RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029661
(190 letters)
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 343 bits (882), Expect = e-122
Identities = 169/186 (90%), Positives = 179/186 (96%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct: 45 MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 104
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 105 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 164
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct: 165 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 224
Query: 181 TSKRPQ 186
TSKRP+
Sbjct: 225 TSKRPE 230
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 341 bits (878), Expect = e-121
Identities = 127/190 (66%), Positives = 154/190 (81%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPL+VDA+RP+T LDVHLMIVEPE+ V DF KAGADI+SVH E +++
Sbjct: 39 MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS 98
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
HLHRTL QI++LG KAG VLNP+T L +E VL V DL+LIMSVNPGFGGQSFI +
Sbjct: 99 PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLP 158
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI LR+MC E+G++PWIEVDGG+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++
Sbjct: 159 KIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR 218
Query: 181 TSKRPQAVAV 190
SKRP+
Sbjct: 219 NSKRPEPQLA 228
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 316 bits (813), Expect = e-112
Identities = 90/182 (49%), Positives = 125/182 (68%), Gaps = 2/182 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG+FVPNI+ G VV ++R + L D HLM+V+PE+ V F +AGADI+++H E ST
Sbjct: 38 MDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE--ST 95
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+H L +IK G KAGVV+NP T +A+E +LD+VD VLIM+VNPGFGGQ+FI ++
Sbjct: 96 RHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLE 155
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
K++ + + EKG++ IEVDGGV K EAGAN VAGS +F A D ++ ++
Sbjct: 156 KVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR 215
Query: 181 TS 182
T+
Sbjct: 216 TA 217
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 309 bits (795), Expect = e-108
Identities = 73/183 (39%), Positives = 107/183 (58%), Gaps = 3/183 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD +VPN+T GP+V+ ALR +DVHLM+ + + F KAGA + H E +
Sbjct: 62 MDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE--A 119
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
+ H+ R+L IK G +AG+ LNPAT + ++ V +D VLIMSVNPGFGGQ FI + +
Sbjct: 120 SEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAML 179
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
K ++ + + +E+DGGV P N ++ G NA VAGSA+F + Y + I +
Sbjct: 180 DKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKM 239
Query: 180 KTS 182
+
Sbjct: 240 RDE 242
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 296 bits (761), Expect = e-103
Identities = 58/184 (31%), Positives = 102/184 (55%), Gaps = 3/184 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+T+ P V ++ + PLD HLM+ P+ + +AGAD +++H E +
Sbjct: 34 MDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPE-TIN 92
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
R +++I+ K G++LNP T + A++ + D + +M+V+PGF GQ FI +
Sbjct: 93 GQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLD 152
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF--GAKDYAEAIKG 178
K+++L+ +G+ IEVDG K++ AGA+ + G++ A++ EA +
Sbjct: 153 KLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRI 212
Query: 179 IKTS 182
+
Sbjct: 213 MTAQ 216
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 293 bits (753), Expect = e-102
Identities = 74/185 (40%), Positives = 103/185 (55%), Gaps = 8/185 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIG V+ +LR T LD HLM+ P V KAGA + H E S
Sbjct: 41 MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD 100
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIES 117
+ + IK G + GV L P T + + +++ V+LVL+M+V PGFGGQ F+
Sbjct: 101 -NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPE 159
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
++K+ LR+ + IEVDGG+GP AGAN +VAGS++FGA + E I
Sbjct: 160 MMEKVRALRKKYP----SLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVIS 215
Query: 178 GIKTS 182
++ S
Sbjct: 216 ALRKS 220
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 288 bits (739), Expect = e-100
Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 8/184 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 58
MDG FVPNIT G VV++LR D D+H+M+ +PEQ V AGA+ + H E
Sbjct: 39 MDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE-- 96
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
+T + + I++ G K G+ + P TS+ + + +D+ L+M+V PGFGGQ F+E
