Query 029664
Match_columns 190
No_of_seqs 111 out of 615
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 18:18:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029664.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2285-2289//hhsearch_pdb/029664hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jh6_A Cyclic phosphodiesteras 1.0 1 1 216.3 20.1 177 13-189 5-181 (189)
2 1vgj_A Hypothetical protein PH 1.0 1 1 158.2 12.8 169 16-188 2-183 (184)
3 1iuh_A 2'-5' RNA ligase; riken 1.0 1 1 157.4 14.0 162 16-189 2-181 (198)
4 2d4g_A Hypothetical protein BS 1.0 1 1 149.3 16.2 165 16-190 2-170 (171)
5 2vfk_A AKAP18 delta; APO, hydr 1.0 1 1 140.7 14.8 172 13-190 3-204 (205)
6 2fsq_A ATU0111 protein; alpha- 1.0 1 1 50.2 12.0 166 15-189 41-242 (243)
7 1jh6_A Cyclic phosphodiesteras 1.0 1 1 26.6 3.7 68 17-86 85-157 (189)
8 1iuh_A 2'-5' RNA ligase; riken 1.0 1 1 25.7 5.6 35 45-87 125-159 (198)
9 2pst_X Hypothetical protein PA 1.0 1 1 13.1 1.1 18 5-24 12-29 (74)
10 2khr_A Protein MBTH; sideropho 1.0 1 1 12.5 1.2 22 1-24 4-31 (74)
No 1
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=1.00 E-value=1 Score=216.33 Aligned_cols=177 Identities=64% Similarity=1.041 Sum_probs=155.3
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECEEEECCCEE
Q ss_conf 88237999939954899999999988742199999990785168768946899999998614984169972265246000
Q 029664 13 KKGFYSVWAIPPDEVRARVKKLMEGLRSEFGGPQFDPHVTVVGAMSLTADDALEKFKSACNGLKAYNCTVNRVATGTFFY 92 (190)
Q Consensus 13 ~~~~~slwl~P~~~~~~~l~~~~~~l~~~~~~~~~~pHiTL~g~~~~~~~~~~~~l~~~~~~~~pf~l~~~~v~~~~~~~ 92 (190)
++.+|++|++|++++++.+..+++.++..++.++++|||||.|+++...+++.+.|++++.+.+||+++++|+|++..++
T Consensus 5 ~~~~~~f~~~pp~~~~~~l~~~~~~l~~~~~~~~~~~HiTLlG~~~~~~~~l~~~L~~~a~~~~pf~l~l~g~g~~~~~~ 84 (189)
T 1jh6_A 5 KKDVYSVWALPDEESEPRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTATVDRVSTGTFFF 84 (189)
T ss_dssp CCEEEEEEEEECTTTHHHHHHHHHHHHHHHTCCCCCCCEEEEEEEEECHHHHHHHHHHHHHTCBCEEEEEEEEEEEEETT
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCEECCCCCC
T ss_conf 87747999977889999999999999987599988998998379878989999999998701798389976062157553
Q ss_pred EEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEECEEEEEEECCC
Q ss_conf 18999830891411347888513089999998422574317899789999999997303335986279336999984698
Q 029664 93 QCVFLLLHPTPEVAEPSSHCCGHFGYKSSTPYMPHLSLLYGDLTDDEKKIAQEKAHKLDESIGSLSFPITRLQLWKTDTE 172 (190)
Q Consensus 93 ~vi~l~v~~~~~L~~L~~~~~~~~g~~~~~~f~PHiTLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~L~~~~~~ 172 (190)
++||++++++++|.+|++++++.+|+...++|+|||||||.+...+....+.+.+..+...+.+..|+|++|.||+|..+
T Consensus 85 rvlw~~v~~~~~L~~L~~~v~~~~g~~~~~~f~PHlTLar~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~L~~s~~~ 164 (189)
T 1jh6_A 85 QCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTE 164 (189)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHTTCCCCSCCCCEEEEECCCCCHHHHHHHHHHHHHHCTTCTTCEEEEEEEEEEECCTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCC
