RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 029661
(190 letters)
>gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase.
Length = 229
Score = 320 bits (823), Expect = e-113
Identities = 117/192 (60%), Positives = 134/192 (69%), Gaps = 6/192 (3%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIGP VV ALR TD PLD HLM+ PE VPDF KAGA I + H EQ+ST
Sbjct: 42 MDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQAST 101
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQ 118
IHLHR + QIK G KAGVVLNP T + A+E V++ VD+VL+MSV PGFGGQSFI S
Sbjct: 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSM 161
Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
+ K+ LR+ E IEVDGGVGP K EAGAN +VAGSAVFGA DYAE I G
Sbjct: 162 MDKVRALRKKYPEL----DIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISG 217
Query: 179 IKTSKRPQAVAV 190
++ S AVAV
Sbjct: 218 LRASVEKAAVAV 229
>gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.
Length = 220
Score = 295 bits (759), Expect = e-103
Identities = 106/185 (57%), Positives = 135/185 (72%), Gaps = 2/185 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIGP VV+A+R VT LPLDVHLM+ P++ VPDF KAGADI++ H E ++
Sbjct: 38 MDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVE--AS 95
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+HR L IK G KAG+VLNPAT L +E VLD++DLVL+MSVNPGFGGQ FI ++
Sbjct: 96 EHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLE 155
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI +LR++ E+G++ IEVDGG+ N + EAGA+ VAGSAVFGA DY EAI ++
Sbjct: 156 KIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLR 215
Query: 181 TSKRP 185
Sbjct: 216 AELAA 220
>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme
catalyses the interconversion of D-ribulose 5-phosphate
(Ru5P) into D-xylulose 5-phosphate, as part of the
Calvin cycle (reductive pentose phosphate pathway) in
chloroplasts and in the oxidative pentose phosphate
pathway. In the Calvin cycle Ru5P is phosphorylated by
phosphoribulose kinase to ribulose-1,5-bisphosphate,
which in turn is used by RubisCO
(ribulose-1,5-bisphosphate carboxylase/oxygenase) to
incorporate CO2 as the central step in carbohydrate
synthesis.
Length = 211
Score = 290 bits (746), Expect = e-101
Identities = 105/180 (58%), Positives = 129/180 (71%), Gaps = 2/180 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+T GP VV ALR TDLPLDVHLM+ PE+ + F KAGADI++ H E +T
Sbjct: 34 MDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAE--AT 91
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
HLHRT+ IK+LG KAGV LNP T + +E LD VDLVL+MSVNPGFGGQ FI ++
Sbjct: 92 DHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLE 151
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI LR + E +N IEVDGG+ + + EAGA+ LVAGSA+FG+ DYAEAIK ++
Sbjct: 152 KIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211
>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate
transport and metabolism].
Length = 220
Score = 267 bits (685), Expect = 5e-92
Identities = 103/183 (56%), Positives = 131/183 (71%), Gaps = 3/183 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPNIT GP VV ALR +TDLPLDVHLM+ P++ + F KAGADI++ H E +T
Sbjct: 38 MDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAE--AT 95
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+HRT+ IK+LG KAG+VLNPAT L A+E VLD VDLVL+MSVNPGFGGQ FI ++
Sbjct: 96 EHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLE 155
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI +LR M E+ + IEVDGG+ + ++ AGA+ VAGSA+FGA DY I+ ++
Sbjct: 156 KIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELR 214
Query: 181 TSK 183
Sbjct: 215 GEL 217
>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family.
This enzyme catalyzes the conversion of D-ribulose
5-phosphate into D-xylulose 5-phosphate.
Length = 201
Score = 264 bits (677), Expect = 4e-91
Identities = 109/170 (64%), Positives = 135/170 (79%), Gaps = 2/170 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIGPLVV+ALRP+T+LPLDVHLM+ EP++ +PDF +AGADI+S H E ++
Sbjct: 34 MDGHFVPNLTIGPLVVEALRPLTELPLDVHLMVEEPDRIIPDFAEAGADIISFHAE--AS 91
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H HRT+ IK+ GAKAG+VLNPAT L AIE +LD +DLVL+MSVNPGFGGQSFI S +
Sbjct: 92 DHPHRTIQLIKEAGAKAGLVLNPATPLDAIEYLLDDLDLVLLMSVNPGFGGQSFIPSVLP 151
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170
KI +R+M E G++ IEVDGGV N ++ EAGA+ LVAGSAVFGA
Sbjct: 152 KIRKVRKMIDEGGLDTLIEVDGGVNLDNIPQIAEAGADVLVAGSAVFGAP 201
>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase. This family
consists of Ribulose-phosphate 3-epimerase, also known
as pentose-5-phosphate 3-epimerase (PPE). PPE converts
D-ribulose 5-phosphate into D-xylulose 5-phosphate in
Calvin's reductive pentose phosphate cycle. It has been
found in a wide range of bacteria, archebacteria, fungi
and plants [Energy metabolism, Pentose phosphate
pathway].