Sbjct: 97 ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDM 156
Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
+ K+ LR + IEVDGGVGP +K EAGAN +V+GSA+ ++D I
Sbjct: 157 MPKVHWLRTQFP----SLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINL 212
Query: 179 IKTS 182
++
Sbjct: 213 LRNV 216
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 278 bits (714), Expect = 2e-96
Identities = 42/193 (21%), Positives = 81/193 (41%), Gaps = 16/193 (8%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
DG+F T+G + + T DVHLM+ + + GA++V++ E
Sbjct: 48 ADGQFSSLFTVGAIGIKYFP--THCFKDVHLMVRNQLEVAKAVVANGANLVTLQLE--QY 103
Query: 61 IHLHRTLNQIKDL---------GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 111
T+ + G L P T +S +E LD +D++ +++++P G
Sbjct: 104 HDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQIDVIQLLTLDPRNGT 163
Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA--LVAGSAVFGA 169
+ E + ++ + + + V I +DG + + A + LV+GSA+F
Sbjct: 164 KYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG 223
Query: 170 KDYAEAIKGIKTS 182
+ +K K+S
Sbjct: 224 -ELKTNLKVWKSS 235
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 270 bits (692), Expect = 3e-93
Identities = 63/188 (33%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 1 MDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD FVPN++ GP V++ L+ T + DVHLM+ PE+ VP ++ ++ H E +
Sbjct: 40 MDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLL--KTSNQLTFHFE-AL 96
Query: 60 TIHLHRTL---NQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSF 114
R + +I+D G+ + P T + + +LD +++ VL+M+V PGFGGQSF
Sbjct: 97 NEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSF 156
Query: 115 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 174
+ + K+S LR+ N I+VDGG+ + GAN +VAG+++F A+D
Sbjct: 157 MHDMMGKVSFLRKKYK----NLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKY 212
Query: 175 AIKGIKTS 182
I ++ S
Sbjct: 213 VIDTMRVS 220
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 108 bits (270), Expect = 1e-29
Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 12/188 (6%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCE-- 56
++ V + +G +V+ LR + D + + V GAD ++ C
Sbjct: 34 IEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSAT 93
Query: 57 QSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDVVDLVLI-MSVNPGFGGQSF 114
+ + + I + V + T A + + + + S + G+++
Sbjct: 94 IPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAGETW 153
Query: 115 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 174
E + K+ L + + V GG+ +AG + AK+ A
Sbjct: 154 GEKDLNKVKKLI------EMGFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEAKNPAG 207
Query: 175 AIKGIKTS 182
A + K
Sbjct: 208 AARAFKDE 215
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 104 bits (260), Expect = 2e-28
Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 11/186 (5%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCEQS 58
++ + + G V L+ + + I + + + +A AD V+V C +
Sbjct: 32 IEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVIC-CA 90
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLI-MSVNPGFGGQSFIE 116
L+ K+ + L + A + + V+ S + G ++ E
Sbjct: 91 DINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGE 150
Query: 117 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
+ + I L + + V GG+ ++ + +AG ++ A EA
Sbjct: 151 ADITAIKRLS------DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAA 204
Query: 177 KGIKTS 182
+ K S
Sbjct: 205 RQFKRS 210
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 103 bits (258), Expect = 4e-28
Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 9/184 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCEQS 58
++ G V+ A++ D + + ++ + D KAGAD+V+V +
Sbjct: 29 IELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGS-A 87
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 118
+ + + V L + + + + ++ G Q+
Sbjct: 88 DDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALG-AKFVEMHAGLDEQAKPGFD 146
Query: 119 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 178
+ + + V GGV V +AGA VAG A++GA D A A K
Sbjct: 147 LNGLLAAG-----EKARVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGAADPAAAAKE 201
Query: 179 IKTS 182
++ +
Sbjct: 202 LRAA 205
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 100 bits (251), Expect = 7e-27
Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 11/181 (6%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRV-PDFIKAGADIVSVHCEQS 58
++ + G V LR + L + + + +AGAD ++V +
Sbjct: 35 IEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAA-A 93
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIE 116
+ +L + + + ++ + +D + + S + G +
Sbjct: 94 HIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTT 153
