Query 029665
Match_columns 190
No_of_seqs 120 out of 911
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 18:22:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029665.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2285-2289//hhsearch_pdb/029665hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_E 60S ribosomal protein L 1.0 1 1 446.1 12.9 178 9-186 1-178 (180)
2 4a17_D L21, RPL11, 60S ribosom 1.0 1 1 437.8 14.3 172 9-182 1-172 (172)
3 3j21_E 50S ribosomal protein L 1.0 1 1 425.7 10.3 172 13-184 14-186 (186)
4 1vq8_D 50S ribosomal protein L 1.0 1 1 423.1 11.8 171 10-182 5-176 (177)
5 2zkr_d 60S ribosomal protein L 1.0 1 1 418.4 10.5 177 9-185 1-178 (178)
6 3bbo_H Ribosomal protein L5; l 1.0 1 1 332.9 8.7 139 13-151 35-183 (220)
7 1iq4_A 50S ribosomal protein L 1.0 1 1 331.9 13.0 139 12-150 19-167 (179)
8 3r8s_F 50S ribosomal protein L 1.0 1 1 331.9 12.2 138 13-150 19-166 (177)
9 1mji_A 50S ribosomal protein L 1.0 1 1 331.7 12.9 140 11-150 21-170 (182)
10 1k3e_A CEST; chaperone, secret 1.0 1 1 16.1 -1.2 36 100-135 17-54 (156)
No 1
>3iz5_E 60S ribosomal protein L11 (L5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_E 3izc_E 3izs_E 3o58_K 3o5h_K 3u5e_J 3u5i_J 4b6a_J 1s1i_J 2noq_H 3j0q_k 3jyw_J
Probab=1.00 E-value=1 Score=446.05 Aligned_cols=178 Identities=90% Similarity=1.393 Sum_probs=172.3
Q ss_pred CCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHHH
Q ss_conf 35455457988750330799971277015789999999988619981998654045670013184687999986353899
Q 029665 9 QASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 88 (190)
Q Consensus 9 m~~~~~~~n~m~iP~ieKIvin~gvg~~~~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my~ 88 (190)
||.++..+|+|++|+|+|||||+|+|++++.|..|..+|++||||+|++|+||++|++||||+|+||||||||||++||+
T Consensus 1 ~~~~~~~~n~m~vPkI~KIvlN~gvGea~~~L~~A~~~L~~ITGQkPv~tkAKksia~FkiR~g~pIG~kVTLRG~~m~e 80 (180)
T 3iz5_E 1 MSTEKKQLNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTIRGEKAMQ 80 (180)
T ss_dssp CCCCTTTCCTTSSCEEEEEEEEEECCTTTSCSSTHHHHHHHHHSSCCEEECCCSCCSSSCCCSSSCCEEEEEECHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHH
T ss_conf 97542337975376777999982774467999999999998219960899701244445544898888999985288999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHH
Q ss_conf 99871043343323578899503786143320121100688973450799994226410110100147678983129587
Q 029665 89 LLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKED 168 (190)
Q Consensus 89 FL~kLirikdf~l~~~sfD~~GN~sFGi~e~~~FEi~yd~~~~i~Gm~Itivt~a~g~r~a~r~~~~~~i~~~h~i~~~e 168 (190)
||+||+|+|||+|+.++||++|||+|||+||++||++|||+++++||||+|+|++||||+++|++++++||++|||++||
T Consensus 81 FL~klirirdf~l~~~sFD~~GN~sfGI~E~i~Fei~yD~~~~i~GmdI~ivt~RpG~rv~~r~~~~~~i~~~hrv~kee 160 (180)
T 3iz5_E 81 LLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGMKYDPSTGIYGMDFFVVLERAGYRVSRRRRCKARVGIHQRVTKED 160 (180)
T ss_dssp HHHHHHHSSCSCCCSTTBCTTSCEEEECCTTSSSCCSSSCSCCCCCCEEEEEEECGGGHHHHSSSSCCCCCTTTSCCHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCHHEEEECCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCEECHHH
T ss_conf 99999965214467666389865655332000310013665676631699997688440211230347788551508999
Q ss_pred HHHHHHHHCCEEEECCCC
Q ss_conf 789967643589944766
Q 029665 169 AMKWFQVKYEGVILNKSQ 186 (190)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~ 186 (190)
||+|||++|+|+|+|+..