Length = 210
Score = 263 bits (675), Expect = 8e-91
Identities = 106/180 (58%), Positives = 137/180 (76%), Gaps = 2/180 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+T GP V++ALR TDLP+DVHLM+ P++ + DF +AGADI++VH E ++
Sbjct: 33 MDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPE--AS 90
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+HR L IKDLGAKAG+VLNPAT L +E VL VDLVL+MSVNPGFGGQ FI ++
Sbjct: 91 EHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLE 150
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI ++R+M E G++ IEVDGGV NA ++ EAGA+ LVAGSA+FGA DY E I+ ++
Sbjct: 151 KIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGADDYKEVIRSLR 210
>gnl|CDD|236616 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional.
Length = 229
Score = 175 bits (445), Expect = 1e-55
Identities = 63/172 (36%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+T+ P V ++ + PLDVHLM+ +P+ + AGAD +++H E +
Sbjct: 36 MDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETING 95
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
R +++I+ G K G+VLNP T + +I+ + ++D + +M+V+PGF GQ FI +
Sbjct: 96 -QAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLD 154
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG-SAVFGAKD 171
KI++L+ + G+ IEVDG K K++EAGA+ + G S +F +
Sbjct: 155 KIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDE 206
>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase;
Provisional.
Length = 228
Score = 169 bits (431), Expect = 2e-53
Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLP-LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MDG FVPN++ GP VV +LR LD HLM+ PE+ V DF KAGA + H E +
Sbjct: 41 MDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATE 100
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIES 117
+I++ G K GV + P T + + ++D +VD+VL+M+V PGFGGQSF+
Sbjct: 101 DDPK-AVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHD 159
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
+ K+ +LR+ + + I+VDGG+ + +AGAN +VAGS++F AKD +AI+
Sbjct: 160 MMPKVRELRK----RYPHLNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIE 215
Query: 178 GIKTS 182
++ S
Sbjct: 216 LLRES 220
>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional.
Length = 220
Score = 169 bits (429), Expect = 2e-53
Identities = 87/182 (47%), Positives = 119/182 (65%), Gaps = 3/182 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+T G + ALR P+DVHLM+ ++ +PDF KAGA +++ H E S
Sbjct: 34 MDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASE 93
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
H+ RTL IK+ G +AGVVLNPAT L +E ++D VDL+L+MSVNPGFGGQSFI +
Sbjct: 94 --HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTL 151
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
K+ +R+M E G + +E+DGGV N ++ EAGA+ VAGSA+FG DY I +
Sbjct: 152 DKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEM 211
Query: 180 KT 181
+
Sbjct: 212 RA 213
>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional.
Length = 223
Score = 166 bits (422), Expect = 3e-52
Identities = 91/184 (49%), Positives = 119/184 (64%), Gaps = 5/184 (2%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQS 58
MD +VPN+TIGP+V ALR P+DVHLM VEP R VPDF AGA +S H E S
Sbjct: 38 MDNHYVPNLTIGPMVCQALRKHGITAPIDVHLM-VEPVDRIVPDFADAGATTISFHPEAS 96
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
H+HRT+ IK G +AG+VLNPAT + ++ VL +DLVL+MSVNPGFGGQ+FI S
Sbjct: 97 R--HVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSA 154
Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
+ K+ +R+ G +E+DGGV N + AGA+ VAGSA+F A DYA+ I
Sbjct: 155 LDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQ 214
Query: 179 IKTS 182
++ +
Sbjct: 215 MRAA 218
>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated.
Length = 210
Score = 89.3 bits (221), Expect = 2e-22
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 2 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 61
D F+ NIT G + A+ T PL HLM+ P++ +P + +H E S
Sbjct: 36 DTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAE--SVQ 93
Query: 62 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 121
+ L I+ +GAKAG+ LNPAT L + +D ++IM+ P GQ FI + +K
Sbjct: 94 NPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEK 153
Query: 122 ISDLRRMCLEKGVNPWIE--VDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY 172
+S R P E DGG+ + A + AGA LV G A+F +Y
Sbjct: 154 VSQSREHF------PAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANY 200
>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional.
Length = 254
Score = 77.8 bits (191), Expect = 1e-17
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 13/176 (7%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG+F P T+GP V L P T + DVHLM+ + +KAGA +++ E
Sbjct: 54 MDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GD 109
Query: 61 IHLHRTLNQIK---------DLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 111
IHLH TL+ + ++ G+ L PAT L I +L V+++ +++VNPG+G
Sbjct: 110 IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGS 169
Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
+ ++++ L + +K I +DG + +I G + +V+GSA+F
Sbjct: 170 KMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated.
