 82 (190)
.++++.+.. ++|+-+||==....+.+..+.++|.+.|-+=+...+. ++ -.++++.++..|..+ |-.=.
T Consensus 66 ~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~e 145 (285)
T PRK07709 66 MVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQE 145 (285)
T ss_pred HHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCcc
Confidence 455554433 3799999855444557788999999999885443221 22 356777888877655 22211
Q ss_pred --------CCCCHHHHHHhhcc--cceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--ccc
Q 029661 83 --------PATSLSAIECVLDV--VDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKN 148 (190)
Q Consensus 83 --------p~t~~~~~~~~~~~--~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~ 148 (190)
.-|..+..+++.+. +|.+.+ -++| |.... -..--+++|+++++.. ++++..=||-. .+.
T Consensus 146 d~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~H-G~Y~~-~p~L~~~~L~~I~~~~-----~iPLVLHGgSG~~~e~ 218 (285)
T PRK07709 146 DDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVH-GPYKG-EPNLGFAEMEQVRDFT-----GVPLVLHGGTGIPTAD 218 (285)
T ss_pred CCcccccccCCCHHHHHHHHHHhCCCEEEEeecccc-cCcCC-CCccCHHHHHHHHHHH-----CCCEEEeCCCCCCHHH
Confidence 13677778888764 787643 3344 22211 1123367777777654 37888888766 589
Q ss_pred HHHHHHcCCCEEEEcccccC
Q 029661 149 AYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 149 ~~~~~~aGad~~VvGsaI~~ 168 (190)
++++++.|+.-+=++|.+..
T Consensus 219 ~~~ai~~Gi~KiNi~T~l~~ 238 (285)
T PRK07709 219 IEKAISLGTSKINVNTENQI 238 (285)
T ss_pred HHHHHHcCCeEEEeChHHHH
Confidence 99999999999999998754
No 362
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.54 E-value=0.54 Score=39.31 Aligned_cols=146 Identities=15% Similarity=0.220 Sum_probs=94.5
Q ss_pred HHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE------
Q 029661 16 VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL------ 81 (190)
Q Consensus 16 v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i------ 81 (190)
++.+.+...+|+.+||==..-.+.+..+.++|.+.|-+=....+. ++ -.++++.++..|+.+ |-.=
T Consensus 66 ~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~ 145 (284)
T PRK12857 66 VRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDI 145 (284)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCC
Confidence 344444467899999854433457888999999999885443221 22 356777788877655 2210
Q ss_pred --cC----CCCHHHHHHhhc--ccceEEE--EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--cccH
Q 029661 82 --NP----ATSLSAIECVLD--VVDLVLI--MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNA 149 (190)
Q Consensus 82 --~p----~t~~~~~~~~~~--~~d~i~~--m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~ 149 (190)
.. -|..+..+++.+ .+|.+.+ -++|-.+.+. ..-.+++++++++.+ ++++..=||-. .+.+
T Consensus 146 ~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~--p~Ld~~~L~~i~~~~-----~vPLVlHGgSG~~~e~~ 218 (284)
T PRK12857 146 TVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGE--PKLDFDRLAKIKELV-----NIPIVLHGSSGVPDEAI 218 (284)
T ss_pred CcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCC--CcCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHH
Confidence 11 356677777765 4786542 3344222221 123477777777765 36788777655 6899
Q ss_pred HHHHHcCCCEEEEcccccC
Q 029661 150 YKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 150 ~~~~~aGad~~VvGsaI~~ 168 (190)
+++++.|..-+=++|.+..
T Consensus 219 ~~ai~~Gi~KiNi~T~~~~ 237 (284)
T PRK12857 219 RKAISLGVRKVNIDTNIRE 237 (284)
T ss_pred HHHHHcCCeEEEeCcHHHH
Confidence 9999999999999998764
No 363
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.53 E-value=0.45 Score=35.14 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCC-CCeEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhh
Q 029661 122 ISDLRRMCLEKGV-NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 183 (190)
Q Consensus 122 i~~~~~~~~~~~~-~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~ 183 (190)
++++.+.+.+.+. ++.+.+.|.+-.+...++.++|+|.++- ...++.+.++.+.+.+
T Consensus 70 ~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~-----~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 70 VPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFG-----PGTPIPESAIFLLKKL 127 (132)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEEC-----CCCCHHHHHHHHHHHH
Confidence 3344444434333 4667676667778899999999987652 2357888888877754
No 364
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=95.50 E-value=0.26 Score=40.77 Aligned_cols=114 Identities=14% Similarity=0.226 Sum_probs=71.7
Q ss_pred HHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEE---EE--cCCCCHHHHHHhhc----
Q 029661 39 RVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGV---VL--NPATSLSAIECVLD---- 95 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~---~i--~p~t~~~~~~~~~~---- 95 (190)
.++.+.++|++.+.+-.-+. ..+.+.+.++.+|++|.++.+ .. .+.++.+.+.+++.
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~ 162 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAE 162 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHh
Confidence 56778999999887732110 022456788899999998866 22 12345555555442
Q ss_pred -ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661 96 -VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 96 -~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~ 160 (190)
.+|.|.+ +.+.|...+..+.+.++.+|+.+++ .+|++ |-|....|.-..+++||+.+
T Consensus 163 ~g~~~i~l----~DT~G~~~P~~v~~lv~~l~~~~~~----~~l~~H~Hnd~Gla~An~laA~~aGa~~i 224 (273)
T cd07941 163 AGADWLVL----CDTNGGTLPHEIAEIVKEVRERLPG----VPLGIHAHNDSGLAVANSLAAVEAGATQV 224 (273)
T ss_pred CCCCEEEE----ecCCCCCCHHHHHHHHHHHHHhCCC----CeeEEEecCCCCcHHHHHHHHHHcCCCEE
Confidence 2566543 3445655566667777777776542 34543 45666667778889999965
No 365
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=95.49 E-value=0.14 Score=43.44 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=50.4
Q ss_pred HHHHHhccCCCCcEEEEEeec--Ch-HHHHHHHHHcCCCEEEEccc---CCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661 14 LVVDALRPVTDLPLDVHLMIV--EP-EQRVPDFIKAGADIVSVHCE---QSSTIHLHRTLNQIKDLGAKAGVVLNPATS 86 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~--dp-~~~i~~~~~~Gad~v~vh~e---~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~ 86 (190)
+.++.||+-.+..+++||.+. .+ ++-++.+.++|-|=|-||+- +...+...+.++.++++|+.+|+-+. .+|
T Consensus 98 ~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~EiP-aip 175 (353)
T COG2108 98 EYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEIP-AIP 175 (353)
T ss_pred HHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeecC-CCc
Confidence 345666665677899999993 44 45688999999999999982 11122233455556699999999874 444
No 366
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.48 E-value=0.68 Score=38.92 Aligned_cols=142 Identities=12% Similarity=0.122 Sum_probs=83.0
Q ss_pred HHHHHhccCCCCcEEEEEeec--ChH---HHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCC
Q 029661 14 LVVDALRPVTDLPLDVHLMIV--EPE---QRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGA 75 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~--dp~---~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~ 75 (190)
..+++|...+++|+.+|.=+- ++. +.++.+.++|+-+|++---.. +.++..+-|+++++.--
T Consensus 67 ~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~ 146 (294)
T TIGR02319 67 INAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARE 146 (294)
T ss_pred HHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhcc
Confidence 455666666889999998873 443 358899999999998832110 12223344444554322
Q ss_pred cEEEEEcCCCC----------HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE-EEeCC
Q 029661 76 KAGVVLNPATS----------LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI-EVDGG 143 (190)
Q Consensus 76 ~~g~~i~p~t~----------~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i-~vdGG 143 (190)
..-+.|+--|+ +++.+.|.+ .+|.|.+ ||. ...+.++++.+.++. .+.. .+.||
T Consensus 147 ~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi----~~~-------~~~~ei~~~~~~~~~---P~~~nv~~~~ 212 (294)
T TIGR02319 147 DEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFL----EAM-------LDVEEMKRVRDEIDA---PLLANMVEGG 212 (294)
T ss_pred CCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEe----cCC-------CCHHHHHHHHHhcCC---CeeEEEEecC
Confidence 23344432222 345555554 3788864 332 123445555554421 1211 24455
Q ss_pred CCc-ccHHHHHHcCCCEEEEcccccCC
Q 029661 144 VGP-KNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 144 I~~-e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
-++ -++.++.+.|++.++.|...+.+
T Consensus 213 ~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 213 KTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred CCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 554 68999999999999999887764
No 367
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.47 E-value=0.26 Score=35.36 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=65.2
Q ss_pred EEEEcCCCCHHHHHHhhcccceEEEEeeecCCC-CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC
Q 029661 78 GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG 156 (190)
Q Consensus 78 g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG 156 (190)
|+.+.++++++.+...++..+.|.+ --|.|. |..| +..|.+....++.-+|=+.|-+-.+++.-+..+|
T Consensus 1 gv~l~~d~~~~~l~~~L~~l~lI~i--~FP~F~DGRgf--------S~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~G 70 (110)
T PF06073_consen 1 GVWLAPDDDPEELADDLDRLPLIAI--DFPKFTDGRGF--------SQARLLRERYGYTGELRAVGDVLRDQLFYLRRCG 70 (110)
T ss_pred CeecCCCCCHHHHHhhccCCCEEEE--ECCCcCCchHh--------HHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcC
Confidence 5788999999989888887777754 247774 6554 2223333345667789999999999999999999
Q ss_pred CCEEEEcccccCCCCHHHHHHHHHH
Q 029661 157 ANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 157 ad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
.|.+.+-. ..+++.+.+.+..
T Consensus 71 Fdsf~l~~----~~~~~~~~~~l~~ 91 (110)
T PF06073_consen 71 FDSFELRE----DQDPEDALAALSD 91 (110)
T ss_pred CCEEEeCC----CCCHHHHHHHHhh
Confidence 99998653 3566666565543
No 368
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=95.45 E-value=0.27 Score=38.84 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=80.7
Q ss_pred CCCCHHHHHHhccC-CCCcEEEEEeecChH---------HHHHHHHHcCCCEEEEcccCCC-----cchHHHHHHHHHHh
Q 029661 9 ITIGPLVVDALRPV-TDLPLDVHLMIVEPE---------QRVPDFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDL 73 (190)
Q Consensus 9 ~~~G~~~v~~i~~~-~~~~i~~hlmv~dp~---------~~i~~~~~~Gad~v~vh~e~~~-----~~~~~~~i~~i~~~ 73 (190)
+...|..++..++. .+..+.++.-+.-|. .-++.+.+.|||-+-++...+. .+...+.+..+++.
T Consensus 34 v~v~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~ 113 (203)
T cd00959 34 VCVNPCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEA 113 (203)
T ss_pred EEEcHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHh
Confidence 33446667766553 334556665554341 2367789999999999754320 12233344444443
Q ss_pred --CCcEEEEEc--CCCCHHHHHHhh---c--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661 74 --GAKAGVVLN--PATSLSAIECVL---D--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 144 (190)
Q Consensus 74 --g~~~g~~i~--p~t~~~~~~~~~---~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI 144 (190)
|+.+-+.+. .-+ .+.+.... - .+|+|=. ..|+.. ...+++.++.+++..+ ..++|-+.|||
T Consensus 114 ~~g~~lkvI~e~~~l~-~~~i~~a~ria~e~GaD~IKT---sTG~~~---~~at~~~v~~~~~~~~---~~v~ik~aGGi 183 (203)
T cd00959 114 CGGAPLKVILETGLLT-DEEIIKACEIAIEAGADFIKT---STGFGP---GGATVEDVKLMKEAVG---GRVGVKAAGGI 183 (203)
T ss_pred cCCCeEEEEEecCCCC-HHHHHHHHHHHHHhCCCEEEc---CCCCCC---CCCCHHHHHHHHHHhC---CCceEEEeCCC
Confidence 433333222 222 22222222 1 2788742 234432 3456777777777665 24789999999
Q ss_pred C-cccHHHHHHcCCCEE
Q 029661 145 G-PKNAYKVIEAGANAL 160 (190)
Q Consensus 145 ~-~e~~~~~~~aGad~~ 160 (190)
+ .+.+.+++++|+|-+
T Consensus 184 kt~~~~l~~~~~g~~ri 200 (203)
T cd00959 184 RTLEDALAMIEAGATRI 200 (203)
T ss_pred CCHHHHHHHHHhChhhc
Confidence 9 688889999998854
No 369
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=95.43 E-value=0.3 Score=43.98 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=60.4
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC-CCCHHHHHH
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP-ATSLSAIEC 92 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p-~t~~~~~~~ 92 (190)
..|+.+++.++.|+-+|. .+|. .++.+.++|||+|.=- . ..+..+.+..++++|..+.+.-.. ....+.+.+
T Consensus 198 ~~V~~l~~~~~~pISIDT--~~~~-v~eaAL~aGAdiINsV-s---~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~ 270 (499)
T TIGR00284 198 EKVKTALDALDSPVIADT--PTLD-ELYEALKAGASGVIMP-D---VENAVELASEKKLPEDAFVVVPGNQPTNYEELAK 270 (499)
T ss_pred HHHHHHHhhCCCcEEEeC--CCHH-HHHHHHHcCCCEEEEC-C---ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHH
Confidence 456666766677877754 4444 5667788899988732 2 224556778788888877554322 222344444
Q ss_pred hhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHH
Q 029661 93 VLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMC 129 (190)
Q Consensus 93 ~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~ 129 (190)
.++. ++.|+ ++||.+-+.+ ..++.|.+++.+.
T Consensus 271 ~ie~a~~~Gi~~II---lDPglg~~~~--~l~~sL~~l~~~r 307 (499)
T TIGR00284 271 AVKKLRTSGYSKVA---ADPSLSPPLL--GLLESIIRFRRAS 307 (499)
T ss_pred HHHHHHHCCCCcEE---EeCCCCcchH--HHHHHHHHHHHHH
Confidence 3322 33333 4899874433 3455566665543
No 370
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.43 E-value=0.33 Score=41.33 Aligned_cols=126 Identities=19% Similarity=0.243 Sum_probs=68.7
Q ss_pred CCcEEEEEee--cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCC-CCHHHHHHhhc-ccce
Q 029661 24 DLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD-VVDL 99 (190)
Q Consensus 24 ~~~i~~hlmv--~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~-t~~~~~~~~~~-~~d~ 99 (190)
+.|+..-=|. .++ .+...++++|.=.++ |.+. +.+...+.++.+|+ ...++..+.+. ...+.++.+++ .+|.
T Consensus 34 ~~Piv~apM~~vt~~-~ma~ava~~GglGvi-~~~~-~~~~~~~~i~~vk~-~l~v~~~~~~~~~~~~~~~~l~eagv~~ 109 (325)
T cd00381 34 NIPLVSAPMDTVTES-EMAIAMARLGGIGVI-HRNM-SIEEQAEEVRKVKG-RLLVGAAVGTREDDKERAEALVEAGVDV 109 (325)
T ss_pred CCCEEecCCCcCCcH-HHHHHHHHCCCEEEE-eCCC-CHHHHHHHHHHhcc-CceEEEecCCChhHHHHHHHHHhcCCCE
Confidence 3465543343 233 355667888875554 4443 23334444444442 22333444332 11345555554 3777
Q ss_pred EEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc
Q 029661 100 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 163 (190)
Q Consensus 100 i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG 163 (190)
|.+ +... |. .+...+.++++|+..+ +.++.+....+.+.+..+.++|||++++|
T Consensus 110 I~v---d~~~-G~--~~~~~~~i~~ik~~~p----~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 110 IVI---DSAH-GH--SVYVIEMIKFIKKKYP----NVDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred EEE---ECCC-CC--cHHHHHHHHHHHHHCC----CceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 654 3222 21 1445666777776532 35665544455799999999999999984
No 371
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.43 E-value=0.31 Score=41.57 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=71.7
Q ss_pred CcEEEEEeecCh-HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC-HHHHHHhhcc---cce
Q 029661 25 LPLDVHLMIVEP-EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-LSAIECVLDV---VDL 99 (190)
Q Consensus 25 ~~i~~hlmv~dp-~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-~~~~~~~~~~---~d~ 99 (190)
.||..-=|.... .++.+.+.+.|.-.+. |-- +.+....+.+..+..+..+++++..... .+++.++++. +|.
T Consensus 38 ~P~~inAM~t~iN~~LA~~a~~~G~~~~~-~k~--~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~ 114 (326)
T PRK05458 38 LPVVPANMQTIIDEKIAEWLAENGYFYIM-HRF--DPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEY 114 (326)
T ss_pred CcEEEecccchhHHHHHHHHHHcCCEEEE-ecC--CHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCE
Confidence 455554454332 2345556777744444 432 1333344444444446666666664322 3566666663 388
Q ss_pred EEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEc
Q 029661 100 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 163 (190)
Q Consensus 100 i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvG 163 (190)
|.+=+.+ | ......+.|+++|+..++ .++ +.|.+. .+.+..+.++|+|++.+|
T Consensus 115 i~iD~a~----g--h~~~~~e~I~~ir~~~p~----~~v-i~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 115 ITIDIAH----G--HSDSVINMIQHIKKHLPE----TFV-IAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred EEEECCC----C--chHHHHHHHHHHHhhCCC----CeE-EEEecCCHHHHHHHHHcCcCEEEEC
Confidence 8764444 1 123455567777776542 333 555455 899999999999999877
No 372
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=95.42 E-value=0.14 Score=41.61 Aligned_cols=140 Identities=19% Similarity=0.278 Sum_probs=80.9
Q ss_pred HHHHHhccCCCCcEEEEEeec--C-hH---HHHHHHHHcCCCEEEEccc-CC-------CcchHHHHHHHHHHhCCcEEE
Q 029661 14 LVVDALRPVTDLPLDVHLMIV--E-PE---QRVPDFIKAGADIVSVHCE-QS-------STIHLHRTLNQIKDLGAKAGV 79 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~--d-p~---~~i~~~~~~Gad~v~vh~e-~~-------~~~~~~~~i~~i~~~g~~~g~ 79 (190)
..++.|...+++|+.+|+=+- | |. +.++.+.++|+.++++--- .+ +.++..+-|+++++.-...++
T Consensus 59 ~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~ 138 (238)
T PF13714_consen 59 AAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDF 138 (238)
T ss_dssp HHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTS
T ss_pred HHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeE
Confidence 456666666899999999883 4 64 4578899999999988432 00 122333444444443222225
Q ss_pred EEcCCCCH------------HHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc
Q 029661 80 VLNPATSL------------SAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 146 (190)
Q Consensus 80 ~i~p~t~~------------~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~ 146 (190)
+|+-.|+. ++.+.|.+ .+|.|.+ ||. ...+.++++.+.++ .++.+-.+=..
T Consensus 139 ~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi----~~~-------~~~~~i~~~~~~~~-----~Pl~v~~~~~~ 202 (238)
T PF13714_consen 139 VIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFI----PGL-------QSEEEIERIVKAVD-----GPLNVNPGPGT 202 (238)
T ss_dssp EEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEE----TTS-------SSHHHHHHHHHHHS-----SEEEEETTSSS
T ss_pred EEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEe----CCC-------CCHHHHHHHHHhcC-----CCEEEEcCCCC
Confidence 55534432 34444444 3787764 443 12333555555442 45665554224
Q ss_pred ccHHHHHHcCCCEEEEcccccCC
Q 029661 147 KNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 147 e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
-++.++.+.|+..+..|+..+.+
T Consensus 203 ~~~~eL~~lGv~~v~~~~~~~~a 225 (238)
T PF13714_consen 203 LSAEELAELGVKRVSYGNSLLRA 225 (238)
T ss_dssp S-HHHHHHTTESEEEETSHHHHH
T ss_pred CCHHHHHHCCCcEEEEcHHHHHH
Confidence 78889999999999999887763
No 373
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.41 E-value=0.067 Score=42.52 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=45.8
Q ss_pred CHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHcCCCEEEEc
Q 029661 86 SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAG 163 (190)
Q Consensus 86 ~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~aGad~~VvG 163 (190)
+.+..+.+.+. ++.+-+.+. ++..+. .++.++.+|+.. +.+|.+.|++.. +.+..+.++|||.+++|
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~-~~~~~g-----~~~~~~~i~~~v-----~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~ 101 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTE-PKYFQG-----SLEDLRAVREAV-----SLPVLRKDFIIDPYQIYEARAAGADAVLLI 101 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeC-ccccCC-----CHHHHHHHHHhc-----CCCEEECCeecCHHHHHHHHHcCCCEEEEe
Confidence 44455555443 677755443 343322 234455555543 367887777774 58999999999999999
Q ss_pred ccccC
Q 029661 164 SAVFG 168 (190)
Q Consensus 164 saI~~ 168 (190)
.....
T Consensus 102 ~~~~~ 106 (217)
T cd00331 102 VAALD 106 (217)
T ss_pred eccCC
Confidence 87665
No 374
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=95.38 E-value=0.56 Score=37.69 Aligned_cols=164 Identities=14% Similarity=0.227 Sum_probs=102.1
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------------CcchHHHHHHHHHHhCCcEEEEE
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVVL 81 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------------~~~~~~~~i~~i~~~g~~~g~~i 81 (190)
-+..||+..+.++..-+-+. +++++.+.+...+.||+-+|.- ...-+..+++.+++.|+++.+++
T Consensus 54 Dv~~lr~~~~~~~NlE~a~t--eEml~ia~~~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFi 131 (243)
T COG0854 54 DVRILRALIDTRFNLEMAPT--EEMLAIALKTKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFI 131 (243)
T ss_pred hHHHHHHHcccceecccCch--HHHHHHHHhcCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEe
Confidence 34555554444544432222 3457788899999999976531 01236788999999999999999
Q ss_pred cCCCC-HHHHHHhhcccceEEEEeeecCCCCcccc---h-h---hHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHH
Q 029661 82 NPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSFI---E-S---QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI 153 (190)
Q Consensus 82 ~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~~---~-~---~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~ 153 (190)
.|+-. ++..... .+|+|-+ +.|..+.... + . .++++++..++-.+ ..+.+..+=|+|-.|++.+.
T Consensus 132 D~d~~qi~aa~~~--gA~~IEL---hTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~--lGL~VnAGHgLty~Nv~~~a 204 (243)
T COG0854 132 DPDPEQIEAAAEV--GAPRIEL---HTGPYADAHDAAEQARADAELERLAKAAKLAAE--LGLKVNAGHGLTYHNVKPLA 204 (243)
T ss_pred CCCHHHHHHHHHh--CCCEEEE---ecccccccCChHHHHHHHHHHHHHHHHHHHHHH--cCceEecCCCccccchHHHh
Confidence 97532 3333332 5889876 4454443333 1 1 34455555444433 34677888899999999876
Q ss_pred HcC-CCEEEEcccccCC---CCHHHHHHHHHHhhcccc
Q 029661 154 EAG-ANALVAGSAVFGA---KDYAEAIKGIKTSKRPQA 187 (190)
Q Consensus 154 ~aG-ad~~VvGsaI~~~---~dp~~~~~~l~~~~~~~~ 187 (190)
+.- ..-+=+|-+|... --..++++++++.++..+
T Consensus 205 ~~~~i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~~~ 242 (243)
T COG0854 205 AIPPLAELNIGHSIIARAVFVGLEEAVREMKRLMKRAR 242 (243)
T ss_pred cCCcceeecccHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 543 3334557666543 356788888888776544
No 375
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=95.37 E-value=0.14 Score=48.73 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=83.5
Q ss_pred HHHHHH-cCCCE--EEEcccCCCcchHHHHHHHHHHhCC-------cEEEEEcCCCCHHHHHHhhcccceEEEEeee---
Q 029661 40 VPDFIK-AGADI--VSVHCEQSSTIHLHRTLNQIKDLGA-------KAGVVLNPATSLSAIECVLDVVDLVLIMSVN--- 106 (190)
Q Consensus 40 i~~~~~-~Gad~--v~vh~e~~~~~~~~~~i~~i~~~g~-------~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~--- 106 (190)
+..+.+ .|++. |.++.-. +.++..++.+.++..|. .+|+.+....-+..+.+++..+|.+.+-+-+
T Consensus 626 I~rald~~G~~~~~ImvPmV~-s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtnDLtq 704 (795)
T PRK06464 626 IKRVREEMGLTNVEVMIPFVR-TVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSNDLTQ 704 (795)
T ss_pred HHHHHHhcCCCCeEEEecCCC-CHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECchHHHH
Confidence 334556 68877 6676544 35677778888876543 3566665444467788888779988763221
Q ss_pred --c---------CCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeC---CCCcccHHHHHHcCCCEEEEccc
Q 029661 107 --P---------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG---GVGPKNAYKVIEAGANALVAGSA 165 (190)
Q Consensus 107 --p---------G~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdG---GI~~e~~~~~~~aGad~~VvGsa 165 (190)
- +..++...|..++.|+++.+-..+++ .++.+-| |-+++.++.+++.|++.+.+++.
T Consensus 705 ~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g--~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d 775 (795)
T PRK06464 705 LTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAG--KYVGICGQAPSDHPDFAEWLVEEGIDSISLNPD 775 (795)
T ss_pred HHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcC--CEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcch
Confidence 1 12355667888888888888776654 4566655 33488999999999999999963
No 376
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=95.35 E-value=0.51 Score=38.41 Aligned_cols=127 Identities=17% Similarity=0.321 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHcCCCEEEEcccCCCcchH-HHHHHHHHHh-CCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeeecC---
Q 029661 35 EPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG--- 108 (190)
Q Consensus 35 dp~~~i~~~~~~Gad~v~vh~e~~~~~~~-~~~i~~i~~~-g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG--- 108 (190)
||-.....+..+|||+||+|.-- +..++ .+-+..+++. ..+.-+-.+|..+. +.-.++ ..|++.+..-.+.
T Consensus 23 dpv~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~--~~ia~~~kP~~vtLVPE~r~e~T 99 (239)
T PF03740_consen 23 DPVEAARIAEEAGADGITVHLRE-DRRHIQDRDVRRLRELVKTPLNLEMAPTEEM--VDIALKVKPDQVTLVPEKREELT 99 (239)
T ss_dssp -HHHHHHHHHHTT-SEEEEEB-T-T-SSS-HHHHHHHHHH-SSEEEEEEESSHHH--HHHHHHH--SEEEEE--SGGGBS
T ss_pred CHHHHHHHHHHcCCCEEEeccCC-CcCcCCHHHHHHHHHHcccCEEeccCCCHHH--HHHHHhCCcCEEEECCCCCCCcC
Confidence 56677778899999999999763 22232 2334444442 34455555554332 222222 3688877543221
Q ss_pred C-CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661 109 F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 109 ~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~ 167 (190)
+ +|-.+. .-.++++.+.+.+.+.|..+.+=+|.. ++.++...+.|||.+=.=+.=|
T Consensus 100 TegGldv~-~~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELhTG~y 156 (239)
T PF03740_consen 100 TEGGLDVA-GNRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELHTGPY 156 (239)
T ss_dssp TTSSB-TC-GGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEETHHH
T ss_pred CCcCChhh-cCHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEehhHh
Confidence 1 232222 235666766666666665555556665 6889999999999998876544
No 377
>PRK01362 putative translaldolase; Provisional
Probab=95.33 E-value=1.2 Score=35.77 Aligned_cols=159 Identities=15% Similarity=0.149 Sum_probs=93.9
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHH---HHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPD---FIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 89 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~ 89 (190)
+.+++|++..+-++.+-..-.|.+..+++ +.+.+-+.++ ++. ...=-+.++.+++.|+++-+..-- +..+.
T Consensus 41 ~~~~~i~~~i~g~vs~qv~~~d~~~m~~~a~~l~~~~~~i~iKIP~----T~~G~~a~~~L~~~Gi~v~~T~vf-s~~Qa 115 (214)
T PRK01362 41 EVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKIAPNVVVKIPM----TPEGLKAVKALSKEGIKTNVTLIF-SANQA 115 (214)
T ss_pred HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEeCC----CHHHHHHHHHHHHCCCceEEeeec-CHHHH
Confidence 45556665544455555544566655443 4444544333 332 122345677777788887664421 22222
Q ss_pred HHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC-
Q 029661 90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG- 168 (190)
Q Consensus 90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~- 168 (190)
+.-....++||.. .-|--.. .....++.++++++++..++++..|-+..=-|.+++.++..+|+|.+-++-.+++
T Consensus 116 ~~Aa~aGa~yisp---yvgRi~d-~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~ 191 (214)
T PRK01362 116 LLAAKAGATYVSP---FVGRLDD-IGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQ 191 (214)
T ss_pred HHHHhcCCcEEEe---ecchHhh-cCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHHHH
Confidence 2222335777743 2222111 1223467788888888877778888666555689999999999999999977664
Q ss_pred ---CCCHHHHHHHHHH
Q 029661 169 ---AKDYAEAIKGIKT 181 (190)
Q Consensus 169 ---~~dp~~~~~~l~~ 181 (190)
.+-..++++.+.+
T Consensus 192 l~~~p~t~~~~~~F~~ 207 (214)
T PRK01362 192 LFKHPLTDKGLEKFLA 207 (214)
T ss_pred HHcCCchHHHHHHHHH
Confidence 4555677777654
No 378
>PRK15447 putative protease; Provisional
Probab=95.30 E-value=0.37 Score=40.49 Aligned_cols=114 Identities=9% Similarity=-0.049 Sum_probs=75.3
Q ss_pred cChHHHHHHHHHcCCCEEEEcccC------CCcchHHHHHHHHHHhCCcEEEEEcCC-C-C--HHHHHHhhcc-cceEEE
Q 029661 34 VEPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPA-T-S--LSAIECVLDV-VDLVLI 102 (190)
Q Consensus 34 ~dp~~~i~~~~~~Gad~v~vh~e~------~~~~~~~~~i~~i~~~g~~~g~~i~p~-t-~--~~~~~~~~~~-~d~i~~ 102 (190)
.+.+.|...+.+.|||.|.+..+. -+.+++.+.++.++++|+++.++++.- . + .+.+.++++. .|.|++
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 455678888889999999997432 124678999999999999999987643 2 2 3345555443 232221
Q ss_pred EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc---ccHHHHHHcCCCEEEEccccc
Q 029661 103 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP---KNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 103 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~---e~~~~~~~aGad~~VvGsaI~ 167 (190)
-+ ... +..+++. +.++.+|-.+|. .++.-+.+.|++-+++..-+-
T Consensus 95 --~d---------~g~---l~~~~e~------~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 95 --ND---------LGA---VRLLAER------GLPFVAGPALNCYNAATLALLARLGATRWCMPVELS 142 (301)
T ss_pred --eC---------HHH---HHHHHhc------CCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCC
Confidence 11 122 3333331 256888888874 566778899999988876554
No 379
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=95.28 E-value=0.88 Score=38.71 Aligned_cols=141 Identities=13% Similarity=0.092 Sum_probs=90.3
Q ss_pred CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE----EEEE--------cC--CC
Q 029661 24 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA----GVVL--------NP--AT 85 (190)
Q Consensus 24 ~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~----g~~i--------~p--~t 85 (190)
.+|+.+||==..-.+.+..+.++|.+.|-+=....+. ++ -.++++.++.+|+.+ |-.- .. -|
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T 164 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYT 164 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccC
Confidence 6899999855544557889999999999885443221 22 356777888877655 2210 11 35
Q ss_pred CHHHHHHhhc--ccceEEE--EeeecCCCC-cc--cchhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------------
Q 029661 86 SLSAIECVLD--VVDLVLI--MSVNPGFGG-QS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-------------- 144 (190)
Q Consensus 86 ~~~~~~~~~~--~~d~i~~--m~v~pG~~g-q~--~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-------------- 144 (190)
..+...++++ .+|.+.+ -++|--+.+ +. -..--+++++++++.++ ++++..=||-
T Consensus 165 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~----~vPLVLHGgSg~~~~~~~~~~~~g 240 (321)
T PRK07084 165 QPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP----GFPIVLHGSSSVPQEYVKTINEYG 240 (321)
T ss_pred CHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC----CCCEEEeCCCCCcHHHHHHHHHhc
Confidence 6777777776 3786542 333411111 00 11234778888877763 3677766655
Q ss_pred ---------CcccHHHHHHcCCCEEEEcccccC
Q 029661 145 ---------GPKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 145 ---------~~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
..|.++++++.|+.-|=++|.+..
