BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029662
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18105|NOD_DROME Kinesin-like protein Nod OS=Drosophila melanogaster GN=nod PE=1
SV=1
Length = 666
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 8/127 (6%)
Query: 69 RDPQYDAMLNQMLGRVKTKAGGKAEMGEAAVVERQTRPLPKLRNTTPVSSRYEEKPSPPG 128
R Y A+ M R T+ G E + VV+ +T +P LR+T KP+P
Sbjct: 534 RSQNYGAIPKVMNLRRSTRLAGIREHATSVVVKNETDAIPHLRSTVQKKRTRNVKPAPKA 593
Query: 129 TLNVAQLRRIMLLHQGKADDHN-----GPLDAKQIA-EKFRLDVLQVQAILQCLSLPPES 182
+ + LL+ G GP A +A + RL + + Q SLP S
Sbjct: 594 WMANNTKCFLDLLNNGNVKQLQEIPGIGPKSAFSLALHRSRLGCF--ENLFQVKSLPIWS 651
Query: 183 SNKERNY 189
NK +
Sbjct: 652 GNKWERF 658
>sp|C5DFG5|BL1S1_LACTC Biogenesis of lysosome-related organelles complex 1 subunit BLS1
OS=Lachancea thermotolerans (strain ATCC 56472 / CBS
6340 / NRRL Y-8284) GN=BLS1 PE=3 SV=1
Length = 109
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 98 AVVERQTRPLPKLRNTTPVSSRYEEKPSPPGTLNVAQLRRIMLLHQGKADD 148
A++ER + K + T V+ +EE S +N QL+R++ LH + D
Sbjct: 8 ALLERALNKITKSQTNTNVAEAHEEIESNYAYINEKQLKRLVELHDTEFKD 58
>sp|P38650|DYHC1_RAT Cytoplasmic dynein 1 heavy chain 1 OS=Rattus norvegicus GN=Dync1h1
PE=1 SV=1
Length = 4644
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 39 DEKISRTGPLDGGDHREGNRPVNTGNVLEERDPQ-YDAMLNQMLGRVKTKAGGKA 92
D KI+RT LD + + GN L +D + YD +LN +L R + GG+
Sbjct: 3604 DRKITRTSFLDDAFRKNLESALRFGNPLLVQDVESYDPVLNPVLNREVRRTGGRV 3658
>sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1
SV=5
Length = 4646
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 39 DEKISRTGPLDGGDHREGNRPVNTGNVLEERDPQ-YDAMLNQMLGRVKTKAGGKA 92
D KI+RT LD + + GN L +D + YD +LN +L R + GG+
Sbjct: 3606 DRKITRTSFLDDAFRKNLESALRFGNPLLVQDVESYDPVLNPVLNREVRRTGGRV 3660
>sp|Q9JHU4|DYHC1_MOUSE Cytoplasmic dynein 1 heavy chain 1 OS=Mus musculus GN=Dync1h1 PE=1
SV=2
Length = 4644
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 39 DEKISRTGPLDGGDHREGNRPVNTGNVLEERDPQ-YDAMLNQMLGRVKTKAGGKA 92
D KI+RT LD + + GN L +D + YD +LN +L R + GG+
Sbjct: 3604 DRKITRTSFLDDAFRKNLESALRFGNPLLVQDVESYDPVLNPVLNREVRRTGGRV 3658
>sp|B1XHQ1|Y1983_SYNP2 UPF0234 protein SYNPCC7002_A1983 OS=Synechococcus sp. (strain ATCC
27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1983 PE=3 SV=1
Length = 163
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 111 RNTTPVSSRYEEKPSPPGTLNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQ 170
RN +P Y E S G ++R+++ L QG + D DAK+I + + D +VQ
Sbjct: 73 RNLSPKLFDYGEAESASG----GRVRQVITLRQGISKD-----DAKKITKMVKTDFKKVQ 123
Query: 171 AILQCLSLPPESSNKE 186
A +Q ++ S +K+
Sbjct: 124 ASIQGDAVRISSKSKD 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,708,950
Number of Sequences: 539616
Number of extensions: 3040527
Number of successful extensions: 6832
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6822
Number of HSP's gapped (non-prelim): 30
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)