Length = 228
Score = 73.4 bits (180), Expect = 3e-16
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 2 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 61
DG+F P T+G + + P DVHLM+ + + + AGADIV++ EQ T
Sbjct: 48 DGQFSPFFTVGAIAIKQF-PTHCFK-DVHLMVRDQFEVAKACVAAGADIVTLQVEQ--TH 103
Query: 62 HLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
L T+ + G+ L P T +S +E LD +DL+ I++++P G ++ + +
Sbjct: 104 DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLIL 163
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
++ + + V I +DG + + A + + + +V+GSA+F + +K
Sbjct: 164 DRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKEW 223
Query: 180 KTS 182
K+S
Sbjct: 224 KSS 226
>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN.
Length = 200
Score = 59.1 bits (143), Expect = 4e-11
Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 13/172 (7%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPD----FIKAGADIVSVHCE 56
T V+ + TDLPL V L I + V AGAD V +H
Sbjct: 34 RSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGA 93
Query: 57 QSSTI-HLHRTLNQIKD--LGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQS 113
+ ++++ K V L+P L+A VD V + + G GG+
Sbjct: 94 VGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRD 153
Query: 114 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGS 164
+ I+DL + ++G + GG+ P++A + + GA+ ++ GS
Sbjct: 154 AVP-----IADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200
>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of
this protein family are 3-hexulose-6-phosphate synthase
(HPS), or the HPS domain of a fusion protein. This
enzyme is part of the ribulose monophosphate (RuMP)
pathway, which in one direction removes the toxic
metabolite formaldehyde by assimilation into
fructose-6-phosphate. In the other direction, in species
lacking a complete pentose phosphate pathway, the RuMP
pathway yields ribulose-5-phosphate, necessary for
nucleotide biosynthesis, at the cost of also yielding
formaldehyde. These latter species tend usually have a
formaldehyde-activating enzyme to attach formaldehyde to
the C1 carrier tetrahydromethanopterin. In these
species, the enzyme is viewed as a lyase rather than a
synthase and is called D-arabino 3-hexulose 6-phosphate
formaldehyde lyase. Note that there is some overlap in
specificity with the Escherichia coli enzyme
3-keto-L-gulonate 6-phosphate decarboxylase.
Length = 206
Score = 40.8 bits (96), Expect = 1e-04
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 122 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
DL+ + L+ + V GG+ VI+ G + ++ G A+ A D AEA + I+
Sbjct: 146 FEDLQTI-LKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203
>gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins
[Carbohydrate transport and metabolism].
Length = 217
Score = 40.3 bits (95), Expect = 2e-04
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 111 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170
G+S+ E ++KI L + + + V GG+ P++ GA+ ++ G A+ GAK
Sbjct: 146 GKSWGEDDLEKIKKLSDLGAK------VAVAGGITPEDIPLFKGIGADIVIVGRAITGAK 199
Query: 171 DYAEAIKGIKTS 182
D AEA + K
Sbjct: 200 DPAEAARKFKEE 211
>gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed.
Length = 212
Score = 39.0 bits (92), Expect = 6e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
GG+ P+NA +V+EAGA+ + SA+ GA+D A +
Sbjct: 167 GGITPENAPEVLEAGADGVAVVSAITGAEDPEAAAR 202
>gnl|CDD|233555 TIGR01740, pyrF, orotidine 5'-phosphate decarboxylase, subfamily 1.
This model represents orotidine 5'-monophosphate
decarboxylase, the PyrF protein of pyrimidine nucleotide
biosynthesis. In many eukaryotes, the region hit by this
model is part of a multifunctional protein [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 214
Score = 38.9 bits (91), Expect = 6e-04
Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Query: 44 IKAGADIVSVH-CEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 101
IK GAD+V+VH ++ ++ G A L TS+ + D ++ V+
Sbjct: 73 IKLGADMVNVHGVAGKESVEAAKEAASEFGRRGLLAVAEL---TSMGSEAYGEDTMEAVI 129
Query: 102 IMSVN------PGFGGQSFIESQVKKI-SDLRRMCLEKGVNPWIEV-DGGVGPKNAYKVI 153
+ G + +++K D + G+ + D
Sbjct: 130 EYAKEAKEFGLDGPVCSAEEAKEIRKATGDFLILT--PGIRLDSKDADDQQRVVTLEDAK 187
Query: 154 EAGANALVAGSAVFGAKDYAEAIKGIK 180
EAGA+ ++ G ++ A+D EA K I+
Sbjct: 188 EAGADVIIVGRGIYAAEDPVEAAKRIR 214
>gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution
of the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-
(beta-hydroxyethyl) thiazole phosphate to yield thiamine
phosphate. TenI is a enzymatically inactive regulatory
protein involved in the regulation of several
extracellular enzymes. This superfamily also contains
other enzymatically inactive proteins with unknown
functions.