T ss_conf 28999406998999999999997099987777773889972399899999999998624577778588418999994898
Q ss_pred CCCCCCCEEEEEECCCC
Q ss_conf 88767814867770789
Q 029664 173 DTTLKSWEMVAECNLSP 189 (190)
Q Consensus 173 ~~~~~~w~~l~~~~L~~ 189 (190)
++...+|+.+++|+|++
T Consensus 165 ~~~~~~w~l~~~~~~~~ 181 (189)
T 1jh6_A 165 DKTLETWETVAVCNLNP 181 (189)
T ss_dssp CTTCTTCEEEEEEECBC
T ss_pred CCCCCEEEEEEEEECCC
T ss_conf 88667289978997478
No 2
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=1.00 E-value=1 Score=158.16 Aligned_cols=169 Identities=16% Similarity=0.153 Sum_probs=126.5
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHH----CCCCCCCCEEEEE--CCCCC-CHHHHHHHHHHHHCCCCCEEEEECEEEEC
Q ss_conf 37999939954899999999988742----1999999907851--68768-94689999999861498416997226524
Q 029664 16 FYSVWAIPPDEVRARVKKLMEGLRSE----FGGPQFDPHVTVV--GAMSL-TADDALEKFKSACNGLKAYNCTVNRVATG 88 (190)
Q Consensus 16 ~~slwl~P~~~~~~~l~~~~~~l~~~----~~~~~~~pHiTL~--g~~~~-~~~~~~~~l~~~~~~~~pf~l~~~~v~~~ 88 (190)
.|.|.+.|++++.+.+.++++.++.. .+.++.++||||. |+++. ..+++.+.+.+++...+||+++++|+|+|
T Consensus 2 R~Fial~~p~~~~~~l~~~~~~l~~~~~~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~~~~pf~l~l~g~g~F 81 (184)
T 1vgj_A 2 RAFIAIDVNESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVKGIGVF 81 (184)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHCSSSEEEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHHTTSBCEEEEEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC
T ss_conf 69999719999999999999988526898586480114899996217998999999999999870599849997457668
Q ss_pred CC--EEEEEEEEEECCCCCCCHHHHHHHH---HCCC-CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEC
Q ss_conf 60--0018999830891411347888513---0899-9999842257431789978999999999730333598627933
Q 029664 89 TF--FYQCVFLLLHPTPEVAEPSSHCCGH---FGYK-SSTPYMPHLSLLYGDLTDDEKKIAQEKAHKLDESIGSLSFPIT 162 (190)
Q Consensus 89 ~~--~~~vi~l~v~~~~~L~~L~~~~~~~---~g~~-~~~~f~PHiTLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 162 (190)
.. .+++||++++.+++|.+|++++.+. +|+. +. +|+|||||||...... ...+.+.+..+. .+.+..|+|+
T Consensus 82 ~~~~~p~vl~~~v~~~~~L~~L~~~l~~~l~~~g~~~~~-~f~PHiTLar~~~~~~-~~~~~~~~~~~~-~~~~~~~~v~ 158 (184)
T 1vgj_A 82 PNPNYIRVIWAGIENDEIIREMAREIEDELAKLGFKKEG-NFVAHITLGRVKFVKD-KLGLTMKLKELA-NEDFGSFVVD 158 (184)
T ss_dssp ECSSSEEEEEEEEETCHHHHHHHHHHHHHHHTTTCCCCC-CCCCEEEEEEEEEESC-HHHHHHHHHHTT-TCEEEEEEEC
T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCEEEEEEECCCCC-HHHHHHHHHHHC-CCCCCCEEEE
T ss_conf 988988689998069879999999999999975989888-8563088896056676-789999999706-8877718996
Q ss_pred EEEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf 69999846988876781486777078
Q 029664 163 RLQLWKTDTEDTTLKSWEMVAECNLS 188 (190)
Q Consensus 163 ~l~L~~~~~~~~~~~~w~~l~~~~L~ 188 (190)
+|.||+|...+ .++.|+++++|+|.