Query: 117 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
+ K+ L + + + GG+ P++ Y +AG A+ GA+ A
Sbjct: 154 DDLDKMRQL------SALGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTAA 207
Query: 177 K 177
Sbjct: 208 A 208
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 90.3 bits (224), Expect = 6e-23
Identities = 28/185 (15%), Positives = 66/185 (35%), Gaps = 10/185 (5%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCEQS 58
++ I G + A++ + I++ AGAD V+V +
Sbjct: 29 IEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV-T 87
Query: 59 STIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 117
+ + + K+ G + V ++ + + + + +++V+ G Q+
Sbjct: 88 DVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRK 145
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
+ + + ++ I V GG+ + G + ++ GSA+ A D A +
Sbjct: 146 PIDDLITMLKVRR----KARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEAR 201
Query: 178 GIKTS 182
I
Sbjct: 202 KISQV 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 7e-05
Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 75/183 (40%)
Query: 63 LHRTLN-Q----------IKDLGAKAGVVLNPAT----SL---SAIEC---VL---DVVD 98
L T Q +DL +K G++ AT SL +A+ V+ +V+
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSK-GLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 99 LV---------------------LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG---- 133
+V ++++NPG SF + ++ + + R+ G
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE--RVGKRTGWLVE 1842
Query: 134 -VNPWIEVDGGVGPKNA----YKVIEAG-ANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 187
VN N Y V AG AL + V ++ + ++ I + ++
Sbjct: 1843 IVN-----------YNVENQQY-VA-AGDLRALDTVTNVL---NFIK-LQKIDIIELQKS 1885
Query: 188 VAV 190
+++
Sbjct: 1886 LSL 1888
Score = 31.9 bits (72), Expect = 0.14
Identities = 40/206 (19%), Positives = 55/206 (26%), Gaps = 78/206 (37%)
Query: 5 FVPNITIGP---L--VVDALRPVTDLP-LDVHLMIVEPEQRVPDFIKAGADIVSV--HCE 56
V ++ GP L + LR LD + +R F + + H
Sbjct: 377 LV--VS-GPPQSLYGLNLTLRKAKAPSGLDQSR--IPFSERKLKFSNRFLPV-ASPFHSH 430
Query: 57 QSSTIHLHRTLNQI-KDLGAKAGVVLNPA--------T-------SLSAIECVLDVVDLV 100
L + I KDL K V N T LS +VD +
Sbjct: 431 -----LLVPASDLINKDL-VKNNVSFNAKDIQIPVYDTFDGSDLRVLSG-SISERIVDCI 483
Query: 101 LIMSVN-P-------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG-GVG 145
+ + V G GG S + + DG GV
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN-----------------KDGTGVR 526
Query: 146 PKNAYKVIEAGANALVAGSAV-FGAK 170
VI AG L +G K
Sbjct: 527 ------VIVAG--TLDINPDDDYGFK 544
Score = 30.0 bits (67), Expect = 0.50
Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 36/137 (26%)
Query: 3 GRFVPNITIGPLVVDALRPVTDLPLD--VHLMIVEPEQRVPDFIKAGADI--VSVHCEQS 58
G+F +G V + P D ++L + E E +++ G DI ++ Q
Sbjct: 62 GKF-----LG-YVSSLVEPSKVGQFDQVLNLCLTEFEN---CYLE-GNDIHALAAKLLQE 111
Query: 59 STIHLHRTLNQIKDLGAKAGVVLN---PATSLSAIECVLDVVDLVLIMSVNPG------- 108
+ L +T IK+ A ++ S SA L +V G
Sbjct: 112 NDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSA-----------LFRAVGEGNAQLVAI 159
Query: 109 FGGQSFIESQVKKISDL 125
FGGQ + +++ DL
Sbjct: 160 FGGQGNTDDYFEELRDL 176
Score = 30.0 bits (67), Expect = 0.52
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 30/101 (29%)
Query: 11 IGPLVVDALR-----PVTDLPLDVHLMIVEPEQRVP-----------DFIKAGADIVSVH 54
IG +R P T LP + +E + VP + ++ + + H
Sbjct: 306 IG------VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 55 CEQSSTIHLHRTL-NQIKDLGAKAGVVLNPATSLSAIECVL 94
+ + +L N GAK VV P SL + L
Sbjct: 360 LPAGKQVEI--SLVN-----GAKNLVVSGPPQSLYGLNLTL 393
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 38.3 bits (90), Expect = 5e-04
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
GG+ NA +V++ G + + SAV GA+D +A + ++
Sbjct: 169 GGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELR 207
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 36.8 bits (85), Expect = 0.002
Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 19/182 (10%)
Query: 12 GPLVVDALRPVTDLPL---------DVHLMIVEPEQRVPDFIKAGADIVSVHC--EQSST 60
+ A++ DLP+ + I + V + I++ +++++ +Q
Sbjct: 44 TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPK 103
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
L ++ I+ ++ + AT A D + Q + Q
Sbjct: 104 ETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQND 163
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG----AKDYAEA 175
L+ + I +G V P +V++ G + V G A+ K + +
Sbjct: 164 -FQFLKDVLQSVDA-KVI-AEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKRFVQV 220
Query: 176 IK 177
++
Sbjct: 221 ME 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.003
Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 40/170 (23%)
Query: 11 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG------ADIVSVHCEQSSTIHLH 64
I + DA V + D + V D K+ I+ S T+ L
