Query 029662
Match_columns 190
No_of_seqs 16 out of 18
Neff 2.2
Searched_HMMs 13730
Date Tue Mar 26 18:25:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029662.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2281-2284//hhsearch_scop/029662hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hr3a1 a.4.5.28 (A:2-146) Pro 72.1 3.1 0.00023 19.5 4.9 47 125-176 27-73 (145)
2 d2d1ha1 a.4.5.50 (A:1-109) Hyp 71.7 2.4 0.00017 20.2 4.1 43 130-177 19-61 (109)
3 d1xd7a_ a.4.5.55 (A:) Hypothet 71.3 2.8 0.00021 19.8 4.4 28 150-177 16-43 (127)
4 d1dpua_ a.4.5.16 (A:) C-termin 68.4 2.6 0.00019 20.0 3.7 45 130-177 4-49 (69)
5 d1tw3a1 a.4.5.29 (A:14-98) Car 67.4 2.3 0.00017 20.3 3.2 29 149-177 31-59 (85)
6 d1hlva1 a.4.1.7 (A:1-66) DNA-b 61.1 5.2 0.00038 18.2 4.6 40 129-174 7-47 (66)
7 d1qzza1 a.4.5.29 (A:10-101) Ac 60.1 2.8 0.0002 19.8 2.6 28 150-177 38-65 (92)
8 d1rr7a_ a.4.1.14 (A:) Middle o 59.1 5.6 0.00041 18.0 4.3 46 123-176 43-90 (94)
9 d1j5ya1 a.4.5.1 (A:3-67) Putat 57.1 6.1 0.00044 17.8 4.1 42 132-177 6-47 (65)
10 d1r71a_ a.4.14.1 (A:) Transcri 57.0 3 0.00022 19.7 2.3 29 153-181 31-59 (114)
11 d1ku3a_ a.4.13.2 (A:) Sigma70 53.6 7 0.00051 17.5 4.4 39 134-174 12-50 (61)
12 d1vz0a1 a.4.14.1 (A:116-208) P 51.8 4 0.00029 18.9 2.3 29 153-181 20-48 (93)
13 d3ctaa1 a.4.5.28 (A:5-89) Ta10 50.5 7.9 0.00057 17.2 3.9 43 134-176 3-45 (85)
14 d1s3ja_ a.4.5.28 (A:) Putative 46.6 8.1 0.00059 17.1 3.2 41 130-176 33-73 (143)
15 d1ylfa1 a.4.5.55 (A:5-142) Hyp 45.2 7.2 0.00053 17.4 2.7 28 150-177 21-48 (138)
16 d2p7vb1 a.4.13.2 (B:546-613) S 44.7 9.7 0.00071 16.7 4.7 39 134-174 9-47 (68)
17 d2a61a1 a.4.5.28 (A:5-143) Tra 44.0 10 0.00073 16.6 4.5 41 130-176 28-68 (139)
18 d1fp2a1 a.4.5.29 (A:8-108) Iso 43.6 7.1 0.00052 17.4 2.5 28 149-176 41-71 (101)
19 d1ku9a_ a.4.5.36 (A:) DNA-bind 42.3 8.1 0.00059 17.1 2.6 42 130-176 24-65 (151)
20 d1mkma1 a.4.5.33 (A:1-75) Tran 39.6 12 0.00085 16.2 3.3 29 148-176 16-44 (75)
21 d2fxaa1 a.4.5.28 (A:6-167) Pro 38.9 12 0.00087 16.1 3.9 43 128-176 37-79 (162)
22 d1ttya_ a.4.13.2 (A:) Sigma70 36.9 13 0.00094 15.9 4.8 38 134-173 22-59 (87)
23 d1lj9a_ a.4.5.28 (A:) Transcri 35.7 14 0.00098 15.8 3.3 41 130-176 27-67 (144)
24 d1t1ea2 d.58.3.2 (A:12-190) Pr 33.6 15 0.0011 15.6 6.0 47 131-177 39-85 (179)
25 d1rp3a2 a.4.13.2 (A:164-234) S 31.9 16 0.0011 15.5 4.2 35 134-174 25-59 (71)
26 d2fbia1 a.4.5.28 (A:5-140) Pro 30.2 17 0.0012 15.3 3.8 41 130-176 28-68 (136)
27 d2fbha1 a.4.5.28 (A:8-144) Tra 27.9 18 0.0013 15.1 4.1 42 130-176 26-67 (137)
28 d1jgsa_ a.4.5.28 (A:) Multiple 27.1 19 0.0014 15.0 4.3 41 130-176 32-72 (138)
29 d1p4xa1 a.4.5.28 (A:1-125) Sta 25.4 20 0.0014 14.9 2.3 44 129-176 31-74 (125)
30 d1or7a1 a.4.13.2 (A:120-187) S 25.1 21 0.0015 14.7 4.7 35 134-174 22-56 (68)
31 d1xqoa_ a.96.1.6 (A:) 8-oxogua 24.1 9.6 0.0007 16.7 0.5 13 65-77 23-35 (253)
32 d3deua1 a.4.5.28 (A:2-141) Tra 23.2 23 0.0016 14.5 4.7 43 129-176 28-70 (140)
33 d2cyya1 a.4.5.32 (A:5-64) Puta 22.3 24 0.0017 14.4 4.3 36 136-176 6-41 (60)
34 d1ulya_ a.4.5.58 (A:) Hypothet 22.0 24 0.0017 14.4 3.3 27 150-176 30-56 (190)
35 d2p4wa1 a.4.5.64 (A:1-194) Tra 20.6 26 0.0019 14.2 3.0 27 150-176 26-52 (194)