T Consensus 159 ~~~L~~s~~~~-~g~~y~~l~~~~L~ 183 (184)
T 1vgj_A 159 AIELKKSTLTP-KGPIYETLARFELS 183 (184)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECB
T ss_pred EEEEEEEEECC-CCCCEEEEEEEECC
T ss_conf 89999846549-99844598999587
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=1.00 E-value=1 Score=157.42 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=125.9
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHC---CCCCCCCEEEEE--CCCCC-CHHHHHHHHHHHHCCCCCEEEEECEEEECC
Q ss_conf 379999399548999999999887421---999999907851--68768-946899999998614984169972265246
Q 029664 16 FYSVWAIPPDEVRARVKKLMEGLRSEF---GGPQFDPHVTVV--GAMSL-TADDALEKFKSACNGLKAYNCTVNRVATGT 89 (190)
Q Consensus 16 ~~slwl~P~~~~~~~l~~~~~~l~~~~---~~~~~~pHiTL~--g~~~~-~~~~~~~~l~~~~~~~~pf~l~~~~v~~~~ 89 (190)
.|.|.+.|++++.+.+.++++.++..+ +.++.++||||. |+++. ..+++.+.+.+++...+||+++++++++|.
T Consensus 2 RlFial~~p~~~~~~l~~~~~~l~~~~~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~~~~~pf~l~l~g~g~F~ 81 (198)
T 1iuh_A 2 RLFYAVFLPEEVRAALVEAQTKVRPFRGWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLARLEAPFRARLRGTGYFP 81 (198)
T ss_dssp EEEEEEECCHHHHHHHHHHHGGGTTCTTEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHHHHSCCEEEEEEEEEEES
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEECC
T ss_conf 78999858999999999999986530177413788878999808869999999999999998615998499973537898
Q ss_pred C--EEEEEEEEEECCCCCCCHHHHHHHH---H-C-----CC-CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 0--0018999830891411347888513---0-8-----99-99998422574317899789999999997303335986
Q 029664 90 F--FYQCVFLLLHPTPEVAEPSSHCCGH---F-G-----YK-SSTPYMPHLSLLYGDLTDDEKKIAQEKAHKLDESIGSL 157 (190)
Q Consensus 90 ~--~~~vi~l~v~~~~~L~~L~~~~~~~---~-g-----~~-~~~~f~PHiTLa~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
. ++++||+++ +++.|.+|++++++. + | +. +.++|+|||||||...... .+ ...+.+.
T Consensus 82 ~~~~p~vl~l~v-~~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~~~f~PHiTLar~~~~~~---~l-------~~~l~~~ 150 (198)
T 1iuh_A 82 NEGTPRVWFAKA-EAEGFLRLAEGLRAGVEELLGEEAVRIPGWDKPFKPHITLARRKAPAP---RV-------PPVLFGL 150 (198)
T ss_dssp SSSSCSEEEEEE-ECHHHHHHHHHHHHHHHHHHGGGGGGSTTTTSCCCCEEEEEEESSCCC---CC-------CCCCCCE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCH---HH-------HHHHCCC
T ss_conf 999887899979-978999999999999998449876524677899877287285167625---47-------8760586
Q ss_pred CEEECEEEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf 27933699998469888767814867770789
Q 029664 158 SFPITRLQLWKTDTEDTTLKSWEMVAECNLSP 189 (190)
Q Consensus 158 ~~~v~~l~L~~~~~~~~~~~~w~~l~~~~L~~ 189 (190)
.|+|++|.||+|...+ .++.|+++++|+|++
T Consensus 151 ~~~v~~~~L~~S~l~~-~G~~y~~l~~~~L~~ 181 (198)
T 1iuh_A 151 EWPVEGFALVRSELKP-KGPVYTVLEKFSLRG 181 (198)
T ss_dssp EEEECEEEEEEEEECS-SSEEEEEEEEEECCC
T ss_pred EEEECEEEEEEEEECC-CCCEEEEEEEEECCC
T ss_conf 1990479999987279-997416989998999
No 4
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=149.34 Aligned_cols=165 Identities=13% Similarity=0.182 Sum_probs=124.3
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE--CCCCC-CHHHHHHHHHHHHCCCCCEEEEECEEEECCCEE
Q ss_conf 379999399548999999999887421999999907851--68768-946899999998614984169972265246000
Q 029664 16 FYSVWAIPPDEVRARVKKLMEGLRSEFGGPQFDPHVTVV--GAMSL-TADDALEKFKSACNGLKAYNCTVNRVATGTFFY 92 (190)
Q Consensus 16 ~~slwl~P~~~~~~~l~~~~~~l~~~~~~~~~~pHiTL~--g~~~~-~~~~~~~~l~~~~~~~~pf~l~~~~v~~~~~~~ 92 (190)
.|.|.+.|++++.+.+.++.+.+...+ ..++|||||. |+++. ..+++.+.+.+++...+||+++++|+|+|....