Length = 196
Score = 37.9 bits (89), Expect = 0.001
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
GG+ P+NA +V+ AGA+ + SA+ GA D A A +
Sbjct: 157 GGITPENAAEVLAAGADGVAVISAITGADDPAAAAR 192
>gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase
(KGPDC) and D-arabino-3-hexulose-6-phosphate synthase
(HPS). KGPDC catalyzes the formation of L-xylulose
5-phosphate and carbon dioxide from 3-keto-L-gulonate
6-phosphate as part of the anaerobic pathway for
L-ascorbate utilization in some eubacteria. HPS
catalyzes the formation of
D-arabino-3-hexulose-6-phosphate from D-ribulose
5-phosphate and formaldehyde in microorganisms that can
use formaldehyde as a carbon source. Both catalyze
reactions that involve the Mg2+-assisted formation and
stabilization of 1,2-enediolate reaction intermediates.
Length = 202
Score = 37.2 bits (87), Expect = 0.002
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 124 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
DL+++ GV + V GG+ P + +AGA+ ++ G A+ GA D AEA +
Sbjct: 149 DLKKVKKLLGVK--VAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202
>gnl|CDD|223429 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme
metabolism].
Length = 211
Score = 36.5 bits (85), Expect = 0.004
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 181
GG+ +N +V+EAGA+ + SA+ A D A A K ++
Sbjct: 165 GGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRN 204
>gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 404
Score = 36.2 bits (83), Expect = 0.007
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 34 VEPEQRVPDFIKAGADIV---SVHCEQSSTIHLHRTL-NQIKDLGAKAGVVLNPATSLSA 89
++ +RV + +KA DI+ S H + I L + + + +L AG ++ +L
Sbjct: 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDL 211
Query: 90 IECVLDVVDLVLIMSVNPGFGGQSFIES-----QVKKISDLRRMCLEKGVNPWIEVDGGV 144
I D L + + PG + I + Q+ I D+ +C K N I DGG+
Sbjct: 212 ISVGADC----LKVGIGPGSICTTRIVAGVGVPQITAICDVYEVC--KNTNICIIADGGI 265
Query: 145 G-PKNAYKVIEAGANALVAGSAVFGAKD 171
+ K I AGA++++ G+ G K+
Sbjct: 266 RFSGDVVKAIAAGADSVMIGNLFAGTKE 293
>gnl|CDD|233094 TIGR00693, thiE, thiamine-phosphate pyrophosphorylase. This model
represents the thiamine-phosphate pyrophosphorylase,
ThiE, of a number of bacteria, and N-terminal domains of
bifunctional thiamine proteins of Saccharomyces
cerevisiae and Schizosaccharomyces pombe, in which the
C-terminal domain corresponds to the bacterial
hydroxyethylthiazole kinase (EC 2.7.1.50), ThiM. This
model includes ThiE from Bacillus subtilis but excludes
its paralog, the regulatory protein TenI , and neighbors
of TenI [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 196
Score = 34.5 bits (80), Expect = 0.014
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 125 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
LR + P + + GG+ +NA +V+ AGA+ + SA+ A D A K +
Sbjct: 143 LREIAATSIDIPIVAI-GGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196
>gnl|CDD|183964 PRK13307, PRK13307, bifunctional formaldehyde-activating
enzyme/3-hexulose-6-phosphate synthase; Provisional.
Length = 391
Score = 34.6 bits (80), Expect = 0.024
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 131 EKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
+ G + V GGV +N + ++AGA+ LV G A+ +KD A +
Sbjct: 326 KAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAE 372
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 34.0 bits (78), Expect = 0.036
Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 27/198 (13%)
Query: 4 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVHCEQSSTI 61
RFV N + P + A+R P+ V V + K G D V +H +S
Sbjct: 37 RFVGNKFLAPNLEKAIRKAGGRPVGV---FVNESAKAMLKFSKKNGIDFVQLHGAESKAE 93
Query: 62 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG--QSFIESQV 119
+ K + +++ A ++ D V L + +GG +SF
Sbjct: 94 PAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFD---W 150
Query: 120 KKISD--LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV------AGSAVFGAKD 171
+K + + + GG+ P N ++I ++ G K
Sbjct: 151 EKFYNYNFKFPFF---------LSGGLSPTNFDRIINLTHPQILGIDVSSGFEDSPGNKK 201
Query: 172 YAEAIKGIKTSKRPQAVA 189
I K+
Sbjct: 202 LTLLKSFITNVKKKYLSD 219
>gnl|CDD|215795 pfam00215, OMPdecase, Orotidine 5'-phosphate decarboxylase / HUMPS
family. This family includes Orotidine 5'-phosphate
decarboxylase enzymes EC:4.1.1.23 that are involved in
the final step of pyrimidine biosynthesis. The family
also includes enzymes such as hexulose-6-phosphate
synthase. This family appears to be distantly related to
pfam00834.