T Consensus 241 ~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~ 273 (321)
T PRK07084 241 GKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRL 273 (321)
T ss_pred CccccCCCCCHHHHHHHHHcCCceeccchHHHH
Confidence 468999999999999999998754
No 380
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=95.27 E-value=1.4 Score=36.35 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=82.7
Q ss_pred CccccCcCCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcch--------HHHHHHHHHHh
Q 029661 2 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH--------LHRTLNQIKDL 73 (190)
Q Consensus 2 Dg~fvpn~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~--------~~~~i~~i~~~ 73 (190)
||.+.||..|+.+...+| .+.+.++|+|.|=+..-+.+..+ ..+.++.+.+.
T Consensus 8 DG~q~~~~~f~~~~~~~i--------------------a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (266)
T cd07944 8 DGGYVNNWDFGDEFVKAI--------------------YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGD 67 (266)
T ss_pred cCccccCccCCHHHHHHH--------------------HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhh
Confidence 888899988888766544 45567778888766422111111 13445555443
Q ss_pred ---CCcEEEEEcCCC-CHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCe--EEEeCCCCc
Q 029661 74 ---GAKAGVVLNPAT-SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW--IEVDGGVGP 146 (190)
Q Consensus 74 ---g~~~g~~i~p~t-~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~--i~vdGGI~~ 146 (190)
+.++...+.+.. ..+.+....+. +|.|-+ + + ....++++.+.-++.++++..+. ++-..+.++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri-~----~-----~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~ 137 (266)
T cd07944 68 SKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRV-A----F-----HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSD 137 (266)
T ss_pred hccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEE-e----c-----ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCH
Confidence 567777776653 45666665543 666533 1 1 11235555555555555554333 334466665
Q ss_pred c----cHHHHHHcCCCEEEEc-cc-ccCCCCHHHHHHHHHHhh
Q 029661 147 K----NAYKVIEAGANALVAG-SA-VFGAKDYAEAIKGIKTSK 183 (190)
Q Consensus 147 e----~~~~~~~aGad~~VvG-sa-I~~~~dp~~~~~~l~~~~ 183 (190)
+ .++.+.++|+|.+.+. |. +..-.+..+.++.+++.+
T Consensus 138 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 138 EELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhc
Confidence 4 4556678899988665 22 222223334445555444
No 381
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.26 E-value=0.18 Score=41.15 Aligned_cols=140 Identities=13% Similarity=0.164 Sum_probs=79.1
Q ss_pred HHHHHhccCCCCcEEEEEee--cChH---HHHHHHHHcCCCEEEE--------cc---cC--CCcchHHHHHHHHHHh--
Q 029661 14 LVVDALRPVTDLPLDVHLMI--VEPE---QRVPDFIKAGADIVSV--------HC---EQ--SSTIHLHRTLNQIKDL-- 73 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv--~dp~---~~i~~~~~~Gad~v~v--------h~---e~--~~~~~~~~~i~~i~~~-- 73 (190)
..++.|.+.++.|+.+|+-. .++. +.++.+.++|+++|.+ .. +. .+.++..+-++++++.
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 44555666678899999877 2443 3477888999999999 11 00 0233344455555552
Q ss_pred C-CcEEEEEc-----CC-CC----HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE-
Q 029661 74 G-AKAGVVLN-----PA-TS----LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV- 140 (190)
Q Consensus 74 g-~~~g~~i~-----p~-t~----~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v- 140 (190)
+ .++.+... .. .. +++.+.|.+. +|.+.+.+.. ..+.++++.+.. +.++.+
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------~~~~~~~~~~~~-----~~Pl~~~ 202 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRAFAEAP-----DVPLNVN 202 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHhcC-----CCCEEEE
Confidence 3 23333322 11 12 3455566654 8988763222 223344444332 234333
Q ss_pred -eCCCCcccHHHHHHcCCCEEEEcccccCC
Q 029661 141 -DGGVGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 141 -dGGI~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
.++-+.-+..++.+.|++.++.|+..+.+
T Consensus 203 ~~~~~~~~~~~~l~~lG~~~v~~~~~~~~~ 232 (243)
T cd00377 203 MTPGGNLLTVAELAELGVRRVSYGLALLRA 232 (243)
T ss_pred ecCCCCCCCHHHHHHCCCeEEEEChHHHHH
Confidence 22222257788888999999999877663
No 382
>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=95.19 E-value=0.026 Score=44.33 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=40.8
Q ss_pred eEEEeCCCCcccHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHhhcccc
Q 029661 137 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY-AEAIKGIKTSKRPQA 187 (190)
Q Consensus 137 ~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp-~~~~~~l~~~~~~~~ 187 (190)
-++|.||||.+|.....+-||.-+||-|.+|+.... .+.++.+-+.+.+.|
T Consensus 84 ~LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g~fdL~RLk~i~s~~GKdR 135 (263)
T KOG3055|consen 84 GLQVGGGINSENCMSWLEEGASKVIVTSWLFNNGKFDLERLKDIVSIVGKDR 135 (263)
T ss_pred ceeecCccChHHHHHHHHhcCceEEEEEEeccCCcccHHHHHHHHHHhCcce
Confidence 489999999999999999999999999999985432 256666666665544
No 383
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.18 E-value=0.94 Score=35.32 Aligned_cols=161 Identities=16% Similarity=0.205 Sum_probs=90.4
Q ss_pred ccccCcCCCCHHHHHHhccCCC--CcEEEEEee--cChHHH-HH--HHHHcCCCEEEEcccCC-----CcchHHHHHHHH
Q 029661 3 GRFVPNITIGPLVVDALRPVTD--LPLDVHLMI--VEPEQR-VP--DFIKAGADIVSVHCEQS-----STIHLHRTLNQI 70 (190)
Q Consensus 3 g~fvpn~~~G~~~v~~i~~~~~--~~i~~hlmv--~dp~~~-i~--~~~~~Gad~v~vh~e~~-----~~~~~~~~i~~i 70 (190)
|+.--||.+ .|+++|+.++ .++.+.+=- ..|+.. .. -++-+|||++-+..-.. ..+-...+.++.
T Consensus 32 GSLGANFPW---vIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~GaDYiKVGLYg~kn~~eA~e~m~~vvrAV 108 (235)
T COG1891 32 GSLGANFPW---VIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGADYIKVGLYGTKNEEEALEVMKNVVRAV 108 (235)
T ss_pred CcccCCChH---HHHHHHHhCccceeeeeeecCCCCCCchHHHHHHHhHhhCCceEEEeecccccHHHHHHHHHHHHHHH
Confidence 444455544 6777877643 345442211 235543 22 24678999999964310 122344555666
Q ss_pred HHhCC--cEEEE-------EcCCCCHHHHHHhh--cccceEEEEeeecCCCCc-ccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 71 KDLGA--KAGVV-------LNPATSLSAIECVL--DVVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 71 ~~~g~--~~g~~-------i~p~t~~~~~~~~~--~~~d~i~~m~v~pG~~gq-~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
|+.+- ++.-+ ++.-.|+. +-+.. ..+|..++=+-- .+|. .|.-...+.+.+.-+...+++ +..
T Consensus 109 kd~d~~k~VVAaGYaDa~Rvgsv~Pl~-~P~vaa~ag~DvaMvDTai--KDGkslFdfm~~e~l~eFvd~Ah~hG--L~~ 183 (235)
T COG1891 109 KDFDPSKKVVAAGYADAHRVGSVSPLL-LPEVAAEAGADVAMVDTAI--KDGKSLFDFMDEEELEEFVDLAHEHG--LEV 183 (235)
T ss_pred hccCCCceEEeccccchhhccCcCccc-cHHHHHhcCCCEEEEeccc--ccchhHHhhhcHHHHHHHHHHHHHcc--hHH
Confidence 66543 32211 22223332 11222 236877653221 1232 355555666777777666665 456
Q ss_pred EEeCCCCcccHHHHHHcCCCEEEEcccccCCCC
Q 029661 139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171 (190)
Q Consensus 139 ~vdGGI~~e~~~~~~~aGad~~VvGsaI~~~~d 171 (190)
+..|.++.|+++.+.+.|+|++=+-++.....|
T Consensus 184 AlAGs~~~ehlp~l~eig~DivGvRgaaC~~GD 216 (235)
T COG1891 184 ALAGSLKFEHLPILKEIGPDIVGVRGAACEGGD 216 (235)
T ss_pred HhccccccccchHHHHhCCCeeeecchhccCCC
Confidence 789999999999999999998877677665433
No 384
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=95.17 E-value=0.067 Score=43.86 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=77.4
Q ss_pred CHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE----EEEEcCCCCH
Q 029661 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA----GVVLNPATSL 87 (190)
Q Consensus 12 G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~----g~~i~p~t~~ 87 (190)
|.++++++++.++.|+.-++|..+ .++.+.+. +|++=+.+.. ..+ .++++++-+.|+-+ |.+.+|..=+
T Consensus 61 GL~iL~~vk~~~glpvvTeV~~~~---~~~~vae~-vDilQIgArn--~rn-~~LL~a~g~t~kpV~lKrG~~~t~~e~l 133 (258)
T TIGR01362 61 GLKILQKVKEEFGVPILTDVHESS---QCEPVAEV-VDIIQIPAFL--CRQ-TDLLVAAAKTGRIVNVKKGQFLSPWDMK 133 (258)
T ss_pred HHHHHHHHHHHhCCceEEEeCCHH---HHHHHHhh-CcEEEeCchh--cch-HHHHHHHhccCCeEEecCCCcCCHHHHH
Confidence 667788888889999999887654 56677777 8999999874 333 46788777776544 2333332112
Q ss_pred HHHHHhhcc-cceEEEEeeecCCCCcccch--hh--HHHHHHHHHHHhhcCCCCeEEEe---------------CCCCc-
Q 029661 88 SAIECVLDV-VDLVLIMSVNPGFGGQSFIE--SQ--VKKISDLRRMCLEKGVNPWIEVD---------------GGVGP- 146 (190)
Q Consensus 88 ~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~--~~--~~ki~~~~~~~~~~~~~~~i~vd---------------GGI~~- 146 (190)
..++++... -+.|++ .+=|++ |.. .+ +.-+-.+|++ ++++.+| ||.+.
T Consensus 134 ~aaeyi~~~Gn~~viL--cERG~t---f~y~r~~~D~~~ip~~k~~------~~PVi~DpSHsvq~pg~~g~~s~G~r~~ 202 (258)
T TIGR01362 134 NVVEKVLSTGNKNILL--CERGTS---FGYNNLVVDMRSLPIMREL------GCPVIFDATHSVQQPGGLGGASGGLREF 202 (258)
T ss_pred HHHHHHHHcCCCcEEE--EeCCCC---cCCCCcccchhhhHHHHhc------CCCEEEeCCccccCCCCCCCCCCCcHHH
Confidence 223333332 232322 344542 311 11 2223333332 4678877 44442
Q ss_pred --ccHHHHHHcCCCEEEEcc
Q 029661 147 --KNAYKVIEAGANALVAGS 164 (190)
Q Consensus 147 --e~~~~~~~aGad~~VvGs 164 (190)
.-.+..+.+|||++.+=+
T Consensus 203 v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 203 VPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred HHHHHHHHHHhCCCEEEEEe
Confidence 244456889999998765
No 385
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=95.15 E-value=0.5 Score=38.36 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=81.2
Q ss_pred CCCCHHHHHHhccCCCCcEEEEEeec--ChHHHHHHHHHcCCCEEEEcccCCCcchH-HHHHHHHHHh-CCcEEEEEcCC
Q 029661 9 ITIGPLVVDALRPVTDLPLDVHLMIV--EPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPA 84 (190)
Q Consensus 9 ~~~G~~~v~~i~~~~~~~i~~hlmv~--dp~~~i~~~~~~Gad~v~vh~e~~~~~~~-~~~i~~i~~~-g~~~g~~i~p~ 84 (190)
++...+-|.-||+.-+ +. ||-.....+.++|||+||+|.-- +..++ .+-+..+++. ..+.-+-.+|+
T Consensus 2 LgVNIdhVAtLRnaR~--------~~~Pd~v~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~l~~~~~~~lNlE~a~~ 72 (237)
T TIGR00559 2 LGVNVDHIATLRNARG--------TNEPDPLRAALIAEQAGADGITVHLRE-DRRHIQDRDVYDLKEALTTPFNIEMAPT 72 (237)
T ss_pred CccchhhhhhhhhcCC--------CCCCCHHHHHHHHHHcCCCEEEecCCC-CcCcCCHHHHHHHHHHcCCCEEeccCCC
Confidence 3445556666665421 22 45666777899999999999763 23333 2334444442 33444545543
Q ss_pred CCHHHHHHhhc-ccceEEEEeeecC---C-CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCE
Q 029661 85 TSLSAIECVLD-VVDLVLIMSVNPG---F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA 159 (190)
Q Consensus 85 t~~~~~~~~~~-~~d~i~~m~v~pG---~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~ 159 (190)
... +.-.++ ..|++.+..-.+. + +|-.+ ....++++.+.+.+.+.|..+.+=+|.- ++.++...+.|||.
T Consensus 73 ~em--i~ia~~vkP~~vtLVPEkr~ElTTegGldv-~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~GAd~ 147 (237)
T TIGR00559 73 EEM--IRIAEEIKPEQVTLVPEARDEVTTEGGLDV-ARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEVGADR 147 (237)
T ss_pred HHH--HHHHHHcCCCEEEECCCCCCCccCCcCchh-hhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCE
Confidence 322 222222 3688877543332 1 23211 2334566666666666554444444443 67899999999999
Q ss_pred EEEccccc
Q 029661 160 LVAGSAVF 167 (190)
Q Consensus 160 ~VvGsaI~ 167 (190)
+=.=+.=|
T Consensus 148 VELhTG~Y 155 (237)
T TIGR00559 148 IEIHTGPY 155 (237)
T ss_pred EEEechhh
Confidence 98766544
No 386
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=95.12 E-value=0.59 Score=40.58 Aligned_cols=114 Identities=23% Similarity=0.191 Sum_probs=74.0
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc---
Q 029661 37 EQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV--- 96 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~--- 96 (190)
..-++.+.++|++.|.+-... +. +.+.+.++.+++.|.++.+... ..++.+.+.+++..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~-Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIAT-SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 345788899999998885433 12 3456788899999998877543 33556666655532
Q ss_pred --cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661 97 --VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 97 --~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~ 160 (190)
+|.|.+ +.+.|...+.++.+.++.+++.. +.+|++ |-|.-.-|.-..+++||+.+
T Consensus 157 ~Ga~~I~l----~DT~G~~~P~~v~~lv~~l~~~~-----~~~l~~H~Hnd~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 157 AGADRVRF----CDTVGILDPFTMYELVKELVEAV-----DIPIEVHCHNDFGMATANALAGIEAGAKQV 217 (378)
T ss_pred CCCCEEEE----eccCCCCCHHHHHHHHHHHHHhc-----CCeEEEEecCCcCHHHHHHHHHHHcCCCEE
Confidence 566543 34445555666677777777654 245554 44555556677789999976
No 387
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=95.09 E-value=0.84 Score=39.34 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=92.4
Q ss_pred HHHHHhccCCCCcEEEEEeecChH--HHHHHHHHcC-----------CCEEEEcccCCCc-ch---HHHHHHHHHHhCCc
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPE--QRVPDFIKAG-----------ADIVSVHCEQSST-IH---LHRTLNQIKDLGAK 76 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~--~~i~~~~~~G-----------ad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~ 76 (190)
..++.+.+..++|+.+||==.... ++++.+.++| .++|-+=....+. ++ -.++++.++..|+.
T Consensus 89 ~~v~~~Ae~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~Gvs 168 (357)
T TIGR01520 89 HHVHSIAEHYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMW 168 (357)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 355556555688999998554333 5688888886 6777664332111 22 35677777777765
Q ss_pred E----EEE--------E------cCCCCHHHHHHhhc------ccceEE--EEeeecCCCCcccchhhHHHHHHHHHHHh
Q 029661 77 A----GVV--------L------NPATSLSAIECVLD------VVDLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCL 130 (190)
Q Consensus 77 ~----g~~--------i------~p~t~~~~~~~~~~------~~d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~ 130 (190)
+ |-. . ..-|..+..+++.+ .+|.+. +-++| |.....-..-.+++++++++.+.
T Consensus 169 VEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~H-G~Yk~~~p~Ld~d~L~~I~~~~~ 247 (357)
T TIGR01520 169 LEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVH-GVYKPGNVKLTPDILADGQEYVS 247 (357)
T ss_pred EEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeecccc-CCcCCCCCccCHHHHHHHHHHHH
Confidence 4 211 1 11366777777765 457653 34455 32210012233667777765432
Q ss_pred hcCCCCe------EEEeCCCC--cccHHHHHHcCCCEEEEcccccC
Q 029661 131 EKGVNPW------IEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 131 ~~~~~~~------i~vdGGI~--~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
+. .+++ +..=||-. .+.++++++.|..-+=++|.+..
T Consensus 248 ~~-~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~KINi~Tdl~~ 292 (357)
T TIGR01520 248 EK-LGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTDTQW 292 (357)
T ss_pred Hh-cCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHH
Confidence 11 1234 88888766 58999999999999999987754
No 388
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=95.09 E-value=0.54 Score=38.20 Aligned_cols=147 Identities=16% Similarity=0.246 Sum_probs=81.0
Q ss_pred CCCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchH-HHHHHHHHHh-CCcEEEEEcCCCC
Q 029661 9 ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPATS 86 (190)
Q Consensus 9 ~~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~-~~~i~~i~~~-g~~~g~~i~p~t~ 86 (190)
++...+-|.-||+.-+. -.-||......+.++|||+||+|.-- +..++ .+-+..+++. ..+.-+-.+|...
T Consensus 5 LgVNIdhvAtLRnaR~~------~~Pd~v~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~~~e 77 (239)
T PRK05265 5 LGVNIDHIATLRNARGT------NYPDPVRAALIAEQAGADGITVHLRE-DRRHIRDRDVRLLRETLKTELNLEMAATEE 77 (239)
T ss_pred EEeehhhheeccccCCC------CCCCHHHHHHHHHHcCCCEEEecCCC-CcccCCHHHHHHHHHhcCCCEEeccCCCHH
Confidence 44455566666653210 01256667778899999999999763 22232 2233344432 2344444444322
Q ss_pred HHHHHHhhc-ccceEEEEeeecC---C-CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEE
Q 029661 87 LSAIECVLD-VVDLVLIMSVNPG---F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV 161 (190)
Q Consensus 87 ~~~~~~~~~-~~d~i~~m~v~pG---~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~V 161 (190)
.+.-.++ ..|++.+..-.+. + +|-. .....++++.+.+.+.+.|..+.+=+| =+++.++...+.|||.+=
T Consensus 78 --m~~ia~~~kP~~vtLVPE~r~E~TTegGld-v~~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VE 152 (239)
T PRK05265 78 --MLDIALEVKPHQVTLVPEKREELTTEGGLD-VAGQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIE 152 (239)
T ss_pred --HHHHHHHCCCCEEEECCCCCCCccCCccch-hhcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEE
Confidence 2222222 3688876433321 1 2211 233356666666666665544445465 356889999999999998
Q ss_pred Eccccc
Q 029661 162 AGSAVF 167 (190)
Q Consensus 162 vGsaI~ 167 (190)
.=+.=|
T Consensus 153 LhTG~y 158 (239)
T PRK05265 153 LHTGPY 158 (239)
T ss_pred Eechhh
Confidence 765444
No 389
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.06 E-value=0.86 Score=37.42 Aligned_cols=140 Identities=15% Similarity=0.106 Sum_probs=79.6
Q ss_pred CCHHHHHHhcc---CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEc-CCCC
Q 029661 11 IGPLVVDALRP---VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-PATS 86 (190)
Q Consensus 11 ~G~~~v~~i~~---~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~-p~t~ 86 (190)
+|.+-++.|++ ..++++....+-.. .++.+.+ .+|++-+.... ..+ ..+++++-+.|+.+.+.-. ..|+
T Consensus 63 ~G~~gl~~L~~~~~~~Gl~~~Tev~d~~---~v~~~~e-~vdilqIgs~~--~~n-~~LL~~va~tgkPVilk~G~~~t~ 135 (250)
T PRK13397 63 LGLQGIRYLHEVCQEFGLLSVSEIMSER---QLEEAYD-YLDVIQVGARN--MQN-FEFLKTLSHIDKPILFKRGLMATI 135 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeeCCHH---HHHHHHh-cCCEEEECccc--ccC-HHHHHHHHccCCeEEEeCCCCCCH
Confidence 35555665554 47888887555433 4556666 59999998764 333 4688888888887777766 3344
Q ss_pred HHHH--HHhhcc---cceEEEE-eeecCCCCcccc-hhhHHHHHHHHHHHhhcCCCCeEEEe----CCCCc---ccHHHH
Q 029661 87 LSAI--ECVLDV---VDLVLIM-SVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVD----GGVGP---KNAYKV 152 (190)
Q Consensus 87 ~~~~--~~~~~~---~d~i~~m-~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~~~~~i~vd----GGI~~---e~~~~~ 152 (190)
-++. .+++.. -++++.- ++ -++.. ... .--+.-|..+|+.. +++|.+| +|.+. ......
T Consensus 136 ~e~~~A~e~i~~~Gn~~i~L~eRg~-~~Y~~-~~~n~~dl~ai~~lk~~~-----~lPVivd~SHs~G~r~~v~~~a~AA 208 (250)
T PRK13397 136 EEYLGALSYLQDTGKSNIILCERGV-RGYDV-ETRNMLDIMAVPIIQQKT-----DLPIIVDVSHSTGRRDLLLPAAKIA 208 (250)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcccc-CCCCC-ccccccCHHHHHHHHHHh-----CCCeEECCCCCCcccchHHHHHHHH
Confidence 3321 222221 2444443 33 23321 111 11234455555443 4677777 55542 345567
Q ss_pred HHcCCCEEEEcc
Q 029661 153 IEAGANALVAGS 164 (190)
Q Consensus 153 ~~aGad~~VvGs 164 (190)
+.+|||++++-+
T Consensus 209 vA~GAdGl~IE~ 220 (250)
T PRK13397 209 KAVGANGIMMEV 220 (250)
T ss_pred HHhCCCEEEEEe
Confidence 889999988775
No 390
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.05 E-value=0.18 Score=43.62 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCeEEEeCCCC-cccHHHHHHcCCCEEEEcc
Q 029661 135 NPWIEVDGGVG-PKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 135 ~~~i~vdGGI~-~e~~~~~~~aGad~~VvGs 164 (190)
++++.+ |++. .+.+..+.++|||++.+|+
T Consensus 187 ~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 187 DVPVIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 356655 5565 7899999999999999994
No 391
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=95.05 E-value=0.082 Score=52.07 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=91.3
Q ss_pred HHHHHHhccC-CCCcEEEEEeecC-------h----HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE
Q 029661 13 PLVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~i~~hlmv~d-------p----~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~ 80 (190)
.+-++.+|+. ++.++..-|-=.| | ..|++.+++.|.|.+-+-..-...+++...++++|+.|..+..+
T Consensus 592 werl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~ 671 (1143)
T TIGR01235 592 WERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAA 671 (1143)
T ss_pred HHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 3567788875 8878775443334 3 35777889999999888432213567889999999999998766
Q ss_pred EcCC-------C---CHHHHHHhh----c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----e
Q 029661 81 LNPA-------T---SLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----D 141 (190)
Q Consensus 81 i~p~-------t---~~~~~~~~~----~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----d 141 (190)
|+-. . +++.+.++. + .+|.|.+ ....|......+.+.++.+|+.. +.+|.+ +
T Consensus 672 i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~i----kDt~Gll~P~~~~~Lv~~lk~~~-----~~pi~~H~Hdt 742 (1143)
T TIGR01235 672 ICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGI----KDMAGLLKPAAAKLLIKALREKT-----DLPIHFHTHDT 742 (1143)
T ss_pred EEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCcCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCC
Confidence 5532 2 233333332 2 2565543 34456555566677777777654 245554 4
Q ss_pred CCCCcccHHHHHHcCCCEEEE
Q 029661 142 GGVGPKNAYKVIEAGANALVA 162 (190)
Q Consensus 142 GGI~~e~~~~~~~aGad~~Vv 162 (190)
-|....|.-..+++|||++=+
T Consensus 743 ~Gla~an~laA~eaGad~vD~ 763 (1143)
T TIGR01235 743 SGIAVASMLAAVEAGVDVVDV 763 (1143)
T ss_pred CCcHHHHHHHHHHhCCCEEEe
Confidence 566667777889999998643
No 392
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.01 E-value=0.88 Score=39.13 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=95.3
Q ss_pred HHHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------C-cch---HHHHHHHHHHhCCcE----
Q 029661 14 LVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------S-TIH---LHRTLNQIKDLGAKA---- 77 (190)
Q Consensus 14 ~~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------~-~~~---~~~~i~~i~~~g~~~---- 77 (190)
..++...+.. .+|+-+||==..-.+.+..+.++|.+.|-+=.... + .++ -.++++.++..|+.+
T Consensus 64 ~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaEL 143 (347)
T PRK09196 64 HLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGEL 143 (347)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3455554444 48999998554344568889999999998854421 1 122 256777788777655
Q ss_pred EEE--E--------------------cCCCCHHHHHHhhc--ccceEE--EEeeecCCCCcccch----hhHHHHHHHHH
Q 029661 78 GVV--L--------------------NPATSLSAIECVLD--VVDLVL--IMSVNPGFGGQSFIE----SQVKKISDLRR 127 (190)
Q Consensus 78 g~~--i--------------------~p~t~~~~~~~~~~--~~d~i~--~m~v~pG~~gq~~~~----~~~~ki~~~~~ 127 (190)
|-. . ..-|..+...++.+ .+|.+. +-++| |...+...| --+++++++++
T Consensus 144 G~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~H-G~Yk~~~~p~~~~LdfdrL~eI~~ 222 (347)
T PRK09196 144 GCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSH-GAYKFTRKPTGDVLAIDRIKEIHA 222 (347)
T ss_pred eeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhcccc-CCCCCCCCCChhhccHHHHHHHHh
Confidence 221 1 01356777777775 378764 33444 222111112 24677877777
Q ss_pred HHhhcCCCCeEEEeCCC-----------------------CcccHHHHHHcCCCEEEEcccccC
Q 029661 128 MCLEKGVNPWIEVDGGV-----------------------GPKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 128 ~~~~~~~~~~i~vdGGI-----------------------~~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
..+ ++++..=||- ..+.++++++.|+.-|=++|.+..
T Consensus 223 ~v~----~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 223 RLP----NTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred cCC----CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence 652 3678888877 448899999999999999998764
No 393
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=94.99 E-value=1.5 Score=35.13 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=93.8
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHH---HHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPD---FIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 89 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~ 89 (190)
+.+++|++.-+-++.+-..-.|.+..+++ +.+.+-+.++ ++.- ..--+.++.+++.|+++-+..-- +..+.
T Consensus 41 ~~~~~i~~~~~g~vs~qv~~~~~~~mi~~a~~l~~~~~~i~iKIP~T----~~Gl~A~~~L~~~Gi~v~~T~vf-s~~Qa 115 (213)
T TIGR00875 41 EVLKEIQEAVEGPVSAETISLDAEGMVEEAKELAKLAPNIVVKIPMT----SEGLKAVKILKKEGIKTNVTLVF-SAAQA 115 (213)
T ss_pred HHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHHHHhCCCeEEEeCCC----HHHHHHHHHHHHCCCceeEEEec-CHHHH
Confidence 34555555434466665666676655443 4444545333 3321 22345677777788887664421 12222
Q ss_pred HHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccccC-
Q 029661 90 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG- 168 (190)
Q Consensus 90 ~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~~- 168 (190)
+.-....+|||.. .-|--.. ......+.++++++++..++++.+|-+..=-|.+++-++..+|+|.+-++-.+++
T Consensus 116 ~~Aa~aGa~yisp---yvgRi~d-~g~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~ 191 (213)
T TIGR00875 116 LLAAKAGATYVSP---FVGRLDD-IGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVMQQ 191 (213)
T ss_pred HHHHHcCCCEEEe---ecchHHH-cCCCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHHHH
Confidence 2222235777742 2232111 1123477788889998877788888665555589999999999999999977664
Q ss_pred ---CCCHHHHHHHHHH
Q 029661 169 ---AKDYAEAIKGIKT 181 (190)
Q Consensus 169 ---~~dp~~~~~~l~~ 181 (190)
.+-...+++.+.+
T Consensus 192 l~~~p~t~~~~~~F~~ 207 (213)
T TIGR00875 192 LFNHPLTDIGLERFLK 207 (213)
T ss_pred HHcCCchHHHHHHHHH
Confidence 3555666666654
No 394
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=94.96 E-value=0.12 Score=40.10 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=69.9
Q ss_pred HHHHHHhccCCCCcEEEEEeecC---hHH-HHHHHHHcC-CCEEEEcccCCCcchHHHHHHHHHHhCCcEEE--EEcCCC
Q 029661 13 PLVVDALRPVTDLPLDVHLMIVE---PEQ-RVPDFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPAT 85 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~d---p~~-~i~~~~~~G-ad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~--~i~p~t 85 (190)
++.++.+++ .++.+.+|+=.-+ ..+ -++.+++.+ +|+|+-- -...++.+|+.|+.... ++-.+.
T Consensus 34 ~~~v~~~~~-~gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIIST--------k~~~i~~Ak~~gl~tIqRiFliDS~ 104 (175)
T PF04309_consen 34 KDIVKRLKA-AGKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIIST--------KSNLIKRAKKLGLLTIQRIFLIDSS 104 (175)
T ss_dssp HHHHHHHHH-TT-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEES--------SHHHHHHHHHTT-EEEEEEE-SSHH
T ss_pred HHHHHHHHH-cCCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeC--------CHHHHHHHHHcCCEEEEEeeeecHH
Confidence 456666666 3555555553321 122 356666666 7877632 23578999999998864 444444
Q ss_pred CHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEE
Q 029661 86 SLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 162 (190)
Q Consensus 86 ~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~Vv 162 (190)
.++...+.+. ..|.|-+| ||. .|..+ +++++. .+++|-.+|=|+ .|.+.++.++||+.+-.
T Consensus 105 al~~~~~~i~~~~PD~vEil---Pg~-----~p~vi---~~i~~~-----~~~PiIAGGLI~~~e~v~~al~aGa~aVST 168 (175)
T PF04309_consen 105 ALETGIKQIEQSKPDAVEIL---PGV-----MPKVI---KKIREE-----TNIPIIAGGLIRTKEDVEEALKAGADAVST 168 (175)
T ss_dssp HHHHHHHHHHHHT-SEEEEE---SCC-----HHHHH---CCCCCC-----CSS-EEEESS--SHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHHHhhcCCCEEEEc---hHH-----HHHHH---HHHHHh-----cCCCEEeecccCCHHHHHHHHHcCCEEEEc
Confidence 4555444443 47999775 772 23333 222222 346785555566 68999999999998765
Q ss_pred c
Q 029661 163 G 163 (190)
Q Consensus 163 G 163 (190)
+
T Consensus 169 S 169 (175)
T PF04309_consen 169 S 169 (175)
T ss_dssp -
T ss_pred C
Confidence 5
No 395
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=94.94 E-value=0.61 Score=37.79 Aligned_cols=146 Identities=19% Similarity=0.285 Sum_probs=80.4
Q ss_pred CCCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchH-HHHHHHHHHh-CCcEEEEEcCCCCH
Q 029661 10 TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPATSL 87 (190)
Q Consensus 10 ~~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~-~~~i~~i~~~-g~~~g~~i~p~t~~ 87 (190)
+...+-|.-||+.-+. ---||......+.++|||+||+|.-- +..++ .+-+..+++. ..+.-+-.+|+.
T Consensus 3 gVNIdhvAtLRnaR~~------~~Pdpv~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~-- 73 (234)
T cd00003 3 GVNIDHVATLRNARGT------NYPDPVEAALLAEKAGADGITVHLRE-DRRHIQDRDVRLLRELVRTELNLEMAPTE-- 73 (234)
T ss_pred ccchhhhhhhhhcCCC------CCCCHHHHHHHHHHcCCCEEEecCCC-CcCcCCHHHHHHHHHHcCCCEEeccCCCH--
Confidence 4445556666654210 01256667778899999999999763 22232 2333344432 234444444422
Q ss_pred HHHHHhhc-ccceEEEEeeecC---C-CCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEE
Q 029661 88 SAIECVLD-VVDLVLIMSVNPG---F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 162 (190)
Q Consensus 88 ~~~~~~~~-~~d~i~~m~v~pG---~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~Vv 162 (190)
+.+.-.++ ..|++.+..-.+. + +|-. .....++++.+.+.+.+.+..+.+=+|.- ++.++...+.|||.+=.