36 d1pdnc_ a.4.1.5 (C:) Paired pr 20.2 26 0.0019 14.2 4.1 39 130-175 17-55 (123)
No 1
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=72.07 E-value=3.1 Score=19.54 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 9998623999999999851567888999888899987312299999887752
Q 029662 125 SPPGTLNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 125 ~p~GTLNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
.....|+.+|.+-+..|++- +|++.+.+||+.+.++-+.+.++++-+
T Consensus 27 ~~~~glt~~q~~vL~~L~~~-----~g~~t~~~La~~~~~~~~~vs~~i~~L 73 (145)
T d2hr3a1 27 AQADPVQFSQLVVLGAIDRL-----GGDVTPSELAAAERMRSSNLAALLREL 73 (145)
T ss_dssp TCCCHHHHHHHHHHHHHHHT-----TSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHC-----CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 63639899999999999985-----999799999999798988999999999
No 2
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=71.67 E-value=2.4 Score=20.24 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHC
Q ss_conf 239999999998515678889998888999873122999998877526
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCLS 177 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~S 177 (190)
|+-.+..-+..|+. ++|||++.+||+.+.+..+-|.++++-+.
T Consensus 19 Ls~~~~~iL~~L~~-----~~~~~t~~eLa~~~~i~~~tvs~~l~~L~ 61 (109)
T d2d1ha1 19 ITDTDVAVLLKMVE-----IEKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp CCHHHHHHHHHHHH-----HCSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----CCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 59999999999997-----69898899999998856769999999999
No 3
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=71.29 E-value=2.8 Score=19.77 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHCHHHHHHHHHHHHHC
Q ss_conf 9998888999873122999998877526
Q 029662 150 NGPLDAKQIAEKFRLDVLQVQAILQCLS 177 (190)
Q Consensus 150 ~gPM~v~~iAeKFrv~v~~vq~Ilqf~S 177 (190)
++|++..+|||...+..+.|.+|++-|.
T Consensus 16 ~~~~ss~~IA~~~~~~~~~v~kIl~~L~ 43 (127)
T d1xd7a_ 16 DEKTSSEIIADSVNTNPVVVRRMISLLK 43 (127)
T ss_dssp CSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9998999999886959999999999999
No 4
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.40 E-value=2.6 Score=19.98 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH-CHHHHHHHHHHHHHC
Q ss_conf 239999999998515678889998888999873-122999998877526
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKF-RLDVLQVQAILQCLS 177 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKF-rv~v~~vq~Ilqf~S 177 (190)
|+..|. .++.+.+.-- .+--+++++|+.+| .+.+..|..+++||+
T Consensus 4 Ls~~q~-~V~~~i~s~~--~~eGi~~~el~~~l~~~~~~~i~~aid~L~ 49 (69)
T d1dpua_ 4 LTVAQN-QVLNLIKACP--RPEGLNFQDLKNQLKHMSVSSIKQAVDFLS 49 (69)
T ss_dssp SCHHHH-HHHHHHHHCC--CTTTEEHHHHHHHSTTSCHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHCC--CCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 989999-9999998388--856838999998816999999999999998
No 5
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=67.36 E-value=2.3 Score=20.33 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHCHHHHHHHHHHHHHC
Q ss_conf 89998888999873122999998877526
Q 029662 149 HNGPLDAKQIAEKFRLDVLQVQAILQCLS 177 (190)
Q Consensus 149 h~gPM~v~~iAeKFrv~v~~vq~Ilqf~S 177 (190)
+.||+++.+||++-.++...+++|+.++.