Length = 217
Score = 33.0 bits (76), Expect = 0.060
Identities = 35/151 (23%), Positives = 51/151 (33%), Gaps = 21/151 (13%)
Query: 43 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG------VVLNPATSLSAIECVLDV 96
K GADIV+VH TL K+ + G L+ SL E
Sbjct: 74 KAKLGADIVTVHAYAGD-----GTLKAAKEAAEEYGKGLLLVAELSSKGSLDLQEEGDLG 128
Query: 97 VDLVLI-----MSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 149
++ ++ G G S E + D + G+ GG
Sbjct: 129 YTQEIVHRAADLAAFAGVDGVVASATEPEAALGPDFLLLT--PGIGLQGGDAGGQQRVTT 186
Query: 150 YKVI-EAGANALVAGSAVFGAKDYAEAIKGI 179
V EAGA+ ++ G + GA D A + I
Sbjct: 187 PAVAKEAGADIIIVGRGITGAGDPVAAARAI 217
>gnl|CDD|202027 pfam01884, PcrB, PcrB family. This family contains proteins that
are related to PcrB. The function of these proteins is
unknown.
Length = 231
Score = 31.3 bits (71), Expect = 0.20
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 140 VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 183
V GG+ + A ++ AGA+ +V G+ + AI I +
Sbjct: 187 VGGGIKSGEKAKEMARAGADVIVTGNVIEEKGKVERAIDAILETL 231
>gnl|CDD|235054 PRK02615, PRK02615, thiamine-phosphate pyrophosphorylase;
Provisional.
Length = 347
Score = 31.4 bits (72), Expect = 0.26
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 136 PWIEVDGGVGPKNAYKVIEAGAN--ALVAGSAVFGAKDYAEAIKGIKT 181
PW + GG+ N +V++AGA A+V A+ GA+D +A + +
Sbjct: 296 PWFAI-GGIDKSNIPEVLQAGAKRVAVV--RAIMGAEDPKQATQELLK 340
>gnl|CDD|147701 pfam05690, ThiG, Thiazole biosynthesis protein ThiG. This family
consists of several bacterial thiazole biosynthesis
protein G sequences. ThiG, together with ThiF and ThiH,
is proposed to be involved in the synthesis of
4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an
intermediate in the thiazole production pathway.
Length = 246
Score = 30.2 bits (69), Expect = 0.55
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
VD G+G P +A + +E GA+A++ +A+ AKD A A K
Sbjct: 179 VDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFK 220
>gnl|CDD|224933 COG2022, ThiG, Uncharacterized enzyme of thiazole biosynthesis
[Nucleotide transport and metabolism].
Length = 262
Score = 30.3 bits (69), Expect = 0.57
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
VD G+G P +A + +E GA+A++ +A+ AKD A A
Sbjct: 187 VDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFA 228
>gnl|CDD|225555 COG3010, NanE, Putative N-acetylmannosamine-6-phosphate epimerase
[Carbohydrate transport and metabolism].
Length = 229
Score = 29.9 bits (68), Expect = 0.58
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 146 PKNAYKVIEAGANALVAGSAV----FGAKDYAEAIKGI 179
P+ A K IE GA+A+V GSA+ + + +AIK
Sbjct: 192 PEQAKKAIEIGADAVVVGSAITRPEEITQWFVDAIKSA 229
>gnl|CDD|224560 COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel
fold [General function prediction only].
Length = 240
Score = 29.9 bits (68), Expect = 0.66
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 140 VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYA-EAIKGIK 180
V GG+ P+ A ++ EAGA+ +V G+ + D A E ++ IK
Sbjct: 196 VGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVEAIK 238
>gnl|CDD|181086 PRK07695, PRK07695, transcriptional regulator TenI; Provisional.
Length = 201
Score = 29.6 bits (67), Expect = 0.69
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFG-------AKDYAEAIKG 178
GG+ P+N V+ AG + + S +F AK YAE+IK
Sbjct: 156 GGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKK 199
>gnl|CDD|234679 PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.
Length = 548
Score = 29.8 bits (68), Expect = 0.86
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 6 VPNITIG-----P-LVVDALRPVTDLPLDVH 30
V NI IG P +V +ALRP D L VH
Sbjct: 148 VVNIGIGGSDLGPVMVTEALRPYADPGLRVH 178
>gnl|CDD|237520 PRK13813, PRK13813, orotidine 5'-phosphate decarboxylase;
Provisional.
Length = 215
Score = 29.2 bits (66), Expect = 0.91
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 143 GVGPKN--AYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
G+G + A I+AGA+ ++ G +++ A D EA K I
Sbjct: 170 GIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAI 208
>gnl|CDD|233243 TIGR01036, pyrD_sub2, dihydroorotate dehydrogenase, subfamily 2.