T Consensus 74 em~~ia~~~kP~~vtLVPEkr~E~TTegGld-v~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~GAd~VEL 150 (234)
T cd00003 74 EMLEIALEVKPHQVTLVPEKREELTTEGGLD-VAGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVEL 150 (234)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCccCCccch-hhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEE
Confidence 22222222 3688876433221 1 2211 12334566666666666554444445553 67899999999999988
Q ss_pred ccccc
Q 029661 163 GSAVF 167 (190)
Q Consensus 163 GsaI~ 167 (190)
=+.=|
T Consensus 151 hTG~Y 155 (234)
T cd00003 151 HTGPY 155 (234)
T ss_pred echhh
Confidence 76544
No 396
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.90 E-value=0.2 Score=41.75 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=64.3
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 92 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~ 92 (190)
+.++.+|+. ++.++.+.+- + .+-.+.+.++|+|.|.+|-.. .+++.+.++.+++.+.++.+..+-.-..+.+.+
T Consensus 177 ~av~~~r~~~~~~kIeVEv~--t-leea~ea~~~GaDiI~lDn~~--~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ 251 (277)
T TIGR01334 177 GAIGRLKQTAPERKITVEAD--T-IEQALTVLQASPDILQLDKFT--PQQLHHLHERLKFFDHIPTLAAAGGINPENIAD 251 (277)
T ss_pred HHHHHHHHhCCCCCEEEECC--C-HHHHHHHHHcCcCEEEECCCC--HHHHHHHHHHHhccCCCEEEEEECCCCHHHHHH
Confidence 567777764 5566666443 3 335566789999999999764 677888888888767788888888888888888
Q ss_pred hhcc-cceEEEEe
Q 029661 93 VLDV-VDLVLIMS 104 (190)
Q Consensus 93 ~~~~-~d~i~~m~ 104 (190)
|... +|+|..-+
T Consensus 252 ya~~GvD~is~ga 264 (277)
T TIGR01334 252 YIEAGIDLFITSA 264 (277)
T ss_pred HHhcCCCEEEeCc
Confidence 8765 89986533
No 397
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.83 E-value=1.8 Score=35.65 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCCEEEEc-ccCCCcchHHHHHHHHHHhCCcEEEE--EcCCCCHHHHHHhhc-ccceEEE-EeeecCC---
Q 029661 38 QRVPDFIKAGADIVSVH-CEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLD-VVDLVLI-MSVNPGF--- 109 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh-~e~~~~~~~~~~i~~i~~~g~~~g~~--i~p~t~~~~~~~~~~-~~d~i~~-m~v~pG~--- 109 (190)
++++.+.++|.+.|=+. +-. .++..+.++.+.+.+.+..+. +.+ ..+.++..++ .+|.|-+ +++.+..
T Consensus 26 ~i~~~L~~~Gv~~IEvG~P~~--~~~~~~~~~~l~~~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~S~~~~~~ 101 (262)
T cd07948 26 EIAKALDAFGVDYIELTSPAA--SPQSRADCEAIAKLGLKAKILTHIRC--HMDDARIAVETGVDGVDLVFGTSPFLREA 101 (262)
T ss_pred HHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHHHhCCCCCcEEEEecC--CHHHHHHHHHcCcCEEEEEEecCHHHHHH
Confidence 46788999999999883 322 334555666666655544442 332 2333444443 3676543 3333221
Q ss_pred -CCcccchhhHHHHHHHHHHHhhcCCCCeEE--EeCCCCcccH----HHHHHcCCCEEEEc
Q 029661 110 -GGQSFIESQVKKISDLRRMCLEKGVNPWIE--VDGGVGPKNA----YKVIEAGANALVAG 163 (190)
Q Consensus 110 -~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~--vdGGI~~e~~----~~~~~aGad~~VvG 163 (190)
-+. -.++.++++.++.++..+.+..+.+. -.++.+++.+ +.+.++|+|.+.+.
T Consensus 102 ~~~~-~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 102 SHGK-SITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred HhCC-CHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 111 13566777777777776666544433 3455555544 56677899987766
No 398
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=94.79 E-value=1 Score=38.74 Aligned_cols=154 Identities=12% Similarity=0.125 Sum_probs=95.5
Q ss_pred HHHHHhccCCCCcEEEEEeecCh--HHHHHHHHHcC-----------CCEEEEcccCCCc-chH---HHHHHHHHHhCCc
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEP--EQRVPDFIKAG-----------ADIVSVHCEQSST-IHL---HRTLNQIKDLGAK 76 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp--~~~i~~~~~~G-----------ad~v~vh~e~~~~-~~~---~~~i~~i~~~g~~ 76 (190)
..++.+.+..++|+-+||==... .++++.+.++| .+.|-+=....+. +++ .++++.++.+|+.
T Consensus 82 ~~v~~~A~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~Gvs 161 (350)
T PRK09197 82 KHVHEVAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMT 161 (350)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 45555555578999999855433 45777777777 7877764432221 222 4567778877765
Q ss_pred E----EEE------E--------cCCCCHHHHHHhhcc--c----ceEE--EEeeecCCCCcccchhhHHHHHHHHHHHh
Q 029661 77 A----GVV------L--------NPATSLSAIECVLDV--V----DLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCL 130 (190)
Q Consensus 77 ~----g~~------i--------~p~t~~~~~~~~~~~--~----d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~ 130 (190)
+ |-. . ..-|..+..+++.+. + |.+. +-++| |...+.-..-.+++++++++.+.
T Consensus 162 VEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~H-G~Yk~~~p~Ld~e~L~~I~~~v~ 240 (350)
T PRK09197 162 LEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVH-GVYKPGNVKLRPEILKDSQEYVS 240 (350)
T ss_pred EEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeeccccc-CCcCCCCCccCHHHHHHHHHHHH
Confidence 4 221 1 113667777777764 3 5443 23344 22211012234778888888774
Q ss_pred hc-C---CCCeEEEeCCCC--cccHHHHHHcCCCEEEEcccccC
Q 029661 131 EK-G---VNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 131 ~~-~---~~~~i~vdGGI~--~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
+. + .++++..=||-. .+.++++++.|..-+=++|.+..
T Consensus 241 ~~~~~~~~~vPLVLHGgSGipde~i~~ai~~GI~KINi~T~l~~ 284 (350)
T PRK09197 241 KKFGLPAKPFDFVFHGGSGSTLEEIREAVSYGVVKMNIDTDTQW 284 (350)
T ss_pred HhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCCCeeEEeCcHHHH
Confidence 22 1 147888888766 58999999999999999987753
No 399
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=94.79 E-value=0.45 Score=39.23 Aligned_cols=137 Identities=16% Similarity=0.248 Sum_probs=73.6
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHc--CCCEEEEc-ccCCCcchHHHHHHHHHHhCCcEEEEEc--CCCC---
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GADIVSVH-CEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATS--- 86 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~--Gad~v~vh-~e~~~~~~~~~~i~~i~~~g~~~g~~i~--p~t~--- 86 (190)
.|+.+++.++.|+.+ -+.+|. .++.+.++ |+++|.=- .+ .+...+.+..++++|..+.+... ..+|
T Consensus 60 ~v~~l~~~~~~plsI--DT~~~~-v~eaaL~~~~G~~iINsIs~~---~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~ 133 (261)
T PRK07535 60 LVETVQEVVDVPLCI--DSPNPA-AIEAGLKVAKGPPLINSVSAE---GEKLEVVLPLVKKYNAPVVALTMDDTGIPKDA 133 (261)
T ss_pred HHHHHHHhCCCCEEE--eCCCHH-HHHHHHHhCCCCCEEEeCCCC---CccCHHHHHHHHHhCCCEEEEecCCCCCCCCH
Confidence 566676656778765 345665 44556666 98876532 22 12245778889999998877544 2223
Q ss_pred ---HHHHHHhhcc-----c--ceEEEEeeecCCC----CcccchhhHHHHHHHHHHHhhcCCCCeEE---EeCCCCcc--
Q 029661 87 ---LSAIECVLDV-----V--DLVLIMSVNPGFG----GQSFIESQVKKISDLRRMCLEKGVNPWIE---VDGGVGPK-- 147 (190)
Q Consensus 87 ---~~~~~~~~~~-----~--d~i~~m~v~pG~~----gq~~~~~~~~ki~~~~~~~~~~~~~~~i~---vdGGI~~e-- 147 (190)
.+.+++.++. + +.|+ ++||++ ++...-++++.++++++..+ +....+. +.+|+ ++
T Consensus 134 ~~~~~~l~~~v~~a~~~GI~~~~Ii---lDPgi~~~~~~~~~~~~~l~~i~~l~~~~p--g~p~l~G~Sn~Sfgl-p~r~ 207 (261)
T PRK07535 134 EDRLAVAKELVEKADEYGIPPEDIY---IDPLVLPLSAAQDAGPEVLETIRRIKELYP--KVHTTCGLSNISFGL-PNRK 207 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCCHhHEE---EeCCCCcccCChHHHHHHHHHHHHHHHhCC--CCCEEEEeCCCccCC-cchH
Confidence 2333333321 2 2333 388876 22223344666666665542 2222222 34444 22
Q ss_pred -----cHHHHHHcCCCEEEEc
Q 029661 148 -----NAYKVIEAGANALVAG 163 (190)
Q Consensus 148 -----~~~~~~~aGad~~VvG 163 (190)
=+..+.++|.|..|+=
T Consensus 208 ~in~~fl~~a~~~Gl~~aI~n 228 (261)
T PRK07535 208 LINRAFLVMAMGAGMDSAILD 228 (261)
T ss_pred HHHHHHHHHHHHcCCCEEeeC
Confidence 2345678898866653
No 400
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.78 E-value=0.57 Score=40.43 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc-----
Q 029661 38 QRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV----- 96 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~----- 96 (190)
+-++.+.++|++.|.+..-.. ..+...+.++.+|+.|.++.+.+. ..++.+.+.+++..
T Consensus 75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g 154 (363)
T TIGR02090 75 KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG 154 (363)
T ss_pred HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC
Confidence 347888999999988832210 013355788889999998876543 33556655555432
Q ss_pred cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661 97 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 97 ~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~ 160 (190)
+|.|.+ +.+.|...+..+.+.++.+++..+ .++++ |-|....|.-..+++||+.+
T Consensus 155 ~~~i~l----~DT~G~~~P~~v~~li~~l~~~~~-----~~l~~H~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 155 ADRINI----ADTVGVLTPQKMEELIKKLKENVK-----LPISVHCHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred CCEEEE----eCCCCccCHHHHHHHHHHHhcccC-----ceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence 566654 334455555666666777765432 34543 45555557778889999875
No 401
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=94.71 E-value=1.9 Score=35.00 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=98.0
Q ss_pred CHHHHHHhccCC--CCcEEEEEe--ecChHHHH---HHHHHcCCCEEEEcccCCCcchH-------HHHHHHHHHh--CC
Q 029661 12 GPLVVDALRPVT--DLPLDVHLM--IVEPEQRV---PDFIKAGADIVSVHCEQSSTIHL-------HRTLNQIKDL--GA 75 (190)
Q Consensus 12 G~~~v~~i~~~~--~~~i~~hlm--v~dp~~~i---~~~~~~Gad~v~vh~e~~~~~~~-------~~~i~~i~~~--g~ 75 (190)
-+.+|++|+... .+|+-+-+= -++|+... ......|+|+|=+.... ..+. ..+.+..++. +.
T Consensus 38 ~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g--~~~~~~a~e~l~~v~~av~~~~~~~ 115 (235)
T PF04476_consen 38 FPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFG--CKDYDEAIEALEAVVRAVKDFDPDK 115 (235)
T ss_pred CHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCC--CCCHHHHHHHHHHHHHHHhhhCCCc
Confidence 467888888763 367777331 13455432 23456799999997652 2233 3333444443 33
Q ss_pred cEEEEEcCCC-------CHHHHHHhhcc--cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc
Q 029661 76 KAGVVLNPAT-------SLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 146 (190)
Q Consensus 76 ~~g~~i~p~t-------~~~~~~~~~~~--~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~ 146 (190)
++.-+.-.+. |.+ +.+++.. .+.+++=|-... ++..|.....+.+.+..+...+++ ...+..|.++.
T Consensus 116 ~vVAv~yAD~~r~~~~~p~~-l~~~a~~aG~~gvMlDTa~Kd-g~~L~d~~~~~~L~~Fv~~ar~~g--L~~aLAGSL~~ 191 (235)
T PF04476_consen 116 KVVAVGYADAQRVGSISPLD-LPEIAAEAGFDGVMLDTADKD-GGSLFDHLSEEELAEFVAQARAHG--LMCALAGSLRF 191 (235)
T ss_pred EEEEEEecchhhhcCCCHHH-HHHHHHHcCCCEEEEecccCC-CCchhhcCCHHHHHHHHHHHHHcc--chhhccccCCh
Confidence 4433333222 233 3344333 566655333322 233455555666776666665544 56788999999
Q ss_pred ccHHHHHHcCCCEEEEcccccCCCCH------HHHHHHHHHhh
Q 029661 147 KNAYKVIEAGANALVAGSAVFGAKDY------AEAIKGIKTSK 183 (190)
Q Consensus 147 e~~~~~~~aGad~~VvGsaI~~~~dp------~~~~~~l~~~~ 183 (190)
++++.+...++|++=+=+++....|- .+.+++|++.+
T Consensus 192 ~di~~L~~l~pD~lGfRGAvC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 192 EDIPRLKRLGPDILGFRGAVCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred hHHHHHHhcCCCEEEechhhCCCCCcCccccCHHHHHHHHHhc
Confidence 99999999999999887888865322 24666666654
No 402
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.31 Score=41.95 Aligned_cols=111 Identities=24% Similarity=0.220 Sum_probs=70.7
Q ss_pred HHHHHHcCCCEEEEccc---------CCCcchHHHHHHHHHHhCCcEEEEEcCCCC---HHHHHHhhcc-----cceEEE
Q 029661 40 VPDFIKAGADIVSVHCE---------QSSTIHLHRTLNQIKDLGAKAGVVLNPATS---LSAIECVLDV-----VDLVLI 102 (190)
Q Consensus 40 i~~~~~~Gad~v~vh~e---------~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~---~~~~~~~~~~-----~d~i~~ 102 (190)
+..+.+.|||.|.+..- .-+.+++.+.++.++++|+++.+++|.... .+.+.++++. +|.|.+
T Consensus 19 l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv 98 (347)
T COG0826 19 LKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIV 98 (347)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEE
Confidence 45678899999999522 113567899999999999999999985533 3333344432 455543
Q ss_pred EeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEEEEcccc
Q 029661 103 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV 166 (190)
Q Consensus 103 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsaI 166 (190)
- .|.. |.-+++..++ ..+.+.+.-.++ .+++.-+.+.|+..+|.-+.+
T Consensus 99 --~---------Dpg~---i~l~~e~~p~--l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 99 --A---------DPGL---IMLARERGPD--LPIHVSTQANVTNAETAKFWKELGAKRVVLPREL 147 (347)
T ss_pred --c---------CHHH---HHHHHHhCCC--CcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccC
Confidence 1 2223 3333443322 233455566666 788888999998888877643
No 403
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=94.62 E-value=0.5 Score=38.31 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=66.5
Q ss_pred HHhccC-CCCcEEEEEeec-------ChHHHHHHHHHcCCCEEEEc---------ccCCCcchHHHHHHHHHHhCCcEEE
Q 029661 17 DALRPV-TDLPLDVHLMIV-------EPEQRVPDFIKAGADIVSVH---------CEQSSTIHLHRTLNQIKDLGAKAGV 79 (190)
Q Consensus 17 ~~i~~~-~~~~i~~hlmv~-------dp~~~i~~~~~~Gad~v~vh---------~e~~~~~~~~~~i~~i~~~g~~~g~ 79 (190)
+.++.. .+..+++-++-. +|..+.+.+.++|++.+.+- .+.-+.+.+.++++.+|++|..+|+
T Consensus 106 ~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aL 185 (235)
T PF04476_consen 106 RAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCAL 185 (235)
T ss_pred HHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhc
Confidence 445543 456677766653 25677788999999999882 1111245788999999999999999
Q ss_pred EEcCCCC-HHHHHHhhcccceEEEEeeecCCCCccc-chhhHHHHHHHHHH
Q 029661 80 VLNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRM 128 (190)
Q Consensus 80 ~i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~-~~~~~~ki~~~~~~ 128 (190)
+=+-..+ +..+..+ ..|++-+-+--.+. |+.- ..-..++++++|+.
T Consensus 186 AGSL~~~di~~L~~l--~pD~lGfRGAvC~g-gdR~~G~id~~~V~~lr~~ 233 (235)
T PF04476_consen 186 AGSLRFEDIPRLKRL--GPDILGFRGAVCGG-GDRRAGRIDPELVAALRAL 233 (235)
T ss_pred cccCChhHHHHHHhc--CCCEEEechhhCCC-CCcCccccCHHHHHHHHHh
Confidence 7554333 3444443 47999776544432 1111 11224455555554
No 404
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.59 E-value=0.1 Score=42.92 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=44.4
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA 77 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~ 77 (190)
-|.++++++++.++.|+.-+.|... .++.+.+. +|++=+.+.. ..+ .++++++-+.|+-+
T Consensus 68 eGL~~L~~vk~~~GlpvvTeV~~~~---~~~~v~~~-~DilQIgArn--~rn-~~LL~a~g~t~kpV 127 (264)
T PRK05198 68 EGLKILQEVKETFGVPVLTDVHEPE---QAAPVAEV-VDVLQIPAFL--CRQ-TDLLVAAAKTGKVV 127 (264)
T ss_pred HHHHHHHHHHHHHCCceEEEeCCHH---HHHHHHhh-CcEEEECchh--cch-HHHHHHHhccCCeE
Confidence 3677888888889999999877654 56777777 9999999874 332 46787777766543
No 405
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=94.59 E-value=1.2 Score=40.07 Aligned_cols=140 Identities=11% Similarity=0.140 Sum_probs=87.2
Q ss_pred HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCC-Ccccc
Q 029661 39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFG-GQSFI 115 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~-gq~~~ 115 (190)
.++...+.|+|+|.+-.-. +.+++.++-+.+++.|.++.+...-+|+ ++.+++++..+|.|++-.-+-|.. | .
T Consensus 179 di~f~~~~~vD~ia~SFV~-~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~g---~ 254 (480)
T cd00288 179 DLRFGVEQGVDMIFASFVR-KASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIP---A 254 (480)
T ss_pred HHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhcC---h
Confidence 4666789999999987543 3556777777777777676665444444 678889888899988632222211 1 2
Q ss_pred hhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------Cc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661 116 ESQVKKISDLRRMCLEKGVNPWIEVDGGV--------GP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182 (190)
Q Consensus 116 ~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~ 182 (190)
++.....+++.+.+.+++. ++.+.-=+ .| ..+..++..|+|.+.+..-=-....|.++++.+.+.
T Consensus 255 ~~v~~~qk~ii~~~~~~gk--pvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I 332 (480)
T cd00288 255 EEVFLAQKMLIAKCNLAGK--PVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARI 332 (480)
T ss_pred HHHHHHHHHHHHHHHHcCC--CEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHH
Confidence 4445555555565555543 33332211 11 145556667999999864433346889998888775
Q ss_pred hc
Q 029661 183 KR 184 (190)
Q Consensus 183 ~~ 184 (190)
+.
T Consensus 333 ~~ 334 (480)
T cd00288 333 CL 334 (480)
T ss_pred HH
Confidence 53
No 406
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.57 E-value=0.16 Score=45.68 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCC-HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHH
Q 029661 75 AKAGVVLNPATS-LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 152 (190)
Q Consensus 75 ~~~g~~i~p~t~-~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~ 152 (190)
..+|.++..... .++++.+++ .+|.|.+ ++. .| -.+..++.|+++|+..+ +.+|.+....+.+.+..+
T Consensus 230 L~Vgaavg~~~~~~~~~~~l~~ag~d~i~i---d~a-~G--~s~~~~~~i~~ik~~~~----~~~v~aG~V~t~~~a~~~ 299 (495)
T PTZ00314 230 LLVGAAISTRPEDIERAAALIEAGVDVLVV---DSS-QG--NSIYQIDMIKKLKSNYP----HVDIIAGNVVTADQAKNL 299 (495)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCEEEE---ecC-CC--CchHHHHHHHHHHhhCC----CceEEECCcCCHHHHHHH
Confidence 446677765322 466666665 3787754 332 22 12335677888887643 367766566668999999
Q ss_pred HHcCCCEEEEc
Q 029661 153 IEAGANALVAG 163 (190)
Q Consensus 153 ~~aGad~~VvG 163 (190)
+++|||++.+|
T Consensus 300 ~~aGad~I~vg 310 (495)
T PTZ00314 300 IDAGADGLRIG 310 (495)
T ss_pred HHcCCCEEEEC
Confidence 99999999875
No 407
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.53 E-value=0.46 Score=42.24 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=51.5
Q ss_pred EEEEEcCC-CCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHH
Q 029661 77 AGVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE 154 (190)
Q Consensus 77 ~g~~i~p~-t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~ 154 (190)
++-++... ...++.+.+++ .+|.|.+=+.+ | -.+..++.|+++|+..+ +.+|.+.+..+.+.+..+++
T Consensus 215 V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~-g-----~~~~~~~~i~~i~~~~~----~~~vi~G~v~t~~~a~~l~~ 284 (450)
T TIGR01302 215 VGAAVGTREFDKERAEALVKAGVDVIVIDSSH-G-----HSIYVIDSIKEIKKTYP----DLDIIAGNVATAEQAKALID 284 (450)
T ss_pred EEEEecCchhHHHHHHHHHHhCCCEEEEECCC-C-----cHhHHHHHHHHHHHhCC----CCCEEEEeCCCHHHHHHHHH
Confidence 34444432 22456666655 37887653333 2 22456777888877643 46787878888999999999
Q ss_pred cCCCEEEEc
Q 029661 155 AGANALVAG 163 (190)
Q Consensus 155 aGad~~VvG 163 (190)
+|||++.+|
T Consensus 285 aGad~i~vg 293 (450)
T TIGR01302 285 AGADGLRVG 293 (450)
T ss_pred hCCCEEEEC
Confidence 999999766
No 408
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=94.50 E-value=0.32 Score=42.16 Aligned_cols=92 Identities=17% Similarity=0.313 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEEEeee--cCC-CCcccchhhHHHHHHHHHHHhhcCCCCeE
Q 029661 63 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVN--PGF-GGQSFIESQVKKISDLRRMCLEKGVNPWI 138 (190)
Q Consensus 63 ~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~--pG~-~gq~~~~~~~~ki~~~~~~~~~~~~~~~i 138 (190)
+.+.++.+|+.+..+-+-++|....+..+.+.+ .+|.|.+.+.. ..+ ++.. ....+.++++. .++++
T Consensus 121 ~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~----~p~~l~~~i~~-----~~IPV 191 (369)
T TIGR01304 121 LGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSG----EPLNLKEFIGE-----LDVPV 191 (369)
T ss_pred HHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCC----CHHHHHHHHHH-----CCCCE
Confidence 345566777766444455555444444444444 38888764321 111 1211 12334444432 23667
Q ss_pred EEeCCCC-cccHHHHHHcCCCEEEEcc
Q 029661 139 EVDGGVG-PKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 139 ~vdGGI~-~e~~~~~~~aGad~~VvGs 164 (190)
.+ |++. .+.+..+.++|||++++|+
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 55 5555 7899999999999999885
No 409
>PRK15108 biotin synthase; Provisional
Probab=94.49 E-value=2.8 Score=35.96 Aligned_cols=162 Identities=16% Similarity=0.211 Sum_probs=91.4
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-----------CcchHHHHHHHHHHhCCcEE--EE
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDLGAKAG--VV 80 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~g~~~g--~~ 80 (190)
+.++.||+ .+..+.+.+-..+ .+.++.+.++|+|.+.+-.|+. +.++.-+.++.+++.|++++ +.
T Consensus 115 ~~i~~ik~-~~i~v~~s~G~ls-~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i 192 (345)
T PRK15108 115 QMVQGVKA-MGLETCMTLGTLS-ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGI 192 (345)
T ss_pred HHHHHHHh-CCCEEEEeCCcCC-HHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEE
Confidence 45666664 3444444433333 5678889999999988855541 11234567777777888874 45
Q ss_pred EcCCCCH-HHHHHhh---c---ccceEEEEeee--cCCC--Ccc-c-chhhHHHHHHHHHHHhhcCCCCeEEEeCCC-C-
Q 029661 81 LNPATSL-SAIECVL---D---VVDLVLIMSVN--PGFG--GQS-F-IESQVKKISDLRRMCLEKGVNPWIEVDGGV-G- 145 (190)
Q Consensus 81 i~p~t~~-~~~~~~~---~---~~d~i~~m~v~--pG~~--gq~-~-~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI-~- 145 (190)
+...... ++++-+. + .++.|-+.-.. ||+- +.+ . ..+.+..|.-.|=++++ ..+-+.||- +
T Consensus 193 ~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~----~~i~i~~g~~~~ 268 (345)
T PRK15108 193 VGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPT----SYVRLSAGREQM 268 (345)
T ss_pred EeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----ceeeecccHhHh
Confidence 5554443 3332222 1 23455444443 3542 211 1 13345556666655543 346677776 2
Q ss_pred -cccHHHHHHcCCCEEEEcccc-cCC-CCHHHHHHHHHH
Q 029661 146 -PKNAYKVIEAGANALVAGSAV-FGA-KDYAEAIKGIKT 181 (190)
Q Consensus 146 -~e~~~~~~~aGad~~VvGsaI-~~~-~dp~~~~~~l~~ 181 (190)
.+.-+....+|||.+++|-.+ +.. .++++-++-+++
T Consensus 269 ~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~ 307 (345)
T PRK15108 269 NEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRK 307 (345)
T ss_pred ChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHH
Confidence 345677889999999999864 443 345554444543
No 410
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=94.48 E-value=1.4 Score=37.81 Aligned_cols=149 Identities=13% Similarity=0.111 Sum_probs=94.5
Q ss_pred HHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-------C-cchH---HHHHHHHHHhCCcE----E
Q 029661 15 VVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-------S-TIHL---HRTLNQIKDLGAKA----G 78 (190)
Q Consensus 15 ~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-------~-~~~~---~~~i~~i~~~g~~~----g 78 (190)
.++.+.+.. ++|+-+||==..-.+.+..+.++|.+.|-+=.... + .+++ .++++.++..|+.+ |
T Consensus 63 ~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG 142 (347)
T TIGR01521 63 LILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELG 142 (347)
T ss_pred HHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 455555444 48999998554345578889999999998854421 1 1222 46777788766554 2
Q ss_pred EE--E--------------------cCCCCHHHHHHhhc--ccceEE--EEeeecCCCCcccch----hhHHHHHHHHHH
Q 029661 79 VV--L--------------------NPATSLSAIECVLD--VVDLVL--IMSVNPGFGGQSFIE----SQVKKISDLRRM 128 (190)
Q Consensus 79 ~~--i--------------------~p~t~~~~~~~~~~--~~d~i~--~m~v~pG~~gq~~~~----~~~~ki~~~~~~ 128 (190)
-. . ..-|..+..+++.+ .+|.+. +-++| |...+...| --+++++++++.
T Consensus 143 ~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~~~~Ld~~rL~eI~~~ 221 (347)
T TIGR01521 143 CLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSH-GAYKFTRKPTGEVLAIQRIEEIHAR 221 (347)
T ss_pred ecccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhccccc-CCcCCCCCCChhhcCHHHHHHHHcc
Confidence 21 0 11356677777776 378754 23344 222111112 336777777766
Q ss_pred HhhcCCCCeEEEeCCCC-----------------------cccHHHHHHcCCCEEEEcccccC
Q 029661 129 CLEKGVNPWIEVDGGVG-----------------------PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 129 ~~~~~~~~~i~vdGGI~-----------------------~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
++ ++++..=||-. .+.++++++.|..-+=++|.+..
T Consensus 222 v~----~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~ 280 (347)
T TIGR01521 222 LP----DTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRL 280 (347)
T ss_pred CC----CCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence 52 36788888776 47999999999999999998864
No 411
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=94.47 E-value=0.99 Score=38.14 Aligned_cols=70 Identities=13% Similarity=0.321 Sum_probs=51.4
Q ss_pred CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc-ccHHHHHHcCCCEEEEcccc-cC-----CCCHHHHHHHHHHhh
Q 029661 111 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAV-FG-----AKDYAEAIKGIKTSK 183 (190)
Q Consensus 111 gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~-e~~~~~~~aGad~~VvGsaI-~~-----~~dp~~~~~~l~~~~ 183 (190)
.+.+.|.+++-+.++-+..+. .+++..|||++. ..+-+....||..+-+|+.+ |. ..-.++.++-|++.+
T Consensus 257 QlD~vpAtI~~L~Evv~aV~~---ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~ef 333 (363)
T KOG0538|consen 257 QLDYVPATIEALPEVVKAVEG---RIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEF 333 (363)
T ss_pred ccCcccchHHHHHHHHHHhcC---ceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHH
Confidence 345567888878777776654 478899999995 56777889999999999975 43 235567777777643
No 412
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=94.46 E-value=1 Score=31.86 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661 63 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 140 (190)
Q Consensus 63 ~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v 140 (190)
+.-+...++++|.++-+. ..+.+.+.+.+.+. ..|.|.+ |+.- .. ......++.+..++.+.+..+.+
T Consensus 17 l~~la~~l~~~G~~v~~~-d~~~~~~~l~~~~~~~~pd~V~i-S~~~--~~------~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDIL-DANVPPEELVEALRAERPDVVGI-SVSM--TP------NLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHTTBEEEEE-ESSB-HHHHHHHHHHTTCSEEEE-EESS--ST------HHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCeEEEE-CCCCCHHHHHHHHhcCCCcEEEE-EccC--cC------cHHHHHHHHHHHHhcCCCCEEEE
Confidence 455666677788887643 33444455544432 4677765 3321 11 12223333344444455677755
Q ss_pred eCCCCcccHHHHHH--cCCCEEEEcc
Q 029661 141 DGGVGPKNAYKVIE--AGANALVAGS 164 (190)
Q Consensus 141 dGGI~~e~~~~~~~--aGad~~VvGs 164 (190)
.|..-.....++.+ .|+|.++.|-
T Consensus 87 GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 87 GGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp EESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred ECCchhcChHHHhccCcCcceecCCC
Confidence 55543444455444 7999999994
No 413
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=94.42 E-value=3.1 Score=36.15 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcc-cceEEE-EeeecCCCC---c
Q 029661 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLI-MSVNPGFGG---Q 112 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~-~d~i~~-m~v~pG~~g---q 112 (190)
.+++.+.++|++.|=+..-+ ..+...+.++.+.+.+.+.-+.....+..+.++..++. +|.|-+ .++.+-.-- .
T Consensus 30 ~ia~~L~~~GV~~IE~G~p~-~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~ 108 (378)
T PRK11858 30 AIARMLDEIGVDQIEAGFPA-VSEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLK 108 (378)
T ss_pred HHHHHHHHhCCCEEEEeCCC-cChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC
Confidence 46778899999998774221 12234467888888887765544333444455554443 666543 222211000 0
Q ss_pred ccchhhHHHHHHHHHHHhhcCCCCeEE-EeCCCC-cc----cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 113 SFIESQVKKISDLRRMCLEKGVNPWIE-VDGGVG-PK----NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 113 ~~~~~~~~ki~~~~~~~~~~~~~~~i~-vdGGI~-~e----~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
.-.++.++++.+.-++..+.+..+.+. -|++-. ++ -++.+.++|||.+.+-=.. ..-.|.+..+.++.