T Consensus 161 a~~~~~~~~~~~i~~~~~ 178 (180)
T 3iz5_E 161 AMKWFQVKYEGVILNKSH 178 (180)
T ss_dssp HHHHHHHSCC--------
T ss_pred HHHHHHHHCCEEECCCCC
T ss_conf 999998754889904676
No 2
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D
Probab=1.00 E-value=1 Score=437.82 Aligned_cols=172 Identities=66% Similarity=1.094 Sum_probs=167.3
Q ss_pred CCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHHH
Q ss_conf 35455457988750330799971277015789999999988619981998654045670013184687999986353899
Q 029665 9 QASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 88 (190)
Q Consensus 9 m~~~~~~~n~m~iP~ieKIvin~gvg~~~~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my~ 88 (190)
|++ ..+|+|++|+|+|||||+|+|++++.|..|..+|++||||+|++|+||+++++||||+|+||||||||||++||+
T Consensus 1 ~~~--~~~n~m~vPkI~KIvlN~gvgea~~~L~~A~~~L~~ITGQkPv~tkAKksi~~FkiR~g~pIG~kVTLRG~~m~e 78 (172)
T 4a17_D 1 MTD--KKENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARD 78 (172)
T ss_dssp -----CCCCGGGCCEEEEEEEEEECCCSSHHHHHHHHHHHHHHSSCCEEEEECSCBTTTTBCSSEEEEEEEEECHHHHHH
T ss_pred CCC--CCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCHHHHH
T ss_conf 984--458964376777999982867889999999999987009960898702353456534797888899985288999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHH
Q ss_conf 99871043343323578899503786143320121100688973450799994226410110100147678983129587
Q 029665 89 LLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKED 168 (190)
Q Consensus 89 FL~kLirikdf~l~~~sfD~~GN~sFGi~e~~~FEi~yd~~~~i~Gm~Itivt~a~g~r~a~r~~~~~~i~~~h~i~~~e 168 (190)
||+||+|+|||+|+.++||++|||+|||+||++||++|||+++++||||+|+|++||||+++|++++++||++|||++||
T Consensus 79 FL~kllrirdf~l~~~sFD~~GN~sfGi~e~i~Fei~yD~~~~i~GmdI~ivt~rpG~rv~~r~~~~~~i~~~hrv~kee 158 (172)
T 4a17_D 79 ILTRGLKVKEMELRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRVARRRRATSRVGNNQMISKEE 158 (172)
T ss_dssp HHHHHHHHTTTEECGGGBCTTSCEEEEECCGGGGTCCCCGGGCCCCEEEEEEEECGGGHHHHCSTTCCCCCTTTSCCHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCEECHHH
T ss_conf 99999864114477767489854787666020023224665676631699997688440301130358788551518999
Q ss_pred HHHHHHHHCCEEEE
Q ss_conf 78996764358994
Q 029665 169 AMKWFQVKYEGVIL 182 (190)
Q Consensus 169 ~~~~~~~~~~~~~~ 182 (190)
||+|||++|+|+++
T Consensus 159 a~~~~~~~~~~~~~ 172 (172)
T 4a17_D 159 CINWFKTEFEGNVY 172 (172)
T ss_dssp HHHHHHHHHCCEEC
T ss_pred HHHHHHHHCCEEEC
T ss_conf 99999976086959
No 3
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=425.68 Aligned_cols=172 Identities=45% Similarity=0.776 Sum_probs=167.5
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHHHHHHH
Q ss_conf 54579887503307999712770157899999999886199819986540456700131846879999863538999987
Q 029665 13 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES 92 (190)
Q Consensus 13 ~~~~n~m~iP~ieKIvin~gvg~~~~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my~FL~k 92 (190)
++++|+|++|+|+||+||+|+|++++.|..|..+|++||||+|++|+||+++++||||+|+|+||||||||++||+||+|
T Consensus 14 ~~~~N~m~vPkI~KIvlN~gvgea~~~L~~a~~~Le~ITGQkPv~tkAKksia~FkiRkg~pIG~kVTLRG~~myeFL~r 93 (186)
T 3j21_E 14 DWEAHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKR 93 (186)
T ss_dssp HHHHCTTSSCEEEEEEEEECSCCCTTSCCSHHHHHHHHHSSCCEEECCCSCCSSSCCSTTCCCEEEEEECSHHHHHHHHH
T ss_pred HCCCCCHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 51299224367669999737626889999999999996399757987234520047579991256999817049999999
Q ss_pred HHCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 104334332357889950378614332012-1100688973450799994226410110100147678983129587789