This model describes enzyme protein dihydroorotate
dehydrogenase exclusively for subfamily 2. It includes
members from bacteria, yeast, plants etc. The
subfamilies 1 and 2 share extensive homology,
particularly toward the C-terminus. This subfamily has a
longer N-terminal region [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 336
Score = 29.8 bits (67), Expect = 0.92
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 98 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLE-KGVNPWIEVDGGVGPKNAYKVIEAG 156
LV GG S Q+K +RR+ LE G P I V G ++A + I AG
Sbjct: 251 SLVQGPKNCDQTGGLSGKPLQLKSTEIIRRLYLELNGRLPIIGVGGIDSAQDAREKIAAG 310
Query: 157 ANAL 160
A+ L
Sbjct: 311 ASLL 314
>gnl|CDD|223361 COG0284, PyrF, Orotidine-5'-phosphate decarboxylase [Nucleotide
transport and metabolism].
Length = 240
Score = 29.2 bits (66), Expect = 1.3
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 19/154 (12%)
Query: 43 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV--------L 94
GAD V+VH L K+ G + TSL+++ +
Sbjct: 85 AADLGADAVTVHAFGGF-----DMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINS 139
Query: 95 DVVDLVLIMSVNPGFGGQSFI-----ESQ-VKKISDLRRMCLEKGVNPWIEVDGGVGPKN 148
+ + VL ++ G G + E +++I + L G+ +
Sbjct: 140 SLEEQVLRLAKLAGEAGLDGVVCSAEEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMT 199
Query: 149 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
+ + AGA+ +V G + A D A + I
Sbjct: 200 PGEAVRAGADYIVVGRPITQAGDPVAAARAIARE 233
>gnl|CDD|165164 PHA02813, PHA02813, hypothetical protein; Provisional.
Length = 354
Score = 29.1 bits (65), Expect = 1.5
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 22 VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 81
++D+ LD + +++ E+ DF D + + HL LN G + +
Sbjct: 87 ISDIILDNTITLIKYEK--GDFFNNHRDFIHFKSKNCYCYHLVLYLNNTSK-GGNTNIHI 143
Query: 82 NPATSLSAIECVLDVVDLVLIMSVNP 107
T S VL D L S +
Sbjct: 144 KDNTIFSTKNDVL--FDKTLNHSSDI 167
>gnl|CDD|153287 cd07603, BAR_ACAPs, The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP
with Coiled-coil, ANK repeat and PH domain containing
proteins. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. This subfamily is
composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat
and PH domain containing proteins), which are Arf GTPase
activating proteins (GAPs) containing an N-terminal BAR
domain, followed by a Pleckstrin homology (PH) domain,
an Arf GAP domain, and C-terminal ankyrin (ANK) repeats.
Vertebrates contain at least three members, ACAP1,
ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific
GAPs, involved in the regulation of endocytosis,
phagocytosis, cell adhesion and migration, by mediating
Arf6 signaling. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 200
Score = 28.4 bits (64), Expect = 1.7
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA----YKVIEA--GANALVAGSA 165
Q+F++ +KK+ + ++ EK + ++D + KNA K EA N L A +
Sbjct: 93 QNFVKEDIKKVKESKKH-FEKISD---DLDNALV-KNAQAPRSKPQEAEEATNILTATRS 147
Query: 166 VFG--AKDYAEAIKGIKTSKRPQAV 188
F A DY I ++ KR + +
Sbjct: 148 CFRHTALDYVLQINVLQAKKRHEIL 172
>gnl|CDD|240079 cd04728, ThiG, Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous
cofactor that plays an important role in carbohydrate
and amino acid metabolism. ThiG catalyzes the formation
of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP)
and dehydroglycine, with the help of the sulfur carrier
protein ThiS that carries the sulfur needed for thiazole
assembly on its carboxy terminus (ThiS-COSH).
Length = 248
Score = 28.6 bits (65), Expect = 1.8
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
VD G+G P +A + +E GA+A++ +A+ AKD A A K
Sbjct: 180 VDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFK 221
>gnl|CDD|235912 PRK07028, PRK07028, bifunctional hexulose-6-phosphate
synthase/ribonuclease regulator; Validated.
Length = 430
Score = 28.4 bits (64), Expect = 2.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 138 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
I V GG+ + A K + AGA+ ++ G + + D EA + I+ +
Sbjct: 165 IAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREA 209
>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 479
Score = 28.3 bits (64), Expect = 2.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 16 VDALRPVTDLPLDVHLM---IVEPEQRVPDFIKAGADIVSV 53
++ALR V L V ++ +V E D ++AGADIV V
Sbjct: 256 LEALRAVRALDPGVPIVAGNVVTAEG-TRDLVEAGADIVKV 295
>gnl|CDD|215245 PLN02446, PLN02446,
(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase.