T Consensus 2 R~Fiai~~~~~~~~~l~~~~~~~~~~~--~~v~pHiTL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~l~~~g~F~~~~ 79 (171)
T 2d4g_A 2 KYGIVLFPSKKLQDLANSYRKRYDPSY--SLIPPHLTLRASFECAEEKADQLVSHLRNIAKESHPLVLKMTKYSSFAPVN 79 (171)
T ss_dssp EEEEEBCCCHHHHHHHHHHHHHHCGGG--GTSCSCBCCSSCEECCGGGHHHHHHHHHHHHHTCCCEEEEEEEEEECTTTC
T ss_pred EEEEEEECCHHHHHHHHHHHHHHCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEECCCC
T ss_conf 689999389899999999999858264--778980786168757867799999999999705999899987737858998
Q ss_pred EEEEEEEECCCCCCCHHHHHHHHHCC-CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEECEEEEEEECC
Q ss_conf 18999830891411347888513089-99999842257431789978999999999730333598627933699998469
Q 029664 93 QCVFLLLHPTPEVAEPSSHCCGHFGY-KSSTPYMPHLSLLYGDLTDDEKKIAQEKAHKLDESIGSLSFPITRLQLWKTDT 171 (190)
Q Consensus 93 ~vi~l~v~~~~~L~~L~~~~~~~~g~-~~~~~f~PHiTLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~L~~~~~ 171 (190)
.++|++++++++|.+|++++.+.+.. .+.++|+|||||+|.. .......+.+.+. ...+ +..|+|+++.||++.
T Consensus 80 ~vl~l~~~~~~~L~~L~~~l~~~~~~~~~~~~f~PHiTLar~~-~~~~~~~~~~~~~--~~~~-~~~~~v~~i~L~~s~- 154 (171)
T 2d4g_A 80 NVIYIKAEPTEELKTLNEKLYTGVLAGEQEYNFVPHVTVGQNL-SDDEHSDVLGQLK--MQEV-SHEEIVDRFHLLYQL- 154 (171)
T ss_dssp CCEEEEECCCHHHHHHHHHTTSGGGCSCCCSCCCCEEEEECSC-CHHHHHHHHHHHT--TSCC-CEEEEECEEEEEEEC-
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-CHHHHHHHHHHHC--CCCC-CEEEEECEEEEEEEC-
T ss_conf 5899974487699999999985343655578987749854579-8799999999820--7897-606897869999999-
Q ss_pred CCCCCCCCEEEEEECCCCC
Q ss_conf 8887678148677707899
Q 029664 172 EDTTLKSWEMVAECNLSPD 190 (190)
Q Consensus 172 ~~~~~~~w~~l~~~~L~~~ 190 (190)
.++.|+++++|+|++.