Q 029665 93 GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMK 171 (190)
Q Consensus 93 Lirikdf~l~~~sfD~~GN~sFGi~e~~~F-Ei~yd~~~~i~Gm~Itivt~a~g~r~a~r~~~~~~i~~~h~i~~~e~~~ 171 (190)
|+.+.||.|+.++||++|||+|||+||++| |++|||+++++||||+|+|+|||||+++|++++++||++|||++||||+
T Consensus 94 ll~v~d~gl~~~sFD~~GN~sfGi~E~i~FPeI~yD~~~~i~GmdI~ivt~rpG~rv~~r~~~~~~i~~~hrv~keea~~ 173 (186)
T 3j21_E 94 LLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMV 173 (186)
T ss_dssp HHHHSCSSBCSSSBCTTSCEEECCCSCCCCTTTSSCSSCCCCCCEEEEEEECSTTHHHHSSTTCCCCCSTTSCCHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEECHHHHHH
T ss_conf 99986448884563887427876740154665554554542311289996587331030121467688662668999999
Q ss_pred HHHHHCCEEEECC
Q ss_conf 9676435899447
Q 029665 172 WFQVKYEGVILNK 184 (190)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (190)
|||++|||+|+.+
T Consensus 174 ~~~~~~~~~v~~~ 186 (186)
T 3j21_E 174 YMMEEFGVEIVEG 186 (186)
T ss_dssp HHHHHSSCBCCBC
T ss_pred HHHHHCCEEEECC
T ss_conf 9998748798349
No 4
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=1.00 E-value=1 Score=423.08 Aligned_cols=171 Identities=36% Similarity=0.672 Sum_probs=165.7
Q ss_pred CCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHHHH
Q ss_conf 54554579887503307999712770157899999999886199819986540456700131846879999863538999
Q 029665 10 ASDKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQL 89 (190)
Q Consensus 10 ~~~~~~~n~m~iP~ieKIvin~gvg~~~~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my~F 89 (190)
|+++.++|+|++|+|+||+||+|+|++++.|..|..+|++||||+|++|+||+|+++||||+|+||||||||||++||+|
T Consensus 5 ~~~~~~~N~m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkg~pIG~kVTLRG~~myeF 84 (177)
T 1vq8_D 5 SESGGDFHEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEF 84 (177)
T ss_dssp ------CCTTTSCEEEEEEEEEECCC-----CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTHHHHHH
T ss_pred CCCCCCCCCHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHH
T ss_conf 55644488002677779999768645889999999999997299717886244533345358986679999750889999
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHH
Q ss_conf 987104334332357889950378614332012-1100688973450799994226410110100147678983129587
Q 029665 90 LESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKED 168 (190)
Q Consensus 90 L~kLirikdf~l~~~sfD~~GN~sFGi~e~~~F-Ei~yd~~~~i~Gm~Itivt~a~g~r~a~r~~~~~~i~~~h~i~~~e 168 (190)
|+||+++|| ++.++||++|||+|||+||++| |++||++++++||||+|+|+|||||+++|+|++++||++|||++||
T Consensus 85 L~rllrvrd--l~~~sfd~~GN~sfGi~e~i~FPEI~yD~~~~i~GmdI~ivt~rpG~rv~~r~~~~~~i~~~hr~~k~e 162 (177)
T 1vq8_D 85 LQTALPLAE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPAD 162 (177)
T ss_dssp HHHHGGGSC--CCGGGBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTCCCCCGGGSCCHHH
T ss_pred HHHHHHHCC--CCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCEECHHH
T ss_conf 999987415--774455887548881460002766442656772562289996798530656413036689885767999
Q ss_pred HHHHHHHHCCEEEE
Q ss_conf 78996764358994
Q 029665 169 AMKWFQVKYEGVIL 182 (190)
Q Consensus 169 ~~~~~~~~~~~~~~ 182 (190)
||+||+++|+|+|+
T Consensus 163 a~~~~~~~~~~~i~ 176 (177)
T 1vq8_D 163 AVAFIESTYDVEVS 176 (177)
T ss_dssp HHHHHHTTTSCCC-
T ss_pred HHHHHHHHCCEEEE
T ss_conf 99999886197981
No 5
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=1.00 E-value=1 Score=418.43 Aligned_cols=177 Identities=69% Similarity=1.140 Sum_probs=170.3
Q ss_pred CCCC-CCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHH
