RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029661
(190 letters)
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 200 bits (509), Expect = 4e-66
Identities = 169/186 (90%), Positives = 179/186 (96%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSST
Sbjct: 45 MDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSST 104
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
IHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVK
Sbjct: 105 IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK 164
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KISDLR++C E+G+NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIK
Sbjct: 165 KISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK 224
Query: 181 TSKRPQ 186
TSKRP+
Sbjct: 225 TSKRPE 230
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 183 bits (464), Expect = 3e-59
Identities = 127/185 (68%), Positives = 153/185 (82%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDGRFVPNITIGPL+VDA+RP+T LDVHLMIVEPE+ V DF KAGADI+SVH E +++
Sbjct: 37 MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNAS 96
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
HLHRTL QI++LG KAG VLNP+T L +E VL V DL+LIMSVNPGFGGQSFI +
Sbjct: 97 PHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLP 156
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
KI LR+MC E+G++PWIEVDGG+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++
Sbjct: 157 KIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR 216
Query: 181 TSKRP 185
SKRP
Sbjct: 217 NSKRP 221
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 171 bits (434), Expect = 6e-55
Identities = 89/182 (48%), Positives = 124/182 (68%), Gaps = 2/182 (1%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG+FVPNI+ G VV ++R + L D HLM+V+PE+ V F +AGADI+++H E T
Sbjct: 36 MDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTES--T 93
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
H+H L +IK G KAGVV+NP T +A+E +LD+VD VLIM+VNPGFGGQ+FI ++
Sbjct: 94 RHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLE 153
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
K++ + + EKG++ IEVDGGV K EAGAN VAGS +F A D ++ ++
Sbjct: 154 KVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR 213
Query: 181 TS 182
T+
Sbjct: 214 TA 215
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 134 bits (338), Expect = 2e-40
Identities = 74/185 (40%), Positives = 101/185 (54%), Gaps = 8/185 (4%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 60
MDG FVPN+TIG V+ +LR T LD HLM+ P V KAGA + H E S
Sbjct: 36 MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIE-VSR 94
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAI---ECVLDVVDLVLIMSVNPGFGGQSFIES 117
+ + IK G + GV L P T + + + V+LVL+M+V PGFGGQ F+
Sbjct: 95 DNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPE 154
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
++K+ LR+ + IEVDGG+GP AGAN +VAGS++FGA + E I
Sbjct: 155 MMEKVRALRKKYP----SLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVIS 210
Query: 178 GIKTS 182
++ S
Sbjct: 211 ALRKS 215
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 128 bits (323), Expect = 4e-38
Identities = 60/185 (32%), Positives = 96/185 (51%), Gaps = 7/185 (3%)
Query: 1 MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 59
MD FVPN++ GP V++ L+ + DVHLM+ PE+ VP +
Sbjct: 37 MDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFHFEALNED 96
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIES 117
T + +I+D G+ + P T + + +LD +++ VL+M+V PGFGGQSF+
Sbjct: 97 TERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHD 156
Query: 118 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 177
+ K+S LR+ N I+VDGG+ + GAN +VAG+++F A+D I
Sbjct: 157 MMGKVSFLRKKYK----NLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVID 212
Query: 178 GIKTS 182
++ S
Sbjct: 213 TMRVS 217
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 118 bits (297), Expect = 2e-34
Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 11/186 (5%)
Query: 1 MDGRFVPNITIGPLVVDALRPVTD--LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 58
++ + + G V L+ + + L + + +A AD V+V C +
Sbjct: 30 IEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICC-A 88
Query: 59 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIE 116
L+ K+ + L + + D + +V S + G ++ E
Sbjct: 89 DINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGE 148
