BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029662
MGQAFRRASGRITSSSSTTSSSSKTKNVVDRGPRVVPTDEKISRTGPLDGGDHREGNRPV
NTGNVLEERDPQYDAMLNQMLGRVKTKAGGKAEMGEAAVVERQTRPLPKLRNTTPVSSRY
EEKPSPPGTLNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCLSLPP
ESSNKERNYP

High Scoring Gene Products

Symbol, full name Information P value
AT3G21400 protein from Arabidopsis thaliana 1.5e-37

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029662
        (190 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2089463 - symbol:AT3G21400 "AT3G21400" species...   403  1.5e-37   1


>TAIR|locus:2089463 [details] [associations]
            symbol:AT3G21400 "AT3G21400" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] GO:GO:0005739 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AP001305 EMBL:BT005633 EMBL:AK119036
            IPI:IPI00523712 RefSeq:NP_188777.1 UniGene:At.38066 IntAct:Q9LIF6
            PaxDb:Q9LIF6 PRIDE:Q9LIF6 EnsemblPlants:AT3G21400.1 GeneID:821694
            KEGG:ath:AT3G21400 TAIR:At3g21400 eggNOG:NOG267257
            HOGENOM:HOG000005698 InParanoid:Q9LIF6 OMA:LNQMVGR PhylomeDB:Q9LIF6
            ProtClustDB:CLSN2685105 ArrayExpress:Q9LIF6 Genevestigator:Q9LIF6
            Uniprot:Q9LIF6
        Length = 188

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 94/192 (48%), Positives = 116/192 (60%)

Query:     1 MGQAFRRASGRIXXXXXXXXXXXXXXNVVDRGPRVVPTDE----KIS-RTGPLDGGDHRE 55
             MGQ  RRA G+I                +DR  R +PT+E    K S  T  +DG   + 
Sbjct:     1 MGQQLRRAVGKIKEVERSSPSRVS----IDR--RSLPTEELSAVKSSPSTAAVDGVSDK- 53

Query:    56 GNRPVNTGNVLEERDPQYDAMLNQMLGRVKTXXXXXXXXXXXXXXXRQTRPLPKLRNTTP 115
             G R  +  NVLEERDP+YD MLNQM+GR+K                   RPLPKLRNTTP
Sbjct:    54 GRR-TSEDNVLEERDPKYDTMLNQMVGRIKAKPGGKAEMGEASVVETSKRPLPKLRNTTP 112

Query:   116 VSSRYEEKPSPPGTLNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQC 175
              S+RYEE P P GTLNVAQ+R IMLL QGK+ DH+GP+   +IAEK+R+DV QVQ I Q 
Sbjct:   113 ESTRYEENPVPQGTLNVAQVRHIMLLFQGKSQDHHGPMGVNEIAEKYRIDVSQVQKITQF 172

Query:   176 LSLPPESSNKER 187
             LSLP E ++K++
Sbjct:   173 LSLPQEITDKQK 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.135   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      190       161   0.00074  107 3  11 23  0.42    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  526 (56 KB)
  Total size of DFA:  125 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  14.72u 0.09s 14.81t   Elapsed:  00:00:03
  Total cpu time:  14.72u 0.09s 14.81t   Elapsed:  00:00:04
  Start:  Sat May 11 06:22:24 2013   End:  Sat May 11 06:22:28 2013

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