T Consensus 109 ~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~-G~~~P~~v~~lv~~ 182 (378)
T PRK11858 109 KTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV-GILDPFTMYELVKE 182 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHHH
Confidence 114666777777777777666544433 244433 33 4456678899988766322 33456655444433
No 414
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.42 E-value=1.3 Score=31.90 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=59.1
Q ss_pred HHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEEeC
Q 029661 66 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDG 142 (190)
Q Consensus 66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~vdG 142 (190)
+...++..|.++. .+.+.+|.+.+.+.+. .+|+|.+-+.. +...+.++++.+.+.+.+. ++.+.+.|
T Consensus 19 ~~~~l~~~G~~vi-~lG~~vp~e~~~~~a~~~~~d~V~iS~~~---------~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 19 IARALRDAGFEVI-YTGLRQTPEEIVEAAIQEDVDVIGLSSLS---------GGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEcccc---------hhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 3445666776653 4556677766655443 37777653332 1223333444444434333 56777777
Q ss_pred CCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 029661 143 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180 (190)
Q Consensus 143 GI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~ 180 (190)
....+...++.++|.|.++-++ .++++.+..++
T Consensus 89 ~~~~~~~~~~~~~G~d~~~~~~-----~~~~~~~~~~~ 121 (122)
T cd02071 89 IIPPEDYELLKEMGVAEIFGPG-----TSIEEIIDKIR 121 (122)
T ss_pred CCCHHHHHHHHHCCCCEEECCC-----CCHHHHHHHHh
Confidence 7777788899999999887553 45555555554
No 415
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=94.41 E-value=1.1 Score=38.85 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=72.8
Q ss_pred HHHHHHHcCCCEEEEcccCCC---------------cchHHHHHHHHHHhCCc-E--EEEEcCCCCHHHHHHhhc-----
Q 029661 39 RVPDFIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDLGAK-A--GVVLNPATSLSAIECVLD----- 95 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~---------------~~~~~~~i~~i~~~g~~-~--g~~i~p~t~~~~~~~~~~----- 95 (190)
.++.+.++|++.+++-.|+.+ .+..-+.++.+++.|++ + |+.+......+...+.+.
T Consensus 165 ~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L 244 (371)
T PRK09240 165 EYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYL 244 (371)
T ss_pred HHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHH
Confidence 457899999999999877631 12234567777888986 4 555554433322222221
Q ss_pred --c-------cceEEEEeeecC-CCCccc-c-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHH-H-------HHc
Q 029661 96 --V-------VDLVLIMSVNPG-FGGQSF-I-ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK-V-------IEA 155 (190)
Q Consensus 96 --~-------~d~i~~m~v~pG-~~gq~~-~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~-~-------~~a 155 (190)
. +.+.-+|.. || +..+.. . .+.++.|...|-+.++ ..|.+.||=. .+++. + ..+
T Consensus 245 ~~~~~~~~~sv~~~~l~P~-~g~~~~~~~~~~~e~l~~ia~~Rl~lP~----~~i~~s~g~~-~~lrd~~~~~~~~~~~a 318 (371)
T PRK09240 245 QRKYWQAEYSISFPRLRPC-TGGIEPASIVSDKQLVQLICAFRLFLPD----VEISLSTRES-PEFRDNLIPLGITKMSA 318 (371)
T ss_pred HHhCCCCceeeecCccccC-CCCCCCCCCCCHHHHHHHHHHHHHHCcc----cccEEecCCC-HHHHHHHHhhcceeecc
Confidence 0 122234444 45 222221 1 3445556666666654 5688899843 33332 1 233
Q ss_pred CCCEEEEcccccC-----------CCCHHHHHHHHHH
Q 029661 156 GANALVAGSAVFG-----------AKDYAEAIKGIKT 181 (190)
Q Consensus 156 Gad~~VvGsaI~~-----------~~dp~~~~~~l~~ 181 (190)
| +...+|.+... ...+++-++.|++
T Consensus 319 g-~~~~~G~y~~~~~~~~qf~~~~~r~~~~~~~~i~~ 354 (371)
T PRK09240 319 G-SSTQPGGYADDHKELEQFEISDDRSVEEVAAALRA 354 (371)
T ss_pred C-ccCCCCCcCCCCCCcCCccCCCCCCHHHHHHHHHH
Confidence 3 55566666654 2345555555554
No 416
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.40 E-value=1.5 Score=32.52 Aligned_cols=105 Identities=18% Similarity=0.076 Sum_probs=60.0
Q ss_pred HHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661 66 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 143 (190)
Q Consensus 66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG 143 (190)
+...++.+|.++. .+-+.+|.+.+.+.+. .+|+|.+-+.. +.. .+...+-++++++.. ..++.+.+.|.
T Consensus 23 v~~~lr~~G~eVi-~LG~~vp~e~i~~~a~~~~~d~V~lS~~~-~~~----~~~~~~~~~~L~~~~---~~~~~i~vGG~ 93 (137)
T PRK02261 23 LDRALTEAGFEVI-NLGVMTSQEEFIDAAIETDADAILVSSLY-GHG----EIDCRGLREKCIEAG---LGDILLYVGGN 93 (137)
T ss_pred HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEcCcc-ccC----HHHHHHHHHHHHhcC---CCCCeEEEECC
Confidence 4455677777753 4556677776666543 37777653333 211 222333333443331 12577888888
Q ss_pred CC------cccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhc
Q 029661 144 VG------PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184 (190)
Q Consensus 144 I~------~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~ 184 (190)
+. .+..+.+.+.|.|.+--+ ..++++.+..+++.++
T Consensus 94 ~~~~~~~~~~~~~~l~~~G~~~vf~~-----~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 94 LVVGKHDFEEVEKKFKEMGFDRVFPP-----GTDPEEAIDDLKKDLN 135 (137)
T ss_pred CCCCccChHHHHHHHHHcCCCEEECc-----CCCHHHHHHHHHHHhc
Confidence 83 234457888897644322 3577888888877654
No 417
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.38 E-value=0.61 Score=41.79 Aligned_cols=66 Identities=26% Similarity=0.378 Sum_probs=47.0
Q ss_pred HHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc
Q 029661 88 SAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 163 (190)
Q Consensus 88 ~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG 163 (190)
++++.+++ .+|.|.+=+.+ |.. ...++.++++|+..+ ++++.++.+.+.+.+..+.++|||++-+|
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~----g~~--~~~~~~i~~i~~~~~----~~~vi~g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAH----GHQ--VKMISAIKAVRALDL----GVPIVAGNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCC----CCc--HHHHHHHHHHHHHCC----CCeEEEeccCCHHHHHHHHHhCCCEEEEC
Confidence 55666655 37887664444 322 456777888777543 46787777999999999999999999755
No 418
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.33 E-value=1 Score=42.72 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=74.5
Q ss_pred HHHHcCCCEEEEccc---------CC-----------Cc----chHHHHHHHHHHh---CCcEEEEEcCCC------CHH
Q 029661 42 DFIKAGADIVSVHCE---------QS-----------ST----IHLHRTLNQIKDL---GAKAGVVLNPAT------SLS 88 (190)
Q Consensus 42 ~~~~~Gad~v~vh~e---------~~-----------~~----~~~~~~i~~i~~~---g~~~g~~i~p~t------~~~ 88 (190)
.+.++|+|+|-+|.- +. +. .-+.++++.+|+. ++.+++=+++.. +.+
T Consensus 559 ~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~ 638 (765)
T PRK08255 559 RAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPD 638 (765)
T ss_pred HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHH
Confidence 457789999999865 20 11 1245788888884 456777777521 222
Q ss_pred H---HHHhhcc--cceEEEEeeecCCCCcccc---h-hhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-C
Q 029661 89 A---IECVLDV--VDLVLIMSVNPGFGGQSFI---E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-A 157 (190)
Q Consensus 89 ~---~~~~~~~--~d~i~~m~v~pG~~gq~~~---~-~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-a 157 (190)
. +.+.++. +|+|-+-+ .++..+... + ......+++|+.. +.++.+-|+|+ ++++.++++.| +
T Consensus 639 ~~~~~~~~l~~~g~d~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pv~~~G~i~~~~~a~~~l~~g~~ 711 (765)
T PRK08255 639 DAVEIARAFKAAGADLIDVSS--GQVSKDEKPVYGRMYQTPFADRIRNEA-----GIATIAVGAISEADHVNSIIAAGRA 711 (765)
T ss_pred HHHHHHHHHHhcCCcEEEeCC--CCCCcCCCCCcCccccHHHHHHHHHHc-----CCEEEEeCCCCCHHHHHHHHHcCCc
Confidence 2 2223332 68876521 111111100 0 1122234444433 46888999997 78999998876 9
Q ss_pred CEEEEcccccCCCCH
Q 029661 158 NALVAGSAVFGAKDY 172 (190)
Q Consensus 158 d~~VvGsaI~~~~dp 172 (190)
|.+-+|+++...++.
T Consensus 712 D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 712 DLCALARPHLADPAW 726 (765)
T ss_pred ceeeEcHHHHhCccH
Confidence 999999999886654
No 419
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=94.32 E-value=1 Score=37.83 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=85.2
Q ss_pred HHHHHHhccCCCCcEEEEEeec--ChH---HHHHHHHHcCCCEEEEcccC----------C-----CcchHHHHHHHHHH
Q 029661 13 PLVVDALRPVTDLPLDVHLMIV--EPE---QRVPDFIKAGADIVSVHCEQ----------S-----STIHLHRTLNQIKD 72 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~--dp~---~~i~~~~~~Gad~v~vh~e~----------~-----~~~~~~~~i~~i~~ 72 (190)
...+++|...+++|+.+|+=.- ++. +.++.+.++|+-++++--.. + +.++..+-|+++++
T Consensus 64 ~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~ 143 (290)
T TIGR02321 64 LEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATA 143 (290)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHH
Confidence 3456667777899999998773 433 34788999999998883210 0 11222344455554
Q ss_pred hCCcEEEEEcCCCC-----------HHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE
Q 029661 73 LGAKAGVVLNPATS-----------LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 140 (190)
Q Consensus 73 ~g~~~g~~i~p~t~-----------~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v 140 (190)
.-...-++|+--|+ +++.+.|.+. +|.|.+ ||.. ...+.++++.+.++ ...++.+
T Consensus 144 a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv----~~~~------~~~~ei~~~~~~~~---~p~pv~~ 210 (290)
T TIGR02321 144 ARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILI----HSRQ------KTPDEILAFVKSWP---GKVPLVL 210 (290)
T ss_pred hCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEe----cCCC------CCHHHHHHHHHhcC---CCCCeEE
Confidence 32223344432222 2445555543 788764 3310 12344555554432 1134433
Q ss_pred eCCCCcc-cHHHHHHcC-CCEEEEcccccCC--CCHHHHHHHHH
Q 029661 141 DGGVGPK-NAYKVIEAG-ANALVAGSAVFGA--KDYAEAIKGIK 180 (190)
Q Consensus 141 dGGI~~e-~~~~~~~aG-ad~~VvGsaI~~~--~dp~~~~~~l~ 180 (190)
-.|-++. +..++.+.| ...++.|+..+.+ ....++++.++
T Consensus 211 ~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~aa~~a~~~~~~~i~ 254 (290)
T TIGR02321 211 VPTAYPQLTEADIAALSKVGIVIYGNHAIRAAVGAVREVFARIR 254 (290)
T ss_pred ecCCCCCCCHHHHHHhcCCcEEEEChHHHHHHHHHHHHHHHHHH
Confidence 3344443 667888888 8999999877654 23334444443
No 420
>PRK09389 (R)-citramalate synthase; Provisional
Probab=94.28 E-value=1.7 Score=39.20 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCEEEEcccCCC--------------cchHHHHHHHHHHhCCcEEEEEc--CCCCHHHHHHhhcc-----
Q 029661 38 QRVPDFIKAGADIVSVHCEQSS--------------TIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV----- 96 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~--------------~~~~~~~i~~i~~~g~~~g~~i~--p~t~~~~~~~~~~~----- 96 (190)
.-++.+.++|++.|++..-..+ .+.+.+.++++|++|.++-+... ..++.+.+.+++..
T Consensus 77 ~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G 156 (488)
T PRK09389 77 VDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG 156 (488)
T ss_pred HHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC
Confidence 3578889999999888643210 12355667888999988766543 33556666555432
Q ss_pred cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661 97 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 97 ~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~ 160 (190)
+|.|.+ |.+.|-..+.+..+.++.+++.. +++|.+ |-|...-|.-..+++||+.+
T Consensus 157 a~~i~l----~DTvG~~~P~~~~~lv~~l~~~~-----~v~l~~H~HND~GlAvANalaAv~aGa~~V 215 (488)
T PRK09389 157 ADRICF----CDTVGILTPEKTYELFKRLSELV-----KGPVSIHCHNDFGLAVANTLAALAAGADQV 215 (488)
T ss_pred CCEEEE----ecCCCCcCHHHHHHHHHHHHhhc-----CCeEEEEecCCccHHHHHHHHHHHcCCCEE
Confidence 566644 45555555556666666666543 245554 55666557778889999964
No 421
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=94.27 E-value=0.36 Score=43.12 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=78.6
Q ss_pred HHcCCCEEEE--cccCCCcchHHHHHHHHHHhC--CcEEEEEcCCCCHHHHHHh-hc-ccceEEEEeeecCCCCccc--c
Q 029661 44 IKAGADIVSV--HCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECV-LD-VVDLVLIMSVNPGFGGQSF--I 115 (190)
Q Consensus 44 ~~~Gad~v~v--h~e~~~~~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~~~~-~~-~~d~i~~m~v~pG~~gq~~--~ 115 (190)
..-|.+.++= |.+..+.+++...|..+|+.+ .++++=+-....++.+.-- +. .+|.|++=+-+-|++-.++ +
T Consensus 269 ~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~ 348 (485)
T COG0069 269 SPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSI 348 (485)
T ss_pred CCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHh
Confidence 3446677765 222224677889999999974 6677767777888766653 32 4899988555544432221 1
Q ss_pred -----hhhHHHHHHHHHHHhhcC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccc
Q 029661 116 -----ESQVKKISDLRRMCLEKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 165 (190)
Q Consensus 116 -----~~~~~ki~~~~~~~~~~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsa 165 (190)
|.- --|.+..+.+..++ ..+.|.+|||++ ...+...+..|||.|=.|++
T Consensus 349 ~~~GiP~e-~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa 405 (485)
T COG0069 349 DHAGIPWE-LGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTA 405 (485)
T ss_pred hcCCchHH-HHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchH
Confidence 111 11444444444433 457899999999 57888889999999999985
No 422
>PRK06739 pyruvate kinase; Validated
Probab=94.10 E-value=1.3 Score=38.18 Aligned_cols=138 Identities=11% Similarity=0.245 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCC--CCHHHHHHhhcccceEEEE----eeecCCC
Q 029661 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPA--TSLSAIECVLDVVDLVLIM----SVNPGFG 110 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~--t~~~~~~~~~~~~d~i~~m----~v~pG~~ 110 (190)
..++...+.|+|+|.+-.-- +.+++.++-+.++++|. .+.+...-+ ..++.+.+++..+|.|++- +++-++.
T Consensus 169 ~di~f~~~~~vD~ia~SFVr-~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e 247 (352)
T PRK06739 169 KDIQFLLEEDVDFIACSFVR-KPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQ 247 (352)
T ss_pred HHHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHH
Confidence 34667788999999997543 35667777777777754 455543333 4468889999999999872 3332211
Q ss_pred CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------Cc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 029661 111 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV--------GP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177 (190)
Q Consensus 111 gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~ 177 (190)
..|..-++|- +.+.+.+. ++-+.-=+ .| ..+..++..|+|.+.+..-=-....|.++++
T Consensus 248 ---~vp~~Qk~Ii---~~c~~~gk--PvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV~ 319 (352)
T PRK06739 248 ---FIPLLQKMMI---QECNRTNT--YVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESVS 319 (352)
T ss_pred ---HHHHHHHHHH---HHHHHhCC--CEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHH
Confidence 1233333332 22222222 33222111 11 1555678889999998743333468999999
Q ss_pred HHHHhhc
Q 029661 178 GIKTSKR 184 (190)
Q Consensus 178 ~l~~~~~ 184 (190)
.+++.+.
T Consensus 320 ~m~~I~~ 326 (352)
T PRK06739 320 TLRLVSE 326 (352)
T ss_pred HHHHHHH
Confidence 9887553
No 423
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.08 E-value=3.1 Score=35.81 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=90.1
Q ss_pred HHHHHhccCCCCcEEEEEeecCh-------------HHHHHHHHHcCCCEEEEcccCCCc-ch---HHHHHHHHHHhCCc
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEP-------------EQRVPDFIKAGADIVSVHCEQSST-IH---LHRTLNQIKDLGAK 76 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp-------------~~~i~~~~~~Gad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~ 76 (190)
..++.+.+..++|+.+||==... .+++..+.+.|.+.|-+=....+. ++ -.++++.++..|+.
T Consensus 77 ~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvs 156 (345)
T cd00946 77 HHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMW 156 (345)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 34455555568999999854432 234444557788888775433221 22 24666777777765
Q ss_pred E----EEE--------E------cCCCCHHHHHHhhcc------cceEE--EEeeecCCCCcccchhhHHHHHHHHHHHh
Q 029661 77 A----GVV--------L------NPATSLSAIECVLDV------VDLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCL 130 (190)
Q Consensus 77 ~----g~~--------i------~p~t~~~~~~~~~~~------~d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~ 130 (190)
+ |-. - ..-|..+...++.+. +|.+. +-++| |...+.-..-.+++++++++.+.
T Consensus 157 VEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~H-G~Y~~~~p~L~~~~L~~I~~~i~ 235 (345)
T cd00946 157 LEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVH-GVYKPGNVKLQPEILGEHQDYVR 235 (345)
T ss_pred EEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccc-cCCCCCCCccCHHHHHHHHHHHH
Confidence 4 221 0 013677777777763 46543 33444 22210011223666676655422
Q ss_pred hc-----CCCCeEEEeCCCC--cccHHHHHHcCCCEEEEcccccC
Q 029661 131 EK-----GVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 131 ~~-----~~~~~i~vdGGI~--~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
+. +.++++..=||-. .+.++++++.|..-+=++|.+..
T Consensus 236 ~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~KiNi~T~l~~ 280 (345)
T cd00946 236 EKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVVKMNIDTDTQW 280 (345)
T ss_pred HhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCeeEEeCcHHHH
Confidence 21 1246777777655 68999999999999999998754
No 424
>PRK02227 hypothetical protein; Provisional
Probab=94.02 E-value=0.78 Score=37.32 Aligned_cols=111 Identities=12% Similarity=0.051 Sum_probs=69.6
Q ss_pred HHhccC-CCCcEEEEEeec-------ChHHHHHHHHHcCCCEEEEc---------ccCCCcchHHHHHHHHHHhCCcEEE
Q 029661 17 DALRPV-TDLPLDVHLMIV-------EPEQRVPDFIKAGADIVSVH---------CEQSSTIHLHRTLNQIKDLGAKAGV 79 (190)
Q Consensus 17 ~~i~~~-~~~~i~~hlmv~-------dp~~~i~~~~~~Gad~v~vh---------~e~~~~~~~~~~i~~i~~~g~~~g~ 79 (190)
++++.. .+..+++-++.. +|..+.+.++++|++.+.+- .+.-+.+++.++++.+|++|+.+|+
T Consensus 106 ~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 106 RAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHhHh
Confidence 334443 466777766654 46778888999999999882 0101245789999999999999999
Q ss_pred EEcCCCC-HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHh
Q 029661 80 VLNPATS-LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL 130 (190)
Q Consensus 80 ~i~p~t~-~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~ 130 (190)
+=+-..+ +..++.+ ..||+-+-+--.+.+ +.-..-..++++++++.+.
T Consensus 186 AGSL~~~dip~L~~l--~pD~lGfRgavC~g~-dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 186 AGSLKFEDIPALKRL--GPDILGVRGAVCGGG-DRTGRIDPELVAELREALR 234 (238)
T ss_pred cccCchhhHHHHHhc--CCCEEEechhccCCC-CcccccCHHHHHHHHHHhh
Confidence 7554333 3444443 479997765544222 1111223455666676654
No 425
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=93.91 E-value=3.2 Score=34.38 Aligned_cols=149 Identities=14% Similarity=0.214 Sum_probs=81.1
Q ss_pred HHhccC-CCCcEEEEEeecCh----HHHHHHHHHcCCCEEEEcccCC-------------C--cchHHHHHHHHHHhCCc
Q 029661 17 DALRPV-TDLPLDVHLMIVEP----EQRVPDFIKAGADIVSVHCEQS-------------S--TIHLHRTLNQIKDLGAK 76 (190)
Q Consensus 17 ~~i~~~-~~~~i~~hlmv~dp----~~~i~~~~~~Gad~v~vh~e~~-------------~--~~~~~~~i~~i~~~g~~ 76 (190)
+++-.. .+.|+.+=+...|| ..|++.+.+.|..+|.=-+-.+ . .+.=-+.++.+++.|+-
T Consensus 73 ~eiLp~v~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~ 152 (268)
T PF09370_consen 73 REILPVVKDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLF 152 (268)
T ss_dssp HHHGGG-SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-E
T ss_pred HhhhhhccCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCe
Confidence 445443 56899999999999 4688999999999886432110 0 00112577888888876
Q ss_pred EE-EEEcCCCCHHHHHHhhc-ccceEE-EEeeecC-CCCcc---cchhhHHHHHHHHHHHhhcCCCCe-EEEeCCCC-cc
Q 029661 77 AG-VVLNPATSLSAIECVLD-VVDLVL-IMSVNPG-FGGQS---FIESQVKKISDLRRMCLEKGVNPW-IEVDGGVG-PK 147 (190)
Q Consensus 77 ~g-~~i~p~t~~~~~~~~~~-~~d~i~-~m~v~pG-~~gq~---~~~~~~~ki~~~~~~~~~~~~~~~-i~vdGGI~-~e 147 (190)
.. .+. ..+..+...+ .+|.|. .|+...| .-|.+ -..++.++++++.+-..+.+.++- +.-.|-|+ |+
T Consensus 153 T~~yvf----~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~ 228 (268)
T PF09370_consen 153 TTAYVF----NEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPE 228 (268)
T ss_dssp E--EE-----SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHH
T ss_pred eeeeec----CHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHH
Confidence 53 333 3344555543 488774 3443322 12322 235667777777776666666654 44556677 78
Q ss_pred cHHHHHHc--CCCEEEEcccccCC
Q 029661 148 NAYKVIEA--GANALVAGSAVFGA 169 (190)
Q Consensus 148 ~~~~~~~a--Gad~~VvGsaI~~~ 169 (190)
.+..+.+. |+++++.||++=+-
T Consensus 229 D~~~~l~~t~~~~Gf~G~Ss~ERl 252 (268)
T PF09370_consen 229 DAQYVLRNTKGIHGFIGASSMERL 252 (268)
T ss_dssp HHHHHHHH-TTEEEEEESTTTTHH
T ss_pred HHHHHHhcCCCCCEEecccchhhc
Confidence 88766543 47999999987653
No 426
>PRK00915 2-isopropylmalate synthase; Validated
Probab=93.81 E-value=1.2 Score=40.41 Aligned_cols=141 Identities=17% Similarity=0.127 Sum_probs=82.3
Q ss_pred HHHHHhccC-CCCcEEEEEeec--ChHHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHHHHhCC
Q 029661 14 LVVDALRPV-TDLPLDVHLMIV--EPEQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQIKDLGA 75 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~--dp~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i~~~g~ 75 (190)
+.+++|.+. .+..+-+..... |....++.+.++|++.|++..-. ++ +.+.+.++.+|++|.
T Consensus 56 ~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~-Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~ 134 (513)
T PRK00915 56 EAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIAT-SPIHMEYKLKMSREEVLEMAVEAVKYARSYTD 134 (513)
T ss_pred HHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECC-cHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345555432 344555533222 11222333347888888876432 11 124578889999999
Q ss_pred cEEEEEc--CCCCHHHHHHhhcc-----cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCC
Q 029661 76 KAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGV 144 (190)
Q Consensus 76 ~~g~~i~--p~t~~~~~~~~~~~-----~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI 144 (190)
++-+... ..++.+.+.+++.. +|.|.+ |.+.|...+..+.+.++.+++.++.. .+.+|++ |.|.
T Consensus 135 ~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l----~DTvG~~~P~~~~~~i~~l~~~~~~~-~~v~l~~H~HND~Gl 209 (513)
T PRK00915 135 DVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI----PDTVGYTTPEEFGELIKTLRERVPNI-DKAIISVHCHNDLGL 209 (513)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE----ccCCCCCCHHHHHHHHHHHHHhCCCc-ccceEEEEecCCCCH
Confidence 9877653 33556655555432 566543 45556555666777788887765421 1245655 5667
Q ss_pred CcccHHHHHHcCCCEE
Q 029661 145 GPKNAYKVIEAGANAL 160 (190)
Q Consensus 145 ~~e~~~~~~~aGad~~ 160 (190)
-..|.-..+++||+.+
T Consensus 210 AvANslaAv~aGa~~V 225 (513)
T PRK00915 210 AVANSLAAVEAGARQV 225 (513)
T ss_pred HHHHHHHHHHhCCCEE
Confidence 6667778889999964
No 427
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=93.74 E-value=1.8 Score=33.83 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh--CCcEEEEEcCCCCHHH-HHHhhc-ccceEEEEeeecCCCCcc
Q 029661 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSA-IECVLD-VVDLVLIMSVNPGFGGQS 113 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~--g~~~g~~i~p~t~~~~-~~~~~~-~~d~i~~m~v~pG~~gq~ 113 (190)
++++.+ +.|.+++-+.... ....-.+.++.+|+. +..++..+...++... ++.+.+ .+|+|.+.... +.
T Consensus 16 ~~~~~l-~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~----~~- 88 (206)
T TIGR03128 16 ELAEKV-ADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA----DD- 88 (206)
T ss_pred HHHHHc-ccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC----CH-
Confidence 455556 7778887773111 011224678888876 5566666543344433 555444 48998754322 11
Q ss_pred cchhhHHHHHHHHHHHhhcCCCCeEEEe--C-CCCcccHHHHHHcCCCEEEEc
Q 029661 114 FIESQVKKISDLRRMCLEKGVNPWIEVD--G-GVGPKNAYKVIEAGANALVAG 163 (190)
Q Consensus 114 ~~~~~~~ki~~~~~~~~~~~~~~~i~vd--G-GI~~e~~~~~~~aGad~~VvG 163 (190)
.. +.++.+.+.++| .++.++ + .-..+.+..+.+.|+|++-+.
T Consensus 89 ---~~---~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 89 ---AT---IKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred ---HH---HHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 11 222333333333 334332 1 111355667778899988664
No 428
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.73 E-value=2.3 Score=34.97 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=77.8
Q ss_pred CcEEEEEeecChH-----HHHHHHHHcCCCEEEEcc-c-------------------CC-CcchHHHHHHHHHHh--CCc
Q 029661 25 LPLDVHLMIVEPE-----QRVPDFIKAGADIVSVHC-E-------------------QS-STIHLHRTLNQIKDL--GAK 76 (190)
Q Consensus 25 ~~i~~hlmv~dp~-----~~i~~~~~~Gad~v~vh~-e-------------------~~-~~~~~~~~i~~i~~~--g~~ 76 (190)
.-+..+++.-+|. ++++.+.+.|||++=+.. . .+ ..+...+.++.+|+. +..
T Consensus 10 ~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 10 GAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 4688888888873 356778899999999863 1 10 011233445555543 333
Q ss_pred EEEE--EcC--CCCHHH-HHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHH
Q 029661 77 AGVV--LNP--ATSLSA-IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 150 (190)
Q Consensus 77 ~g~~--i~p--~t~~~~-~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~ 150 (190)
+.+. .|| ....+. ++.+.+ .+|.+++ .....+...++.+.+.+++...-+.+...-+.+.++
T Consensus 90 lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgvii------------pDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~ 157 (256)
T TIGR00262 90 IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLV------------ADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLK 157 (256)
T ss_pred EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEE------------CCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHH
Confidence 2221 121 011122 222222 1444433 222345556666666677766656677777778887
Q ss_pred HHHHcCC-CEEEEcc-cccCC-----CCHHHHHHHHHHhh
Q 029661 151 KVIEAGA-NALVAGS-AVFGA-----KDYAEAIKGIKTSK 183 (190)
Q Consensus 151 ~~~~aGa-d~~VvGs-aI~~~-----~dp~~~~~~l~~~~ 183 (190)
.+.+..- -+.++++ .++.. ++..+.++++|+..
T Consensus 158 ~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~ 197 (256)
T TIGR00262 158 QIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS 197 (256)
T ss_pred HHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc
Confidence 7766643 1333332 23322 34566777777643
No 429
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=93.67 E-value=2.6 Score=34.68 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=81.4
Q ss_pred CCHHHHHHhcc---CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 11 IGPLVVDALRP---VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 11 ~G~~~v~~i~~---~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
+|.+-++.|++ ..++++....+-.. -++.+.+. +|++-+.... ..+ ..+++++.+.|+.+.+.-.+.-.+
T Consensus 73 ~g~~gl~~l~~~~~~~Gl~~~t~~~d~~---~~~~l~~~-~d~lkI~s~~--~~n-~~LL~~~a~~gkPVilk~G~~~t~ 145 (260)
T TIGR01361 73 LGEEGLKLLRRAADEHGLPVVTEVMDPR---DVEIVAEY-ADILQIGARN--MQN-FELLKEVGKQGKPVLLKRGMGNTI 145 (260)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEeeCChh---hHHHHHhh-CCEEEECccc--ccC-HHHHHHHhcCCCcEEEeCCCCCCH
Confidence 35555555554 36777777444332 34555666 8999888763 333 358888888999888887766334
Q ss_pred HHHHHhhcc-----c-ceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEe----CCCC---cccHHHHHH
Q 029661 88 SAIECVLDV-----V-DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD----GGVG---PKNAYKVIE 154 (190)
Q Consensus 88 ~~~~~~~~~-----~-d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vd----GGI~---~e~~~~~~~ 154 (190)
+.+...++. . ++++..+-...+.+......-+..|..+|+.. +++|..| +|-+ +......+.
T Consensus 146 ~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~-----~~pV~~ds~Hs~G~r~~~~~~~~aAva 220 (260)
T TIGR01361 146 EEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET-----HLPIIVDPSHAAGRRDLVIPLAKAAIA 220 (260)
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh-----CCCEEEcCCCCCCccchHHHHHHHHHH
Confidence 333332221 2 44443321222212122223355666666543 3677774 3322 223445688
Q ss_pred cCCCEEEEccccc
Q 029661 155 AGANALVAGSAVF 167 (190)
Q Consensus 155 aGad~~VvGsaI~ 167 (190)
.|||++++-+-+.
T Consensus 221 ~Ga~gl~iE~H~t 233 (260)
T TIGR01361 221 AGADGLMIEVHPD 233 (260)
T ss_pred cCCCEEEEEeCCC
Confidence 9999988887665
No 430
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=93.60 E-value=1.8 Score=34.80 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=65.5
Q ss_pred HHHHHHcCCCEEEEcccCC-----CcchHHHHHHHHHHh--CCcEEEEEc-CCCCHHHHHHhhc-----ccceEEEEeee
Q 029661 40 VPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDL--GAKAGVVLN-PATSLSAIECVLD-----VVDLVLIMSVN 106 (190)
Q Consensus 40 i~~~~~~Gad~v~vh~e~~-----~~~~~~~~i~~i~~~--g~~~g~~i~-p~t~~~~~~~~~~-----~~d~i~~m~v~ 106 (190)
.+.+.+.||+-+=+-.-.+ ..+.+.+.++.+++. +..+=+.+. +.-+.+.+....+ .+|+|- ..
T Consensus 80 ~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIK---Ts 156 (221)
T PRK00507 80 AKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVK---TS 156 (221)
T ss_pred HHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEE---cC
Confidence 4667888998776632211 122344455555553 433333332 2222233333221 378663 34
Q ss_pred cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcCCCEE
Q 029661 107 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 107 pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aGad~~ 160 (190)
.|++ ....+++.++.+++..+ .++.|-+.|||+ .+++.+++++||+-+
T Consensus 157 TG~~---~~gat~~~v~~m~~~~~---~~~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 157 TGFS---TGGATVEDVKLMRETVG---PRVGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred CCCC---CCCCCHHHHHHHHHHhC---CCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 4653 12356777777777664 347899999999 799999999999976
No 431
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.53 E-value=0.38 Score=43.42 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=54.7
Q ss_pred CcEEEEEcCC-CCHHHHHHhhcc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHH
Q 029661 75 AKAGVVLNPA-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK 151 (190)
Q Consensus 75 ~~~g~~i~p~-t~~~~~~~~~~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~ 151 (190)
..+|.++.+. ...++.+.+++. +|.|.+=+. .| ....+++.++++|+..++ ..| +.|+|. .+....