T Consensus 31 ~~gp~s~~eLA~~~g~~~~~l~rlLr~l~ 59 (85)
T d1tw3a1 31 LAGARTVKALAARTDTRPEALLRLIRHLV 59 (85)
T ss_dssp HTTCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 54999999999884929269999999998
No 6
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.11 E-value=5.2 Score=18.24 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHCHHHHHHHHHHH
Q ss_conf 623999999999851567888999-8888999873122999998877
Q 029662 129 TLNVAQLRRIMLLHQGKADDHNGP-LDAKQIAEKFRLDVLQVQAILQ 174 (190)
Q Consensus 129 TLNva~l~~ii~L~QGk~~~h~gP-M~v~~iAeKFrv~v~~vq~Ilq 174 (190)
+|.+.+=.+||+.|+- || |...+||..|-|.-+.|..|++
T Consensus 7 ~LT~~eK~~ii~~~e~------g~k~sq~eIA~~fGv~~STvs~IlK 47 (66)
T d1hlva1 7 QLTFREKSRIIQEVEE------NPDLRKGEIARRFNIPPSTLSTILK 47 (66)
T ss_dssp CCCHHHHHHHHHHHHH------CTTSCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 3779999999999980------8721099999995997647999998
No 7
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=60.09 E-value=2.8 Score=19.80 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHCHHHHHHHHHHHHHC
Q ss_conf 9998888999873122999998877526
Q 029662 150 NGPLDAKQIAEKFRLDVLQVQAILQCLS 177 (190)
Q Consensus 150 ~gPM~v~~iAeKFrv~v~~vq~Ilqf~S 177 (190)
.||+++.+||++..++...+++++.++.
T Consensus 38 ~gp~t~~eLA~~~g~~~~~l~rLlr~L~ 65 (92)
T d1qzza1 38 AGADTLAGLADRTDTHPQALSRLVRHLT 65 (92)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8999999999887839169999999998
No 8
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=59.08 E-value=5.6 Score=18.04 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=34.2
Q ss_pred CCCCCCCCCHHHHH--HHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 78999862399999--9999851567888999888899987312299999887752
Q 029662 123 KPSPPGTLNVAQLR--RIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 123 r~~p~GTLNva~l~--~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
=-+|-|.-.-.++| +|..-|.| +++.++|.||.+-...|.+|+.-+
T Consensus 43 lYiP~~~~~~~~~Rn~~I~~ef~G--------~n~~eLA~kY~lS~~~I~~Ii~~~ 90 (94)
T d1rr7a_ 43 VYIPRGQALDSLIRDLRIWNDFNG--------RNVSELTTRYGVTFNTVYKAIRRM 90 (94)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHCCS--------SCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 763060888999999999999089--------989999999897799999999997
No 9
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=57.15 E-value=6.1 Score=17.84 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHC
Q ss_conf 9999999998515678889998888999873122999998877526
Q 029662 132 VAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCLS 177 (190)
Q Consensus 132 va~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~S 177 (190)
-.-+..|+.+.+ ++++++++++||++|.|-..-|.+-++.+.