Length = 262
Score = 28.1 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 138 IEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
++V GGV +NA ++AGA+ ++ S VF
Sbjct: 86 LQVGGGVNSENAMSYLDAGASHVIVTSYVF 115
>gnl|CDD|217120 pfam02581, TMP-TENI, Thiamine monophosphate synthase/TENI.
Thiamine monophosphate synthase (TMP) (EC:2.5.1.3)
catalyzes the substitution of the pyrophosphate of
2-methyl-4-amino-5- hydroxymethylpyrimidine
pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole
phosphate to yield thiamine phosphate. This Pfam family
also includes the regulatory protein TENI.
Length = 180
Score = 27.5 bits (62), Expect = 3.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAV 166
GG+ P+N +V+EAGA+ + SA+
Sbjct: 156 GGITPENVPEVLEAGADGVAVVSAI 180
>gnl|CDD|234410 TIGR03949, bact_IIb_cerein, class IIb bacteriocin, lactobin
A/cerein 7B family. Members of this protein family are
described variably as bacteriocins per se, one chain of
a two-chain bacteriocin, or bacteriocin enhancer
proteins. All members of the seed alignment occur in
paired gene contexts with another member of the same
protein family. This family includes bacteriocins that
appear not to undergo post-translational modification,
other than cleavage at a Gly-Gly motif coupled to
sec-independent export. For many members, the N-terminal
bacteriocin cleavage motif region is recognized by
TIGR01847. C-terminal to the cleavage motif, these
proteins are hydrophobic and low in complexity,
consistent with pore-forming activity as a mechanism of
bacteriocin action.
Length = 45
Score = 25.4 bits (56), Expect = 3.5
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 139 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170
V+GGV P + GA V GA
Sbjct: 11 NVNGGVAPIAVAIAVGGGAGGAAGAGFVAGAA 42
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 27.5 bits (61), Expect = 4.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 7 PNITIGPLVVD------ALRPVTDLPLDVHLMIVEPEQRVPDFIKAGAD 49
PNI I LV D AL + D P DV+ +E +R+ F++ GA
Sbjct: 141 PNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGAT 189
>gnl|CDD|176987 CHL00046, atpI, ATP synthase CF0 A subunit.
Length = 228
Score = 27.2 bits (61), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 110 GGQSFIESQVKKISDLRRMCL-EKGVNPWI 138
GGQ+F E ++ I DL + + E+ PW+
Sbjct: 53 GGQNFFEYVLEFIRDLAKTQIGEEEYRPWV 82
>gnl|CDD|234687 PRK00208, thiG, thiazole synthase; Reviewed.
Length = 250
Score = 26.9 bits (61), Expect = 5.4
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
VD G+G P +A + +E GA+A++ +A+ A D A A K
Sbjct: 180 VDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFK 221
>gnl|CDD|234907 PRK01130, PRK01130, N-acetylmannosamine-6-phosphate 2-epimerase;
Provisional.
Length = 221
Score = 26.6 bits (60), Expect = 7.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 146 PKNAYKVIEAGANALVAGSAVFG----AKDYAEAIK 177
P+ A K +E GA+A+V G A+ K + +A+K
Sbjct: 185 PEQAKKALELGAHAVVVGGAITRPEEITKWFVDALK 220
>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase;
Provisional.
Length = 368
Score = 26.8 bits (60), Expect = 7.5
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 21/75 (28%)
Query: 50 IVSVHCEQSSTIHLHRTLNQIKDLGAKA-----GVVLNPATSLSAIECVLDVVDL---VL 101
+ VHCE ++ I LN + ++ A A ++++ +S AI +D+ +L L
Sbjct: 135 VALVHCETTTGI-----LNPLDEIAAVAKRHGKRLIVDAMSSFGAIP--IDIAELGIDAL 187
Query: 102 IMSVN------PGFG 110
I S N PGFG
Sbjct: 188 ISSANKCIEGVPGFG 202
>gnl|CDD|188621 cd09901, H3TH_FEN1-like, H3TH domains of Flap endonuclease-1
(FEN1)-like structure specific 5' nucleases: FEN1
(eukaryotic) and EXO1. The 5' nucleases within this
family are capable of both 5'-3' exonucleolytic activity
and cleaving bifurcated or branched DNA, in an
endonucleolytic, structure-specific manner, and are
involved in DNA replication, repair, and recombination.
This family includes the H3TH (helix-3-turn-helix)
domains of eukaryotic Flap Endonuclease-1 (FEN1),
Exonuclease-1 (EXO1), and other eukaryotic homologs.
These nucleases contain a PIN (PilT N terminus) domain
with a helical arch/clamp region/I domain (not included
here) and inserted within the PIN domain is an atypical
helix-hairpin-helix-2 (HhH2)-like region. This atypical
HhH2 region, the H3TH domain, has an extended loop with
at least three turns between the first two helices, and
only three of the four helices appear to be conserved.