T Consensus 237 l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~----~g--~~~~~~~~i~~ik~~~p~----~~v-i~g~v~t~e~a~~ 305 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLVKAGVDVVVLDSS----QG--DSIYQLEMIKYIKKTYPE----LDV-IGGNVVTMYQAQN 305 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCC----CC--CcHHHHHHHHHHHHhCCC----CcE-EEecCCCHHHHHH
Confidence 4467788764 336788887764 898876332 23 233567778888876542 344 567776 799999
Q ss_pred HHHcCCCEEEEc
Q 029661 152 VIEAGANALVAG 163 (190)
Q Consensus 152 ~~~aGad~~VvG 163 (190)
+.++|||++++|
T Consensus 306 a~~aGaD~i~vg 317 (505)
T PLN02274 306 LIQAGVDGLRVG 317 (505)
T ss_pred HHHcCcCEEEEC
Confidence 999999999886
No 432
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=93.50 E-value=0.95 Score=39.41 Aligned_cols=149 Identities=18% Similarity=0.131 Sum_probs=79.1
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHh
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV 93 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~ 93 (190)
+.++.+.+.++.|+.+ +..||+-+-+.+-.++-.-..++.-. .++.+++.+.++++|..+++.- ..+++.++++
T Consensus 88 ~~vk~V~~a~~~PLIL--~~~D~evl~aale~~~~~kpLL~aAt--~eNyk~m~~lA~~y~~pl~v~s--p~Dln~lk~L 161 (386)
T PF03599_consen 88 KAVKKVAEAVDVPLIL--CGCDPEVLKAALEACAGKKPLLYAAT--EENYKAMAALAKEYGHPLIVSS--PIDLNLLKQL 161 (386)
T ss_dssp HHHHHHHHC-SSEEEE--ESSHHHHHHHHHHHTTTS--EEEEEB--TTTHHHHHHHHHHCT-EEEEE---SSCHHHHHHH
T ss_pred HHHHHHHHhcCCCEEE--EeCCHHHHHHHHHHhCcCCcEEeEcC--HHHHHHHHHHHHHcCCeEEEEe--cccHHHHHHH
Confidence 4566666667888887 77888866555555555566665543 5689999999999998876633 2356555554
Q ss_pred hc---c--c-ceEEEEeeecCCCC-cccchhhHHHHHHHHHHHh--hcCCCCeEEEeCCCCcccHH-----HHHHcCCCE
Q 029661 94 LD---V--V-DLVLIMSVNPGFGG-QSFIESQVKKISDLRRMCL--EKGVNPWIEVDGGVGPKNAY-----KVIEAGANA 159 (190)
Q Consensus 94 ~~---~--~-d~i~~m~v~pG~~g-q~~~~~~~~ki~~~~~~~~--~~~~~~~i~vdGGI~~e~~~-----~~~~aGad~ 159 (190)
-. . + |.|+ +||... -.-..+++....++|..-- ++-+.+++ +..+.+....+ .++..+||+
T Consensus 162 n~~l~~~Gv~dIVl----Dpgt~~lGyGie~t~s~~~rIRraALk~Dr~lgyPi-I~~~~~aw~~~e~~~~~~i~kYa~I 236 (386)
T PF03599_consen 162 NIKLTELGVKDIVL----DPGTRALGYGIEYTYSNMERIRRAALKGDRPLGYPI-ITFPTEAWKAKEADAVAFIAKYASI 236 (386)
T ss_dssp HHHHHTTT-GGEEE----E---SSTTTTHHHHHHHHHHHHHHHHHT-GGG-S-B-EECHHHCTCCHHHHHHHHHHTT-SE
T ss_pred HHHHHhcCcccEEe----cCCcccchhHHHHHHHHHHHHHHHHhccCcccCCce-eecchhccchhHHHHHHHHHhhCcE
Confidence 32 2 2 4443 666542 1123455555555554422 23355676 34555532221 367889999
Q ss_pred EEEcccccCCCCHHHHHHH
Q 029661 160 LVAGSAVFGAKDYAEAIKG 178 (190)
Q Consensus 160 ~VvGsaI~~~~dp~~~~~~ 178 (190)
+|+- ..++.+.+-.
T Consensus 237 iVl~-----~~~~~~~lpl 250 (386)
T PF03599_consen 237 IVLH-----DMEPWELLPL 250 (386)
T ss_dssp EEES--------HHHHHHH
T ss_pred EEEc-----CCCHHHHHHH
Confidence 9875 3566655544
No 433
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=93.47 E-value=3.1 Score=34.17 Aligned_cols=61 Identities=26% Similarity=0.302 Sum_probs=39.8
Q ss_pred HHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEc
Q 029661 15 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 82 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~ 82 (190)
.|+.|++..+.|+-+| +.+|. .++.+.+.|+++|- +-.+. .+ .+.++.++++|..+.+.-.
T Consensus 67 ~v~~i~~~~~~plSID--T~~~~-v~e~al~~G~~iINdisg~~---~~-~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 67 VLEALRGELDVLISVD--TFRAE-VARAALEAGADIINDVSGGS---DD-PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHhcCCCcEEEe--CCCHH-HHHHHHHhCCCEEEeCCCCC---CC-hHHHHHHHHcCCCEEEECC
Confidence 4566776556776554 34555 56677778999877 44442 12 5678888999988877543
No 434
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=93.47 E-value=2.5 Score=37.88 Aligned_cols=139 Identities=13% Similarity=0.161 Sum_probs=83.6
Q ss_pred HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCC-Ccccc
Q 029661 40 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFG-GQSFI 115 (190)
Q Consensus 40 i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~-gq~~~ 115 (190)
++.+.+.|+|+|.+.--. +.+++..+-+.+.+.+ ..+.+...-+|+ ++.+.+++...|-+++-.-+-|.. | .
T Consensus 177 l~~~~~~~~d~I~lskV~-sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~lg---~ 252 (473)
T TIGR01064 177 LKFGVEQGVDMVAASFVR-TAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIP---A 252 (473)
T ss_pred HHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhcC---c
Confidence 566788999999997443 3556776777776655 244444333555 577888887778665522221111 1 1
Q ss_pred hhhHHHHHHHHHHHhhcCCCCeEEEeC--------CC-----CcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661 116 ESQVKKISDLRRMCLEKGVNPWIEVDG--------GV-----GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182 (190)
Q Consensus 116 ~~~~~ki~~~~~~~~~~~~~~~i~vdG--------GI-----~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~ 182 (190)
++...-.+++-......+. +..+.. .- ....+..++..|+|.+.+++-..-...|.++++.+++.
T Consensus 253 ~~l~~~~~~ii~aaraag~--pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I 330 (473)
T TIGR01064 253 EEVPIAQKKMIRKCNRAGK--PVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKI 330 (473)
T ss_pred HHHHHHHHHHHHHHHHcCC--CEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHH
Confidence 2233223333333333332 222222 11 12467778888999999998777668999999998875
Q ss_pred hc
Q 029661 183 KR 184 (190)
Q Consensus 183 ~~ 184 (190)
+.
T Consensus 331 ~~ 332 (473)
T TIGR01064 331 AK 332 (473)
T ss_pred HH
Confidence 53
No 435
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=93.44 E-value=1.1 Score=38.12 Aligned_cols=119 Identities=11% Similarity=0.066 Sum_probs=72.0
Q ss_pred ChHHHHH---HHHHcCCCEEEEcccCCC-----cchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhcccceEEEE
Q 029661 35 EPEQRVP---DFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIM 103 (190)
Q Consensus 35 dp~~~i~---~~~~~Gad~v~vh~e~~~-----~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~~~d~i~~m 103 (190)
+|+.+.+ .+.+.|.+.+=+|.-... .+...+.++++|+. +..+.+..|...+.+...++++..+-.-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~-- 216 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYD-- 216 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccC--
Confidence 4665544 456789999999865311 12234667777773 5677777887777766666654432110
Q ss_pred eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-CCEEEEc
Q 029661 104 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 163 (190)
Q Consensus 104 ~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-ad~~VvG 163 (190)
+.+--|++.+..++.++++|+.. +++|..|..+. ++.+..+++.| +|++.+-
T Consensus 217 ---i~~iEqP~~~~~~~~~~~l~~~~-----~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 217 ---LFWFEEPVPPDDLEGLARLRQAT-----SVPIAAGENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred ---CCeEcCCCCccCHHHHHHHHHhC-----CCCEEeccccccHHHHHHHHHhCCCCEEecC
Confidence 11123445544455566666542 46888888886 78888777654 6766543
No 436
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=93.44 E-value=3.4 Score=33.29 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=93.5
Q ss_pred HHHHHhccC-C-CCcEEEEEeecChHHHHHHH---H-HcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661 14 LVVDALRPV-T-DLPLDVHLMIVEPEQRVPDF---I-KAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 86 (190)
Q Consensus 14 ~~v~~i~~~-~-~~~i~~hlmv~dp~~~i~~~---~-~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~ 86 (190)
+.+++|++. + +.++.+...-.|.+..++++ . ..|-+.+. ++.- .+--+.++.+++.|+++-+.+-- ++
T Consensus 42 ~~~~~i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~~~~~~nv~VKIP~T----~~Gl~Ai~~L~~~Gi~vn~T~if-s~ 116 (222)
T PRK12656 42 ERIREVREIIGDEASIHVQVVAQDYEGILKDAHEIRRQCGDDVYIKVPVT----PAGLAAIKTLKAEGYHITATAIY-TV 116 (222)
T ss_pred HHHHHHHHHhCCCCcEEEEEEECCHHHHHHHHHHHHHHhCCCEEEEeCCC----HHHHHHHHHHHHCCCceEEeeeC-CH
Confidence 456667665 3 35676666667777766553 2 34544444 3432 23446777888889988765431 22
Q ss_pred HHHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEcccc
Q 029661 87 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 166 (190)
Q Consensus 87 ~~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI 166 (190)
-+.+.-....++||. ..-|--. .......+.++++++++...+++.+|-+.-=-+++++-++..+|+|.+-++-.+
T Consensus 117 ~Qa~~Aa~aGa~yvs---PyvgRi~-d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~~v 192 (222)
T PRK12656 117 FQGLLAIEAGADYLA---PYYNRME-NLNIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAGPDV 192 (222)
T ss_pred HHHHHHHHCCCCEEe---cccchhh-hcCCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecCHHH
Confidence 222222334567763 2222100 001112456788888887777788885555455899999999999999999777
Q ss_pred cC----CCCHHHHHHHHH
Q 029661 167 FG----AKDYAEAIKGIK 180 (190)
Q Consensus 167 ~~----~~dp~~~~~~l~ 180 (190)
++ .+-..+.++.+.
T Consensus 193 l~~l~~~p~t~~~~~~F~ 210 (222)
T PRK12656 193 FEAAFAMPSIQKAVDDFA 210 (222)
T ss_pred HHHHhcCCcHHHHHHHHH
Confidence 64 344455555553
No 437
>PLN02858 fructose-bisphosphate aldolase
Probab=93.39 E-value=1.9 Score=43.71 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=96.0
Q ss_pred hccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC-cch---HHHHHHHHHHhCCcE----EEE--E------c
Q 029661 19 LRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKA----GVV--L------N 82 (190)
Q Consensus 19 i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~-~~~---~~~~i~~i~~~g~~~----g~~--i------~ 82 (190)
+.+..++|+-+||==....+.+..+.++|.+.|-+=....+ .++ -.++++.++.+|+.+ |-. - .
T Consensus 1164 ~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~ 1243 (1378)
T PLN02858 1164 AAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVE 1243 (1378)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccc
Confidence 33346789999985554456788999999999988544322 122 356777788877654 221 0 0
Q ss_pred ----CCCCHHHHHHhhcc--cceEE--EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--cccHHHH
Q 029661 83 ----PATSLSAIECVLDV--VDLVL--IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKV 152 (190)
Q Consensus 83 ----p~t~~~~~~~~~~~--~d~i~--~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~e~~~~~ 152 (190)
.-|..+..+++++. +|.+. +-++| |.....-..--+++++++++.+.. .++++..=||-. .+.++++
T Consensus 1244 ~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~H-G~Y~~~~p~l~~~~l~~i~~~~~~--~~vpLVlHGgSG~~~~~~~~a 1320 (1378)
T PLN02858 1244 EYEAKLTDVDQAKEFIDETGIDALAVCIGNVH-GKYPASGPNLRLDLLKELRALSSK--KGVLLVLHGASGLPESLIKEC 1320 (1378)
T ss_pred ccccCCCCHHHHHHHHHhcCCcEEeeeccccc-ccCCCCCCccCHHHHHHHHHHhcC--CCCcEEEeCCCCCCHHHHHHH
Confidence 13566777787764 78764 33344 222110122347778888887642 247888888765 6899999
Q ss_pred HHcCCCEEEEcccccC
Q 029661 153 IEAGANALVAGSAVFG 168 (190)
Q Consensus 153 ~~aGad~~VvGsaI~~ 168 (190)
++.|..-|=++|.+..
T Consensus 1321 i~~Gi~KiNi~T~~~~ 1336 (1378)
T PLN02858 1321 IENGVRKFNVNTEVRT 1336 (1378)
T ss_pred HHcCCeEEEeCHHHHH
Confidence 9999999999998754
No 438
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=93.33 E-value=3.5 Score=33.14 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=93.6
Q ss_pred HHHHHhccCC-C-CcEEEEEeecChHHHHHH---HHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 14 LVVDALRPVT-D-LPLDVHLMIVEPEQRVPD---FIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 14 ~~v~~i~~~~-~-~~i~~hlmv~dp~~~i~~---~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
+.+++|++.. + -++.+...-.|.+..+++ +.+.+-+.++ ++. ...=-+.++.+++.|+++-+...- +..
T Consensus 41 ~~~~~i~~~~~~~~~v~~Qv~~~d~e~mi~ea~~l~~~~~ni~IKIP~----T~~Gl~A~~~L~~~GI~vn~T~vf-s~~ 115 (220)
T PRK12653 41 VVLPQLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIADIVVKVPV----TAEGLAAIKMLKAEGIPTLGTAVY-GAA 115 (220)
T ss_pred HHHHHHHHHhCCCCcEEEEEecCCHHHHHHHHHHHHHhCCCEEEEeCC----CHHHHHHHHHHHHcCCCeeEEEec-CHH
Confidence 3456666542 2 256655555677666554 4555555443 332 222346777788889888664432 222
Q ss_pred HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661 88 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 88 ~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~ 167 (190)
+.+......++||.. .-|--. ......++.++++++++..++++..|-+..=-|.+++.++..+|+|.+-+.-.++
T Consensus 116 Qa~~Aa~aGa~yIsp---yvgR~~-~~g~dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12653 116 QGLLSALAGAEYVAP---YVNRID-AQGGSGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVA 191 (220)
T ss_pred HHHHHHhcCCcEEEe---ecChHh-hcCCChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 222222345777632 222110 1112345667888888877677788765555558888888899999999997766
Q ss_pred C----CCCHHHHHHHHHH
Q 029661 168 G----AKDYAEAIKGIKT 181 (190)
Q Consensus 168 ~----~~dp~~~~~~l~~ 181 (190)
+ .+...+.++.+.+
T Consensus 192 ~~l~~~p~t~~~~~~F~~ 209 (220)
T PRK12653 192 QQMISYPAVDAAVAKFEQ 209 (220)
T ss_pred HHHHcCCchHHHHHHHHH
Confidence 4 4555666666654
No 439
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.28 E-value=3 Score=33.27 Aligned_cols=129 Identities=18% Similarity=0.259 Sum_probs=76.4
Q ss_pred HHHHHHcCCCEEEE-ccc-----CCCcchHHHHHHHHHHhCCcEEEEEcCCCC-------HH----HHHHhhccc-ce-E
Q 029661 40 VPDFIKAGADIVSV-HCE-----QSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDVV-DL-V 100 (190)
Q Consensus 40 i~~~~~~Gad~v~v-h~e-----~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~-------~~----~~~~~~~~~-d~-i 100 (190)
.+++.++|+++|++ |.| -.+++.+.+-.+.+...|.++...|.-.-. .+ .+..+.+.+ |. -
T Consensus 79 ~~mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~n 158 (247)
T KOG1643|consen 79 AEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSN 158 (247)
T ss_pred HHHHHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHHHHHhcCCccc
Confidence 67789999999998 322 112455677778888999998887752211 11 122222222 11 0
Q ss_pred EEEeeec----CCCCcccchhhHHHHHHHHHHHhhc-----CCCCeEEEeCCCCcccHHHHH-HcCCCEEEEcccccC
Q 029661 101 LIMSVNP----GFGGQSFIESQVKKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFG 168 (190)
Q Consensus 101 ~~m~v~p----G~~gq~~~~~~~~ki~~~~~~~~~~-----~~~~~i~vdGGI~~e~~~~~~-~aGad~~VvGsaI~~ 168 (190)
++..-+| |++--.-+.+.-+--..+|+...++ ....+|.-.|.+|..|.+++. +.-.|+|.+|.+=.+
T Consensus 159 iviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g~N~~el~~~~diDGFLVGGaSLK 236 (247)
T KOG1643|consen 159 IVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCKELAKKPDIDGFLVGGASLK 236 (247)
T ss_pred eEEEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEeccccccccHHHhcccccccceEEcCcccC
Confidence 1223344 5432222333344445566665432 223578899999999988774 456899999987665
No 440
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=93.25 E-value=4.1 Score=33.65 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=75.0
Q ss_pred HHHHHHcCCCEEEEcccCCC--cchHHHHHHHHH-HhCCcEEEEEc-CCCCHHHHHHhhc-----ccceEEEEeeecCCC
Q 029661 40 VPDFIKAGADIVSVHCEQSS--TIHLHRTLNQIK-DLGAKAGVVLN-PATSLSAIECVLD-----VVDLVLIMSVNPGFG 110 (190)
Q Consensus 40 i~~~~~~Gad~v~vh~e~~~--~~~~~~~i~~i~-~~g~~~g~~i~-p~t~~~~~~~~~~-----~~d~i~~m~v~pG~~ 110 (190)
++.+.+.|+|.|++-.-++. ....-++.+.++ +.|+.+..=+. -+.+...++.++. .++-|++++-+|-.+
T Consensus 21 ~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~ 100 (272)
T TIGR00676 21 VDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPKG 100 (272)
T ss_pred HHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 56688899999999755421 122334556666 45888865333 2334334444432 267777766665432
Q ss_pred C-----cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc------c-------HHHHHHcCCCEEEEcccccCCCCH
Q 029661 111 G-----QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK------N-------AYKVIEAGANALVAGSAVFGAKDY 172 (190)
Q Consensus 111 g-----q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e------~-------~~~~~~aGad~~VvGsaI~~~~dp 172 (190)
+ ..|. ...+.|+.++++.+ ++.| .++..|| + +++=+++||| +++--.+|..+..
T Consensus 101 ~~~~~~~~f~-~a~~Li~~i~~~~~----~f~i--g~a~~Peghp~~~~~~~~~~~L~~K~~aGA~-f~iTQ~~fd~~~~ 172 (272)
T TIGR00676 101 EGTPTPGGFN-YASELVEFIRNEFG----DFDI--GVAAYPEKHPEAPNLEEDIENLKRKVDAGAD-YAITQLFFDNDDY 172 (272)
T ss_pred CCCCCCCCCC-CHHHHHHHHHHhcC----CeeE--EEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC-eEeeccccCHHHH
Confidence 2 2344 56777777766532 2444 4444332 1 2222479999 5556677776555
Q ss_pred HHHHHHHHH
Q 029661 173 AEAIKGIKT 181 (190)
Q Consensus 173 ~~~~~~l~~ 181 (190)
.+.++++++
T Consensus 173 ~~~~~~~~~ 181 (272)
T TIGR00676 173 YRFVDRCRA 181 (272)
T ss_pred HHHHHHHHH
Confidence 555555544
No 441
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=93.24 E-value=1.2 Score=39.96 Aligned_cols=116 Identities=15% Similarity=0.216 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCEEEEcccCCC---cchHHHHHHHHHH-------h-CCcEEEEEcCC-CCHHHHHHhhc-ccceEEEEe
Q 029661 38 QRVPDFIKAGADIVSVHCEQSS---TIHLHRTLNQIKD-------L-GAKAGVVLNPA-TSLSAIECVLD-VVDLVLIMS 104 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~~---~~~~~~~i~~i~~-------~-g~~~g~~i~p~-t~~~~~~~~~~-~~d~i~~m~ 104 (190)
+..+.+.+.+.+.+.+--+.+. .-+...+++.... . ...++-++.+. .+.+.++.+++ .+|.+.+
T Consensus 169 eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdvivv-- 246 (486)
T PRK05567 169 EALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDVLVV-- 246 (486)
T ss_pred HHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCEEEE--
Confidence 4456677777777766443210 1133444443321 1 12344444422 34677777665 4886533
Q ss_pred eecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc
Q 029661 105 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 163 (190)
Q Consensus 105 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG 163 (190)
+.. .|+ ....++.++++|+..+ +.++.+.++.+.+++..+.++|||++.+|
T Consensus 247 -D~a-~g~--~~~vl~~i~~i~~~~p----~~~vi~g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 247 -DTA-HGH--SEGVLDRVREIKAKYP----DVQIIAGNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred -ECC-CCc--chhHHHHHHHHHhhCC----CCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence 211 132 2346777777776542 46788888899999999999999999886
No 442
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.13 E-value=3.3 Score=34.27 Aligned_cols=142 Identities=17% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCHHHHHHhccC---CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 11 IGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 11 ~G~~~v~~i~~~---~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
+|.+.++.++++ .++++....+-.. .++.+.+. +|++-+.... ..+ ..+++++-+.|+.+++.-...-.+
T Consensus 75 ~g~~gl~~l~~~~~~~Gl~~~te~~d~~---~~~~l~~~-vd~~kIga~~--~~n-~~LL~~~a~~gkPV~lk~G~~~s~ 147 (266)
T PRK13398 75 LGEEGLKILKEVGDKYNLPVVTEVMDTR---DVEEVADY-ADMLQIGSRN--MQN-FELLKEVGKTKKPILLKRGMSATL 147 (266)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeeCChh---hHHHHHHh-CCEEEECccc--ccC-HHHHHHHhcCCCcEEEeCCCCCCH
Confidence 455566666553 6777777555433 34445566 7889888764 333 357888888898888877766344
Q ss_pred HHHHH---hhc---ccceEEEEeeecCC-CCcccchhh--HHHHHHHHHHHhhcCCCCeEEEeCC--CC-----cccHHH
Q 029661 88 SAIEC---VLD---VVDLVLIMSVNPGF-GGQSFIESQ--VKKISDLRRMCLEKGVNPWIEVDGG--VG-----PKNAYK 151 (190)
Q Consensus 88 ~~~~~---~~~---~~d~i~~m~v~pG~-~gq~~~~~~--~~ki~~~~~~~~~~~~~~~i~vdGG--I~-----~e~~~~ 151 (190)
+.+.. ++. .-+.+++ +-|+ +...+.... +..+..+|+. ++++|.+|-+ .+ +.....
T Consensus 148 ~e~~~A~e~i~~~Gn~~i~L~---~rG~~t~~~Y~~~~vdl~~i~~lk~~-----~~~pV~~D~sHs~G~~~~v~~~~~a 219 (266)
T PRK13398 148 EEWLYAAEYIMSEGNENVVLC---ERGIRTFETYTRNTLDLAAVAVIKEL-----SHLPIIVDPSHATGRRELVIPMAKA 219 (266)
T ss_pred HHHHHHHHHHHhcCCCeEEEE---ECCCCCCCCCCHHHHHHHHHHHHHhc-----cCCCEEEeCCCcccchhhHHHHHHH
Confidence 33322 222 1244443 3333 111122222 3334444433 3467888633 23 334556
Q ss_pred HHHcCCCEEEEccccc
Q 029661 152 VIEAGANALVAGSAVF 167 (190)
Q Consensus 152 ~~~aGad~~VvGsaI~ 167 (190)
.+.+|||++++=+-+.
T Consensus 220 Ava~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 220 AIAAGADGLMIEVHPE 235 (266)
T ss_pred HHHcCCCEEEEeccCC
Confidence 7889999999887765
No 443
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=93.04 E-value=1.6 Score=33.82 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCcEEE--EEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661 64 HRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 139 (190)
Q Consensus 64 ~~~i~~i~~~g~~~g~--~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~ 139 (190)
...+..+|++|+.+.- ++-.+..++...+.+. .+|.|-+ -||. .|..+++| .+. .+.+|-
T Consensus 85 ~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEv---LPGv-----~Pkvi~~i---~~~-----t~~piI 148 (181)
T COG1954 85 SNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEV---LPGV-----MPKVIKEI---TEK-----THIPII 148 (181)
T ss_pred HHHHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEE---cCcc-----cHHHHHHH---HHh-----cCCCEE
Confidence 3568888999998863 4444455555444443 4788865 4772 44444333 332 346774
Q ss_pred EeCCCC-cccHHHHHHcCCCEE
Q 029661 140 VDGGVG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 140 vdGGI~-~e~~~~~~~aGad~~ 160 (190)
.+|=|. .|.+.++.++||-.+
T Consensus 149 AGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 149 AGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred eccccccHHHHHHHHHhCcEEE
Confidence 444455 588999999998654
No 444
>PRK09206 pyruvate kinase; Provisional
Probab=93.03 E-value=3.6 Score=36.92 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=84.4
Q ss_pred HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC-CcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCCCccc-
Q 029661 39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFGGQSF- 114 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g-~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~gq~~- 114 (190)
.++...+.|+|+|.+-.-- +.+++.++-+.+.+.| -.+.+...-+|+ ++.+.+++..+|-|++- ||-=|...
T Consensus 177 di~f~~~~~vD~ia~SFVr-~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgImVa---RGDLgvelg 252 (470)
T PRK09206 177 DLIFGCEQGVDFVAASFIR-KRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVA---RGDLGVEIP 252 (470)
T ss_pred HHHHHHHcCCCEEEEcCCC-CHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEEC---cchhhhhcC
Confidence 4666789999999986543 3456777777777766 356665554554 68889999889998862 22112111
Q ss_pred chhhHHHHHHHHHHHhhcCCCCeEEEeCCC----------C-c--ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 115 IESQVKKISDLRRMCLEKGVNPWIEVDGGV----------G-P--KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 115 ~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI----------~-~--e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
.+......+++-+.+.+.+. ++-+.-=+ | . ..+..++.-|+|.+.+..-=-....|.++++.+.+
T Consensus 253 ~e~vp~~qk~ii~~~~~~gk--pvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~ 330 (470)
T PRK09206 253 VEEVIFAQKMMIEKCNRARK--VVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMAT 330 (470)
T ss_pred HHHHHHHHHHHHHHHHHcCC--CEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHH
Confidence 23333344444444444433 22222211 1 1 14556777899999885433334688999988877
Q ss_pred hhc
Q 029661 182 SKR 184 (190)
Q Consensus 182 ~~~ 184 (190)
.+.
T Consensus 331 I~~ 333 (470)
T PRK09206 331 ICE 333 (470)
T ss_pred HHH
Confidence 553
No 445
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=92.96 E-value=4.9 Score=34.42 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=97.8
Q ss_pred HHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCC-----------CcchHHHHHHHHHHhCCcE--EEE
Q 029661 14 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDLGAKA--GVV 80 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~-----------~~~~~~~~i~~i~~~g~~~--g~~ 80 (190)
+.++.+++.++.++-+-+=..+ .+..++++++|+|.+.--.|+. +-++--.+++.+|+.|+++ |..
T Consensus 122 ~~v~~Vk~~~~le~c~slG~l~-~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI 200 (335)
T COG0502 122 EAIKAVKEELGLEVCASLGMLT-EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGI 200 (335)
T ss_pred HHHHHHHHhcCcHHhhccCCCC-HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceE
Confidence 3455556555655554443333 3467889999999998755541 1133457888999999998 455
Q ss_pred EcCCCCH-HHHHH---hhc--ccceEEEEeeec--CCC-C-ccc-c-hhhHHHHHHHHHHHhhcCCCCeEEEeCCCC---
Q 029661 81 LNPATSL-SAIEC---VLD--VVDLVLIMSVNP--GFG-G-QSF-I-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG--- 145 (190)
Q Consensus 81 i~p~t~~-~~~~~---~~~--~~d~i~~m~v~p--G~~-g-q~~-~-~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--- 145 (190)
+...-+. +++.- +.+ .+|-|=++..+| |+- + ++- . -+.++-|.-.|=+.++ ..|=+.||..
T Consensus 201 ~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~----~~Ir~s~gr~~~~ 276 (335)
T COG0502 201 VGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPK----SMIRLSAGRETML 276 (335)
T ss_pred ecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCc----ceeEccCCccccc
Confidence 6555443 33332 222 167787777665 542 1 111 1 2335556666666654 4565667765
Q ss_pred cccHHHHHHcCCCEEEEcc-cccCC-CCHHHHHHHHHH
Q 029661 146 PKNAYKVIEAGANALVAGS-AVFGA-KDYAEAIKGIKT 181 (190)
Q Consensus 146 ~e~~~~~~~aGad~~VvGs-aI~~~-~dp~~~~~~l~~ 181 (190)
++....+..+|||.+.+|- .++.. .++++-.+.+++
T Consensus 277 ~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~ 314 (335)
T COG0502 277 PELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKD 314 (335)
T ss_pred HHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHH
Confidence 4666778899999999997 66643 455544444444
No 446
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.96 E-value=0.28 Score=40.80 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=43.6
Q ss_pred CCHHHHHHhccCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcE
Q 029661 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA 77 (190)
Q Consensus 11 ~G~~~v~~i~~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~ 77 (190)
-|.++++++|+.++.|+.-+.|... .++.+.+. +|++=+.+.. . .-..+++++-+.|+-+
T Consensus 74 eGL~iL~~vk~~~glpvvTeV~~~~---q~~~vae~-~DilQIgAr~--~-rqtdLL~a~~~tgkpV 133 (290)
T PLN03033 74 EGLKILEKVKVAYDLPIVTDVHESS---QCEAVGKV-ADIIQIPAFL--C-RQTDLLVAAAKTGKII 133 (290)
T ss_pred HHHHHHHHHHHHHCCceEEeeCCHH---HHHHHHhh-CcEEeeCcHH--H-HHHHHHHHHHccCCeE
Confidence 3667888888889999999877654 56677776 6999999874 2 2356777777766543
No 447
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=92.89 E-value=0.77 Score=37.27 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=31.5
Q ss_pred hHHHHHHHHHcCCCEEEE---cccCCCcchHHHHHHHHHHhCCcE
Q 029661 36 PEQRVPDFIKAGADIVSV---HCEQSSTIHLHRTLNQIKDLGAKA 77 (190)
Q Consensus 36 p~~~i~~~~~~Gad~v~v---h~e~~~~~~~~~~i~~i~~~g~~~ 77 (190)
|.++++.+..+|.|.+++ |...-..+-+.++++.+++.|+..