Sbjct: 21 ILSVFEDAF--VDNF--DC--------KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 65 RTLNQIKDLGAKAGV--VLNP-----ATSLSAIECVLDVVDLVLIMS-VNPGF-GGQSFI 115
TL ++ + V VL + + E + + + + + Q F
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 116 ESQV---KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 162
+ V + LR+ LE + +DG +G +G +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---------SGKTWVAL 168
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 36.2 bits (83), Expect = 0.003
Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 24/181 (13%)
Query: 12 GPLVVDALRPVTDLPL---------DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-I 61
G + R + +P+ + + I V +AGA I++V +
Sbjct: 57 GIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPV 116
Query: 62 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 121
+ L +I ++ + C D++ G + ++ +
Sbjct: 117 AVEALLARIHHHHLLTMADC--SSVDDGLACQRLGADII-----GTTMSGYTTPDTPEEP 169
Query: 122 ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG----AKDYAEAI 176
L + + G I +G P A + I GA A+ GSA+ Y +A+
Sbjct: 170 DLPLVKALHDAGC-RVI-AEGRYNSPALAAEAIRYGAWAVTVGSAITRLEHICGWYNDAL 227
Query: 177 K 177
K
Sbjct: 228 K 228
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 36.1 bits (84), Expect = 0.003
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
GG+ P V +AGA+ + S +F + + EA +
Sbjct: 171 GGMTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYS 209
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 36.0 bits (84), Expect = 0.003
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
GG+ NA VI+AGA+ + SA+ A+D A + +
Sbjct: 179 GGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFR 217
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 35.7 bits (83), Expect = 0.004
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
GG+ + V++AGA +V A+ A D A + ++
Sbjct: 198 GGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLR 236
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis,
orotidine 5'-phosphate decarboxylas (ompdecase),
structural genomics; 1.60A {Pyrococcus horikoshii} SCOP:
c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Length = 208
Score = 34.9 bits (81), Expect = 0.007
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 44 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIM 103
AGAD V VH ++ +K+LG VV + A+E + + D + +
Sbjct: 75 FGAGADYVIVHTFVGR-----DSVMAVKELGEIIMVVEM--SHPGALEFINPLTDRFIEV 127
Query: 104 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA--YKVIEAGANALV 161
+ G ++ ++I +R I G +G + ++AGA+ ++
Sbjct: 128 ANEIEPFGVIAPGTRPERIGYIRDRL---KEGIKILAPG-IGAQGGKAKDAVKAGADYII 183
Query: 162 AGSAVFGAKDYAEAIKGIKTS 182
G A++ A + EA K I
Sbjct: 184 VGRAIYNAPNPREAAKAIYDE 204
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 34.2 bits (79), Expect = 0.015
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKD------YAEAIKGIKTSKR 184
GG+ N ++ + G V ++ D Y I+ K K+
Sbjct: 151 GGINEDNLLEIKDFGFGGAVVLGDLWNKFDACLDQNYLAVIEHFKKLKK 199
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal
phosphate, structural genomi NPPSFA; 2.30A
{Methanocaldococcus jannaschii}
Length = 330
Score = 34.0 bits (77), Expect = 0.019
Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 5/118 (4%)
Query: 65 RTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 124
L ++ D + V + + L + N + + + +
Sbjct: 171 AQLQRMTDEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYE 230
Query: 125 LRRMCLEKGVNPWIE-VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
+ + G P + GGV P +A +++ G++ + GS +F +++ A AI
Sbjct: 231 VLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIV 288
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 33.9 bits (77), Expect = 0.021
Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 32/185 (17%)
Query: 12 GPLVVDALRPVTDLPL---------DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 62
G + +RP +P+ + I Q V +AGADI++ +
Sbjct: 57 GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDA----SFR 112
Query: 63 LH-----RTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 117
L +I+ G A + +T I C ++ + G +
Sbjct: 113 SRPVDIDSLLTRIRLHGLLAMA--DCSTVNEGISCHQKGIEFI-------GTTLSGYTGP 163
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG----AKDY 172
DL + + +G P A IE GA A+ GSA+ + +
Sbjct: 164 ITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIEHICQWF 223
Query: 173 AEAIK 177
+ A+K
Sbjct: 224 SHAVK 228
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel,
unusual catalysis, disease mutati glycosyltransferase,
lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo
sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A*
3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A*
3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A*
3l0n_A* ...
