BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029664
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04147|CPD_ARATH Cyclic phosphodiesterase OS=Arabidopsis thaliana GN=At4g18930 PE=1
SV=1
Length = 181
Score = 236 bits (601), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 113/181 (62%), Positives = 138/181 (76%)
Query: 9 VDKNKKGFYSVWAIPPDEVRARVKKLMEGLRSEFGGPQFDPHVTVVGAMSLTADDALEKF 68
+++ KK YSVWA+P +E R KKLME LRSEF GP+F PHVTV + LTAD+A + F
Sbjct: 1 MEEVKKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMF 60
Query: 69 KSACNGLKAYNCTVNRVATGTFFYQCVFLLLHPTPEVAEPSSHCCGHFGYKSSTPYMPHL 128
+SAC+GLKAY TV+RV+TGTFF+QCVFLLL TPEV E HC HF ++TPYMPHL
Sbjct: 61 ESACDGLKAYTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHL 120
Query: 129 SLLYGDLTDDEKKIAQEKAHKLDESIGSLSFPITRLQLWKTDTEDTTLKSWEMVAECNLS 188
SLLY +LT++EKK AQEKA+ LD S+ LSF + RL L KTDTED TL++WE VA CNL+
Sbjct: 121 SLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLN 180
Query: 189 P 189
P
Sbjct: 181 P 181
>sp|Q6CGD3|CPD1_YARLI 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CPD1 PE=3 SV=2
Length = 216
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 40/179 (22%)
Query: 18 SVWAIPPDE--VRARVKKLMEGLRSEFGGPQ-FDPHVTVVGAMSLT----ADDALEKFKS 70
S+W PP + ++ ++GL+ F + F+PH+T+ +S+ D L++ +
Sbjct: 4 SLWLQPPRNSPIWQQLATTIQGLKPIFSDSENFEPHITLTSNISVNTQGQVDFVLDRAVA 63
Query: 71 ACNGL-KAYNCTVNRVATGTFFYQCVFLLLHPTPEVAEPSSHCCGHFGYK---------- 119
A + + + ++ V G+ F++ V+L + PTPE+ + C F Y
Sbjct: 64 AAKCVPQGFQIHLSSVKYGSRFFKKVYLQVEPTPELLSLARICREDFVYMPEAMSQARNY 123
Query: 120 ----------------------SSTPYMPHLSLLYGDLTDDEKKIAQEKAHKLDESIGS 156
+ Y PH+SL+Y DL E + +L+++ GS
Sbjct: 124 QAMSAEERQKIDTQVGQRAAEWTRNEYDPHVSLVYSDLYPVEDADRRTIETRLEDTFGS 182
>sp|P62809|CPD_WHEAT Cyclic phosphodiesterase (Fragments) OS=Triticum aestivum PE=1 SV=1
Length = 51
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 118 YKSSTPYMPHLSLLYGDLTDDEK 140
Y ++TPYMPH+SLLYGDLTD+EK
Sbjct: 29 YTATTPYMPHVSLLYGDLTDEEK 51
>sp|Q0UME8|CPD1_PHANO 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=CPD1 PE=3 SV=1
Length = 193
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 35/197 (17%)
Query: 18 SVWAIPPDEVRAR--VKKLMEGLRSEFGGP-QFDPHVTVVGAMSLTAD--------DALE 66
S+W +PP R + L++ S FG +F PHVT+ +S + D+LE
Sbjct: 5 SLWLLPPKSHRLNSILPTLIDQTSSHFGSAHRFLPHVTITSEISPSTHSPNPQAWLDSLE 64
Query: 67 KFKSACNGLKAYNCTVNRVATGTFFYQCVFLLLHPTPEVAEPSSHC---CGHFGYK---- 119
+G K ++A+ F++ +++ H T + + + C FG +
Sbjct: 65 ----ISSGDK-IEVMFEKLASEDVFFRKLYIKCHKTEGLKKLAVLCRREVEGFGEEREAA 119
Query: 120 --SSTPYMPHLSLLYGDLTDDE-------KKIAQEKAHKLDESIGSLSFPITRLQLWKTD 170
++ Y PHLSLLY D + +K+AQ L+ + RL L T
Sbjct: 120 KWATESYNPHLSLLYHDCPSIDASGLAEIEKLAQSTGVNLNGQSDLGGWSGGRLVLVPT- 178
Query: 171 TEDTTLKSWEMVAECNL 187
D ++ W +AE L
Sbjct: 179 --DKSIDQWSPIAEREL 193
>sp|Q6LR24|PEPT_PHOPR Peptidase T OS=Photobacterium profundum GN=pepT PE=3 SV=1
Length = 409