T Consensus 64 ~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~ 108 (250)
T PF09587_consen 64 PPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPY 108 (250)
T ss_pred CHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcE
Confidence 455789999999999998 533211345778999999999774
No 448
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.78 E-value=3.1 Score=30.89 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=53.0
Q ss_pred HHHHHHHhCCcEEEEEcCCCCHHHHHHhh-c-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEEeC
Q 029661 66 TLNQIKDLGAKAGVVLNPATSLSAIECVL-D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDG 142 (190)
Q Consensus 66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~vdG 142 (190)
+...++.+|.++. .+-...|.+.+-+-+ + .+|.|.+-+.. |. +...++++.+.+.+++. +..+.+.|
T Consensus 21 v~~~l~~~GfeVi-~LG~~v~~e~~v~aa~~~~adiVglS~l~-~~--------~~~~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 21 LDHAFTNAGFNVV-NLGVLSPQEEFIKAAIETKADAILVSSLY-GH--------GEIDCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred HHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEeccc-cc--------CHHHHHHHHHHHHHCCCCCCEEEecC
Confidence 3445566777653 334445554433322 2 47777653332 21 22234444444444543 34444444
Q ss_pred C--CCcccHH----HHHHcCCCEEEEcccccCC-CCHHHHHHHHHHhh
Q 029661 143 G--VGPKNAY----KVIEAGANALVAGSAVFGA-KDYAEAIKGIKTSK 183 (190)
Q Consensus 143 G--I~~e~~~----~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~~~~ 183 (190)
+ |.++... ++.+.|.|.+ |.. ..+++.+..+++.+
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~v------F~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRV------FAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEE------ECcCCCHHHHHHHHHHHh
Confidence 4 3444443 5889997644 433 46777788887755
No 449
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=92.69 E-value=5.9 Score=34.13 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=94.1
Q ss_pred HHHHhccCC-CCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCC--------cchH---HHHHHHHHHhCCcE----E
Q 029661 15 VVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS--------TIHL---HRTLNQIKDLGAKA----G 78 (190)
Q Consensus 15 ~v~~i~~~~-~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~--------~~~~---~~~i~~i~~~g~~~----g 78 (190)
.++.+.+.. ++|+.+||==..-.+.+..+.++|.+.|-+=....+ .+++ .++++.++..|+.+ |
T Consensus 65 ~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG 144 (347)
T PRK13399 65 MVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELG 144 (347)
T ss_pred HHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 445555444 589999985443455788999999999988544211 1122 46777788777655 2
Q ss_pred EEE----------------------cCCCCHHHHHHhhcc--cceEE--EEeeecCCCCcccch----hhHHHHHHHHHH
Q 029661 79 VVL----------------------NPATSLSAIECVLDV--VDLVL--IMSVNPGFGGQSFIE----SQVKKISDLRRM 128 (190)
Q Consensus 79 ~~i----------------------~p~t~~~~~~~~~~~--~d~i~--~m~v~pG~~gq~~~~----~~~~ki~~~~~~ 128 (190)
-.- ..-|..+...++.+. +|.+. +-++| |.......| --+++++++++.
T Consensus 145 ~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~H-G~Yk~~~~p~~~~L~~drl~eI~~~ 223 (347)
T PRK13399 145 CLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSH-GAYKFTRKPDGDILAIDRIEEIHAR 223 (347)
T ss_pred eccCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhcccc-CCcCCCCCCChhhccHHHHHHHHhh
Confidence 110 013556777777753 77653 33444 222111012 236778877776
Q ss_pred HhhcCCCCeEEEeCCCC-----------------------cccHHHHHHcCCCEEEEcccccC
Q 029661 129 CLEKGVNPWIEVDGGVG-----------------------PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 129 ~~~~~~~~~i~vdGGI~-----------------------~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
++ ++++..=||-. .|.++++++.|..-|=++|.+..
T Consensus 224 v~----~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 224 LP----NTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred cC----CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence 52 36788877775 48899999999999999998754
No 450
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=92.66 E-value=2 Score=39.01 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEc-----CCCCHHHHHHhhc---
Q 029661 38 QRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN-----PATSLSAIECVLD--- 95 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~-----p~t~~~~~~~~~~--- 95 (190)
.-++.+.++|++.|++-.-+. ..+.+.+.++.+|++|.++-+... ..++.+.+.++..
T Consensus 89 ~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~ 168 (524)
T PRK12344 89 PNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAA 168 (524)
T ss_pred HHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHH
Confidence 346778899999988853210 022355788899999998765322 2355665555432
Q ss_pred --ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccHHHHHHcCCCEE
Q 029661 96 --VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 160 (190)
Q Consensus 96 --~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~~~~~~aGad~~ 160 (190)
.+|.|.+ |.+.|...+..+.+.++.+++.. +.+|.+ |-|...-|.-..+++|||.+
T Consensus 169 ~~Gad~i~l----~DTvG~~~P~~v~~li~~l~~~~-----~v~i~~H~HND~GlA~ANslaAi~aGa~~V 230 (524)
T PRK12344 169 EAGADWVVL----CDTNGGTLPHEVAEIVAEVRAAP-----GVPLGIHAHNDSGCAVANSLAAVEAGARQV 230 (524)
T ss_pred hCCCCeEEE----ccCCCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 2676653 55556656666677777777654 245554 55666567777889999965
No 451
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=92.64 E-value=2.4 Score=33.94 Aligned_cols=120 Identities=17% Similarity=0.079 Sum_probs=62.5
Q ss_pred cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcC-------CCCH----HHHHHhhc-ccceEE
Q 029661 34 VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP-------ATSL----SAIECVLD-VVDLVL 101 (190)
Q Consensus 34 ~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p-------~t~~----~~~~~~~~-~~d~i~ 101 (190)
.||.+.++.+.+.|++.++++.-. +..+.+.. ..+....+-++. ..+. ..+++.+. .+|.+.
T Consensus 21 ~d~~~~~~~~~~~g~~av~v~~~~-----~~~~~~~~-~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~ 94 (235)
T cd00958 21 EDPEETVKLAAEGGADAVALTKGI-----ARAYGREY-AGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADAVG 94 (235)
T ss_pred cCHHHHHHHHHhcCCCEEEeChHH-----HHhccccc-CCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCCEEE
Confidence 578889999999999999998542 11111111 112121111211 1111 12333333 366654
Q ss_pred EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEE--eCC-----CCcccHHH----HHHcCCCEEEEc
Q 029661 102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV--DGG-----VGPKNAYK----VIEAGANALVAG 163 (190)
Q Consensus 102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~v--dGG-----I~~e~~~~----~~~aGad~~VvG 163 (190)
++-. .|.. ...+.++.++++++...+.+..+-+.+ +|- .+.+++.. +.++|||++-..
T Consensus 95 ~~~~-~~~~---~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~ 163 (235)
T cd00958 95 VTVY-VGSE---EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred EEEe-cCCc---hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec
Confidence 4333 2311 134567778888887766554443332 111 23445444 778899988774
No 452
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=92.57 E-value=1.8 Score=34.63 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHc------CCCEEEEc-ccCCC-cchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhcccceEEE
Q 029661 35 EPEQRVPDFIKA------GADIVSVH-CEQSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 102 (190)
Q Consensus 35 dp~~~i~~~~~~------Gad~v~vh-~e~~~-~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~~~d~i~~ 102 (190)
.|++.++.+.+. +..+||+- .|..- .+-+.++++.+|+.|+.+.+..|-..+.+.++++++.+|.+++
T Consensus 20 t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~ 95 (213)
T PRK10076 20 TLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLF 95 (213)
T ss_pred CHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEE
Confidence 466666555433 55789885 34210 1225688999999999999999988898888999888998764
No 453
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=92.56 E-value=3.4 Score=33.70 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=72.3
Q ss_pred CcEEEEEeecChHHH---HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh---CCcEEEEEcCCCCHHHHHHhhcccc
Q 029661 25 LPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVD 98 (190)
Q Consensus 25 ~~i~~hlmv~dp~~~---i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~---g~~~g~~i~p~t~~~~~~~~~~~~d 98 (190)
+|+-+-+-..+|+.. ++.+.+.|...+=+..-. ..+.-.+.++.+|+. +.++.+..|...+.+...+++...+
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~-~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~ 153 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR-DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALE 153 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC-CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHH
Confidence 455443333466654 445677899988887532 122234567777774 4566667776666655555443321
Q ss_pred eEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-CCEEEEc
Q 029661 99 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 163 (190)
Q Consensus 99 ~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-ad~~VvG 163 (190)
-.-+.-++ |++.+..++.++++++.. +++|+.|+.+. ++.+..+++.+ +|++.+-
T Consensus 154 ~~~i~~iE-----eP~~~~d~~~~~~l~~~~-----~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 154 DLGLDYVE-----QPLPADDLEGRAALARAT-----DTPIMADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred hcCCCEEE-----CCCCcccHHHHHHHHhhC-----CCCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 10000112 233333455556666543 47899999886 57777776654 7887764
No 454
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=92.56 E-value=1.4 Score=38.82 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=36.5
Q ss_pred EEeCCCCcccHHHH-HHcC-CCEEEE-cccccCC-CCHHHHHHHHHHhhc
Q 029661 139 EVDGGVGPKNAYKV-IEAG-ANALVA-GSAVFGA-KDYAEAIKGIKTSKR 184 (190)
Q Consensus 139 ~vdGGI~~e~~~~~-~~aG-ad~~Vv-GsaI~~~-~dp~~~~~~l~~~~~ 184 (190)
...||+++.+++.+ ...| .|++.. |..|+.. +.+.+-++.+|+.++
T Consensus 335 v~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~A~rqA~e 384 (406)
T cd08207 335 VFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVRSLRQAWE 384 (406)
T ss_pred eccCCCCHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHHHHHHHHH
Confidence 48999999999866 5667 588776 8999987 678888888887654
No 455
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=92.55 E-value=1.7 Score=32.57 Aligned_cols=104 Identities=22% Similarity=0.309 Sum_probs=56.5
Q ss_pred HHHHHHHhCCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEEeCC
Q 029661 66 TLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGG 143 (190)
Q Consensus 66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~vdGG 143 (190)
+-+..++.|+++...=...||.|.+...+ +.+|.|.+-+.. | +.....|. +++.+.+.+. +..+.+.|=
T Consensus 32 ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~-g-~h~~l~~~-------lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 32 IARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLD-G-GHLTLVPG-------LVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEecc-c-hHHHHHHH-------HHHHHHHhCCcceEEeecCc
Confidence 44556667777654433345555555443 347777654333 2 12222233 3333334443 333445555
Q ss_pred CCcccHHHHHHcCCCEEEEcccccCC-CCHHHHHHHHHHhhc
Q 029661 144 VGPKNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGIKTSKR 184 (190)
Q Consensus 144 I~~e~~~~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~~~~~ 184 (190)
|.+++...+.+.|+|-+ |.. .+..+.++.++..+.
T Consensus 103 ip~~d~~~l~~~G~~~i------f~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 103 IPPGDYQELKEMGVDRI------FGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred cCchhHHHHHHhCccee------eCCCCCHHHHHHHHHHHHH
Confidence 55899999999998854 443 355667777665443
No 456
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.53 E-value=0.64 Score=35.85 Aligned_cols=85 Identities=20% Similarity=0.330 Sum_probs=60.6
Q ss_pred HHHHHHhccC-CCCc-EEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHH
Q 029661 13 PLVVDALRPV-TDLP-LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 90 (190)
Q Consensus 13 ~~~v~~i~~~-~~~~-i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~ 90 (190)
.+.++++|+. +..+ +.+ -+.+.+ -.+.+.++|+|.|-+=-. +.+++.++++.+++.+.++.+..+-.-..+.+
T Consensus 67 ~~av~~~~~~~~~~~~I~V--Ev~~~e-e~~ea~~~g~d~I~lD~~--~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni 141 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEV--EVENLE-EAEEALEAGADIIMLDNM--SPEDLKEAVEELRELNPRVKIEASGGITLENI 141 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEE--EESSHH-HHHHHHHTT-SEEEEES---CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTH
T ss_pred HHHHHHHHHhCCCCceEEE--EcCCHH-HHHHHHHhCCCEEEecCc--CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHH
Confidence 4567777775 4443 444 556644 456788899999988654 35778899999989998999998888777778
Q ss_pred HHhhcc-cceEEE
Q 029661 91 ECVLDV-VDLVLI 102 (190)
Q Consensus 91 ~~~~~~-~d~i~~ 102 (190)
.+|... +|++.+
T Consensus 142 ~~ya~~gvD~isv 154 (169)
T PF01729_consen 142 AEYAKTGVDVISV 154 (169)
T ss_dssp HHHHHTT-SEEEE
T ss_pred HHHHhcCCCEEEc
Confidence 888764 798865
No 457
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=92.53 E-value=4.4 Score=34.74 Aligned_cols=152 Identities=11% Similarity=0.122 Sum_probs=95.5
Q ss_pred HHHHhccCCCCcEEEEEeecC--hHHHHHHHHHcC-----------CCEEEEcccCCCc-ch---HHHHHHHHHHhCCcE
Q 029661 15 VVDALRPVTDLPLDVHLMIVE--PEQRVPDFIKAG-----------ADIVSVHCEQSST-IH---LHRTLNQIKDLGAKA 77 (190)
Q Consensus 15 ~v~~i~~~~~~~i~~hlmv~d--p~~~i~~~~~~G-----------ad~v~vh~e~~~~-~~---~~~~i~~i~~~g~~~ 77 (190)
.++...+..++|+.+||==.. ...++..+.++| .+.|-+=....+. ++ -.++++.++..|+.+
T Consensus 76 ~~~~~A~~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~V 155 (340)
T cd00453 76 HVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTL 155 (340)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 444444556899999986554 457899999999 8888775433221 22 346677777777654
Q ss_pred ----EEE--------Ec------CCCCHHHHHHhhcc------cceEE--EEeeecCCC-CcccchhhHHHHHHHHHHHh
Q 029661 78 ----GVV--------LN------PATSLSAIECVLDV------VDLVL--IMSVNPGFG-GQSFIESQVKKISDLRRMCL 130 (190)
Q Consensus 78 ----g~~--------i~------p~t~~~~~~~~~~~------~d~i~--~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~ 130 (190)
|-. .. .-|..+...++.+. +|.+. +-++|--+. |. ..-.+++++++++..+
T Consensus 156 EaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~--p~L~~~~L~~i~~~~~ 233 (340)
T cd00453 156 EIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGN--VVLTPTILRDSQEYVS 233 (340)
T ss_pred EEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCC--CccCHHHHHHHHHHHH
Confidence 222 00 13456777777653 55543 233441111 11 2234777788888774
Q ss_pred h-cCC---CCeEEEeCCCC--cccHHHHHHcCCCEEEEcccccC
Q 029661 131 E-KGV---NPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 131 ~-~~~---~~~i~vdGGI~--~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
+ +|. ++++..=||-. .+.++.+++.|+.-+=+++.+..
T Consensus 234 ~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Te~~~ 277 (340)
T cd00453 234 KKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQW 277 (340)
T ss_pred hhcccCCCCCceEEeCCCCCCHHHHHHHHHcCCeEEEcccHHHH
Confidence 2 222 57788888766 58999999999999999987643
No 458
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=92.50 E-value=0.15 Score=41.81 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=34.1
Q ss_pred eCCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHhhcccc
Q 029661 141 DGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 187 (190)
Q Consensus 141 dGGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~~~~~~ 187 (190)
..||++++..++.++|+|++-.|--+|...|..+.+++-.+.++|+-
T Consensus 41 G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~i~~~~~ilRPaN 87 (253)
T PF13277_consen 41 GFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDFIDKEPRILRPAN 87 (253)
T ss_dssp TSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHHHHH-SSEE--TT
T ss_pred CCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHHHhcCCCcEECCC
Confidence 56888999999999999999999999999988888888777777653
No 459
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=92.41 E-value=1.1 Score=38.17 Aligned_cols=96 Identities=19% Similarity=0.152 Sum_probs=60.5
Q ss_pred CcCCCCHHHHHHhccCCCCcEEEEEeec--C------hHHHHHHHHHcCCCEEEEcccCC---Ccc-h--------HHHH
Q 029661 7 PNITIGPLVVDALRPVTDLPLDVHLMIV--E------PEQRVPDFIKAGADIVSVHCEQS---STI-H--------LHRT 66 (190)
Q Consensus 7 pn~~~G~~~v~~i~~~~~~~i~~hlmv~--d------p~~~i~~~~~~Gad~v~vh~e~~---~~~-~--------~~~~ 66 (190)
.+..+-.++++++++..++|+.+.+.+. + ..++++.+.++|+|.+++|.-.. ... . -.+.
T Consensus 116 ~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~ 195 (333)
T PRK11815 116 AEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDR 195 (333)
T ss_pred cCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHH
Confidence 4445556788888887788999976442 2 23567788899999999996421 000 0 1345
Q ss_pred HHHHHHhCCc-EEEEEcCCCCHHHHHHhhcccceEEE
Q 029661 67 LNQIKDLGAK-AGVVLNPATSLSAIECVLDVVDLVLI 102 (190)
Q Consensus 67 i~~i~~~g~~-~g~~i~p~t~~~~~~~~~~~~d~i~~ 102 (190)
+..+++.-.. +.+.-.--++.+.++++++.+|.|++
T Consensus 196 i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgVmI 232 (333)
T PRK11815 196 VYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMI 232 (333)
T ss_pred HHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 6666665322 33333333567778888777887765
No 460
>PRK06267 hypothetical protein; Provisional
Probab=92.40 E-value=6.5 Score=33.74 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHhCCcE--EEEEcCCCCHHHHHHhhc-----ccceEEEE--eeecCCC--Ccc--cchhhHHHHHHHHH
Q 029661 61 IHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLD-----VVDLVLIM--SVNPGFG--GQS--FIESQVKKISDLRR 127 (190)
Q Consensus 61 ~~~~~~i~~i~~~g~~~--g~~i~p~t~~~~~~~~~~-----~~d~i~~m--~v~pG~~--gq~--~~~~~~~ki~~~~~ 127 (190)
++..+.++.+++.|+++ ++.+.+....+.+.+.+. .+|.+.+. .-.||+. +++ -..+.++-+.-.|-
T Consensus 153 ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl 232 (350)
T PRK06267 153 DKIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRL 232 (350)
T ss_pred HHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 34567788899999995 455644444544444332 25665443 4446652 211 11344555666666
Q ss_pred HHhhcCCCCeEEEeCCC--CcccHHHHHHcCCCEE----EEcccccCC-CCHHHHH
Q 029661 128 MCLEKGVNPWIEVDGGV--GPKNAYKVIEAGANAL----VAGSAVFGA-KDYAEAI 176 (190)
Q Consensus 128 ~~~~~~~~~~i~vdGGI--~~e~~~~~~~aGad~~----VvGsaI~~~-~dp~~~~ 176 (190)
+.++ ..| +.||- +.........+|||++ ..|-+++.. .++++-.
T Consensus 233 ~lP~----~~I-~~~~~~~~l~~~~~~~~aGaN~i~~~p~~g~ylt~~g~~~~~~~ 283 (350)
T PRK06267 233 NFPK----IKI-ITGTWVDKLTNIGPLIMSGSNVITKFPLFSMYGTKEGKRVENEI 283 (350)
T ss_pred HCCC----CCc-chhhHhHhcchhhHHhhcCcceeeccchhccCcccCCCCHHHHH
Confidence 6553 456 55552 2233344567999999 889888865 3444333
No 461
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.37 E-value=0.45 Score=39.67 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=82.9
Q ss_pred HHHHHHhccCCCCcEEEEEeec--Ch---HHHHHHHHHcCCCEEEEcc----------cCC---CcchHHHHHHHHHHhC
Q 029661 13 PLVVDALRPVTDLPLDVHLMIV--EP---EQRVPDFIKAGADIVSVHC----------EQS---STIHLHRTLNQIKDLG 74 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv~--dp---~~~i~~~~~~Gad~v~vh~----------e~~---~~~~~~~~i~~i~~~g 74 (190)
...+++|...+++|+.+|+=+- +| .+.+..+.++|+.++++-- ... +.++..+-|+++++.-
T Consensus 67 ~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~ 146 (289)
T COG2513 67 LADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEAR 146 (289)
T ss_pred HHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhc
Confidence 3456666666899999999872 44 4578889999999998831 110 1123334455555554
Q ss_pred CcEEEEEcCCCC----------HHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661 75 AKAGVVLNPATS----------LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 143 (190)
Q Consensus 75 ~~~g~~i~p~t~----------~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG 143 (190)
...-++|+--|+ +++.+-|.+ .+|.|.. ||.. ..+.++++.+-.+ ...-..+.-.|+
T Consensus 147 ~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~----~al~-------~~e~i~~f~~av~-~pl~~N~t~~g~ 214 (289)
T COG2513 147 RDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFP----EALT-------DLEEIRAFAEAVP-VPLPANITEFGK 214 (289)
T ss_pred cCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEcc----ccCC-------CHHHHHHHHHhcC-CCeeeEeeccCC
Confidence 445555554444 234444443 2566642 3321 1333333333321 001122333344
Q ss_pred CCcccHHHHHHcCCCEEEEcccccCC
Q 029661 144 VGPKNAYKVIEAGANALVAGSAVFGA 169 (190)
Q Consensus 144 I~~e~~~~~~~aGad~~VvGsaI~~~ 169 (190)
--.-++.++.++|...++-|...|++
T Consensus 215 tp~~~~~~L~~~Gv~~V~~~~~~~ra 240 (289)
T COG2513 215 TPLLTVAELAELGVKRVSYGLTAFRA 240 (289)
T ss_pred CCCcCHHHHHhcCceEEEECcHHHHH
Confidence 33568899999999999999887764
No 462
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.36 E-value=1.7 Score=36.40 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=62.6
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 92 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~ 92 (190)
+.+++.|+. +..++.+ -+.+.+ -...+.++|+|+|-+=-. +.+++.+.++.+++.+-++-+..+-+-..+.+.+
T Consensus 188 ~ai~~~r~~~~~~kIeV--Ev~tl~-ea~eal~~gaDiI~LDnm--~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~ 262 (289)
T PRK07896 188 AALRAVRAAAPDLPCEV--EVDSLE-QLDEVLAEGAELVLLDNF--PVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAA 262 (289)
T ss_pred HHHHHHHHhCCCCCEEE--EcCCHH-HHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHH
Confidence 567777764 5566666 556655 445567999999998655 3667888888877777778888888888888899
Q ss_pred hhcc-cceEEE
Q 029661 93 VLDV-VDLVLI 102 (190)
Q Consensus 93 ~~~~-~d~i~~ 102 (190)
|.+. +|+|.+
T Consensus 263 yA~tGvD~Is~ 273 (289)
T PRK07896 263 YAETGVDYLAV 273 (289)
T ss_pred HHhcCCCEEEe
Confidence 8876 999865
No 463
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=92.30 E-value=3.1 Score=32.67 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=55.6
Q ss_pred HHHHHHHhCCcEEEEEcCCCCHHHHHHhhc--ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC--CCeEEEe
Q 029661 66 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV--NPWIEVD 141 (190)
Q Consensus 66 ~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~--~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~--~~~i~vd 141 (190)
+...++.+|.++ +.+.+++|.+.+.+.+. .+|+|.+-+..+. . .+...+-++.+|+. +. +++|.+.
T Consensus 102 v~~~l~~~G~~v-i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~-~----~~~~~~~i~~lr~~----~~~~~~~i~vG 171 (201)
T cd02070 102 VATMLEANGFEV-IDLGRDVPPEEFVEAVKEHKPDILGLSALMTT-T----MGGMKEVIEALKEA----GLRDKVKVMVG 171 (201)
T ss_pred HHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccc-c----HHHHHHHHHHHHHC----CCCcCCeEEEE
Confidence 445677889988 66778889877776554 3777765322211 1 23333334444443 33 6788888
Q ss_pred CCCCcccHHHHHHcCCCEEEEcccccCCCCHHHHHHHH
Q 029661 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179 (190)
Q Consensus 142 GGI~~e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l 179 (190)
|..=.+. .....|||... +|..++++..
T Consensus 172 G~~~~~~--~~~~~GaD~~~--------~da~~av~~~ 199 (201)
T cd02070 172 GAPVNQE--FADEIGADGYA--------EDAAEAVAIA 199 (201)
T ss_pred CCcCCHH--HHHHcCCcEEE--------CCHHHHHHHH
Confidence 8543332 44566999874 5666665543
No 464
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.29 E-value=3.7 Score=35.42 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=82.1
Q ss_pred CCHHHHHHhc---cCCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 11 IGPLVVDALR---PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 11 ~G~~~v~~i~---~~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
+|.+-++.|+ +.+++++....|-.+ .++.+.+. +|++-+.... ..+ ..+++++-+.|+.+.+.-...-.+
T Consensus 149 ~g~~gl~~L~~~~~e~Gl~~~tev~d~~---~v~~~~~~-~d~lqIga~~--~~n-~~LL~~va~t~kPVllk~G~~~t~ 221 (352)
T PRK13396 149 HGESALELLAAAREATGLGIITEVMDAA---DLEKIAEV-ADVIQVGARN--MQN-FSLLKKVGAQDKPVLLKRGMAATI 221 (352)
T ss_pred chHHHHHHHHHHHHHcCCcEEEeeCCHH---HHHHHHhh-CCeEEECccc--ccC-HHHHHHHHccCCeEEEeCCCCCCH
Confidence 4555555554 458888888666544 45556666 8999998774 333 568888888888877776666333
Q ss_pred HHHHH---hh-c-ccceEEEEeeecCC---C-CcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC----CC---cccHHH
Q 029661 88 SAIEC---VL-D-VVDLVLIMSVNPGF---G-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG----VG---PKNAYK 151 (190)
Q Consensus 88 ~~~~~---~~-~-~~d~i~~m~v~pG~---~-gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG----I~---~e~~~~ 151 (190)
+.+.. ++ . .-+.|.++ +-|+ . +..-..--+.-|..+|+.. +++|.+|.. -+ +.....
T Consensus 222 ee~~~A~e~i~~~Gn~~viL~--erG~rtf~s~y~~~~~dl~ai~~lk~~~-----~lPVi~DpsH~~G~sd~~~~~a~A 294 (352)
T PRK13396 222 DEWLMAAEYILAAGNPNVILC--ERGIRTFDRQYTRNTLDLSVIPVLRSLT-----HLPIMIDPSHGTGKSEYVPSMAMA 294 (352)
T ss_pred HHHHHHHHHHHHcCCCeEEEE--ecCCccCcCCCCCCCcCHHHHHHHHHhh-----CCCEEECCcccCCcHHHHHHHHHH
Confidence 32222 22 1 12333332 4443 1 1111122255555665543 467877753 33 234445
Q ss_pred HHHcCCCEEEEccccc
Q 029661 152 VIEAGANALVAGSAVF 167 (190)
Q Consensus 152 ~~~aGad~~VvGsaI~ 167 (190)
.+.+|||++++=.=..
T Consensus 295 Ava~GAdGliIE~H~~ 310 (352)
T PRK13396 295 AIAAGTDSLMIEVHPN 310 (352)
T ss_pred HHhhCCCeEEEEecCC
Confidence 6789999988876444
No 465
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=92.27 E-value=1.9 Score=37.00 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=67.6
Q ss_pred cChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE--EcCCCCH-----------HHHHHhhcc-cce
Q 029661 34 VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSL-----------SAIECVLDV-VDL 99 (190)
Q Consensus 34 ~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~--i~p~t~~-----------~~~~~~~~~-~d~ 99 (190)
.||...++.+.+.|+|.+..|.-. +..+ .+.+..++++. +|..|++ ..+++-+.. +|-
T Consensus 91 ~dp~~~i~~a~~~g~dAv~~~~G~-----l~~~---~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdA 162 (348)
T PRK09250 91 FDPENIVKLAIEAGCNAVASTLGV-----LEAV---ARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVA 162 (348)
T ss_pred cCHHHHHHHHHhcCCCEEEeCHHH-----HHhc---cccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCE
Confidence 477888999999999999999531 2211 33443344443 4443333 112333332 566
Q ss_pred EEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeE--EE-eCCCCccc------------HHHHHHcCCCEEEE
Q 029661 100 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI--EV-DGGVGPKN------------AYKVIEAGANALVA 162 (190)
Q Consensus 100 i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i--~v-dGGI~~e~------------~~~~~~aGad~~Vv 162 (190)
|.+ +++||.. ....+++.+.++.....+.|..+-+ .. .+.++.+. .+...+.|||++=+
T Consensus 163 V~~-tvy~Gs~---~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv 236 (348)
T PRK09250 163 VGA-TIYFGSE---ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQ 236 (348)
T ss_pred EEE-EEecCCH---HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEe
Confidence 654 6778832 3456788888888877776643322 12 33344322 34567889998754
No 466
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.25 E-value=3.1 Score=33.79 Aligned_cols=144 Identities=20% Similarity=0.275 Sum_probs=77.9
Q ss_pred EEEEEeecChH-----HHHHHHHHcCCCEEEEc------ccCCC-cc--------------hHHHHHHHHHHh-CCcEEE
Q 029661 27 LDVHLMIVEPE-----QRVPDFIKAGADIVSVH------CEQSS-TI--------------HLHRTLNQIKDL-GAKAGV 79 (190)
Q Consensus 27 i~~hlmv~dp~-----~~i~~~~~~Gad~v~vh------~e~~~-~~--------------~~~~~i~~i~~~-g~~~g~ 79 (190)
+..+++.-+|. ++++.+.++|||++.+- .-.++ .+ ...+.++.+|+. .+.+.+
T Consensus 2 li~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~l 81 (242)
T cd04724 2 LIPYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVL 81 (242)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEE
Confidence 45678887773 45667888999999996 22111 01 223455566653 344444
Q ss_pred EE--cCCCC--HHH-HHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHH
Q 029661 80 VL--NPATS--LSA-IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI 153 (190)
Q Consensus 80 ~i--~p~t~--~~~-~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~ 153 (190)
.. ||-.. ++. ++.+.+ .+|.+++ |.- ..+.+.++.+.+.+++.+.-+.+...-+.+.++.+.
T Consensus 82 m~y~n~~~~~G~~~fi~~~~~aG~~giii----pDl--------~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~ 149 (242)
T cd04724 82 MGYYNPILQYGLERFLRDAKEAGVDGLII----PDL--------PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIA 149 (242)
T ss_pred EEecCHHHHhCHHHHHHHHHHCCCcEEEE----CCC--------CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 32 32111 122 333322 2565544 211 124556666667676666656677777778888887
Q ss_pred HcCCCE-EEEc-ccccCC-----CCHHHHHHHHHHh
Q 029661 154 EAGANA-LVAG-SAVFGA-----KDYAEAIKGIKTS 182 (190)
Q Consensus 154 ~aGad~-~VvG-saI~~~-----~dp~~~~~~l~~~ 182 (190)
+...+. .+++ ...|.. ++..+.++++|+.
T Consensus 150 ~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 150 ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred hhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 744443 3334 345532 3345666777764
No 467
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=92.20 E-value=5.5 Score=32.45 Aligned_cols=119 Identities=19% Similarity=0.317 Sum_probs=73.9
Q ss_pred HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEE-EEcCC--------------------C---CHHHHHHhh
Q 029661 39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPA--------------------T---SLSAIECVL 94 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~-~i~p~--------------------t---~~~~~~~~~ 94 (190)
-++.+..+|||=|++---+ ..+++-+-+.+++.|..+.+ +|... | .++|.++.-
T Consensus 88 D~~~ll~aGADKVSINsaA--v~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e 165 (256)
T COG0107 88 DARKLLRAGADKVSINSAA--VKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVE 165 (256)
T ss_pred HHHHHHHcCCCeeeeChhH--hcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHH
Confidence 4567888999999998664 56677666777778877654 33211 1 235555554
Q ss_pred cc-cceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHHcC-CCEEEEcccccC
Q 029661 95 DV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFG 168 (190)
Q Consensus 95 ~~-~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~aG-ad~~VvGsaI~~ 168 (190)
+. +--|++=+++-....+-| -++.++.+++.. ++|+-+.||.. ++++.++...| ||..... +||.
T Consensus 166 ~~GAGEIlLtsmD~DGtk~Gy---Dl~l~~~v~~~v-----~iPvIASGGaG~~ehf~eaf~~~~adAaLAA-siFH 233 (256)
T COG0107 166 ELGAGEILLTSMDRDGTKAGY---DLELTRAVREAV-----NIPVIASGGAGKPEHFVEAFTEGKADAALAA-SIFH 233 (256)
T ss_pred HcCCceEEEeeecccccccCc---CHHHHHHHHHhC-----CCCEEecCCCCcHHHHHHHHHhcCccHHHhh-hhhh
Confidence 33 555665455421111223 344455555543 47888888888 79999888777 8876544 4554
No 468
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.09 E-value=2.5 Score=36.57 Aligned_cols=60 Identities=23% Similarity=0.239 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEc----ccccCCCCHHHHHHHHHHh
Q 029661 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG----SAVFGAKDYAEAIKGIKTS 182 (190)
Q Consensus 118 ~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvG----saI~~~~dp~~~~~~l~~~ 182 (190)
+++.|+++|+..+ .++.+-|=++.+++..+.++|+|+++++ +.+-....+-+++.++++.
T Consensus 224 ~w~~i~~ir~~~~-----~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~ 287 (361)
T cd04736 224 NWQDLRWLRDLWP-----HKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAA 287 (361)
T ss_pred CHHHHHHHHHhCC-----CCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHH
Confidence 4678888888753 4677777677999999999999999864 3333333445555555543
No 469
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=92.08 E-value=3.6 Score=35.61 Aligned_cols=142 Identities=11% Similarity=0.087 Sum_probs=81.1
Q ss_pred CCCHHHHHHhccC---CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC
Q 029661 10 TIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 86 (190)
Q Consensus 10 ~~G~~~v~~i~~~---~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~ 86 (190)
++|.+..+.|+++ .++++....+-.. .++.+.+. +|++-+.... ..+ ..+++++-+.|+.+.+.-.....