Length = 260
Score = 33.8 bits (77), Expect = 0.024
Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 14/160 (8%)
Query: 27 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 86
D+ + + + I + AD+V+ H S + + ++++G
Sbjct: 96 ADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGV-----VKGLQEVGLPLHRGCLLIAE 150
Query: 87 LSAIECVL--DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG-- 142
+S+ + D + M+ S + + L GV D
Sbjct: 151 MSSTGSLATGDYTRAAVRMAEE-HSEFVVGFISGSRVSMKPEFLHLTPGVQLEAGGDNLG 209
Query: 143 --GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
P+ + + G++ ++ G + A D EA + +
Sbjct: 210 QQYNSPQEV--IGKRGSDIIIVGRGIISAADRLEAAEMYR 247
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 33.4 bits (76), Expect = 0.027
Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 23/183 (12%)
Query: 12 GPLVVDALRPVTDLPL---------DVHLMIVEPEQRVPDFIKAGADIVSVHC---EQSS 59
+ ++ +TDLP+ I V ++++ C ++
Sbjct: 57 SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHD 116
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQV 119
+ + + Q+K+ ++ + +T + +D V G + +
Sbjct: 117 GLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLS----GYTPYSRQEA 172
Query: 120 KKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFG----AKDYAE 174
L + G+ I +G + P+ A K+ + G +V G A+ A+ + E
Sbjct: 173 GPDVALIEALCKAGI-AVI-AEGKIHSPEEAKKINDLGVAGIVVGGAITRPKEIAERFIE 230
Query: 175 AIK 177
A+K
Sbjct: 231 ALK 233
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 33.5 bits (76), Expect = 0.034
Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 14/143 (9%)
Query: 44 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL--DVVDLVL 101
I + AD+V+ H S + + ++++G +S+ + D +
Sbjct: 165 IASWADLVNAHVVPGSGV-----VKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAV 219
Query: 102 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG----VGPKNAYKVIEAGA 157
M+ FI S + + L GV D P+ + + G+
Sbjct: 220 RMAEEHSEFVVGFI-SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEV--IGKRGS 276
Query: 158 NALVAGSAVFGAKDYAEAIKGIK 180
+ ++ G + A D EA + +
Sbjct: 277 DIIIVGRGIISAADRLEAAEMYR 299
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural
genomics, PSI, protein structure initiative; 1.70A
{Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Length = 256
Score = 32.1 bits (72), Expect = 0.091
Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 24/182 (13%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV---------EPEQRVPD---FIKAGA 48
+T V+ ++R +P+ + E + D + G
Sbjct: 28 CAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGF 87
Query: 49 D-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP 107
+V+ + + + R + G T A + + + + ++
Sbjct: 88 PGLVTGVLDVDGNVDMPRMEKIMAAAGPL------AVTFHRAFDMCANPLYTLNNLA-EL 140
Query: 108 GFGG---QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS 164
G ++ +S + + + + GV +N + ++AG + + +
Sbjct: 141 GIARVLTSGQKSDALQGLSKIMELIAHRDAPIIM-AGAGVRAENLHHFLDAGVLEVHSSA 199
Query: 165 AV 166
Sbjct: 200 GA 201
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 32.0 bits (72), Expect = 0.098
Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 8/160 (5%)
Query: 27 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 86
D+ + I ADI + H I L Q + K L
Sbjct: 95 ADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIV--SGLKQAAEEVTKEPRGLLMLAE 152
Query: 87 LSAIE--CVLDVVDLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMCLEKGVNPWIEVDG 142
LS + + ++ + FI + + + GV + D
Sbjct: 153 LSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDA 212
Query: 143 -GVGPKNAYKVIEAGANALVAGSAVFG-AKDYAEAIKGIK 180
G + V+ G++ ++ G +F +D + +
Sbjct: 213 LGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYR 252
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 31.0 bits (70), Expect = 0.16
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 21/144 (14%)
Query: 33 IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 92
+++PEQ V + G ++ S I G + +A+E
Sbjct: 67 VLKPEQ-VDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPG-----CATATEAFTALEA 120
Query: 93 VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 152
+ + FG Q + SD+ + GGV P+N +
Sbjct: 121 GAQALKIFPS----SAFGPQYIKALKAVLPSDIAVFAV-----------GGVTPENLAQW 165
Query: 153 IEAGANALVAGSAVFGAKDYAEAI 176
I+AG GS ++ A E
Sbjct: 166 IDAGCAGAGLGSDLYRAGQSVERT 189
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 30.9 bits (70), Expect = 0.19
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 132 KGVNPWIEV--DGGVGPKNAYKVIEAGANALVAGSAVFG---------AKDYAEAIKGIK 180
KG P ++ GGV N + +AG A+ GSA+ AK + E I+G
Sbjct: 145 KGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGCT 204
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum
cofactor, structural genomics, center for structural
genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm
1728}
Length = 136
Score = 30.3 bits (68), Expect = 0.19
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 129 CLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