Both the H3TH domain and the helical arch/clamp region
are involved in DNA binding. Studies suggest that a
glycine-rich loop in the H3TH domain contacts the
phosphate backbone of the template strand in the
downstream DNA duplex. The nucleases within this family
have a carboxylate rich active site that is involved in
binding essential divalent metal ion cofactors (i. e.,
Mg2+, Mn2+, Zn2+, or Co2+) required for nuclease
activity. The first metal binding site is composed
entirely of Asp/Glu residues from the PIN domain,
whereas, the second metal binding site is composed
generally of two Asp residues from the PIN domain and
one Asp residue from the H3TH domain. Together with the
helical arch and network of amino acids interacting with
metal binding ions, the H3TH region defines a positively
charged active-site DNA-binding groove in
structure-specific 5' nucleases.
Length = 73
Score = 25.2 bits (56), Expect = 8.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 143 GVGPKNAYKVI 153
G+GPK AYK+I
Sbjct: 20 GIGPKTAYKLI 30
>gnl|CDD|214380 CHL00162, thiG, thiamin biosynthesis protein G; Validated.
Length = 267
Score = 26.6 bits (59), Expect = 8.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 170
+D G+G P A + +E GA+ ++ +AV AK
Sbjct: 194 IDAGIGTPSEASQAMELGASGVLLNTAVAQAK 225
>gnl|CDD|238931 cd01971, Nitrogenase_VnfN_like, Nitrogenase_vnfN_like: VnfN subunit
of the VnfEN complex-like. This group in addition to
VnfN contains a subset of the beta subunit of the
nitrogenase MoFe protein and NifN-like proteins. The
nitrogenase enzyme system catalyzes the ATP-dependent
reduction of dinitrogen to ammonia. NifEN participates
in the synthesis of the iron-molybdenum cofactor
(FeMoco) of MoFe protein of the
molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur
containing precursor of the FeMoco) from NifB is
transferred to NifEN where it is further processed to
FeMoco. VnfEN may similarly be a scaffolding protien
for the iron-vanadium cofactor (FeVco) of the
vanadium-dependent (V)-nitrogenase. NifE and NifN are
essential for the Mo-nitrogenase, VnfE and VnfN are not
essential for the V-nitrogenase. NifE and NifN can
substitute when the vnfEN genes are inactivated.
Length = 427
Score = 26.6 bits (59), Expect = 9.3
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 35 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL 94
+ +V FIKA + E+ S L + V+ + +L ++
Sbjct: 260 IEKAKVEAFIKAEEKRYYHYLERFSDFMARWGLP------RRFAVIADSTYALGLARFLV 313
Query: 95 DVVDLV---LIMSVNPGFGGQSFIESQVK 120
+ + V +++ NP +S IE++ +
Sbjct: 314 NELGWVPAKQVITDNPPEKYRSAIENEFE 342
>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase and restricted to the
high GC Gram-positive bacteria. All species in which a
member is found so far (Corynebacterium glutamicum,
Mycobacterium tuberculosis, Streptomyces coelicolor,
etc.) also have IMP dehydrogenase as described by
TIGRFAMs entry TIGR01302 [Unknown function, General].
Length = 475
Score = 26.8 bits (59), Expect = 9.6
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 15 VVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKAGADIVSV 53
++ A++ V L L V ++ V + V D ++AGA+I+ V
Sbjct: 253 MISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKV 293
>gnl|CDD|232779 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase. This protein family
consists of HisA,
phosphoribosylformimino-5-aminoimidazole carboxamide
ribotide isomerase, the enzyme catalyzing the fourth
step in histidine biosynthesis. It is closely related to
the enzyme HisF for the sixth step. Examples of this
enzyme in Actinobacteria have been found to be
bifunctional, also possessing phosphoribosylanthranilate
isomerase activity ; the trusted cutoff here has now
been raised to 275.0 to exclude the bifunctional group,
now represented by model TIGR01919. HisA from
Lactococcus lactis was reported to be inactive
(MEDLINE:93322317) [Amino acid biosynthesis, Histidine
family].
Length = 230
Score = 26.4 bits (59), Expect = 9.7
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 93 VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-AYK 151
+ VVDL + G +KKI + ++V GG+ K
Sbjct: 44 RIHVVDL------DGAKEGGPVNLPVIKKIV--------RETGVPVQVGGGIRSLEDVEK 89
Query: 152 VIEAGANALVAGSAVF 167
+++ G + ++ G+A
Sbjct: 90 LLDLGVDRVIIGTAAV 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,783,478
Number of extensions: 923444
Number of successful extensions: 1213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1184
Number of HSP's successfully gapped: 108
Length of query: 190
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 99
Effective length of database: 6,901,388
Effective search space: 683237412
Effective search space used: 683237412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)