Query: 117 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 176
+ + I L + + V GG+ ++ + +AG ++ A EA
Sbjct: 149 ADITAIKRLSD------MGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAA 202
Query: 177 KGIKTS 182
+ K S
Sbjct: 203 RQFKRS 208
>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 206
Score = 49.2 bits (116), Expect = 3e-08
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 7/174 (4%)
Query: 12 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK 71
G ++ L+ T + + L + +P+ + A V +H + +
Sbjct: 39 GVDIIRRLKEETGVEIIADLKL----ADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVM 94
Query: 72 DLGAKAGVVLNPAT-SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL 130
+ +++ A+E + + D + ++ G ++ ++I +R
Sbjct: 95 AVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLK 154
Query: 131 EKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 184
E + G A ++AGA+ ++ G A++ A + EA K I R
Sbjct: 155 EG--IKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 49.1 bits (116), Expect = 5e-08
Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 8/155 (5%)
Query: 28 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 87
I V ++++ C + + I+ + K L A
Sbjct: 79 PQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS 138
Query: 88 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P 146
+ E ++ + + G + + L + G+ + +G + P
Sbjct: 139 TFDEGLVAHQAGIDFVGTT-LSGYTPYSRQEAGPDVALIEALCKAGI--AVIAEGKIHSP 195
Query: 147 KNAYKVIEAGANALVAGSAVFG----AKDYAEAIK 177
+ A K+ + G +V G A+ A+ + EA+K
Sbjct: 196 EEAKKINDLGVAGIVVGGAITRPKEIAERFIEALK 230
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 43.0 bits (100), Expect = 5e-06
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 4/179 (2%)
Query: 5 FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLH 64
++ +G + PV DV + IK V S
Sbjct: 42 APNHLELGLVSQSVDIPVYAQGADVEAGGAHTAHVSLENIKEA-GGSGVILNHSEAPLKL 100
Query: 65 RTLNQIKDLGAKAG--VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 122
L ++ G VV+ +++ V + G++ + + I
Sbjct: 101 NDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAI 160
Query: 123 SDLRRMCLEKGVNPWIEVDGGVGPKN-AYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
+ + + G+ + + G ++ SA AKD I +
Sbjct: 161 VETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELA 219
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 42.9 bits (100), Expect = 6e-06
Identities = 26/182 (14%), Positives = 63/182 (34%), Gaps = 19/182 (10%)
Query: 12 GPLVVDALRPVTDLPL---------DVHLMIVEPEQRVPDFIKAGADIVSVHCEQ--SST 60
+ A++ DLP+ + I + V + I++ +++++
Sbjct: 44 TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPK 103
Query: 61 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 120
L ++ I+ ++ + AT A D I + G+ + + +
Sbjct: 104 ETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDY--IGTTLHGYTSYTQGQLLYQ 161
Query: 121 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV----FGAKDYAEA 175
+ L+ I +G V P +V++ G + V G A+ K + +
Sbjct: 162 NDFQFLKDVLQSVDAKVI-AEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKRFVQV 220
Query: 176 IK 177
++
Sbjct: 221 ME 222
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 42.1 bits (98), Expect = 9e-06
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 89 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 148
A+E D + SV P + ++ + + P + GG+ N
Sbjct: 112 ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV----KIPVV-AIGGINKDN 166
Query: 149 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
A +V++ G + + SAV GA+D +A + ++
Sbjct: 167 AREVLKTGVDGIAVISAVMGAEDVRKATEELR 198
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
[TaxId: 2336]}
Length = 202
Score = 41.1 bits (96), Expect = 2e-05
Identities = 31/195 (15%), Positives = 64/195 (32%), Gaps = 23/195 (11%)
Query: 4 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ----SS 59
+ V + V+ + + + ++E VPD ++ + + +
Sbjct: 10 KIVAVLRANS--VEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAG 67
Query: 60 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-------GFGGQ 112
T+ + + GA+ V + +S V + +M+ G
Sbjct: 68 TVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTIL 127
Query: 113 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG---- 168
+V ++ M ++ GGV N + +AG A+ GSA+
Sbjct: 128 KLFPGEVVGPQFVKAMKGPFPNVKFVPT-GGVNLDNVCEWFKAGVLAVGVGSALVKGTPD 186
Query: 169 -----AKDYAEAIKG 178