+EK NP + G ++ GANALV G+ + +
Sbjct: 52 LIEKYSNPALNATAARGVFMLKSALDHGANALVLSE--IGSPGFNFIKNKMD 101
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG,
lyase, PSI-2, protein structure initiative; HET: MSE;
1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Length = 275
Score = 30.1 bits (67), Expect = 0.37
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 11/122 (9%)
Query: 74 GAKAGVVLNPATSLSAIECVLDVVDL--VLIMSVNPGFGGQSFI----ESQVKKISDLRR 127
K G V +SA +V + + + + G + + ++ + +
Sbjct: 145 TGKVGYVNISTGPISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAK 204
Query: 128 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 187
C E+G +E GG+ +N ++ AL A Y+ I + + +A
Sbjct: 205 ACAEEGF--ALEPTGGIDKENFETIVRI---ALEANVEQVIPHVYSSIIDKETGNTKVEA 259
Query: 188 VA 189
V
Sbjct: 260 VR 261
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 29.8 bits (67), Expect = 0.38
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 174
GG+ P N + G+ + K
Sbjct: 181 GGITPSNIDNYLAIPQVLACGGTWMVDKKLVTN 213
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 29.4 bits (66), Expect = 0.51
Identities = 7/33 (21%), Positives = 9/33 (27%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 174
GG+G N + GS K
Sbjct: 164 GGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQS 196
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 29.0 bits (65), Expect = 0.66
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 174
GG+ P N + + + GS + A
Sbjct: 163 GGISPANYRDYLALKSVLCIGGSWLVPADALEA 195
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET:
U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Length = 239
Score = 29.1 bits (66), Expect = 0.66
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 146 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
P A E G++A+V G ++ A+D +A K ++
Sbjct: 200 PAIA---REKGSSAIVVGRSITKAEDPVKAYKAVRLE 233
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural
genomics, PSI, protein structure initiative; 2.30A
{Streptococcus agalactiae}
Length = 224
Score = 29.0 bits (64), Expect = 0.80
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 15/132 (11%)
Query: 43 FIKAGAD-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV-DLV 100
++ +D +V ++ I + P A + +
Sbjct: 85 AVELESDALVLGILTSNNHIDTEAIEQLLPATQGL------PLVFHMAFDVIPKSDQKKS 138
Query: 101 LIMSVNPGF-----GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA 155
+ V GF G S E ++ I ++ + I V GGV +N + +
Sbjct: 139 IDQLVALGFTRILLHGSSNGEPIIENIKHIKALVEYANNRIEIMVGGGVTAENYQYICQE 198
Query: 156 -GANALVAGSAV 166
G G+ +
Sbjct: 199 TGVKQ-AHGTRI 209
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 28.7 bits (64), Expect = 0.91
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 174
GG+ N + + GS + +K E
Sbjct: 166 GGISKDNYKEYLGLPNVICAGGSWLTESKLLIE 198
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 28.3 bits (63), Expect = 1.4
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 132 KGVNPWIEV--DGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEA 175
V P + GG+ ++ V GS + +
Sbjct: 146 AEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLL-QGNLEAV 190
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 28.3 bits (63), Expect = 1.6
Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 20/150 (13%)
Query: 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK--------DLGAKAGVVLNPATSLSA 89
+ P IKAGAD++ + S H++ + D+ AG V + T+L
Sbjct: 169 EIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTTALHM 228
Query: 90 IECVLDVVDLVLIMSVNPG-----FGGQSFIESQVKKISDLRRMCLEKGVNPWIEV--DG 142
+ + I+ G + + + + ++ RR L++ ++ + DG
Sbjct: 229 MRTGAVGI----IVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADG 284
Query: 143 GVG-PKNAYKVIEAGANALVAGSAVFGAKD 171
+ + K I GA+A+V GS + A++
Sbjct: 285 SIENSGDVVKAIACGADAVVLGSPLARAEE 314
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 27.9 bits (62), Expect = 1.7
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 142 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 174
GGV P N + V + + +
Sbjct: 173 GGVNPANVRNYMALPNVMCVGTTWMLDSSWIKN 205
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer,
structural genomics, PSI-2, protein structure
initiative; 1.71A {Bifidobacterium adolescentis
ATCC15703}
Length = 282
Score = 28.0 bits (63), Expect = 1.9
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 153 IEAGANALVA-GSAVFGAKDYAEA 175
I G+ +V G+A+FG + + E
Sbjct: 254 IAEGST-IVRVGTAIFGERAFIEG 276
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural
genomics, protein structure initiative, PSI; 2.90A
{Pseudomonas aeruginosa} SCOP: c.1.31.1
Length = 265
Score = 27.6 bits (62), Expect = 2.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
VD GVG +A +E G A++ +A+ AKD AEA+K
Sbjct: 192 VDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMK 233
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics,
PSI-biology, protei structure initiative; HET: MES;