Q ss_conf 3545-545798875033079997127701578999999998861998199865404567001318468799998635389
Q 029665 9 QASD-KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAM 87 (190)
Q Consensus 9 m~~~-~~~~n~m~iP~ieKIvin~gvg~~~~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my 87 (190)
|++. +..+|+|++|+|+||+||+|+|++++.|..|..+|++||||+|++|+||+|+++||||+|+||||||||||++||
T Consensus 1 m~~~~~~~~n~m~vPki~KIvln~gvgea~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiR~g~pIG~kVTLRG~~my 80 (178)
T 2zkr_d 1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAE 80 (178)
T ss_dssp ---------CTTTSCEEEEEEEEECCSSSCSSSCTTHHHHHHHHSSCCEEECCCSCCSSSCCCSSSCCEEEEEECHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCHHHH
T ss_conf 97654244881016677799997785168899999999999986997288742555344665689888899998528899
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHH
Q ss_conf 99987104334332357889950378614332012110068897345079999422641011010014767898312958
Q 029665 88 QLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKE 167 (190)
Q Consensus 88 ~FL~kLirikdf~l~~~sfD~~GN~sFGi~e~~~FEi~yd~~~~i~Gm~Itivt~a~g~r~a~r~~~~~~i~~~h~i~~~ 167 (190)
+||+||+.+|||+++.++||++|||+|||+||++||++||++++++||||+|+++++|++.++|++++++||++|||++|
T Consensus 81 eFL~rll~vrdf~l~~~sfd~~GN~sfGi~E~i~FEi~yD~~~~i~GmdItivL~~~G~pf~~r~~~~~~i~~~hr~~k~ 160 (178)
T 2zkr_d 81 EILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKE 160 (178)
T ss_dssp HHHHHHHHHSCSCBCTTTBCTTSCEEESSSSCSSSSCCCSSSCCSSCEEEEEEEECTTTHHHHSSSSCCCCCTTTSCCHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEECHH
T ss_conf 99999985225624666758874577711210441346656677267647999758983775032005557998648799
Q ss_pred HHHHHHHHHCCEEEECCC
Q ss_conf 778996764358994476
Q 029665 168 DAMKWFQVKYEGVILNKS 185 (190)
Q Consensus 168 e~~~~~~~~~~~~~~~~~ 185 (190)
|||+||+++|+|+|+|++
T Consensus 161 e~~~~~~~~~~~~i~~~~ 178 (178)
T 2zkr_d 161 EAMRWFQQKYDGIILPGK 178 (178)
T ss_dssp HHHHHHHTTTCCBC----
T ss_pred HHHHHHHHHCCEEEECCC
T ss_conf 999999875788981699
No 6
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=1.00 E-value=1 Score=332.85 Aligned_cols=139 Identities=24% Similarity=0.393 Sum_probs=133.1
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHHHH
Q ss_conf 5457988750330799971277015---7899999999886199819986540456700131846879999863538999
Q 029665 13 KKLSNPMREIKVQKLVLNISVGESG---DRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQL 89 (190)
Q Consensus 13 ~~~~n~m~iP~ieKIvin~gvg~~~---~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my~F 89 (190)
.+|+|+|++|+|+||+||+|+|+++ +.|..|..+|++||||+|++|+||++|++||||+|+||||||||||++||+|
T Consensus 35 ~~y~N~m~vPki~KIvin~gvgea~~d~k~L~~A~~~L~~ITGQkPv~tkAKksIa~FkiRkg~pIG~kVTLRG~~MyeF 114 (220)
T 3bbo_H 35 FSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSF 114 (220)
T ss_dssp SCCCCSSSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCCCCBCCSCCCSSCCCTTCBCCCCCEECTHHHHHH
T ss_pred HCCCCCCCCCEEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHH
T ss_conf 46898333756789999726615542568999999999998599747750245654455347986578999743889999
Q ss_pred HHHHH-----CCCCCC-CCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf 98710-----433433-2357889950378614332012-11006889734507999942264101101
Q 029665 90 LESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGRR 151 (190)
Q Consensus 90 L~kLi-----rikdf~-l~~~sfD~~GN~sFGi~e~~~F-Ei~yd~~~~i~Gm~Itivt~a~g~r~a~r 151 (190)
|+||+ |+|||+ ++.++||++|||+|||+||++| |++||++++++||||+|+|+|+++..++.