T Consensus 165 g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~---~~~~l~~~-vd~lkI~s~~--~~n-~~LL~~~a~~gkPVilk~G~~~t 237 (360)
T PRK12595 165 GLGVEGLKILKQVADEYGLAVISEIVNPA---DVEVALDY-VDVIQIGARN--MQN-FELLKAAGRVNKPVLLKRGLSAT 237 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCCHH---HHHHHHHh-CCeEEECccc--ccC-HHHHHHHHccCCcEEEeCCCCCC
Confidence 3466666666553 6777777444332 45666777 8999988764 333 46888888899888887776433
Q ss_pred HHHHHH---hhcc--c-ceEEEE-eee--cCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc-------cHH
Q 029661 87 LSAIEC---VLDV--V-DLVLIM-SVN--PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------NAY 150 (190)
Q Consensus 87 ~~~~~~---~~~~--~-d~i~~m-~v~--pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e-------~~~ 150 (190)
++.+.. ++.. - +++++- ++. |.++ ...--+.-|..+|+.. ++++.+|-.=+.. ...
T Consensus 238 ~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~---~~~ldl~~i~~lk~~~-----~~PV~~d~~Hs~G~r~~~~~~a~ 309 (360)
T PRK12595 238 IEEFIYAAEYIMSQGNGQIILCERGIRTYEKAT---RNTLDISAVPILKQET-----HLPVMVDVTHSTGRRDLLLPTAK 309 (360)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCccCCCCCCC---CCCcCHHHHHHHHHHh-----CCCEEEeCCCCCcchhhHHHHHH
Confidence 333222 2221 2 344432 332 2111 1111355555666543 4678886332221 334
Q ss_pred HHHHcCCCEEEEcccc
Q 029661 151 KVIEAGANALVAGSAV 166 (190)
Q Consensus 151 ~~~~aGad~~VvGsaI 166 (190)
..+..|||++++-.=.
T Consensus 310 aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 310 AALAIGADGVMAEVHP 325 (360)
T ss_pred HHHHcCCCeEEEEecC
Confidence 4688999998887655
No 470
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=92.06 E-value=4.8 Score=32.38 Aligned_cols=124 Identities=7% Similarity=0.072 Sum_probs=71.9
Q ss_pred cEEEEEeecChHH---HHHHHHHcCCCEEEEcccCCC---c-chHHHHHHHHHHhCCcEEE--EEcCCCCHHHHHHhhc-
Q 029661 26 PLDVHLMIVEPEQ---RVPDFIKAGADIVSVHCEQSS---T-IHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD- 95 (190)
Q Consensus 26 ~i~~hlmv~dp~~---~i~~~~~~Gad~v~vh~e~~~---~-~~~~~~i~~i~~~g~~~g~--~i~p~t~~~~~~~~~~- 95 (190)
.+..-+|..|+.. .++.+.+.|+|++|+=...+. . ..-.+.++++|+++.+.-+ =+.+++|...++.+.+
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~ 87 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKA 87 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHc
Confidence 4566677888754 566788889999998544321 1 1123688999988633333 3557788877777665
Q ss_pred ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcC-CCEE
Q 029661 96 VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANAL 160 (190)
Q Consensus 96 ~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aG-ad~~ 160 (190)
.+|++.+ |.-... .....+ ++.+|+ .|....+++-..-..+.+..+.+.+ .|.+
T Consensus 88 Gad~itv---H~ea~~-~~~~~~---l~~ik~----~G~~~gval~p~t~~e~l~~~l~~~~vD~V 142 (228)
T PTZ00170 88 GASQFTF---HIEATE-DDPKAV---ARKIRE----AGMKVGVAIKPKTPVEVLFPLIDTDLVDMV 142 (228)
T ss_pred CCCEEEE---eccCCc-hHHHHH---HHHHHH----CCCeEEEEECCCCCHHHHHHHHccchhhhH
Confidence 3888865 422111 101122 233333 3444556666666667777765333 6655
No 471
>PRK02227 hypothetical protein; Provisional
Probab=92.04 E-value=5.7 Score=32.35 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=99.4
Q ss_pred CHHHHHHhccCC--CCcEEEEEeec----ChHHH---HHHHHHcCCCEEEEcccCCCcchHHHH-------HHHHHHh--
Q 029661 12 GPLVVDALRPVT--DLPLDVHLMIV----EPEQR---VPDFIKAGADIVSVHCEQSSTIHLHRT-------LNQIKDL-- 73 (190)
Q Consensus 12 G~~~v~~i~~~~--~~~i~~hlmv~----dp~~~---i~~~~~~Gad~v~vh~e~~~~~~~~~~-------i~~i~~~-- 73 (190)
.|.+|++|+... .+|+-+ -+- +|... +.....+|+|+|=+.... ..+..+. ++..+.+
T Consensus 38 ~p~vir~Iv~~~~~~~pvSA--tiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~--~~~~~~~~~~~~~v~~a~~~~~~ 113 (238)
T PRK02227 38 FPWVIREIVAAVPGRKPVSA--TIGDVPYKPGTISLAALGAAATGADYVKVGLYG--GKTAEEAVEVMKAVVRAVKDLDP 113 (238)
T ss_pred CHHHHHHHHHHhCCCCCcee--eccCCCCCchHHHHHHHHHHhhCCCEEEEcCCC--CCcHHHHHHHHHHHHHhhhhcCC
Confidence 467888888752 267776 333 34433 334577899999997542 2223333 3333332
Q ss_pred CCcEEEEEc-CCC-----CHHHHHHhhc--ccceEEEEeeecCCCCc-ccchhhHHHHHHHHHHHhhcCCCCeEEEeCCC
Q 029661 74 GAKAGVVLN-PAT-----SLSAIECVLD--VVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 144 (190)
Q Consensus 74 g~~~g~~i~-p~t-----~~~~~~~~~~--~~d~i~~m~v~pG~~gq-~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI 144 (190)
+.++.-+.- -.. +...+-+++. ..|.+++=| -+.+|. .|.....+.+++..+...++| ...+..|.+
T Consensus 114 ~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDT--a~Kdg~~Lfd~l~~~~L~~Fv~~ar~~G--l~~gLAGSL 189 (238)
T PRK02227 114 GKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDT--AIKDGKSLFDHMDEEELAEFVAEARSHG--LMSALAGSL 189 (238)
T ss_pred CCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEec--ccCCCcchHhhCCHHHHHHHHHHHHHcc--cHhHhcccC
Confidence 444443332 222 3334455553 356665522 244444 455555777777777766654 456789999
Q ss_pred CcccHHHHHHcCCCEEEEcccccCCC------CHHHHHHHHHHhhc
Q 029661 145 GPKNAYKVIEAGANALVAGSAVFGAK------DYAEAIKGIKTSKR 184 (190)
Q Consensus 145 ~~e~~~~~~~aGad~~VvGsaI~~~~------dp~~~~~~l~~~~~ 184 (190)
+.++++.+...++|++=+=+++.... || +.+.+|++.+.
T Consensus 190 ~~~dip~L~~l~pD~lGfRgavC~g~dR~~~id~-~~V~~~~~~l~ 234 (238)
T PRK02227 190 KFEDIPALKRLGPDILGVRGAVCGGGDRTGRIDP-ELVAELREALR 234 (238)
T ss_pred chhhHHHHHhcCCCEEEechhccCCCCcccccCH-HHHHHHHHHhh
Confidence 99999999999999997778888544 33 45566666554
No 472
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.01 E-value=1.8 Score=37.29 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhC-Cc-EEEEEcCCCC----HHHHHHhhc--ccceEEEEeeecCCC-Ccccc----hhhHHHHHHHHHHH
Q 029661 63 LHRTLNQIKDLG-AK-AGVVLNPATS----LSAIECVLD--VVDLVLIMSVNPGFG-GQSFI----ESQVKKISDLRRMC 129 (190)
Q Consensus 63 ~~~~i~~i~~~g-~~-~g~~i~p~t~----~~~~~~~~~--~~d~i~~m~v~pG~~-gq~~~----~~~~~ki~~~~~~~ 129 (190)
..+.++.+|+.. -. +..-++..++ .+.+.+.++ .+|.+-+ .+.|+.. .|+-. ...++.|+++++..
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l-~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~ 185 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQI-HLNPLQELVQPEGDRDFRGWLDNIAEIVSAL 185 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEE-eCccchhhcCCCCcccHHHHHHHHHHHHHhh
Confidence 556777778764 23 3333433333 455555544 3566654 2233211 11111 22345666666654
Q ss_pred hhcCCCCeEEE---eCCCCcccHHHHHHcCCCEEEEcc
Q 029661 130 LEKGVNPWIEV---DGGVGPKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 130 ~~~~~~~~i~v---dGGI~~e~~~~~~~aGad~~VvGs 164 (190)
+++|.+ .+|.+.+.++.+.++|+|+++++.
T Consensus 186 -----~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 186 -----PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred -----CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 356664 677999999999999999999854
No 473
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=91.98 E-value=5.5 Score=32.03 Aligned_cols=159 Identities=13% Similarity=0.073 Sum_probs=93.4
Q ss_pred HHHHHhccC-C-CCcEEEEEeecChHHHHHH---HHHcCCCEEE-EcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 14 LVVDALRPV-T-DLPLDVHLMIVEPEQRVPD---FIKAGADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 14 ~~v~~i~~~-~-~~~i~~hlmv~dp~~~i~~---~~~~Gad~v~-vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
+.+++|++. . .-++.+...-.|.+..+++ +.+.+-+.+. ++. ...=-+.++.+++.|+++-+...- +..
T Consensus 41 ~~~~~i~~~~~~~~~v~~qv~~~d~e~mi~eA~~l~~~~~nv~IKIP~----T~~Gl~Ai~~L~~~GI~vn~T~vf-s~~ 115 (220)
T PRK12655 41 EVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKRLRNAIPGIVVKIPV----TAEGLAAIKKLKKEGIPTLGTAVY-SAA 115 (220)
T ss_pred HHHHHHHHHhCCCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEeCC----CHHHHHHHHHHHHCCCceeEeEec-CHH
Confidence 455666664 2 2356666666777766554 3444544333 332 122346777778888888664431 222
Q ss_pred HHHHHhhcccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccccc
Q 029661 88 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167 (190)
Q Consensus 88 ~~~~~~~~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsaI~ 167 (190)
+.+......++||. ..-|--. .......+.++++++++..++++..|-+..=-|++++-++..+|+|.+-+.-.++
T Consensus 116 Qa~~Aa~aGa~yIs---pyvgR~~-~~g~dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12655 116 QGLLAALAGAKYVA---PYVNRVD-AQGGDGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLPLDVA 191 (220)
T ss_pred HHHHHHHcCCeEEE---eecchHh-HcCCCHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 33333334567763 1222110 0112346677888888877777787755555558888888899999999997766
Q ss_pred C----CCCHHHHHHHHHH
Q 029661 168 G----AKDYAEAIKGIKT 181 (190)
Q Consensus 168 ~----~~dp~~~~~~l~~ 181 (190)
+ .+-..+.++.+.+
T Consensus 192 ~~l~~~p~t~~~~~~F~~ 209 (220)
T PRK12655 192 QQMLNTPAVESAIEKFEQ 209 (220)
T ss_pred HHHHcCCChHHHHHHHHH
Confidence 4 4555666666643
No 474
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.88 E-value=2.2 Score=35.75 Aligned_cols=123 Identities=12% Similarity=0.029 Sum_probs=72.8
Q ss_pred cChHHH---HHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHh-C-CcEEEEEcCCCCHHHHHHhhcccceEEEEeeecC
Q 029661 34 VEPEQR---VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-G-AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 108 (190)
Q Consensus 34 ~dp~~~---i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~-g-~~~g~~i~p~t~~~~~~~~~~~~d~i~~m~v~pG 108 (190)
.+|+.+ ++.+.+.|.+.+=++.-. ..+...+.++.+|+. | .++.+..|...+.+...+++...+-.-+.-+
T Consensus 133 ~~~~~~~~~~~~~~~~Gf~~iKik~g~-~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i--- 208 (316)
T cd03319 133 DTPEAMAAAAKKAAKRGFPLLKIKLGG-DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELI--- 208 (316)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeCC-ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE---
Confidence 567654 445667899999988642 123345677777764 4 5566667766665555555433211000011
Q ss_pred CCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH-cCCCEEEEccccc
Q 029661 109 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-AGANALVAGSAVF 167 (190)
Q Consensus 109 ~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~-aGad~~VvGsaI~ 167 (190)
.|++.+...+.++++++. .+++|+.|+.+. .+.+..+.+ .++|++..-..-+
T Consensus 209 --EeP~~~~d~~~~~~L~~~-----~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~ 262 (316)
T cd03319 209 --EQPVPAGDDDGLAYLRDK-----SPLPIMADESCFSAADAARLAGGGAYDGINIKLMKT 262 (316)
T ss_pred --ECCCCCCCHHHHHHHHhc-----CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecccc
Confidence 344444455556666553 347898998886 677777766 5688887764444
No 475
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=91.82 E-value=1.4 Score=44.44 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=80.9
Q ss_pred HHHHHHHc--CCCEEEEc--ccCCCcchHHHHHHHHHHh--CCcEEEEEcCCCCHHHHHHhh--cccceEEEEeeecCCC
Q 029661 39 RVPDFIKA--GADIVSVH--CEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVL--DVVDLVLIMSVNPGFG 110 (190)
Q Consensus 39 ~i~~~~~~--Gad~v~vh--~e~~~~~~~~~~i~~i~~~--g~~~g~~i~p~t~~~~~~~~~--~~~d~i~~m~v~pG~~ 110 (190)
++..+... |.+.++-. .+..+.+++...+..+|+. +.++++=+...+-+..+..-+ ..+|+|++=+-+-|++
T Consensus 955 ~IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTG 1034 (1485)
T PRK11750 955 LIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTG 1034 (1485)
T ss_pred HHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcc
Confidence 45555333 67776653 2222356788888888886 457787665544454444322 2589998866665554
Q ss_pred Ccccc--hhh---H-HHHHHHHHHHhhcC--CCCeEEEeCCCC-cccHHHHHHcCCCEEEEccc
Q 029661 111 GQSFI--ESQ---V-KKISDLRRMCLEKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 165 (190)
Q Consensus 111 gq~~~--~~~---~-~ki~~~~~~~~~~~--~~~~i~vdGGI~-~e~~~~~~~aGad~~VvGsa 165 (190)
..+.. ..+ + --+.+.++.+..++ -.+.+.+|||+. ..++..++..|||.+-.|++
T Consensus 1035 Aap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~ 1098 (1485)
T PRK11750 1035 ASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTG 1098 (1485)
T ss_pred cccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchH
Confidence 32211 000 1 12566666665554 347899999999 67888889999999999975
No 476
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=91.81 E-value=3.4 Score=32.49 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEc-CC--CC----HHHHHHhhc-ccceEEEEeee
Q 029661 35 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-PA--TS----LSAIECVLD-VVDLVLIMSVN 106 (190)
Q Consensus 35 dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~-p~--t~----~~~~~~~~~-~~d~i~~m~v~ 106 (190)
++.++++.+.+.|++.+.++... +....+.+++.+.++..+++ |. .+ ....++.+. .+|-|-+ .++
T Consensus 18 ~i~~~~~~a~~~~~~av~v~p~~-----v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdv-v~~ 91 (203)
T cd00959 18 DIRKLCDEAKEYGFAAVCVNPCF-----VPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDM-VIN 91 (203)
T ss_pred HHHHHHHHHHHcCCCEEEEcHHH-----HHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEE-eec
Confidence 45678888999999999999653 33334444445566665554 11 11 122333333 2555533 233
Q ss_pred cCC--CCcccchhhHHHHHHHHHHHhhcCCCCe-EEEeCCCCccc----HHHHHHcCCCEEEEccccc-CCCCHHHHHHH
Q 029661 107 PGF--GGQSFIESQVKKISDLRRMCLEKGVNPW-IEVDGGVGPKN----AYKVIEAGANALVAGSAVF-GAKDYAEAIKG 178 (190)
Q Consensus 107 pG~--~gq~~~~~~~~ki~~~~~~~~~~~~~~~-i~vdGGI~~e~----~~~~~~aGad~~VvGsaI~-~~~dp~~~~~~ 178 (190)
.|. +| ......+.|.++++... +..+. |.-.|..+.+. .+.+.++|||++=.++.-. ....+ +.++.
T Consensus 92 ~g~~~~~--~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~-~~v~~ 166 (203)
T cd00959 92 IGALKSG--DYEAVYEEIAAVVEACG--GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATV-EDVKL 166 (203)
T ss_pred HHHHhCC--CHHHHHHHHHHHHHhcC--CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCH-HHHHH
Confidence 442 22 23456777777777654 22222 33456666554 4456899999998886554 22333 33344
Q ss_pred HHHhh
Q 029661 179 IKTSK 183 (190)
Q Consensus 179 l~~~~ 183 (190)
+++.+
T Consensus 167 ~~~~~ 171 (203)
T cd00959 167 MKEAV 171 (203)
T ss_pred HHHHh
Confidence 44443
No 477
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=91.76 E-value=6.3 Score=32.19 Aligned_cols=125 Identities=19% Similarity=0.113 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEE-EcCCCCHHHHHHhhc-ccceEEEE-eeecCCCCc-
Q 029661 37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVLD-VVDLVLIM-SVNPGFGGQ- 112 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~-i~p~t~~~~~~~~~~-~~d~i~~m-~v~pG~~gq- 112 (190)
..+++.+.++|.+.|=+..-+ ..++..+.++.+++.+...-+. +.. ...+.++...+ .+|.|-+. ++.+-....
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~~~~~~~~~~~~~r-~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~ 100 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIVALGLPARLIVWCR-AVKEDIEAALRCGVTAVHISIPVSDIHLAHK 100 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHhcCCCCEEEEecc-CCHHHHHHHHhCCcCEEEEEEecCHHHHHHH
Confidence 346777888888888773211 0223345677777654333332 221 22344444443 36766442 222111000
Q ss_pred --ccchhhHHHHHHHHHHHhhcCCCCeEE--EeCCCCcc----cHHHHHHcCCCEEEEc
Q 029661 113 --SFIESQVKKISDLRRMCLEKGVNPWIE--VDGGVGPK----NAYKVIEAGANALVAG 163 (190)
Q Consensus 113 --~~~~~~~~ki~~~~~~~~~~~~~~~i~--vdGGI~~e----~~~~~~~aGad~~VvG 163 (190)
.-.++.++++.+.-++..+.|..+.+. -.+..+++ .++.+.++|+|.+.+.
T Consensus 101 ~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 101 LGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred hCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 113456677777777766666543322 22223344 3445667899988765
No 478
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=91.75 E-value=2.6 Score=36.39 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=63.9
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCc---------------chHHHHHHHHHHhCCc-
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST---------------IHLHRTLNQIKDLGAK- 76 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~---------------~~~~~~i~~i~~~g~~- 76 (190)
+.++.|++. +.+.+.+..+ +. +-++.+.++|++.+++-.|+... +..-+.++.+++.|++
T Consensus 141 eii~~Ik~~~p~i~Iei~~l--t~-e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~ 217 (366)
T TIGR02351 141 EAIKLAREYFSSLAIEVQPL--NE-EEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRK 217 (366)
T ss_pred HHHHHHHHhCCccccccccC--CH-HHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 455666653 3333433222 22 24578999999999998776311 1123467788888876
Q ss_pred E--EEEEcCC-CCHHHHHH-----hhcc--------cceEEEEeeecC-CCCcc-cc-hhhHHHHHHHHHHHhhcCCCCe
Q 029661 77 A--GVVLNPA-TSLSAIEC-----VLDV--------VDLVLIMSVNPG-FGGQS-FI-ESQVKKISDLRRMCLEKGVNPW 137 (190)
Q Consensus 77 ~--g~~i~p~-t~~~~~~~-----~~~~--------~d~i~~m~v~pG-~~gq~-~~-~~~~~ki~~~~~~~~~~~~~~~ 137 (190)
+ |+.+... +..+.+.- ++.. +-...+|.. +| +..+. +. .+.++.|..+|-+.+. ..
T Consensus 218 v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~-~g~~~~~~~l~~~~~~~~i~~~R~~~P~----~~ 292 (366)
T TIGR02351 218 IGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPC-TNGLKPKVIVTDRELVQIICAYRLFDPF----VE 292 (366)
T ss_pred eceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccC-CCCCCCCCcCCHHHHHHHHHHHHHhCcc----cc
Confidence 4 4444433 22332220 1111 122234433 23 11111 22 3445666666766654 46
Q ss_pred EEEeCCCC
Q 029661 138 IEVDGGVG 145 (190)
Q Consensus 138 i~vdGGI~ 145 (190)
|-+.||=.
T Consensus 293 i~~s~g~~ 300 (366)
T TIGR02351 293 ISLSTRES 300 (366)
T ss_pred cEEecCCC
Confidence 77888843
No 479
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=91.73 E-value=2.8 Score=36.57 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=67.7
Q ss_pred cChHHHHHHHHHcCCCEEEE---ccc----------------CCC-cchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHh
Q 029661 34 VEPEQRVPDFIKAGADIVSV---HCE----------------QSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV 93 (190)
Q Consensus 34 ~dp~~~i~~~~~~Gad~v~v---h~e----------------~~~-~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~ 93 (190)
-||.++++.++++|+.++++ |-+ +++ .+=+.++.+++|++|+++|+-.++ .++-.+
T Consensus 81 fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW~~p- 156 (384)
T smart00812 81 FDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDWFNP- 156 (384)
T ss_pred CCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HHhCCC-
Confidence 57899999999999999988 211 000 123688999999999999997664 332211
Q ss_pred hcccceEEEE--eeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC--c------ccHHHHHHcCCCE---E
Q 029661 94 LDVVDLVLIM--SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--P------KNAYKVIEAGANA---L 160 (190)
Q Consensus 94 ~~~~d~i~~m--~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~--~------e~~~~~~~aGad~---~ 160 (190)
++-... ...+. .-..+....-+-..++++++.+-+. -.+.-||+.. . +-+..+.+...+. +
T Consensus 157 ----~y~~~~~~~~~~~-~~~~~~~y~~~~~~Ql~ELit~Ygp-d~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~~~vv 230 (384)
T smart00812 157 ----LYAGPTSSDEDPD-NWPRFQEFVDDWLPQLRELVTRYKP-DLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVKDTVV 230 (384)
T ss_pred ----ccccccccccccc-cchhHHHHHHHHHHHHHHHHhcCCC-ceEEEeCCCCCccchhcHHHHHHHHHHhCCCCceEE
Confidence 110000 00000 0111122221113566777765555 5688999863 1 1223456666765 5
Q ss_pred EEcc
Q 029661 161 VAGS 164 (190)
Q Consensus 161 VvGs 164 (190)
|-.+
T Consensus 231 vn~R 234 (384)
T smart00812 231 VNDR 234 (384)
T ss_pred EEcc
Confidence 5444
No 480
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=91.72 E-value=2.6 Score=35.57 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=58.6
Q ss_pred CCCHHHHHHhccCCCCcEEEEEee------cChHHHHHHHHHcCCCEEEEcccCCC----cchHHHHHHHHHHhCCcEEE
Q 029661 10 TIGPLVVDALRPVTDLPLDVHLMI------VEPEQRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKDLGAKAGV 79 (190)
Q Consensus 10 ~~G~~~v~~i~~~~~~~i~~hlmv------~dp~~~i~~~~~~Gad~v~vh~e~~~----~~~~~~~i~~i~~~g~~~g~ 79 (190)
.+-.++++++|+.+++|+.+.+-. .+..++++.+.++|+|.+++|..... .....+.++.+++.=..+.+
T Consensus 117 ~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi 196 (319)
T TIGR00737 117 DLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVI 196 (319)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEE
Confidence 344567888888778899886532 12346777889999999999965310 01124566677664223333
Q ss_pred EEcCCCCHHHHHHhhc--ccceEEE
Q 029661 80 VLNPATSLSAIECVLD--VVDLVLI 102 (190)
Q Consensus 80 ~i~p~t~~~~~~~~~~--~~d~i~~ 102 (190)
+..--++.+.+.++++ .+|.|++
T Consensus 197 ~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 197 GNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred EeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 4444466677777774 3788765
No 481
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=91.70 E-value=2.4 Score=34.05 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCC---H---------HHHHHhhcc-cceEE
Q 029661 35 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS---L---------SAIECVLDV-VDLVL 101 (190)
Q Consensus 35 dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~---~---------~~~~~~~~~-~d~i~ 101 (190)
++.++++++.+.|++.|++++.. +..+.+.....+.++++.++-... . ...++.+.. +|-|-
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~-----~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd 94 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGY-----VKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVD 94 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGG-----HHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEE
T ss_pred hHHHHHHHHHHhCCCEEEECHHH-----HHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHcCCceee
Confidence 56778899999999999999763 444444444445688888874321 1 122233322 44443
Q ss_pred EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCccc-------------HHHHHHcCCCEEEEcccccC
Q 029661 102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-------------AYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 102 ~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~-------------~~~~~~aGad~~VvGsaI~~ 168 (190)
+ .++.|..+........+.++++++...+.+ +++.+-+=.+.+. .+.+.++|||++=..+.=+
T Consensus 95 ~-vi~~~~~~~~~~~~~~~~i~~v~~~~~~~g--l~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~- 170 (236)
T PF01791_consen 95 V-VINYGALGSGNEDEVIEEIAAVVEECHKYG--LKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP- 170 (236)
T ss_dssp E-EEEHHHHHTTHHHHHHHHHHHHHHHHHTSE--EEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-
T ss_pred e-eccccccccccHHHHHHHHHHHHHHHhcCC--cEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-
Confidence 2 234433333234566778888888876544 4444444444332 3456889999998876633
Q ss_pred CCCHHHHHHHHHHhhc
Q 029661 169 AKDYAEAIKGIKTSKR 184 (190)
Q Consensus 169 ~~dp~~~~~~l~~~~~ 184 (190)
...-.+..+.+++..+
T Consensus 171 ~~~t~~~~~~~~~~~~ 186 (236)
T PF01791_consen 171 VGATPEDVELMRKAVE 186 (236)
T ss_dssp SCSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH
Confidence 3333344555555443
No 482
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=91.67 E-value=5.8 Score=31.67 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=79.7
Q ss_pred cCCCCHHHHHHhccC-CCCcEEEEEeecCh-------H--HHHHHHHHcCCCEEEEcccCC-----CcchHHHHHHHHHH
Q 029661 8 NITIGPLVVDALRPV-TDLPLDVHLMIVEP-------E--QRVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKD 72 (190)
Q Consensus 8 n~~~G~~~v~~i~~~-~~~~i~~hlmv~dp-------~--~~i~~~~~~Gad~v~vh~e~~-----~~~~~~~~i~~i~~ 72 (190)
.....|..++..++. .+..+-+.--+.=| . .-++.+.+.|||-+-+....+ ..+...+.+..+++
T Consensus 34 avcv~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~ 113 (211)
T TIGR00126 34 AVCVNPSYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVE 113 (211)
T ss_pred EEEeCHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHH
Confidence 344567777777653 22222222234434 1 125678999999887753321 12233444444444
Q ss_pred h--CCcEEEEEc--CCCCHHHHHHhh-----cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCC
Q 029661 73 L--GAKAGVVLN--PATSLSAIECVL-----DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 143 (190)
Q Consensus 73 ~--g~~~g~~i~--p~t~~~~~~~~~-----~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGG 143 (190)
. |+.+-+.+. .-++ +.+.... ..+|+|-. ..||.+ ...+++.++.+++..+. .++|-+.||
T Consensus 114 ~~~g~~lKvIlE~~~L~~-~ei~~a~~ia~eaGADfvKT---sTGf~~---~gat~~dv~~m~~~v~~---~v~IKaaGG 183 (211)
T TIGR00126 114 ACAGVLLKVIIETGLLTD-EEIRKACEICIDAGADFVKT---STGFGA---GGATVEDVRLMRNTVGD---TIGVKASGG 183 (211)
T ss_pred HcCCCeEEEEEecCCCCH-HHHHHHHHHHHHhCCCEEEe---CCCCCC---CCCCHHHHHHHHHHhcc---CCeEEEeCC
Confidence 2 543333222 2122 2222221 13788742 335542 23566777777777653 478999999
Q ss_pred CC-cccHHHHHHcCCCEE
Q 029661 144 VG-PKNAYKVIEAGANAL 160 (190)
Q Consensus 144 I~-~e~~~~~~~aGad~~ 160 (190)
|+ .+++..++++|++-+
T Consensus 184 irt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 184 VRTAEDAIAMIEAGASRI 201 (211)
T ss_pred CCCHHHHHHHHHHhhHHh
Confidence 99 688999999999865
No 483
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=91.61 E-value=1.5 Score=34.72 Aligned_cols=122 Identities=12% Similarity=0.168 Sum_probs=71.7
Q ss_pred EEeecCh---HHHHHHHHHcCCCEEEEcccCC---C-cchHHHHHHHHHHhCCcEEEE--EcCCCCHHHHHHhhcc-cce
Q 029661 30 HLMIVEP---EQRVPDFIKAGADIVSVHCEQS---S-TIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLDV-VDL 99 (190)
Q Consensus 30 hlmv~dp---~~~i~~~~~~Gad~v~vh~e~~---~-~~~~~~~i~~i~~~g~~~g~~--i~p~t~~~~~~~~~~~-~d~ 99 (190)
-++..|+ ++.++.+.++|+|++++=...+ + ..--.+.++.+|+.- +.-+. +-...|...++++.+. +|+
T Consensus 5 Sil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~-~~~~DvHLMv~~P~~~i~~~~~~g~~~ 83 (201)
T PF00834_consen 5 SILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKIT-DLPLDVHLMVENPERYIEEFAEAGADY 83 (201)
T ss_dssp BGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTS-SSEEEEEEESSSGGGHHHHHHHHT-SE
T ss_pred hhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcC-CCcEEEEeeeccHHHHHHHHHhcCCCE
Confidence 3455565 4567888999999999943322 1 111246788888873 33333 3355677778887765 788
Q ss_pred EEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcccHHHHHHcCCCEEEEccc
Q 029661 100 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 165 (190)
Q Consensus 100 i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e~~~~~~~aGad~~VvGsa 165 (190)
|.+ |+=.. +...+.++.+|+ .|....|++..+-..+.+..+++ -.|.+.+=|-
T Consensus 84 i~~---H~E~~-----~~~~~~i~~ik~----~g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV 136 (201)
T PF00834_consen 84 ITF---HAEAT-----EDPKETIKYIKE----AGIKAGIALNPETPVEELEPYLD-QVDMVLVMSV 136 (201)
T ss_dssp EEE---EGGGT-----TTHHHHHHHHHH----TTSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS
T ss_pred EEE---cccch-----hCHHHHHHHHHH----hCCCEEEEEECCCCchHHHHHhh-hcCEEEEEEe
Confidence 754 43211 122333444443 45567788888887888888877 4898877653
No 484
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.60 E-value=2.7 Score=35.08 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=59.6
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhC--CcEEEEEcCCCCHHHH
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAI 90 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g--~~~g~~i~p~t~~~~~ 90 (190)
+.++.+|+. +.+++.+ -+.+.+ -...+.++|+|.|-+=-. +.+++.+.++.+++.| -++-+..+-+-..+.+
T Consensus 171 ~av~~~r~~~~~~kIeV--Ev~~le-ea~~a~~agaDiI~LDn~--~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni 245 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEV--EVESLE-DALKAAKAGADIIMLDNM--TPEEIREVIEALKREGLRERVKIEVSGGITPENI 245 (278)
T ss_pred HHHHHHHHhCCCCcEEE--EeCCHH-HHHHHHHcCcCEEEECCC--CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHH
Confidence 345666654 4455444 555554 445678999998776544 3667888888888876 4567777777788888
Q ss_pred HHhhcc-cceEEEE
Q 029661 91 ECVLDV-VDLVLIM 103 (190)
Q Consensus 91 ~~~~~~-~d~i~~m 103 (190)
++|+.. +|+|.+-
T Consensus 246 ~~yA~tGvD~Is~g 259 (278)
T PRK08385 246 EEYAKLDVDVISLG 259 (278)
T ss_pred HHHHHcCCCEEEeC
Confidence 998876 8998653
No 485
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=91.58 E-value=1.4 Score=36.90 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=60.4
Q ss_pred HHHHHhccC-CCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHH
Q 029661 14 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 92 (190)
Q Consensus 14 ~~v~~i~~~-~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~ 92 (190)
..++.+|+. +..++.+. +.+.+ -.+.+.++|+|.|-+--. +.+++.+.++.+++.+.++-+..+-.-..+.+.+
T Consensus 178 ~av~~~r~~~~~~kIeVE--v~tle-qa~ea~~agaDiI~LDn~--~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~ 252 (284)
T PRK06096 178 GAINQLRRHAPEKKIVVE--ADTPK-EAIAALRAQPDVLQLDKF--SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKN 252 (284)
T ss_pred HHHHHHHHhCCCCCEEEE--CCCHH-HHHHHHHcCCCEEEECCC--CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHH
Confidence 467777765 45556663 33433 456678999999998544 3567888888777656677888888888888888
Q ss_pred hhcc-cceEEE
Q 029661 93 VLDV-VDLVLI 102 (190)
Q Consensus 93 ~~~~-~d~i~~ 102 (190)
|... +|+|..