AK + E I+G
Sbjct: 187 EVREKAKAFVEKIRG 201
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 212
Score = 40.3 bits (93), Expect = 5e-05
Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 11/176 (6%)
Query: 12 GPLVVDALRPVTDLPLDVHLMIVE----PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTL 67
G ++ R + + + E+ KAGAD + VH R
Sbjct: 42 GMDIIAEFRKRFGCRIIADFAVADIPETNEKICRATFKAGADAIIVHG--FPGADSVRAC 99
Query: 68 NQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 127
+ + + +L + A + D + M V+ G ++ +++S LR
Sbjct: 100 LNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLRE 159
Query: 128 MCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
+ + GVG + A+A++ G +++ A + A A GI S
Sbjct: 160 II----GQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIES 211
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 226
Score = 39.5 bits (91), Expect = 8e-05
Identities = 26/132 (19%), Positives = 58/132 (43%)
Query: 49 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 108
D+ ++ IH+ + K++ A G ++ ++ + E D + + P
Sbjct: 85 DVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPI 144
Query: 109 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 168
+ ++ +++ + L +G++ I GG+ NA VI+AGA+ + SA+
Sbjct: 145 YPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQ 204
Query: 169 AKDYAEAIKGIK 180
A+D A + +
Sbjct: 205 AEDPESAARKFR 216
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 36.9 bits (84), Expect = 7e-04
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 98 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-AYKVIEAG 156
D V + G +++ + I++ + + + G+ K IE G
Sbjct: 138 DYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELG 197
Query: 157 ANALVAGSAVFGAKDYAEAIKGIKTS 182
++ S V AKD +AI + +
Sbjct: 198 TVGVLLASGVTKAKDPEKAIWDLVSG 223
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Length = 237
Score = 32.9 bits (74), Expect = 0.014
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 135 NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
+ V E G++A+V G ++ A+D +A K ++
Sbjct: 186 MSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLE 233
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 31.8 bits (71), Expect = 0.035
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 134 VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 182
E + + AG + +V G V + D A+ +K I S
Sbjct: 181 RPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINAS 229
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 31.5 bits (71), Expect = 0.047
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 4/129 (3%)
Query: 42 DFIKAGADIVSVHCEQSSTI-HLHRTLNQIKDLGAKAGVVLNP--ATSLSAIECVLDVVD 98
++AGA + V S ++R ++ I L G V+ L + + +VD
Sbjct: 96 TVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVD 155
Query: 99 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA 157
+ ++ R L K + ++ GG+ +A + AGA
Sbjct: 156 SSRRAGADIVKTSTGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGA 215
Query: 158 NALVAGSAV 166
+ + SAV
Sbjct: 216 DIIGTSSAV 224
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 30.3 bits (68), Expect = 0.092
Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 14/183 (7%)
Query: 3 GRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ---SS 59
R +P ITI + + P+ D + +E R +KA + E +
Sbjct: 17 ARILPVITIAR--EEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAG 74
Query: 60 TIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIE----CVLDVVDLVLIM-SVNPGF-GG 111
T+ ++ GA+ V + + ++ + + IM G+
Sbjct: 75 TVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRF 134
Query: 112 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 171
+ F ++ ++ G + GGV P N + V + + +
Sbjct: 135 KLFPAEISGGVAAIKAFGGPFGDIRFCPT-GGVNPANVRNYMALPNVMCVGTTWMLDSSW 193
Query: 172 YAE 174
Sbjct: 194 IKN 196
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 30.5 bits (69), Expect = 0.10
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
GGV P +A ++ GA+ + GS +F +++ YA AI
Sbjct: 194 AAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIV 235
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 30.2 bits (68), Expect = 0.12
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
VD G+G PK+A +E GA+ ++ +AV GA D A A+K
Sbjct: 182 VDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMK 223
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
influenzae [TaxId: 727]}
Length = 212