T Consensus 115 Ldrll~iaLPRirdf~Gl~~~sFD~~GN~sfGi~e~~~FPEI~yD~~~~i~GmdItivTtA~td~ea~~ 183 (220)
T 3bbo_H 115 LDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAYK 183 (220)
T ss_dssp HHHHHHSSTTTSSSCCCCCCSCCCSSSEEEEEECSCCCCSSCCTTSCSSCCCEEEEEEESCSSGGGTHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
T ss_conf 999998744022343456733458875387831622357774337667826605999954499899999
No 7
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=1.00 E-value=1 Score=331.92 Aligned_cols=139 Identities=26% Similarity=0.527 Sum_probs=131.9
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHHH
Q ss_conf 5545798875033079997127701---5789999999988619981998654045670013184687999986353899
Q 029665 12 DKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQ 88 (190)
Q Consensus 12 ~~~~~n~m~iP~ieKIvin~gvg~~---~~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my~ 88 (190)
+.+|+|+|++|+|+||+||+|+|++ .+.|..|..+|++||||+|++|+||++|++||||+|+||||||||||++||+
T Consensus 19 k~~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~FkiR~g~pIG~kVTLRg~~my~ 98 (179)
T 1iq4_A 19 KFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYE 98 (179)
T ss_dssp HHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCCTTCEEEEEEEECHHHHHH
T ss_pred HHCCCCCCCCCEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHH
T ss_conf 85899822284447999994485221076899999999999869971785125554445544798368999976288999
Q ss_pred HHHHHH-----CCCCCC-CCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 998710-----433433-2357889950378614332012-1100688973450799994226410110
Q 029665 89 LLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGR 150 (190)
Q Consensus 89 FL~kLi-----rikdf~-l~~~sfD~~GN~sFGi~e~~~F-Ei~yd~~~~i~Gm~Itivt~a~g~r~a~ 150 (190)
||+||+ |+|||+ ++.++||++|||+|||+||++| |++||++++++||||+|+|+|+++..++
T Consensus 99 FL~rll~v~lPrirdf~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD~~~~i~GmdI~ivtta~td~ea~ 167 (179)
T 1iq4_A 99 FLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTDEEAR 167 (179)
T ss_dssp HHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESCSSHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCEEEEEEEECCHHHHH
T ss_conf 999999874600025444774445888638880333203766422656782676389995109989999
No 8
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=1.00 E-value=1 Score=331.87 Aligned_cols=138 Identities=31% Similarity=0.563 Sum_probs=132.0
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHHHH
Q ss_conf 5457988750330799971277015---7899999999886199819986540456700131846879999863538999
Q 029665 13 KKLSNPMREIKVQKLVLNISVGESG---DRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQL 89 (190)
Q Consensus 13 ~~~~n~m~iP~ieKIvin~gvg~~~---~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my~F 89 (190)
.+|+|+|++|+|+||+||+|+|+++ +.|..|..+|++||||+|++|+||+|+++||||+|+||||||||||++||+|
T Consensus 19 ~~y~N~m~vP~i~KIvln~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksi~~FkiR~g~piG~kVTLRg~~m~~F 98 (177)
T 3r8s_F 19 FNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEF 98 (177)
T ss_dssp HTCSSTTSSCCEEEEEEBCCCCCTTSCHHHHHHHHHHHHHHSSSCCEEEECSSCBGGGTBCTTCEEEEEEEECSHHHHHH
T ss_pred HCCCCCCCCCEEEEEEEEECCCHHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHHHH
T ss_conf 18998411645569999954843430779999999999996699746751444423478779988457999761889999