T Consensus 155 ---~g~~y~~l~~~~L~~~ 170 (171)
T 2d4g_A 155 ---ENGSWTVYETFLLGRG 170 (171)
T ss_dssp ---TTSCEEEEEEEECC--
T ss_pred ---CCCCEEEEEEEECCCC
T ss_conf ---9994899999855899
No 5
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=1.00 E-value=1 Score=140.71 Aligned_cols=172 Identities=12% Similarity=0.023 Sum_probs=118.5
Q ss_pred CCCEEEEEEECCH-HHHHHHHHHHHHHHHH------CCCCCCCCEEEEE--CCCCC-CHHHHHHHHHHHHCCC------C
Q ss_conf 8823799993995-4899999999988742------1999999907851--68768-9468999999986149------8
Q 029664 13 KKGFYSVWAIPPD-EVRARVKKLMEGLRSE------FGGPQFDPHVTVV--GAMSL-TADDALEKFKSACNGL------K 76 (190)
Q Consensus 13 ~~~~~slwl~P~~-~~~~~l~~~~~~l~~~------~~~~~~~pHiTL~--g~~~~-~~~~~~~~l~~~~~~~------~ 76 (190)
++.+++|+ ++. ++.+.+..+++.+... .+.++.++||||. |+++. ..+++.+.+.+++... +
T Consensus 3 ~r~Fial~--~~~~~~~~~l~~~~~~l~~~~~~~~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (205)
T 2vfk_A 3 PNYFLSIP--ITNKKITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGK 80 (205)
T ss_dssp CCEEEEEE--CCCHHHHHHHHHHHHHHHHHCGGGGGGBCCTTCCEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCEEEEEE--CCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 87799997--4988999999999999973273668872786763899999976998999999999999899999970799
Q ss_pred CEEEEECEEEECCCEEEEEEEEEECC---CCCCCHHHHHHHH---HCC--CCCCCCCCEEEEEECCCCHHHHH----HH-
Q ss_conf 41699722652460001899983089---1411347888513---089--99999842257431789978999----99-
Q 029664 77 AYNCTVNRVATGTFFYQCVFLLLHPT---PEVAEPSSHCCGH---FGY--KSSTPYMPHLSLLYGDLTDDEKK----IA- 143 (190)
Q Consensus 77 pf~l~~~~v~~~~~~~~vi~l~v~~~---~~L~~L~~~~~~~---~g~--~~~~~f~PHiTLa~~~~~~~~~~----~~- 143 (190)
||.++++|+++|.. ++||++++++ +.|.+|++++++. +|+ .+.++|+|||||+|......... .+
T Consensus 81 pf~l~l~g~~~F~~--~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~~~~f~PHiTlar~~~~~~~~~~~~~~~~ 158 (205)
T 2vfk_A 81 HLTLPFHGIGTFQG--QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAGESRTFKPHLTFMKLSKAPMLWKKGVRKIE 158 (205)
T ss_dssp CCEEEEEEEEEETT--TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCBCCSSCCCCCEEEEEGGGCHHHHHTTCSSCC
T ss_pred CCEEEEECHHHCCC--CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCCCC
T ss_conf 82799864310798--4899950264307999999999999999869985778875168999725666123014556669
Q ss_pred HHHHHHCCCCCCCCCEEECEEEEEEEC-CCCCCCCCCEEEEEECCCCC
Q ss_conf 999973033359862793369999846-98887678148677707899
Q 029664 144 QEKAHKLDESIGSLSFPITRLQLWKTD-TEDTTLKSWEMVAECNLSPD 190 (190)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~~l~L~~~~-~~~~~~~~w~~l~~~~L~~~ 190 (190)
.+.+..+ .++....|+|++|.||++. ..+ ..+.|+++++|+|++.