1.47A {Escherichia coli} PDB: 1w8g_A*
Length = 245
Score = 27.1 bits (61), Expect = 3.2
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 153 IEAGANALVA-GSAVFGAKDYA 173
I AG+ +VA G+A+FGA+DY+
Sbjct: 213 IAAGST-MVAIGTAIFGARDYS 233
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA
replication, RTH, RAD27, DNA repair; 2.00A
{Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2
PDB: 1a77_A
Length = 326
Score = 27.1 bits (60), Expect = 3.2
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 14/38 (36%)
Query: 123 SDLRRMC-------LEKGVNPWIEVDGGVGPKNAYKVI 153
DL + GV G+G K AY+++
Sbjct: 212 DDLIDIAIFMGTDYNPGGVK-------GIGFKRAYELV 242
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 27.2 bits (61), Expect = 3.3
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
VD G+G PK+A +E GA+ ++ +AV GA D A A+K
Sbjct: 183 VDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMK 224
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif,
metal-binding site, polymorphism, metal binding protein;
2.50A {Homo sapiens}
Length = 287
Score = 27.1 bits (59), Expect = 3.4
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 12/123 (9%)
Query: 43 FIKAGAD-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 101
GAD +V + I ++ + P T A + V D + L
Sbjct: 120 AKLYGADGLVFGALTEDGHIDKELCMSLMAICRPL------PVTFHRAFDMVHDPMA-AL 172
Query: 102 IMSVNPGFGG---QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGA 157
+ GF S ++ + ++R+ + + GG+ +N +++E +GA
Sbjct: 173 ETLLTLGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGA 232
Query: 158 NAL 160
Sbjct: 233 TEF 235
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 26.8 bits (60), Expect = 3.8
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
VD G+G P +A +V+E G +A++ +A+ A+D AEA +
Sbjct: 183 VDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFR 224
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Length = 540
Score = 27.1 bits (60), Expect = 4.4
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 142 GGVGPKNAYKVI--------EAGANALVAGSAVFGAKDYAEAIKGIKT 181
GG+ P N +V+ + + + S + + D A++ K ++
Sbjct: 180 GGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRG 227
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1
d.17.6.4 PDB: 2cx1_A* 1zs7_A
Length = 187
Score = 26.4 bits (58), Expect = 4.6
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 136 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 190
+ VD G A + GA+ ++ G + + V V
Sbjct: 93 GVVLVDKG-----AAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMV 142
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 26.9 bits (60), Expect = 4.9
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 6 VPNITI-----GPL-VVDALRPVTDLPLDVH 30
V NI I GP+ +AL+P + L +H
Sbjct: 200 VVNIGIGGSDLGPVMATEALKPFSQRDLSLH 230
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529,
structural genomics, NEW YORK S genomics research
consortium; 2.19A {Lactobacillus acidophilus}
Length = 259
Score = 26.4 bits (59), Expect = 5.0
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 146 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
PK A E G++A+V G + A D A + IK
Sbjct: 202 PKMA---KEWGSSAIVVGRPITLASDPKAAYEAIKKE 235
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics,
infectious diseases; 1.77A {Vibrio cholerae o1 biovar el
tor} PDB: 3uwq_A*
Length = 255
Score = 26.4 bits (59), Expect = 5.4
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 146 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
P A I +G++ LV G + A ++ I +S
Sbjct: 220 PAQA---IASGSDYLVIGRPITQAAHPEVVLEEINSS 253
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis,
5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis;
2.25A {Mycobacterium tuberculosis}
Length = 549
Score = 26.8 bits (60), Expect = 5.5
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 6/31 (19%)
Query: 6 VPNITI-----GP-LVVDALRPVTDLPLDVH 30
V NI I GP +V ALR D +
Sbjct: 146 VVNIGIGGSDLGPVMVYQALRHYADAGISAR 176
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 26.5 bits (59), Expect = 5.5
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 65 RTLNQIKDLGAKAG---VVLNPATSLSAIECV 93
R+L ++ +L A+AG +P + +S +E
Sbjct: 299 RSLAELGELAAQAGLAVRAAHPISYVSIVEMT 330
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel,
protein-inhibitor complex, homodimer, lyase; HET: BMQ;
2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A*
1l2u_A
Length = 245
Score = 26.4 bits (59), Expect = 6.1
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 146 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
P+ A + AG + +V G V + D A+ +K I S
Sbjct: 207 PEQA---LSAGVDYMVIGRPVTQSVDPAQTLKAINAS 240
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 26.7 bits (59), Expect = 6.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 150 YKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
+++I GA V G A AK + A+ GI
Sbjct: 623 FEMINNGAFIYVCGDAKGMAKGVSTALVGI 652
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 26.1 bits (58), Expect = 6.4