T Consensus 6 ~eR~~~Il~~L~----~~~~~vs~~~La~~l~VS~~TI~rdi~~L~ 47 (65)
T d1j5ya1 6 QERLKSIVRILE----RSKEPVSGAQLAEELSVSRQVIVQDIAYLR 47 (65)
T ss_dssp HHHHHHHHHHHH----HCSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999----859978599999997989999999999999
No 10
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=56.99 E-value=3 Score=19.67 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=27.3
Q ss_pred CCHHHHHHHHCHHHHHHHHHHHHHCCCCC
Q ss_conf 88889998731229999988775268998
Q 029662 153 LDAKQIAEKFRLDVLQVQAILQCLSLPPE 181 (190)
Q Consensus 153 M~v~~iAeKFrv~v~~vq~Ilqf~SlP~e 181 (190)
++..+||.++.+..+.|.+.+.++.||++
T Consensus 31 ~s~~eiA~~~G~s~~~V~~~l~L~~lp~~ 59 (114)
T d1r71a_ 31 KKKGDIAKEIGKSPAFITQHVTLLDLPEK 59 (114)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHGGGSCCHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCHH
T ss_conf 98999999977729999999999679999
No 11
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=53.59 E-value=7 Score=17.50 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHH
Q ss_conf 99999998515678889998888999873122999998877
Q 029662 134 QLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQ 174 (190)
Q Consensus 134 ~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilq 174 (190)
.-+.||.++-|.-+ ..||+..+||+++.|-..-|..|..
T Consensus 12 rer~Ii~~ryGl~~--~~~~tl~eIa~~lgiS~erVrqi~~ 50 (61)
T d1ku3a_ 12 REAMVLKMRKGLID--GREHTLEEVGAYFGVTRERIRQIEN 50 (61)
T ss_dssp HHHHHHHHHHTTTT--SSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--CCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999847789--9977899988997988999999999
No 12
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=51.81 E-value=4 Score=18.88 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=27.7
Q ss_pred CCHHHHHHHHCHHHHHHHHHHHHHCCCCC
Q ss_conf 88889998731229999988775268998
Q 029662 153 LDAKQIAEKFRLDVLQVQAILQCLSLPPE 181 (190)
Q Consensus 153 M~v~~iAeKFrv~v~~vq~Ilqf~SlP~e 181 (190)
++.++||++|-...+.|.+.|..+.||++
T Consensus 20 ~t~~~iA~~~Gks~~~V~~~LrLl~L~~~ 48 (93)
T d1vz0a1 20 LTQEEVARRVGKARSTVANALRLLQLPPE 48 (93)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHGGGSCHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999985146999999989998999
No 13
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=50.46 E-value=7.9 Score=17.20 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 9999999851567888999888899987312299999887752
Q 029662 134 QLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 134 ~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
+.+.+..|..-.....+++|++.+||++..+.-+.+-++|+-+
T Consensus 3 ~~~~l~~l~~~~~~~~~~~lt~~eLa~~l~i~~~~vs~~l~~L 45 (85)
T d3ctaa1 3 YYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDL 45 (85)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999998260158999889999999887887899999999
No 14
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=46.61 E-value=8.1 Score=17.12 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 23999999999851567888999888899987312299999887752
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
|+..|..-+..|++ +|++.+.+||+.+.++.+-|.++++=+
T Consensus 33 lt~~q~~iL~~l~~------~~~~t~~~la~~~~i~~~~vs~~l~~L 73 (143)
T d1s3ja_ 33 VTPAQLFVLASLKK------HGSLKVSEIAERMEVKPSAVTLMADRL 73 (143)
T ss_dssp CCHHHHHHHHHHHH------HSEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH------CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79999999999997------799899999999896988999999999
No 15
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=45.16 E-value=7.2 Score=17.41 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHCHHHHHHHHHHHHHC
Q ss_conf 9998888999873122999998877526
Q 029662 150 NGPLDAKQIAEKFRLDVLQVQAILQCLS 177 (190)
Q Consensus 150 ~gPM~v~~iAeKFrv~v~~vq~Ilqf~S 177 (190)
+.++++++||+...+....+.+|++-|+
T Consensus 21 ~~~vss~~IA~~~~i~~~~l~kil~~L~ 48 (138)
T d1ylfa1 21 SSLCTSDYMAESVNTNPVVIRKIMSYLK 48 (138)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9868499999997969999999999998
No 16
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=44.67 E-value=9.7 Score=16.66 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHH
Q ss_conf 99999998515678889998888999873122999998877
Q 029662 134 QLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQ 174 (190)
Q Consensus 134 ~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilq 174 (190)
.=+.||.++-|..+ ..||+..+||+.|.|-..-|..|..