Q ss_pred HHHHH-----CCCCCC-CCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 98710-----433433-2357889950378614332012-1100688973450799994226410110
Q 029665 90 LESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGR 150 (190)
Q Consensus 90 L~kLi-----rikdf~-l~~~sfD~~GN~sFGi~e~~~F-Ei~yd~~~~i~Gm~Itivt~a~g~r~a~ 150 (190)
|+||+ |+|||+ ++.++||++|||+|||+||++| |++||++++++||||+|+|+|+++..|+
T Consensus 99 L~kli~~vlPrirdf~Gl~~~sfd~~GN~~fGi~e~~~FPEi~yD~~~~i~GmdI~ivtta~td~ea~ 166 (177)
T 3r8s_F 99 FERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGR 166 (177)
T ss_dssp HHHHHHTTTTTSTTCCCCCTTCBCSSSCEECCCSCGGGSSSSCSSSCCSCCCCBCEEEESCSSHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHH
T ss_conf 99999973302223455672125888637661151456877653666782530699996769879999
No 9
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=1.00 E-value=1 Score=331.72 Aligned_cols=140 Identities=27% Similarity=0.469 Sum_probs=132.3
Q ss_pred CCCCCCCCCCCEEEEEEEEECCCCCH---HHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCEEEEEEEECCHHHH
Q ss_conf 45545798875033079997127701---578999999998861998199865404567001318468799998635389
Q 029665 11 SDKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAM 87 (190)
Q Consensus 11 ~~~~~~n~m~iP~ieKIvin~gvg~~---~~~L~~a~~~L~~ITGQkP~~t~AKksi~~FkiRkG~piG~KVTLRg~~my 87 (190)
++.+|+|+|++|+|+||+||+|+|++ .+.|..|..+|++||||+|++|+||++|++||||+|+||||||||||++||
T Consensus 21 ~kf~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~FkiR~g~pIG~kVTLRg~~my 100 (182)
T 1mji_A 21 RRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMW 100 (182)
T ss_dssp HHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCSSSSCCSEEEEEEEECHHHHH
T ss_pred HHHCCCCCCCCCEEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCHHHH
T ss_conf 98689985327635699998178501007689999999999985997077622545444564579814799997537799
Q ss_pred HHHHHHH-----CCCCCC-CCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 9998710-----433433-2357889950378614332012-1100688973450799994226410110
Q 029665 88 QLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRVGR 150 (190)
Q Consensus 88 ~FL~kLi-----rikdf~-l~~~sfD~~GN~sFGi~e~~~F-Ei~yd~~~~i~Gm~Itivt~a~g~r~a~ 150 (190)
+||+||+ |+|||+ ++.++||++|||+|||+||++| |++||++++++||||+|+|+|+++..++
T Consensus 101 ~FL~rll~v~lPrirdf~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD~~~~i~GmdItivtta~td~ea~ 170 (182)
T 1mji_A 101 IFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEAR 170 (182)
T ss_dssp HHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEEESCSSHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
T ss_conf 9999999874601034344674445888638880243204776533666782676389995119989999
No 10
>1k3e_A CEST; chaperone, secretion, type III, intimin receptor; 2.80A {Escherichia coli} SCOP: d.198.1.1
Probab=1.00 E-value=1 Score=16.14 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=22.2
Q ss_pred CCCCCCCCCCEEEEECCCCCCCC--CCCCCCCCCCCCC
Q ss_conf 32357889950378614332012--1100688973450
Q 029665 100 ELLRRNFSDTGCFGFGIQEHIDL--GIKYDPSTGIYGM 135 (190)
Q Consensus 100 ~l~~~sfD~~GN~sFGi~e~~~F--Ei~yd~~~~i~Gm 135 (190)
.|+.=+||..|...+.|++.+.. +..-|....++|+
T Consensus 17 GLp~L~fDeng~C~L~IDd~i~i~l~~~~d~~l~L~g~ 54 (156)
T 1k3e_A 17 GIGSISFNENRLCSFAIDEIYYISLSDANDEYMMIYGV 54 (156)
T ss_dssp SCCCCCCCTTSCCEEEECCCCEEEEECCSSSEEEEEEE
T ss_pred CCCCCCCCCCCCEEEEECCEEEEEEEECCCCCEEEEEE
T ss_conf 99975358898279997894899999769994999987
Done!