Score = 29.9 bits (67), Expect = 0.15
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 1/61 (1%)
Query: 114 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYA 173
F + ++ + + GG+G N + GS K
Sbjct: 134 FPAEASGGVKMIKALLGPYAQLQIMPT-GGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQ 192
Query: 174 E 174
Sbjct: 193 S 193
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 29.3 bits (65), Expect = 0.19
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 151 KVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
+ ++ AN V G ++ +++ E IK IK
Sbjct: 168 EEMKGIANFAVLGREIYLSENPREKIKRIK 197
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 29.2 bits (65), Expect = 0.20
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 116 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 170
+++ D+ R + N +EV GG+ +N + + +
Sbjct: 106 NLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEV 160
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 29.4 bits (65), Expect = 0.25
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 8/144 (5%)
Query: 43 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-----AIECVLDVV 97
I ADI + H + L Q + K L LS +
Sbjct: 111 RIAEWADITNAHGV--VGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGEYTKGT 168
Query: 98 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGA 157
+ + G + + + + G + V+ G+
Sbjct: 169 VDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGS 228
Query: 158 NALVAGSAVFG-AKDYAEAIKGIK 180
+ ++ G +F +D + +
Sbjct: 229 DIIIVGRGLFAKGRDAKVEGERYR 252
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 26.9 bits (60), Expect = 0.34
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 143 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 183
G+ + K+ EAG + V A K+ IKGI +K
Sbjct: 17 GINANDVKKLEEAGFHT-VEAVAYAPKKELIN-IKGISEAK 55
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 28.9 bits (64), Expect = 0.39
Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 8/140 (5%)
Query: 38 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 97
+R +AGAD + + + + R + +I+ ++ + + D
Sbjct: 110 ERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAG 169
Query: 98 DLVLIM-----SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK 151
V+ + S+ QV I D + E G I DGG+ + K
Sbjct: 170 VDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGK--TIIADGGIKYSGDIVK 227
Query: 152 VIEAGANALVAGSAVFGAKD 171
+ AG NA++ GS G +
Sbjct: 228 ALAAGGNAVMLGSMFAGTDE 247
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 28.8 bits (63), Expect = 0.43
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 136 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 168
P I + G ++ ++ AGA+A+ G+A F
Sbjct: 243 PIIGMGGVANAQDVLEMYMAGASAVAVGTANFA 275
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 28.4 bits (63), Expect = 0.49
Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 14/146 (9%)
Query: 42 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 101
D I+A A V + T+ + L ++ + GA+ + L + +
Sbjct: 55 DAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPG 114
Query: 102 IMSVNPGFGGQS--------FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI 153
I +V+ G F + L+ + + GG+ P N +
Sbjct: 115 ISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPT-GGISPANYRDYL 173
Query: 154 EAGANALVAGSAVF-----GAKDYAE 174
+ + GS + A DY
Sbjct: 174 ALKSVLCIGGSWLVPADALEAGDYDR 199
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 28.4 bits (62), Expect = 0.49
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK 151
V+D + +++ GFGG ++++ G + A+
Sbjct: 200 LVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFL 259
Query: 152 VIEAGANALVAGSAVF 167
I AGA+ + G+A+
Sbjct: 260 HILAGASMVQVGTALH 275
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 28.0 bits (61), Expect = 0.60
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 108 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 167
G G + ++ ++ + R G P + G ++ + + +GA+ L SAV
Sbjct: 232 GVSGTAIRPIALRAVTTIARAL--PGF-PILATGGIDSAESGLQFLHSGASVLQVCSAVQ 288
Query: 168 --GAKDYAEAIKGIK 180
+ G+K
Sbjct: 289 NQDFTVIQDYCTGLK 303
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 28.0 bits (62), Expect = 0.72
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 140 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 177
VD GVG +A +E G A++ +A+ AKD AEA+K