T Consensus 9 rE~~Ii~~rfGl~~--~~~~tl~eI~~~lgiSrerVrqie~ 47 (68)
T d2p7vb1 9 REAKVLRMRFGIDM--NTDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp HHHHHHHHHTTTTS--SSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC--CCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999808899--9868899999997978999999999
No 17
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=43.99 E-value=10 Score=16.60 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 23999999999851567888999888899987312299999887752
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
|+.+|..-+..|++ +|++++.+||+.+.++-+.|-++++-+
T Consensus 28 lt~~q~~iL~~i~~------~~~~t~~~la~~l~i~~~tvs~~l~~L 68 (139)
T d2a61a1 28 ITPAQFDILQKIYF------EGPKRPGELSVLLGVAKSTVTGLVKRL 68 (139)
T ss_dssp CCHHHHHHHHHHHH------HCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH------CCCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 79999999999997------699899999998398814426999999
No 18
>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=43.55 E-value=7.1 Score=17.44 Aligned_cols=28 Identities=14% Similarity=0.440 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHCH---HHHHHHHHHHHH
Q ss_conf 8999888899987312---299999887752
Q 029662 149 HNGPLDAKQIAEKFRL---DVLQVQAILQCL 176 (190)
Q Consensus 149 h~gPM~v~~iAeKFrv---~v~~vq~Ilqf~ 176 (190)
+.|||++.+||++..+ ++..+.+|+.++
T Consensus 41 ~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L 71 (101)
T d1fp2a1 41 HGKPISLSNLVSILQVPSSKIGNVRRLMRYL 71 (101)
T ss_dssp HTSCEEHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 6899999999987499876515899999999
No 19
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=42.31 E-value=8.1 Score=17.11 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 23999999999851567888999888899987312299999887752
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
|+-.+.+-..+|+. +++||++.+||++..+..+-|-++|+.+
T Consensus 24 l~~~~~~i~~~L~~-----~~~plt~~ela~~l~vsk~~vs~~l~~L 65 (151)
T d1ku9a_ 24 LNKSVGAVYAILYL-----SDKPLTISDIMEELKISKGNVSMSLKKL 65 (151)
T ss_dssp CCHHHHHHHHHHHH-----CSSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----CCCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999999984-----8989289999998677702499999999
No 20
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=39.58 E-value=12 Score=16.20 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.9
Q ss_pred CCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 88999888899987312299999887752
Q 029662 148 DHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 148 ~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
++..|+++.+||++..+.-+-+.++|.-+
T Consensus 16 ~~~~~~s~~eia~~~~~~~st~~rll~tL 44 (75)
T d1mkma1 16 KNPGDVSVSEIAEKFNMSVSNAYKYMVVL 44 (75)
T ss_dssp HCSSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 57999899999999791999999999999
No 21
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=38.88 E-value=12 Score=16.13 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 8623999999999851567888999888899987312299999887752
Q 029662 128 GTLNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 128 GTLNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
-.|+..|..-+..|++. +++.+.+||+...++.+.|.++++=+
T Consensus 37 ~~Lt~~q~~vL~~l~~~------~~~t~~~la~~~~l~~~tvs~~i~rL 79 (162)
T d2fxaa1 37 YDLNINEHHILWIAYQL------NGASISEIAKFGVMHVSTAFNFSKKL 79 (162)
T ss_dssp GTCCHHHHHHHHHHHHH------TSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCC------CCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 59998999999652118------99189999999769940319989999
No 22
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=36.93 E-value=13 Score=15.95 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHH
Q ss_conf 9999999851567888999888899987312299999887
Q 029662 134 QLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAIL 173 (190)
Q Consensus 134 ~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Il 173 (190)
.=+.||.++-|..++ -|++.++||+.|.|--.-|-.|.
T Consensus 22 rE~~Ii~~rfGl~~~--~~~tl~eI~~~lgiSrERVRQie 59 (87)
T d1ttya_ 22 REAMVLRMRYGLLDG--KPKTLEEVGQYFNVTRERIRQIE 59 (87)
T ss_dssp HHHHHHHHHHTTTTS--SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCC--CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999997277899--96889999999598899999999
No 23
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=35.70 E-value=14 Score=15.83 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 23999999999851567888999888899987312299999887752
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
|+..|..-++.|++ ++++.+.+||+++.++-+-|-++++=+
T Consensus 27 lt~~q~~iL~~i~~------~~~~t~~~la~~l~i~~~tvs~~l~~L 67 (144)
T d1lj9a_ 27 LTRGQYLYLVRVCE------NPGIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp CTTTHHHHHHHHHH------STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH------CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 89999999999982------899899999998782471699999999
No 24
>d1t1ea2 d.58.3.2 (A:12-190) Pro-kumamolisin activation domain {Bacillus sp. MN-32 [TaxId: 198803]}
Probab=33.55 E-value=15 Score=15.62 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHC
Q ss_conf 39999999998515678889998888999873122999998877526
Q 029662 131 NVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCLS 177 (190)
Q Consensus 131 Nva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~S 177 (190)
|.+++...+....-.+.++...|+-.|++++|.-....++.|.+||.