T Consensus 253 yA~tGvD~Is~ 263 (284)
T PRK06096 253 YADCGIRLFIT 263 (284)
T ss_pred HHhcCCCEEEE
Confidence 8875 999854
No 486
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=91.53 E-value=4.3 Score=29.87 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=52.3
Q ss_pred HHHHHhCCcEEEEEcCCCCHHHHHHh-h-cccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCC-CCeEEEeCCC
Q 029661 68 NQIKDLGAKAGVVLNPATSLSAIECV-L-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGGV 144 (190)
Q Consensus 68 ~~i~~~g~~~g~~i~p~t~~~~~~~~-~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~-~~~i~vdGGI 144 (190)
..++.+|.++. .+-...|.+.+.+- . ..+|.|.+-+.. |. +...++++.+++.+.+. ++++.+.|++
T Consensus 21 ~~L~~~GfeVi-dLG~~v~~e~~v~aa~~~~adiVglS~L~-t~--------~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 21 HAFTEAGFNVV-NLGVLSPQEEFIDAAIETDADAILVSSLY-GH--------GEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEeccc-cC--------CHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 34555676652 33344454443332 2 247777653332 21 22333444444545554 6788888885
Q ss_pred --CcccH----HHHHHcCCCEEEEcccccCC-CCHHHHHHHHH
Q 029661 145 --GPKNA----YKVIEAGANALVAGSAVFGA-KDYAEAIKGIK 180 (190)
Q Consensus 145 --~~e~~----~~~~~aGad~~VvGsaI~~~-~dp~~~~~~l~ 180 (190)
.++.. .++.++|.|. +|.. .++.+.+..|+
T Consensus 91 ~i~~~d~~~~~~~L~~~Gv~~------vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 91 VVGKQDFEDVEKRFKEMGFDR------VFAPGTPPEEAIADLK 127 (128)
T ss_pred CCChhhhHHHHHHHHHcCCCE------EECcCCCHHHHHHHHh
Confidence 34444 5699999873 4433 46666666664
No 487
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=91.51 E-value=8.5 Score=33.22 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHHHHHhhc-ccceEEE-EeeecCCCCcc-
Q 029661 37 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLI-MSVNPGFGGQS- 113 (190)
Q Consensus 37 ~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~~~~~~~-~~d~i~~-m~v~pG~~gq~- 113 (190)
..+++.+.++|++.|-+..-. ..+...+.++.+.+.+...-+...-....+.++..++ .+|.|-+ .++.+-..-.+
T Consensus 25 ~~ia~~L~~~Gv~~IEvG~p~-~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~ 103 (363)
T TIGR02090 25 VEIARKLDELGVDVIEAGFPI-ASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKL 103 (363)
T ss_pred HHHHHHHHHcCCCEEEEeCCC-CChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh
Confidence 346777888999988875332 1334556777777766655443221223344555443 3666543 22221110001
Q ss_pred --cchhhHHHHHHHHHHHhhcCCCCeEEE-eCCCC-cc----cHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHh
Q 029661 114 --FIESQVKKISDLRRMCLEKGVNPWIEV-DGGVG-PK----NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182 (190)
Q Consensus 114 --~~~~~~~ki~~~~~~~~~~~~~~~i~v-dGGI~-~e----~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~~ 182 (190)
-.++.++++.+.-++..+.+..+.+.. |.+-. ++ -++.+.++|+|.+.+.-.. ..-.|.+..+.++..
T Consensus 104 ~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~-G~~~P~~v~~li~~l 179 (363)
T TIGR02090 104 KKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTV-GVLTPQKMEELIKKL 179 (363)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-CccCHHHHHHHHHHH
Confidence 134556666666666666665555443 44433 34 3445678899988776332 344666555544443
No 488
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=91.47 E-value=3.2 Score=33.52 Aligned_cols=153 Identities=22% Similarity=0.231 Sum_probs=79.4
Q ss_pred CCCHHHHHHhccC-CCC--cEEEEEeecCh-HHHHHHHHH-cCCCEEEEcccCCCcchHHHHHHHHHHh--CCcEEE--E
Q 029661 10 TIGPLVVDALRPV-TDL--PLDVHLMIVEP-EQRVPDFIK-AGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGV--V 80 (190)
Q Consensus 10 ~~G~~~v~~i~~~-~~~--~i~~hlmv~dp-~~~i~~~~~-~Gad~v~vh~e~~~~~~~~~~i~~i~~~--g~~~g~--~ 80 (190)
.||-.-+.++... ... .+.-|| +-+. .+-++.+.. --+++| |.-. +.+.+.++-+++.+. |..+.+ -
T Consensus 48 ~fGENrvQe~~~K~~~l~~~i~wHf-IG~LQ~NK~k~i~~~~~~~~i--hsvD-s~~la~~L~~~a~~~~~~~~~~VlIq 123 (227)
T cd06822 48 HFGENYVQELIEKAPDLPIDIKWHF-IGHLQSNKVKKLLKVPNLYMV--ETVD-SEKLADKLNKAWEKLGEREPLKVMVQ 123 (227)
T ss_pred cccCcHHHHHHHHHHhccCCceEEE-ECCCchhhHHHHhccccccEE--EecC-CHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3565566665432 111 244454 3222 123444433 235655 4432 233444455555556 655444 4
Q ss_pred EcCCC-------CHHHHHHhh-------cccceEEEEeeecCCCC-cccchhhHHHHHHHHHHHhhc-CCC--CeEEEeC
Q 029661 81 LNPAT-------SLSAIECVL-------DVVDLVLIMSVNPGFGG-QSFIESQVKKISDLRRMCLEK-GVN--PWIEVDG 142 (190)
Q Consensus 81 i~p~t-------~~~~~~~~~-------~~~d~i~~m~v~pG~~g-q~~~~~~~~ki~~~~~~~~~~-~~~--~~i~vdG 142 (190)
+|... +.+.+.+++ +.+.+.-+|+..|-... +.-....+++++++++.+.+. +.. ++ .+..
T Consensus 124 Vn~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~-~lSm 202 (227)
T cd06822 124 VNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDL-ELSM 202 (227)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEe
Confidence 55333 113233322 23456677877543222 122234577788877776654 333 23 4677
Q ss_pred CCCcccHHHHHHcCCCEEEEcccccC
Q 029661 143 GVGPKNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 143 GI~~e~~~~~~~aGad~~VvGsaI~~ 168 (190)
|.|++ ....++.|++.+=+||+||+
T Consensus 203 GmS~D-~~~Ai~~GsT~VRiGt~IFg 227 (227)
T cd06822 203 GMSAD-FEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred cccHh-HHHHHHcCCCEEeCCchhcC
Confidence 77766 44467799999999999995
No 489
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=91.42 E-value=8.2 Score=33.08 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=80.2
Q ss_pred CCHHHHHHhcc---CCCCcEEEEEeecChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 11 IGPLVVDALRP---VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 11 ~G~~~v~~i~~---~~~~~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
+|.+-++.|++ .+++++....|-.. .++.+.+. +|++-+.... ..+ ..+++++-+.|+.+.+--.+...+
T Consensus 141 ~g~~gL~~L~~~~~~~Gl~v~tev~d~~---~~~~l~~~-vd~lqIgAr~--~~N-~~LL~~va~~~kPViLk~G~~~ti 213 (335)
T PRK08673 141 LGEEGLKLLAEAREETGLPIVTEVMDPR---DVELVAEY-VDILQIGARN--MQN-FDLLKEVGKTNKPVLLKRGMSATI 213 (335)
T ss_pred ccHHHHHHHHHHHHHcCCcEEEeeCCHH---HHHHHHHh-CCeEEECccc--ccC-HHHHHHHHcCCCcEEEeCCCCCCH
Confidence 34455555544 47888888665543 34555666 8999998764 333 458888888899888877766344
Q ss_pred HHHHH---hhc---ccceEEEEeeecCCCCc-ccchhh--HHHHHHHHHHHhhcCCCCeEEEeCCCCc-------ccHHH
Q 029661 88 SAIEC---VLD---VVDLVLIMSVNPGFGGQ-SFIESQ--VKKISDLRRMCLEKGVNPWIEVDGGVGP-------KNAYK 151 (190)
Q Consensus 88 ~~~~~---~~~---~~d~i~~m~v~pG~~gq-~~~~~~--~~ki~~~~~~~~~~~~~~~i~vdGGI~~-------e~~~~ 151 (190)
+.+.. ++. .-+.+++ +-|...- ...... +..+..+|+. +++++.+|-+=+. .....
T Consensus 214 ~E~l~A~e~i~~~GN~~viL~---erG~~tf~~~~~~~ldl~ai~~lk~~-----~~lPVi~d~sH~~G~~~~v~~~a~A 285 (335)
T PRK08673 214 EEWLMAAEYILAEGNPNVILC---ERGIRTFETATRNTLDLSAVPVIKKL-----THLPVIVDPSHATGKRDLVEPLALA 285 (335)
T ss_pred HHHHHHHHHHHHcCCCeEEEE---ECCCCCCCCcChhhhhHHHHHHHHHh-----cCCCEEEeCCCCCccccchHHHHHH
Confidence 33222 221 1233433 3333111 111222 4445555544 2467766533222 23456
Q ss_pred HHHcCCCEEEEccccc
Q 029661 152 VIEAGANALVAGSAVF 167 (190)
Q Consensus 152 ~~~aGad~~VvGsaI~ 167 (190)
.+.+|||++++-.-..
T Consensus 286 AvA~GAdGliIE~H~~ 301 (335)
T PRK08673 286 AVAAGADGLIVEVHPD 301 (335)
T ss_pred HHHhCCCEEEEEecCC
Confidence 6889999998876544
No 490
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.39 E-value=4.4 Score=33.77 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=63.5
Q ss_pred HHHHHHhccCCCCcEEEEEee--cChHHHHHHHHHcCCCEEEEcc---------cCC-----------Cc----chHHHH
Q 029661 13 PLVVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHC---------EQS-----------ST----IHLHRT 66 (190)
Q Consensus 13 ~~~v~~i~~~~~~~i~~hlmv--~dp~~~i~~~~~~Gad~v~vh~---------e~~-----------~~----~~~~~~ 66 (190)
.++++++|+..++|+.+.+-. .+...+.+.+.++|+|+++++- +.. +. ....+.
T Consensus 146 ~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~ 225 (301)
T PRK07259 146 YEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRM 225 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHH
Confidence 566777887778899986642 2344567788999999998731 100 00 001345
Q ss_pred HHHHHHh-CCcEEEEEcCCCCHHHHHHhh-cccceEEEEeeecCCCCcccchhhHHHHH-HHHHHHhhcC
Q 029661 67 LNQIKDL-GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKIS-DLRRMCLEKG 133 (190)
Q Consensus 67 i~~i~~~-g~~~g~~i~p~t~~~~~~~~~-~~~d~i~~m~v~pG~~gq~~~~~~~~ki~-~~~~~~~~~~ 133 (190)
+..+++. ++ +.+...--+..+.+.+++ ..+|.|.+-+- --..|..+++++ .+.++..+++
T Consensus 226 v~~i~~~~~i-pvi~~GGI~~~~da~~~l~aGAd~V~igr~------ll~~P~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 226 VYQVYQAVDI-PIIGMGGISSAEDAIEFIMAGASAVQVGTA------NFYDPYAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred HHHHHHhCCC-CEEEECCCCCHHHHHHHHHcCCCceeEcHH------HhcCcHHHHHHHHHHHHHHHHcC
Confidence 6666664 33 334444434555556654 45888765221 112455666554 4445555444
No 491
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=91.31 E-value=3.1 Score=34.69 Aligned_cols=129 Identities=17% Similarity=0.117 Sum_probs=72.8
Q ss_pred cEEEEEeecChHHHHHHHHHcCCCEEEEcccCC--------------CcchHHHHHHHHHHhCCcEEEEEcCCCCH----
Q 029661 26 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLNPATSL---- 87 (190)
Q Consensus 26 ~i~~hlmv~dp~~~i~~~~~~Gad~v~vh~e~~--------------~~~~~~~~i~~i~~~g~~~g~~i~p~t~~---- 87 (190)
.+.++ ...+... ++.+.++|++.|.+..-+. ..+.+.+.++.+|++|+++.+.+.-.++.
T Consensus 68 ~v~~~-~r~~~~d-ie~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~ 145 (279)
T cd07947 68 EVTGW-IRANKED-LKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYG 145 (279)
T ss_pred EEEEE-ecCCHHH-HHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCccc
Confidence 35554 4455444 5888999999999853221 12235667778889999988776533322
Q ss_pred ---HHHHHhhc-----ccc-eEEEEeeecCCCCccc-----chhhHHHHHHHHHHHhhcCCCCeEEE----eCCCCcccH
Q 029661 88 ---SAIECVLD-----VVD-LVLIMSVNPGFGGQSF-----IESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNA 149 (190)
Q Consensus 88 ---~~~~~~~~-----~~d-~i~~m~v~pG~~gq~~-----~~~~~~ki~~~~~~~~~~~~~~~i~v----dGGI~~e~~ 149 (190)
+.++++.+ .+| .|.+ +=..|... ++ +.++.+.++.+++..+ -.+.+|++ |-|....|.
T Consensus 146 ~v~~~~~~~~~~~~~~G~~~~i~l-~DTvG~a~-P~~~~~~p~~v~~l~~~l~~~~~--~p~~~l~~H~Hn~~Gla~AN~ 221 (279)
T cd07947 146 FVLPFVNKLMKLSKESGIPVKIRL-CDTLGYGV-PYPGASLPRSVPKIIYGLRKDCG--VPSENLEWHGHNDFYKAVANA 221 (279)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEe-ccCCCcCC-ccccccchHHHHHHHHHHHHhcC--CCCceEEEEecCCCChHHHHH
Confidence 34555554 256 3433 22223221 11 1344555666665421 01123443 556666677
Q ss_pred HHHHHcCCCEE
Q 029661 150 YKVIEAGANAL 160 (190)
Q Consensus 150 ~~~~~aGad~~ 160 (190)
-..+++|++.+
T Consensus 222 laA~~aG~~~v 232 (279)
T cd07947 222 VAAWLYGASWV 232 (279)
T ss_pred HHHHHhCCCEE
Confidence 78899999975
No 492
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=91.28 E-value=4.8 Score=32.81 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=67.4
Q ss_pred cCh-HHHHHHHHHcCCCEEEEcc---cCC----CcchHHHHHHHHHHhCCcEEEEEcCCCCH--------HHHHHhhccc
Q 029661 34 VEP-EQRVPDFIKAGADIVSVHC---EQS----STIHLHRTLNQIKDLGAKAGVVLNPATSL--------SAIECVLDVV 97 (190)
Q Consensus 34 ~dp-~~~i~~~~~~Gad~v~vh~---e~~----~~~~~~~~i~~i~~~g~~~g~~i~p~t~~--------~~~~~~~~~~ 97 (190)
-|+ .+.++++.+.|+|.++.|- ... .......-++.+.++|+-+.-+ .|++ ..+.+.+..-
T Consensus 43 lD~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~li~~~I~vy~~---Ht~lD~~~~G~n~~La~~Lgl~ 119 (249)
T TIGR00486 43 VDASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGRLKILLQNDISLYSA---HTNLDAHDGGNNDALARALGLE 119 (249)
T ss_pred ecCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHHHHHHHHCCCeEEEe---ecchhcCCCCHHHHHHHHcCCC
Confidence 355 3468899999999999982 110 0122333377788888765433 2332 2344444332
Q ss_pred ceEEEEeeec-CCC--CcccchhhH-HHHHHHHHHHhhc-----C-C--C-CeEEEeCCCCcccHHHHHHcCCCEEEEcc
Q 029661 98 DLVLIMSVNP-GFG--GQSFIESQV-KKISDLRRMCLEK-----G-V--N-PWIEVDGGVGPKNAYKVIEAGANALVAGS 164 (190)
Q Consensus 98 d~i~~m~v~p-G~~--gq~~~~~~~-~ki~~~~~~~~~~-----~-~--~-~~i~vdGGI~~e~~~~~~~aGad~~VvGs 164 (190)
+.- ...+ |.+ |..-.|.++ +-++++++.++-. + . . -+|++-+|-....+..+.+.|||.+|-|-
T Consensus 120 ~~~---~~~~~g~G~vg~l~~~~~~~~~~~~vk~~l~~~~vr~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd 196 (249)
T TIGR00486 120 NPK---EFEDYGLGRVGEFKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGD 196 (249)
T ss_pred ccc---cccCCCceeEEECCCCCCHHHHHHHHHHHhCCCCEEEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecC
Confidence 211 1121 222 211122222 2234444443210 0 0 1 15888888888788888899999999884
No 493
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=91.27 E-value=4.8 Score=34.27 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=64.4
Q ss_pred HHHHHhccCCCCcEEEEEeec----ChHHHHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHHhCCcEEEEEcCCCCHHH
Q 029661 14 LVVDALRPVTDLPLDVHLMIV----EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 89 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv~----dp~~~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~~~ 89 (190)
..++.+.+.+++|+.++- +. ||..+-+.+..++-.--.+..- +.++.+++...++++|..++... +. +++.
T Consensus 114 ~~Vk~V~eavd~PL~Id~-s~n~~kD~evleaale~~~g~~pLInSa--t~en~~~i~~lA~~y~~~Vva~s-~~-Dln~ 188 (319)
T PRK04452 114 KTVEEVLQAVDVPLIIGG-SGNPEKDAEVLEKVAEAAEGERCLLGSA--EEDNYKKIAAAAMAYGHAVIAWS-PL-DINL 188 (319)
T ss_pred HHHHHHHHhCCCCEEEec-CCCCCCCHHHHHHHHHHhCCCCCEEEEC--CHHHHHHHHHHHHHhCCeEEEEc-HH-HHHH
Confidence 356666666888887532 33 6665544444444232333333 25578899999999998766543 22 2554
Q ss_pred HHHhhcc-----c--ceEEEEeeecCCC----CcccchhhHHHHHHHHHHHhhcCCCCeEE
Q 029661 90 IECVLDV-----V--DLVLIMSVNPGFG----GQSFIESQVKKISDLRRMCLEKGVNPWIE 139 (190)
Q Consensus 90 ~~~~~~~-----~--d~i~~m~v~pG~~----gq~~~~~~~~ki~~~~~~~~~~~~~~~i~ 139 (190)
++++... + +.|++ +|+.. |+...-..+++||++-=. +++.+.+++.
T Consensus 189 ak~L~~~l~~~Gi~~edIvi---DP~~~~lg~g~e~~~~~~e~IR~aAl~-~d~~l~~P~i 245 (319)
T PRK04452 189 AKQLNILLTELGVPRERIVM---DPTTGALGYGIEYSYSVMERIRLAALK-GDEMLQMPMI 245 (319)
T ss_pred HHHHHHHHHHcCCCHHHEEE---eCCcccccCCHHHHHHHHHHHHHHHhc-CCCcCCCCeE
Confidence 4444321 2 33332 67765 666555556666554332 3444566653
No 494
>PRK06354 pyruvate kinase; Provisional
Probab=91.24 E-value=6.7 Score=36.23 Aligned_cols=140 Identities=13% Similarity=0.157 Sum_probs=84.2
Q ss_pred HHHHHHHcCCCEEEEcccCCCcchHHHHHHHHHH-hCCcEEEEEcCCCC--HHHHHHhhcccceEEEEeeecCCC-Cccc
Q 029661 39 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-LGAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVNPGFG-GQSF 114 (190)
Q Consensus 39 ~i~~~~~~Gad~v~vh~e~~~~~~~~~~i~~i~~-~g~~~g~~i~p~t~--~~~~~~~~~~~d~i~~m~v~pG~~-gq~~ 114 (190)
.++...+.|+|+|.+-.-- +.+++.++-+.+.+ .|....+...-+|+ ++.+.++++.+|-|++-.-+-|.. |
T Consensus 183 di~f~~~~~vD~ia~SFVr-~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g--- 258 (590)
T PRK06354 183 DLIFGLEQGVDWIALSFVR-NPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLGVEIP--- 258 (590)
T ss_pred HHHHHHHcCCCEEEEcCCC-CHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccchhhcccC---
Confidence 4566789999999987543 34567677777744 36566665544444 678889988899998732222211 1
Q ss_pred chhhHHHHHHHHHHHhhcCCCCeEEEeCCC--------Cc-----ccHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 029661 115 IESQVKKISDLRRMCLEKGVNPWIEVDGGV--------GP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181 (190)
Q Consensus 115 ~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI--------~~-----e~~~~~~~aGad~~VvGsaI~~~~dp~~~~~~l~~ 181 (190)
.+......+++.+.+.+.+. ++-+.-=+ .| ..+..++--|+|.+.+..-=-....|.++++.+++
T Consensus 259 ~e~v~~~qk~ii~~~~~~gk--pvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~ 336 (590)
T PRK06354 259 AEEVPLLQKRLIKKANRLGK--PVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMAT 336 (590)
T ss_pred cHHHHHHHHHHHHHHHHcCC--CEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHH
Confidence 23334444455454444443 22222111 11 15556777899999987443334688999988887
Q ss_pred hhc
Q 029661 182 SKR 184 (190)
Q Consensus 182 ~~~ 184 (190)
.+.
T Consensus 337 I~~ 339 (590)
T PRK06354 337 IAV 339 (590)
T ss_pred HHH
Confidence 553
No 495
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=91.23 E-value=1.4 Score=32.55 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHcCCCEEEEccc-----C------------CCcchHHHHHHHHHHhCCcEEEEEcCCCCH
Q 029661 35 EPEQRVPDFIKAGADIVSVHCE-----Q------------SSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87 (190)
Q Consensus 35 dp~~~i~~~~~~Gad~v~vh~e-----~------------~~~~~~~~~i~~i~~~g~~~g~~i~p~t~~ 87 (190)
||+++++.+.++|+|.+++.+- + ...+-+.++++++++.|+++..-++....-
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~ 70 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDE 70 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecCh
Confidence 6889999999999999999211 0 012336899999999999998877766443
No 496
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.20 E-value=0.72 Score=41.65 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=48.9
Q ss_pred EEEEEcCCCCHHHHHHhhc-ccceEEEEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCC-cccHHHHHH
Q 029661 77 AGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 154 (190)
Q Consensus 77 ~g~~i~p~t~~~~~~~~~~-~~d~i~~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~-~e~~~~~~~ 154 (190)
++-++++....++.+.+++ .+|.|.+ ...+|.+ ...++.|+++|+..+. +..| ..|.|- ++.+..+++
T Consensus 234 V~~av~~~~~~~ra~~Lv~aGvd~i~v-d~a~g~~-----~~~~~~i~~ir~~~~~---~~~V-~aGnV~t~e~a~~li~ 303 (502)
T PRK07107 234 VGAGINTRDYAERVPALVEAGADVLCI-DSSEGYS-----EWQKRTLDWIREKYGD---SVKV-GAGNVVDREGFRYLAE 303 (502)
T ss_pred eeeccChhhHHHHHHHHHHhCCCeEee-cCccccc-----HHHHHHHHHHHHhCCC---CceE-EeccccCHHHHHHHHH
Confidence 3445555433566666665 4888765 2334432 2457778888876541 1323 455555 789999999
Q ss_pred cCCCEEEEc
Q 029661 155 AGANALVAG 163 (190)
Q Consensus 155 aGad~~VvG 163 (190)
+|||++.+|
T Consensus 304 aGAd~I~vg 312 (502)
T PRK07107 304 AGADFVKVG 312 (502)
T ss_pred cCCCEEEEC
Confidence 999999993
No 497
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=91.11 E-value=4 Score=33.97 Aligned_cols=124 Identities=13% Similarity=0.063 Sum_probs=74.6
Q ss_pred HHHHHHHHHcC-----CCEEEEcccCCCcchHHHHHHHHHHhCC-cEEEEEcCCCCHHHHHHhhc-ccceEEE-EeeecC
Q 029661 37 EQRVPDFIKAG-----ADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLD-VVDLVLI-MSVNPG 108 (190)
Q Consensus 37 ~~~i~~~~~~G-----ad~v~vh~e~~~~~~~~~~i~~i~~~g~-~~g~~i~p~t~~~~~~~~~~-~~d~i~~-m~v~pG 108 (190)
.++++.+.++| .+.|=+.... ..+.+ .+..+.+.+. ..++........+.++..++ .+|.|.+ +++.+.
T Consensus 24 v~i~~~L~~~G~~~~~v~~IE~~s~~--~~d~~-~v~~~~~~~~~~~~v~~~~r~~~~die~A~~~g~~~v~i~~s~S~~ 100 (279)
T cd07947 24 VKIYDYLHELGGGSGVIRQTEFFLYT--EKDRE-AVEACLDRGYKFPEVTGWIRANKEDLKLVKEMGLKETGILMSVSDY 100 (279)
T ss_pred HHHHHHHHHcCCCCCccceEEecCcC--hHHHH-HHHHHHHcCCCCCEEEEEecCCHHHHHHHHHcCcCEEEEEEcCCHH
Confidence 35788899999 9988886542 33443 4444445554 34554332222344444443 4665543 344333
Q ss_pred CCCccc---chhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc-------cHHHHHH----cCCC-EEEEc
Q 029661 109 FGGQSF---IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------NAYKVIE----AGAN-ALVAG 163 (190)
Q Consensus 109 ~~gq~~---~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e-------~~~~~~~----aGad-~~VvG 163 (190)
+.-.++ .++.+++++++.++.++++..+.+.+.|..+++ .+.++.+ +|+| .+-+.
T Consensus 101 ~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~ 170 (279)
T cd07947 101 HIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLC 170 (279)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEec
Confidence 221122 477788888888888887777788888888762 4666666 8999 45444
No 498
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=91.06 E-value=8.1 Score=32.17 Aligned_cols=137 Identities=13% Similarity=0.232 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCEEEEcccCC-C-cchHHHHHHHHHH-hCCcEEEEEc-CCCCHHHHHHhhc-----ccceEEEEeeecC
Q 029661 38 QRVPDFIKAGADIVSVHCEQS-S-TIHLHRTLNQIKD-LGAKAGVVLN-PATSLSAIECVLD-----VVDLVLIMSVNPG 108 (190)
Q Consensus 38 ~~i~~~~~~Gad~v~vh~e~~-~-~~~~~~~i~~i~~-~g~~~g~~i~-p~t~~~~~~~~~~-----~~d~i~~m~v~pG 108 (190)
..++.+.+.+.+.|++-..++ + .+.--++...+++ .|+.+..=+. -+..-..++.++. .++-|++++-+|.
T Consensus 20 ~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 20 ERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred HHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 346677889999999976542 1 1222345566664 4888865332 3333345555542 3777888777663
Q ss_pred CCC-------cccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCcc-------------cHHHHHHcCCCEEEEcccccC
Q 029661 109 FGG-------QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------------NAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 109 ~~g-------q~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~e-------------~~~~~~~aGad~~VvGsaI~~ 168 (190)
..+ ..|.. ..+.|+.+|+..+ .++.|.+ +..|| .+++=+++||| +++--.+|.
T Consensus 100 ~~~~~~~~~~~~f~~-a~~Li~~i~~~~~---~~f~igv--a~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~-f~iTQ~~Fd 172 (281)
T TIGR00677 100 HIGDDWTEVEGGFQY-AVDLVKYIRSKYG---DYFCIGV--AGYPEGHPEAESVELDLKYLKEKVDAGAD-FIITQLFYD 172 (281)
T ss_pred CCCCCCCCCCCCCcC-HHHHHHHHHHhCC---CceEEEE--EECCCCCCCCCCHHHHHHHHHHHHHcCCC-Eeeccceec
Confidence 222 12333 6666777665532 2244444 44432 22222369999 555667777
Q ss_pred CCCHHHHHHHHHH
Q 029661 169 AKDYAEAIKGIKT 181 (190)
Q Consensus 169 ~~dp~~~~~~l~~ 181 (190)
.+...+.++++++
T Consensus 173 ~~~~~~f~~~~~~ 185 (281)
T TIGR00677 173 VDNFLKFVNDCRA 185 (281)
T ss_pred HHHHHHHHHHHHH
Confidence 6555555555554
No 499
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=91.05 E-value=0.56 Score=41.74 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=49.4
Q ss_pred HHHHHhccCCCCcEEEEEee-cChHHHHHHHHHcCCCEEEEcccCCCc------------chHHHHHHHHHHhCCcEEEE
Q 029661 14 LVVDALRPVTDLPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSST------------IHLHRTLNQIKDLGAKAGVV 80 (190)
Q Consensus 14 ~~v~~i~~~~~~~i~~hlmv-~dp~~~i~~~~~~Gad~v~vh~e~~~~------------~~~~~~i~~i~~~g~~~g~~ 80 (190)
++.+.|++. ++.+.+..-. .+ .+.++.+.++|+..+.+..|+++. ++..+.++.++++|+.+...
T Consensus 265 ~l~~~l~~~-~i~~~~~~~~~~~-~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~ 342 (472)
T TIGR03471 265 EIARKLGPL-GVTWSCNARANVD-YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGT 342 (472)
T ss_pred HHHHHHhhc-CceEEEEecCCCC-HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 344444442 4444443322 23 347888999999999999998521 23556788888999988643
Q ss_pred --Ec-CCCCHHHHHHhh
Q 029661 81 --LN-PATSLSAIECVL 94 (190)
Q Consensus 81 --i~-p~t~~~~~~~~~ 94 (190)
+. |....+.+++.+
T Consensus 343 ~IiGlPget~e~~~~ti 359 (472)
T TIGR03471 343 FILGLPGETRETIRKTI 359 (472)
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 33 555555555544
No 500
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=91.03 E-value=6.3 Score=32.91 Aligned_cols=130 Identities=20% Similarity=0.255 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHcCCCEEEEcccC------CCcchHHHHHHHHHHhCCcEEE-EEcCCCC--HHHHHHhhcc-cceEE---
Q 029661 35 EPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGV-VLNPATS--LSAIECVLDV-VDLVL--- 101 (190)
Q Consensus 35 dp~~~i~~~~~~Gad~v~vh~e~------~~~~~~~~~i~~i~~~g~~~g~-~i~p~t~--~~~~~~~~~~-~d~i~--- 101 (190)
.|.+..+...+.|-++|.+-..+ +.-.+..+++++||+.+=...+ .+.|+.. ...++.+++. .|...
T Consensus 101 EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNv 180 (306)
T COG0320 101 EPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVADAGPDVFNHNV 180 (306)
T ss_pred hHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHhcCcchhhccc
Confidence 36778888899999999986432 1124578899999998755555 4555544 2344444443 34321
Q ss_pred ------EEeeecCCCCcccchhhHHHHHHHHHHHhhcCCCCeEEEeCCCCc----ccHHHHHHcCCCEEEEcccccC
Q 029661 102 ------IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP----KNAYKVIEAGANALVAGSAVFG 168 (190)
Q Consensus 102 ------~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~~~~~i~vdGGI~~----e~~~~~~~aGad~~VvGsaI~~ 168 (190)
.-.|.||.+- ...++-+++.+++.++.-.+..|.++=|=+. ++..++.++|+|++.+|-++--
T Consensus 181 ETVprL~~~VRp~A~Y----~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqP 253 (306)
T COG0320 181 ETVPRLYPRVRPGATY----ERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQP 253 (306)
T ss_pred ccchhcccccCCCCcH----HHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCC
Confidence 1233455432 3467778888887655433445778888774 4778899999999999998863
Done!