RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 029665
(190 letters)
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 165
Score = 165 bits (418), Expect = 4e-53
Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 3/163 (1%)
Query: 17 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 76
+ MRE +++K+V+++ +G G L A +L +++GQ PV +KA+ TV F IR + I
Sbjct: 2 HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIG 61
Query: 77 CYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHID-LGIKYDPSTGIYGM 135
VT+R + A + L++ L + E L F DTG F FG++EH + +YDPS GIYG+
Sbjct: 62 AKVTLRDEMAEEFLQTALPLAE--LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGL 119
Query: 136 DFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYE 178
D V L RPGYRV +R + + +HR+ DA+ + + Y+
Sbjct: 120 DVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYD 162
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 177
Score = 96.6 bits (240), Expect = 3e-26
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
Query: 14 KLSNPMREIKVQKLVLNISVG---ESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIR 70
S+ M +++K+V+N +G E + +AAK L ++ Q P+ +KA+ ++ +F +R
Sbjct: 19 GYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLR 78
Query: 71 RNEKIACYVTVRGDKAMQLLESGLKVKEYELLR------RNFSDTGCFGFGIQEHIDL-G 123
+ + VT+RG++ LE + + + F G + GI+E +
Sbjct: 79 QGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPE 138
Query: 124 IKYDPSTGIYGMDFFVVLERPGYRVGRR 151
I YD GMD +V R
Sbjct: 139 ITYDMVDKTRGMDITIVTTAKTDEEARA 166
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 179
Score = 96.9 bits (241), Expect = 3e-26
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 14 KLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIR 70
+ M+ K++K+V+N+ VG++ L A + L ++GQ PV ++A+ ++ F +R
Sbjct: 21 NYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR 80
Query: 71 RNEKIACYVTVRGDKAMQLLESGLKVKEYE------LLRRNFSDTGCFGFGIQEHIDL-G 123
+ I VT+RG++ + L+ + V + +++F G + GI+E +
Sbjct: 81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPE 140
Query: 124 IKYDPSTGIYGMDFFVVL 141
I YD + GMD +V
Sbjct: 141 IDYDKVNKVRGMDIVIVT 158
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus
[TaxId: 274]}
Length = 180
Score = 94.6 bits (235), Expect = 2e-25
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 14 KLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIR 70
N +++K+V+N +GE+ + L +AA+ L ++GQ P ++A+ ++ +F +R
Sbjct: 22 GYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLR 81
Query: 71 RNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLRRNFSD-TGCFGFGIQEHIDL-G 123
+ I VT+R D+ LE L +++++ L N D G + G++E +
Sbjct: 82 KGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPE 141
Query: 124 IKYDPSTGIYGMDFFVVLERPGYRVGR 150
I YD + GMD VV R
Sbjct: 142 ITYDMVDALRGMDIAVVTTAETDEEAR 168
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
[TaxId: 562]}
Length = 177
Score = 80.8 bits (199), Expect = 4e-20
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 14 KLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIR 70
++ M+ +V+K+ LN+ VGE+ L AA L +SGQ P+ +KAR +V F IR
Sbjct: 19 NYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR 78
Query: 71 RNEKIACYVTVRGDKAMQLLESGLKVKEYE------LLRRNFSDTGCFGFGIQEHIDL-G 123
+ I C VT+RG++ + E + + L ++F G + G++E I
Sbjct: 79 QGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPE 138
Query: 124 IKYDPSTGIYGMDFFVV 140
I YD + G+D +
Sbjct: 139 IDYDKVDRVRGLDITIT 155
>d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione
synthetase ATP-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 373
Score = 26.7 bits (59), Expect = 2.0
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 91 ESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGR 150
+K E+ + +F+ + +++ KYDP IY D +V+ GY + +
Sbjct: 134 TEQIKQVEFNTVSVSFAGLSEKVDRLHSYLNRANKYDPKGPIYN-DQNMVISDSGYLLSK 192
Query: 151 RRRCK------SRVGIQHRVTKEDAMKWF 173
+ IQ +T E + +
Sbjct: 193 ALAKAVESYKSQQKKIQQLLTDEGVLGKY 221
>d1stza2 d.110.2.3 (A:101-336) Heat-inducible transcription
repressor HrcA, C-terminal domain {Thermotoga maritima
[TaxId: 2336]}
Length = 236
Score = 25.3 bits (55), Expect = 4.3
Identities = 4/39 (10%), Positives = 13/39 (33%)
Query: 29 LNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSF 67
++ + + L A +L +L+ + +
Sbjct: 9 KSMPLADPEKVLFLAGNLLARLTEGYVLIERPNTRDLKI 47
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 266
Score = 25.0 bits (54), Expect = 6.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 76 ACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 125
+ KA L ++G++ E+ RR Q+ I GI
Sbjct: 5 ENQLEQAEKKAETLFDNGIRFSEFGTRRR-------RSLKAQDLIMQGIM 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.406
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 714,307
Number of extensions: 32622
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 10
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)