T Consensus 39 ~~~~l~~~l~~~~p~sp~yg~~Lt~~e~~~~f~ps~~~~~~V~~wL~ 85 (179)
T d1t1ea2 39 RGDELEAHVERQAALAPHARVHLEREAFAASHGASLDDFAEIRKFAE 85 (179)
T ss_dssp THHHHHHHHHHHTTSCTTSCCCCCHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 97899988860088995215557999999887879999999999998
No 25
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=31.90 E-value=16 Score=15.46 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHH
Q ss_conf 99999998515678889998888999873122999998877
Q 029662 134 QLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQ 174 (190)
Q Consensus 134 ~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilq 174 (190)
.-++|+.|+--.- |+..+||+.+.+....|..++.
T Consensus 25 ~~r~v~~l~~~~~------~s~~eIA~~lgis~~tv~~~~~ 59 (71)
T d1rp3a2 25 REKLVIQLIFYEE------LPAKEVAKILETSVSRVSQLKA 59 (71)
T ss_dssp HHHHHHHHHHTSC------CCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999998684------8999999997989999999999
No 26
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.19 E-value=17 Score=15.29 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 23999999999851567888999888899987312299999887752
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
|+..|..-+..|++ +|++.+.+||+.+.++-+-+.++++-+
T Consensus 28 lt~~q~~vL~~l~~------~~~~t~~~la~~~~i~~~~vs~~i~~L 68 (136)
T d2fbia1 28 LTEQQWRVIRILRQ------QGEMESYQLANQACILRPSMTGVLARL 68 (136)
T ss_dssp CCHHHHHHHHHHHH------HCSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH------CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79999999999997------699899999999887898899999999
No 27
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.90 E-value=18 Score=15.05 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 23999999999851567888999888899987312299999887752
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
|+.+|..-++.|+. +.+++.+.+||+++.++-+.+-+++.=+
T Consensus 26 lt~~q~~iL~~l~~-----~~~~~t~~~la~~~~~~~~~vs~~v~~L 67 (137)
T d2fbha1 26 LSQARWLVLLHLAR-----HRDSPTQRELAQSVGVEGPTLARLLDGL 67 (137)
T ss_dssp CTTTHHHHHHHHHH-----CSSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----CCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79999999999987-----6999769999999897898999999999
No 28
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=27.05 E-value=19 Score=14.96 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 23999999999851567888999888899987312299999887752
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
|+..|..-+..|++ ++++++.+||+.+.++.+.+-++++=+
T Consensus 32 Lt~~q~~vL~~l~~------~~~~t~~ela~~~~i~~~~vs~~v~~L 72 (138)
T d1jgsa_ 32 ITAAQFKVLCSIRC------AACITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp SCHHHHHHHHHHHH------HSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH------CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 89999999886871------809899999999787885799999987
No 29
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=25.38 E-value=20 Score=14.88 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 623999999999851567888999888899987312299999887752
Q 029662 129 TLNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 129 TLNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
-|+..|..-+..|++. .++++.+.+||++..+..+.+-++++-+
T Consensus 31 ~Lt~~q~~iL~~l~~~----~~~~~t~~eia~~~~~~~~~vs~~l~~L 74 (125)
T d1p4xa1 31 DMTIKEFILLTYLFHQ----QENTLPFKKIVSDLCYKQSDLVQHIKVL 74 (125)
T ss_dssp SSCHHHHHHHHHHHSC----SCSEEEHHHHHHHSSSCGGGTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9988999999999984----3698679999999688824399999999
No 30
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=25.06 E-value=21 Score=14.75 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHH
Q ss_conf 99999998515678889998888999873122999998877
Q 029662 134 QLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQ 174 (190)
Q Consensus 134 ~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilq 174 (190)
