BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029664
MEAPETVVVDKNKKGFYSVWAIPPDEVRARVKKLMEGLRSEFGGPQFDPHVTVVGAMSLT
ADDALEKFKSACNGLKAYNCTVNRVATGTFFYQCVFLLLHPTPEVAEPSSHCCGHFGYKS
STPYMPHLSLLYGDLTDDEKKIAQEKAHKLDESIGSLSFPITRLQLWKTDTEDTTLKSWE
MVAECNLSPD

High Scoring Gene Products

Symbol, full name Information P value
AT4G18930 protein from Arabidopsis thaliana 6.6e-58
AT4G18940 protein from Arabidopsis thaliana 3.5e-43

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029664
        (190 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2117099 - symbol:AT4G18930 species:3702 "Arabi...   595  6.6e-58   1
TAIR|locus:2117114 - symbol:AT4G18940 species:3702 "Arabi...   456  3.5e-43   1


>TAIR|locus:2117099 [details] [associations]
            symbol:AT4G18930 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0004112
            "cyclic-nucleotide phosphodiesterase activity" evidence=IEA;IDA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISM;IDA] [GO:0016070 "RNA metabolic process" evidence=IEA]
            [GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
            ligation" evidence=TAS] InterPro:IPR009097 InterPro:IPR012386
            Pfam:PF07823 PIRSF:PIRSF017903 GO:GO:0005737 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL021711 EMBL:AL161549
            SUPFAM:SSF55144 GO:GO:0004112 GO:GO:0006388 EMBL:Y11650
            EMBL:AY062822 EMBL:AY081630 IPI:IPI00522282 PIR:T05030
            RefSeq:NP_193628.1 UniGene:At.29 PDB:1FSI PDB:1JH6 PDB:1JH7
            PDBsum:1FSI PDBsum:1JH6 PDBsum:1JH7 ProteinModelPortal:O04147
            SMR:O04147 STRING:O04147 PaxDb:O04147 PRIDE:O04147
            EnsemblPlants:AT4G18930.1 GeneID:827628 KEGG:ath:AT4G18930
            GeneFarm:4171 TAIR:At4g18930 eggNOG:NOG123043 HOGENOM:HOG000241544
            InParanoid:O04147 OMA:STPYMPH PhylomeDB:O04147
            ProtClustDB:CLSN2685469 EvolutionaryTrace:O04147
            Genevestigator:O04147 GermOnline:AT4G18930 Uniprot:O04147
        Length = 181

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 113/181 (62%), Positives = 138/181 (76%)

Query:     9 VDKNKKGFYSVWAIPPDEVRARVKKLMEGLRSEFGGPQFDPHVTVVGAMSLTADDALEKF 68
             +++ KK  YSVWA+P +E   R KKLME LRSEF GP+F PHVTV  +  LTAD+A + F
Sbjct:     1 MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMF 60

Query:    69 KSACNGLKAYNCTVNRVATGTFFYQCVFLLLHPTPEVAEPSSHCCGHFGYKSSTPYMPHL 128
             +SAC+GLKAY  TV+RV+TGTFF+QCVFLLL  TPEV E   HC  HF   ++TPYMPHL
Sbjct:    61 ESACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHL 120

Query:   129 SLLYGDLTDDEKKIAQEKAHKLDESIGSLSFPITRLQLWKTDTEDTTLKSWEMVAECNLS 188
             SLLY +LT++EKK AQEKA+ LD S+  LSF + RL L KTDTED TL++WE VA CNL+
Sbjct:   121 SLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLN 180

Query:   189 P 189
             P
Sbjct:   181 P 181


>TAIR|locus:2117114 [details] [associations]
            symbol:AT4G18940 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0004112
            "cyclic-nucleotide phosphodiesterase activity" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0016070 "RNA metabolic process" evidence=IEA]
            InterPro:IPR009097 InterPro:IPR012386 Pfam:PF07823
            PIRSF:PIRSF017903 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0016874 EMBL:AL021711 EMBL:AL161549 GO:GO:0005622
            GO:GO:0016070 SUPFAM:SSF55144 GO:GO:0004112 eggNOG:NOG123043
            HOGENOM:HOG000241544 ProtClustDB:CLSN2685469 EMBL:AY133702
            IPI:IPI00527783 PIR:T05031 RefSeq:NP_193629.1 UniGene:At.32854
            HSSP:O04147 ProteinModelPortal:O49408 SMR:O49408 PaxDb:O49408
            PRIDE:O49408 EnsemblPlants:AT4G18940.1 GeneID:827629
            KEGG:ath:AT4G18940 TAIR:At4g18940 InParanoid:O49408 OMA:VEHEKER
            PhylomeDB:O49408 Genevestigator:O49408 Uniprot:O49408
        Length = 196

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 89/189 (47%), Positives = 124/189 (65%)

Query:     1 MEAPETVVVDKNKKGFYSVWAIPPDEVRARVKKLMEGLRSEFGGPQFDPHVTVVGAM--S 58
             ++ P+T   D+ +K  Y++WA+P D+V  R+++LMEGLRSEFGGP FDPH+T+VG     
Sbjct:     9 LQPPQTQEDDEEEKAMYAIWAVPEDDVEDRLQRLMEGLRSEFGGPAFDPHLTLVGPFPYK 68

Query:    59 LTADDALEKFKSACNGLKAYNCTVNRVATGTFFYQCVFLLLHPTPEVAEPSSHCCGHFGY 118
             LTA +A   FKSAC G K Y  TV++V+ GT ++QC+++ L  T EV   + H   HF  
Sbjct:    69 LTASEAKRMFKSACEGFKVYPATVDQVSAGTSYFQCLYVSLRHTVEVMNAAGHFMAHFKP 128

Query:   119 KSSTPYMPHLSLLYGDLTDDEKKIAQEKAHKLDESIGSLSFPITRLQLWKTDTEDTTLKS 178
              +   Y+PH+S+LYGDLT+ EKK A EKA+ LD S+  L+F I R+ LW TD +   + S
Sbjct:   129 FTGKFYVPHMSILYGDLTEREKKKALEKAYTLDSSLDGLNFKINRVALWITDAD---VGS 185

Query:   179 WEMVAECNL 187
             W  V E  L
Sbjct:   186 WVKVDEHTL 194


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      190       190   0.00091  110 3  11 22  0.47    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  185 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.19u 0.14s 19.33t   Elapsed:  00:00:01
  Total cpu time:  19.19u 0.14s 19.33t   Elapsed:  00:00:01
  Start:  Sat May 11 06:29:15 2013   End:  Sat May 11 06:29:16 2013

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