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 72 CNGLKAYNCTVNRVATGTFFYQCVFLLLHPTPEVAEPSSHCCGHFGYKSSTPYMPHLSLL 131
C+G+ + T + F L+ PT E E + H G + KS P + L
Sbjct: 218 CHGVNVHPGTAKNKMINSMNIAAQFQLMMPTEETPECTEHYEGFYHLKSMEPSVAKTELG 277
Query: 132 YGDLTDDEKKIAQEKA---HKLDESIGSLSFPITRLQLWKTD 170
Y D K + Q K K+DE SL+ R++L TD
Sbjct: 278 YIIRDFDRKGLEQRKVFMQSKVDELNSSLTK--GRVELILTD 317
>sp|Q6CXV0|CPD1_KLULA 2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=CPD1 PE=3 SV=1
Length = 213
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 44/196 (22%)
Query: 32 KKLMEGLRSEF-GGPQFDPHVTVVGAMSL----TADDALEKFKSACNGLKAYNCTVNRVA 86
K L+E L++ F P F+PHVTV +S LE A N +K+ + N +
Sbjct: 20 KTLIESLQTLFPNSPVFEPHVTVCSGLSCENMEEVHKVLEMAHHAINAVKSKVDSENALV 79
Query: 87 ------TGTFFYQCVFLLLHPTPEVAEPS----SHCCGHFGYKS--STPYMPHLSLLYGD 134
G +++ L P P + + S G + + PHLSL Y D
Sbjct: 80 EFDGFNIGKKYFEKCRLECKPNPMLYSLAKLIRSMFVGELNIDTWLFEEFHPHLSLAYSD 139
Query: 135 L-----------------------TDDEKKIAQEKAHKLDESIGSLSFPITRLQLWKTDT 171
+ + E + A+KL ++ SFP+T +K
Sbjct: 140 IYPMDQAMIRLIRQRIEDLFDVTTEEIESHSRDQDAYKLQHTLKGWSFPLT----FKVVR 195
Query: 172 EDTTLKSWEMVAECNL 187
+ ++ WE+++E +
Sbjct: 196 CEGPVEEWEVLSEVTV 211
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 96 FLLLHPTPEVAEPSSHCCGHFGYKSSTPYMPHL 128
+++H PE ++ + CC FG K YMP L
Sbjct: 561 LIIVHGPPEASQDLAECCRAFGGKDIKVYMPKL 593
>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo
sapiens GN=CPSF2 PE=1 SV=2
Length = 782
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 96 FLLLHPTPEVAEPSSHCCGHFGYKSSTPYMPHL 128
+++H PE ++ + CC FG K YMP L
Sbjct: 561 LIIVHGPPEASQDLAECCRAFGGKDIKVYMPKL 593
>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos
taurus GN=CPSF2 PE=1 SV=1
Length = 782
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 96 FLLLHPTPEVAEPSSHCCGHFGYKSSTPYMPHL 128
+++H PE ++ + CC FG K YMP L
Sbjct: 561 LIIVHGPPEASQDLAECCRAFGGKDIKVYMPKL 593
>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila melanogaster GN=Ddx1
PE=2 SV=1
Length = 727
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 97 LLLHPTPEVAEPSSHCCGHFGYKSSTPYMPHLSLLYGDLTDDEKKIAQEKAH-------K 149
+++ P+ E+AE + + F Y S P + L L+ G +++K + H +
Sbjct: 290 IIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGR 349
Query: 150 LDESIGSLSFPITRLQLWKTDTEDTTLKS 178
L+E I S +T + + D D LK
Sbjct: 350 LEEMINSGLVLLTHCRFFVLDEADALLKQ 378
>sp|P05659|MYSN_ACACA Myosin-2 heavy chain, non muscle OS=Acanthamoeba castellanii PE=3
SV=1
Length = 1509
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 137 DDEKKIAQEKAHKLDESIGSLSFPITRLQLWKTDTED 173
D EK++A+E A KL++ + +L I L+ K D E+
Sbjct: 883 DKEKQLAEEDADKLEKDLAALKLKILDLEGEKADLEE 919
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,483,850
Number of Sequences: 539616
Number of extensions: 3019375
Number of successful extensions: 6844
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6833
Number of HSP's gapped (non-prelim): 14
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)