Sbjct: 184 VDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMK 225
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 27.3 bits (59), Expect = 1.1
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 101 LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANA 159
+++ GFGG + ++++R I GG+ ++A++ + GA
Sbjct: 208 VVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATM 267
Query: 160 LVAGSAVF 167
L G+A+
Sbjct: 268 LQIGTALH 275
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine
synthase MetH, N-terminal domain {Thermotoga maritima
[TaxId: 2336]}
Length = 300
Score = 27.3 bits (59), Expect = 1.2
Identities = 4/24 (16%), Positives = 15/24 (62%)
Query: 42 DFIKAGADIVSVHCEQSSTIHLHR 65
+I++G+D++ + ++ + L +
Sbjct: 52 SYIESGSDVILTNTFGATRMKLRK 75
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 27.3 bits (60), Expect = 1.2
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 111 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-------AYKVIEAGANALVAG 163
G ++ + ++ + + GG K V+EAGA + G
Sbjct: 170 GADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVG 229
Query: 164 SAVFGAKDYAEAIKGIK 180
V+ +D + + +
Sbjct: 230 RNVWQRRDALKFARALA 246
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 64
Score = 25.4 bits (56), Expect = 1.4
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 143 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 183
G+ + K+ E+G + A KD E IKGI +K
Sbjct: 10 GITMADVKKLRESGLHT-AEAVAYAPRKDLLE-IKGISEAK 48
>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 361
Score = 26.4 bits (57), Expect = 2.2
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 42 DFIKAGADIVSVHCEQSSTIHLHR 65
+F++AG++++ +S L
Sbjct: 52 EFLRAGSNVMQTFTFYASEDKLEN 75
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae
[TaxId: 666]}
Length = 178
Score = 26.2 bits (57), Expect = 2.5
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 125 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANAL 160
L +M + V +E G + Y + +AG +AL
Sbjct: 43 LNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSAL 78
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 73
Score = 24.7 bits (54), Expect = 2.5
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 143 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI--KTSKR 184
GVGPK A ++ A L+A + + G + G+ + ++R
Sbjct: 17 GVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAER 60
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 25.8 bits (56), Expect = 3.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 140 VDGGVGPKNAYKVIEAGANALVAGSAVF----GAKDYAEAIKG 178
GG+ K A+ +V G+AV+ A A+KG
Sbjct: 186 YGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVKG 228
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 25.7 bits (55), Expect = 3.7
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 92 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG-----GVG- 145
+ ++ +S G G E+ LR + + + G GVG
Sbjct: 247 GIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGG 306
Query: 146 ---PKNAYKVIEAGANALVAGSAV 166
++A + I AGA+ + +A+
Sbjct: 307 VSSGQDALEKIRAGASLVQLYTAL 330
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 23.9 bits (52), Expect = 4.6
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 143 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI--KTSKR 184
GVGP+ A + A + + + GI + ++R
Sbjct: 16 GVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRGAER 59
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 24.9 bits (53), Expect = 8.1
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 142 GGV-GPKNAYKVIEAGANALVAGSAVF 167
GG+ +A + IEAGA+ S +
Sbjct: 349 GGIFSGLDALEKIEAGASVCQLYSCLV 375
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 24.7 bits (53), Expect = 8.6
Identities = 6/38 (15%), Positives = 19/38 (50%)
Query: 143 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 180
G+ K + NA++ G+++ A++ ++ ++
Sbjct: 210 GIKDPRELKDLRGKVNAVLVGTSIMKAENPRRFLEEMR 247
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 174
Score = 24.1 bits (52), Expect = 9.0
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 130 LEKGVNPWIEVDGGVGPKNAYKVIEAGANA 159
LE W++V G K A + + A
Sbjct: 142 LEAKKGKWVKVTGWRDRKAALEEVRACIAR 171
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 699,127
Number of extensions: 31812
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 59
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)