T Consensus 159 ~~~l~~~-~~~~~~~~~v~~i~L~~~~~~~~-~~g~Y~~~~~~~L~~~ 204 (205)
T 2vfk_A 159 PGLYEQF-IDHRFGEEILYQIDLCSMLKKKQ-SNGYYHCESSIVIGEK 204 (205)
T ss_dssp GGGGGGG-TTCEEEEEECCEEEEEESSSCCC-TTSCCCEEEEEECSSC
T ss_pred HHHHHHH-CCCCCCEEEECEEEEEECCCCCC-CCCCEEEEEEEECCCC
T ss_conf 9999972-58867579957799997488889-9984777899960789
No 6
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=1.00 E-value=1 Score=50.20 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=96.5
Q ss_pred CEEEEEEECCHH--HHHHHHHHHHHHHHHCC------CCCCCCEEEEECCC-CC---------------CHHHHHHHHHH
Q ss_conf 237999939954--89999999998874219------99999907851687-68---------------94689999999
Q 029664 15 GFYSVWAIPPDE--VRARVKKLMEGLRSEFG------GPQFDPHVTVVGAM-SL---------------TADDALEKFKS 70 (190)
Q Consensus 15 ~~~slwl~P~~~--~~~~l~~~~~~l~~~~~------~~~~~pHiTL~g~~-~~---------------~~~~~~~~l~~ 70 (190)
.|++|.-.++++ ....+..+.+.|.+... .|+...|+||...+ +. ..+++...+.+
T Consensus 41 pGnTvI~~l~~~s~~~~~l~~iq~~L~~~~~~~~~~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~~~~~~~ 120 (243)
T 2fsq_A 41 PGNTVVCHLVEGSQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRD 120 (243)
T ss_dssp CEEEEEEEBCTTSHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99769875688975999999999999846245714507814522443063231434679997667641328999999999
Q ss_pred HHC---CCCCEEEEECEEEECCCEEEEEEEEEEC--CCCCCCHHHHHHHHHCCCC--CCCCCCEEEEEECC--CCHHHHH
Q ss_conf 861---4984169972265246000189998308--9141134788851308999--99984225743178--9978999
Q 029664 71 ACN---GLKAYNCTVNRVATGTFFYQCVFLLLHP--TPEVAEPSSHCCGHFGYKS--STPYMPHLSLLYGD--LTDDEKK 141 (190)
Q Consensus 71 ~~~---~~~pf~l~~~~v~~~~~~~~vi~l~v~~--~~~L~~L~~~~~~~~g~~~--~~~f~PHiTLa~~~--~~~~~~~ 141 (190)
.++ ...||.+++.++.. ..+......+ ...|.++++.+.+.+|+.. ...|..||||+|.. .+.++..
T Consensus 121 ~l~~~~~~~p~~~~v~~l~~----~~v~L~Pade~~~~~L~~~R~~l~q~lGi~~p~hd~y~fHITLgY~~~~l~~ee~~ 196 (243)
T 2fsq_A 121 RLSTFPTLPAFNMRVTGLRP----VGMVMKGATAEDDSIVALWRDTFADFFGYRHPDHDTYEFHITLSYIVSWFEPECLP 196 (243)
T ss_dssp HGGGCCCCCCCCEEEEEEET----TEEEEEESSHHHHHHHHHHHHHHHHHHTCCCTTGGGCCEEEECEEESSCBCGGGHH
T ss_pred HHHCCCCCCCEEEEEECCCC----CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHH
T ss_conf 98616678982799961404----56798619888999999999999999688878886637888878616789989999
Q ss_pred HHHHHHHHCCCCC---CCCCEEECEEEEEEECCCCCCCCCCEEEEEECCCC
Q ss_conf 9999997303335---98627933699998469888767814867770789
Q 029664 142 IAQEKAHKLDESI---GSLSFPITRLQLWKTDTEDTTLKSWEMVAECNLSP 189 (190)
Q Consensus 142 ~~~~~~~~~~~~~---~~~~~~v~~l~L~~~~~~~~~~~~w~~l~~~~L~~ 189 (190)
.+...+..+...+ .| .+++.+..+-.-. ++..|..+-.+.+.|
T Consensus 197 ~~~~~l~~~~~~l~~~~p-~i~l~~~efc~F~----DM~~F~~~~~l~~~~ 242 (243)
T 2fsq_A 197 RWQAMLDEELEKLRVAAP-VIQMRPPAFCEFK----DMNHFKELVVFDKRG 242 (243)
T ss_dssp HHHHHHHHHHHHHHHHCS-SCCBCCCEEEEES----STTCCEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHCC-EEEECCCCEEEEC----CHHHHHHHHHCCCCC
T ss_conf 999999999999985098-1564684468707----866627887146578
No 7
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=1.00 E-value=1 Score=26.60 Aligned_cols=68 Identities=19% Similarity=0.302 Sum_probs=35.8
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEE-CCCCC-CHHHHHHHHHHHHCCCCCEEEEECEEE
Q ss_conf 7999939954899999999988742199---9999907851-68768-946899999998614984169972265
Q 029664 17 YSVWAIPPDEVRARVKKLMEGLRSEFGG---PQFDPHVTVV-GAMSL-TADDALEKFKSACNGLKAYNCTVNRVA 86 (190)
Q Consensus 17 ~slwl~P~~~~~~~l~~~~~~l~~~~~~---~~~~pHiTL~-g~~~~-~~~~~~~~l~~~~~~~~pf~l~~~~v~ 86 (190)
-.||+-+.+. +.|..+.+.++..++. .+|.|||||. ..... ..+++.+.+.............++.+.