.-++|+.|+--.- |+.++||+.+.+...-|...++
T Consensus 22 ~~r~v~~l~~~~~------~s~~eIA~~lgis~~tv~~~l~ 56 (68)
T d1or7a1 22 DLRMAITLRELDG------LSYEEIAAIMDCPVGTVRSRIF 56 (68)
T ss_dssp HHHHHHHHHHTTC------CCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC------CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999909------8999999998949999999999
No 31
>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG {Pyrobaculum aerophilum [TaxId: 13773]}
Probab=24.08 E-value=9.6 Score=16.69 Aligned_cols=13 Identities=62% Similarity=0.922 Sum_probs=10.2
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 5434690089999
Q 029662 65 VLEERDPQYDAML 77 (190)
Q Consensus 65 vl~erDp~ydaMl 77 (190)
.+||+||||.||-
T Consensus 23 ~iEe~DpQy~av~ 35 (253)
T d1xqoa_ 23 KLERRDPQYRAVC 35 (253)
T ss_dssp HHHTTSHHHHHHH
T ss_pred HHHHHCHHHHHHH
T ss_conf 8997389999999
No 32
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=23.20 E-value=23 Score=14.53 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 623999999999851567888999888899987312299999887752
Q 029662 129 TLNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 129 TLNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
-|+.+|..-+..|++. ++++.+.+||+++.++-+.+-+++.-+
T Consensus 28 glt~~~~~~L~~l~~~-----~~~~t~~~la~~l~i~~~~vs~~l~~L 70 (140)
T d3deua1 28 ELTQTHWVTLHNIHQL-----PPDQSQIQLAKAIGIEQPSLVRTLDQL 70 (140)
T ss_dssp TCCHHHHHHHHHHHHS-----CSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHC-----CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9799999999999874-----999569999999787776788999999
No 33
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.27 E-value=24 Score=14.43 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 99999851567888999888899987312299999887752
Q 029662 136 RRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 136 ~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
+.|+.+.|. ++.+++.+||++..+....|..-++-+
T Consensus 6 ~~Il~~L~~-----n~r~s~~eiA~~l~ls~~~v~~Ri~~L 41 (60)
T d2cyya1 6 KKIIKILQN-----DGKAPLREISKITGLAESTIHERIRKL 41 (60)
T ss_dssp HHHHHHHHH-----CTTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999998-----289999999999893999999999999
No 34
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.98 E-value=24 Score=14.39 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 999888899987312299999887752
Q 029662 150 NGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 150 ~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
+|||+|.+||+.+.+....|-..|+-|
T Consensus 30 ~~~~s~~ela~~lg~s~~~v~~hl~~L 56 (190)
T d1ulya_ 30 NKEMTISQLSEILGKTPQTIYHHIEKL 56 (190)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 199879999999891999999999999
No 35
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=20.58 E-value=26 Score=14.22 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 999888899987312299999887752
Q 029662 150 NGPLDAKQIAEKFRLDVLQVQAILQCL 176 (190)
Q Consensus 150 ~gPM~v~~iAeKFrv~v~~vq~Ilqf~ 176 (190)
+|||.+.+||+.|.+...-|-.-|+-|
T Consensus 26 ~~~~~~~ela~~l~~s~~~v~~HL~~L 52 (194)
T d2p4wa1 26 KRPYFVSELSRELGVGQKAVLEHLRIL 52 (194)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 089879999999890998999999999
No 36
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=20.22 E-value=26 Score=14.17 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 2399999999985156788899988889998731229999988775
Q 029662 130 LNVAQLRRIMLLHQGKADDHNGPLDAKQIAEKFRLDVLQVQAILQC 175 (190)
Q Consensus 130 LNva~l~~ii~L~QGk~~~h~gPM~v~~iAeKFrv~v~~vq~Ilqf 175 (190)
|-...=+.|+.+|+.- |+..+||..|.|-.+-|.+|++-
T Consensus 17 Ls~dlR~rIv~~~~~G-------~s~r~iA~~~~VS~~tV~k~l~r 55 (123)
T d1pdnc_ 17 LPNNIRLKIVEMAADG-------IRPCVISRQLRVSHGCVSKILNR 55 (123)
T ss_dssp CCHHHHHHHHHHHHTT-------CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-------CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9899999999999804-------89999999989699999999999
Done!