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 142 GGVGPKNA-YKVIEAGANALVAGSAVFGAKDYAEAIK 177
G+ + + G ++ SA AKD I
Sbjct: 180 AGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIV 216
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center
for structural genomics of infec diseases (csgid),
TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Length = 303
Score = 26.5 bits (59), Expect = 6.4
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 146 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
A E ++ +V G ++ ++ + I
Sbjct: 216 LAMA---RENLSDYIVVGRPIYKNENPRAVCEKILNK 249
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 25.8 bits (57), Expect = 6.5
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 146 PKNAYKVIEAGANALVAGSAVFGAKDYAEAI----KGIKTSKRPQAVAV 190
P+ A + G+ +F DY A+ + + PQ AV
Sbjct: 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAV 66
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines,
nucleosides, nucleotides, lyase; 2.00A {Coxiella
burnetii}
Length = 239
Score = 26.4 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 146 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
P+ A I+AG++ LV G + + D +A++ I
Sbjct: 202 PRAA---IQAGSDYLVIGRPITQSTDPLKALEAIDKD 235
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 26.4 bits (59), Expect = 6.8
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 109 FGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 140
G + S + + + M C EKG++ IEV
Sbjct: 290 LGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIEV 324
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, NPPSFA, national project on structural and
functional analyses; HET: C5P; 2.20A {Geobacillus
kaustophilus} PDB: 2yyt_A*
Length = 246
Score = 26.0 bits (58), Expect = 6.9
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 146 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
P+ A G++ +V G ++ A D ++
Sbjct: 201 PRKA---RALGSDYIVIGRSLTRAADPLRTYARLQHE 234
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 26.4 bits (59), Expect = 7.3
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 108 GFGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 140
G + S + I + + M ++ + P I++
Sbjct: 282 HLGNRKVYGSLIGGIKETQEMVDFSIKHNIYPEIDL 317
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 26.0 bits (58), Expect = 7.6
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 109 FGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 140
++ S + I + + M C E G+ IE+
Sbjct: 304 MKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEM 338
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 26.0 bits (56), Expect = 7.9
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 138 IEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184
+ V G V + + +++GA+ + A+ D+ A+ I +
Sbjct: 230 LFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ-PDWRSALAEIAGRRP 276
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 26.1 bits (58), Expect = 7.9
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 142 GGVGPKNA-YKVIEAGANALVAGSAVFGAKDYAEAIKGI 179
G+ K IE G ++ S V AKD +AI +
Sbjct: 183 AGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDL 221
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 26.2 bits (58), Expect = 8.1
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 147 KNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
YK ++ + + + Y +A
Sbjct: 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATS 278
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication,
transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1
c.120.1.2 PDB: 1mc8_A
Length = 340
Score = 26.0 bits (57), Expect = 8.9
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 14/37 (37%)
Query: 124 DLRRMC-------LEKGVNPWIEVDGGVGPKNAYKVI 153
L + G+ G+G K A +++
Sbjct: 225 KLIELAILVGTDYNPGGIK-------GIGLKKALEIV 254
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 26.1 bits (58), Expect = 9.1
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 6 VPNITI-----GP-LVVDALRPVTDLPLDVH 30
+ NI I GP +V +AL+P + L
Sbjct: 199 IVNIGIGGSDLGPVMVTEALKPFSKRDLHCF 229
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 26.0 bits (58), Expect = 9.2
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 109 FGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 140
G + S + + + + M + + IEV
Sbjct: 297 AGRKIVAGSGIGGMKETQEMIDFAAKHNITADIEV 331
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 9.4
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 9/36 (25%)
Query: 147 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
K A K ++A +L ++ A D A A+ IK +
Sbjct: 19 KQALKKLQA---SL----KLY-ADDSAPAL-AIKAT 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,015,386
Number of extensions: 187920
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 662
Number of HSP's successfully gapped: 102
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)