T Consensus 85 rvlw~~v~~~--~~L~~L~~~v~~~~g~~~~~~f~PHlTLar~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 157 (189)
T 1jh6_A 85 QCVFLLLQTT--PEVMEAGEHCKNHFNCSTTTPYMPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLA 157 (189)
T ss_dssp EEEEEEECCC--HHHHHHHHHHHHHTTCCCCSCCCCEEEEECCCCCHHHHHHHHHHHHHHCTTCTTCEEEEEEEE
T ss_pred EEEEEEECCC--HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 2899940699--899999999999709998777777388997239989999999999862457777858841899
No 8
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=1.00 E-value=1 Score=25.70 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=18.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECEEEE
Q ss_conf 9999907851687689468999999986149841699722652
Q 029664 45 PQFDPHVTVVGAMSLTADDALEKFKSACNGLKAYNCTVNRVAT 87 (190)
Q Consensus 45 ~~~~pHiTL~g~~~~~~~~~~~~l~~~~~~~~pf~l~~~~v~~ 87 (190)
.+|.|||||.-...... + +.....+|..+++.+.-
T Consensus 125 ~~f~PHiTLar~~~~~~-~-------l~~~l~~~~~~v~~~~L 159 (198)
T 1iuh_A 125 KPFKPHITLARRKAPAP-R-------VPPVLFGLEWPVEGFAL 159 (198)
T ss_dssp SCCCCEEEEEEESSCCC-C-------CCCCCCCEEEEECEEEE
T ss_pred CCCCCCEEEEECCCCCH-H-------HHHHHCCCEEEECEEEE
T ss_conf 99877287285167625-4-------78760586199047999
No 9
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=1.00 E-value=1 Score=13.12 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=13.5
Q ss_pred EEEEEECCCCCEEEEEEECC
Q ss_conf 24564079882379999399
Q 029664 5 ETVVVDKNKKGFYSVWAIPP 24 (190)
Q Consensus 5 ~~~~~~~~~~~~~slwl~P~ 24 (190)
.++.++.|.-.-|||| |.
T Consensus 12 ~~f~VlvN~E~QySLW--P~ 29 (74)
T 2pst_X 12 IQFQVVVNHEEQYSIW--PE 29 (74)
T ss_dssp SCEEEEEETTCCEEEE--ET
T ss_pred CEEEEEECCCCCCCCC--CC
T ss_conf 7289997489864117--48
No 10
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=12.46 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=0.0
Q ss_pred CC-CC-----EEEEEECCCCCEEEEEEECC
Q ss_conf 99-98-----24564079882379999399
Q 029664 1 ME-AP-----ETVVVDKNKKGFYSVWAIPP 24 (190)
Q Consensus 1 ~~-~~-----~~~~~~~~~~~~~slwl~P~ 24 (190)
|. || .++.+..|.-.-|||| |.
T Consensus 4 M~~npfdd~~~~f~VlvN~E~QySLW--P~ 31 (74)
T 2khr_A 4 MSTNPFDDDNGAFFVLVNDEDQHSLW--PV 31 (74)
T ss_dssp CCSCCCSCCCSCEEEEEETTCSCEEE--ET
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCC--CC
T ss_conf 75798889997189997488853108--37
Done!