Query 029666
Match_columns 190
No_of_seqs 193 out of 1056
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 18:27:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029666.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2285-2289//hhsearch_pdb/029666hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_F RP14, S2, YS8, 40S ribo 1.0 1 1 439.9 13.4 186 2-190 23-208 (225)
2 2zkq_g 40S ribosomal protein S 1.0 1 1 430.8 0.0 186 1-189 1-186 (204)
3 2xzm_G Ribosomal protein S7 co 1.0 1 1 419.2 18.3 173 14-186 6-178 (200)
4 1iqv_A Ribosomal protein S7; R 1.0 1 1 413.6 15.8 185 1-190 1-201 (218)
5 3r8n_G 30S ribosomal protein S 1.0 1 1 266.8 13.7 125 59-190 9-133 (151)
6 1rss_A Ribosomal protein S7; R 1.0 1 1 265.7 15.9 122 61-189 7-128 (151)
7 1hus_A Ribosomal protein S7; R 1.0 1 1 265.5 15.0 123 60-189 10-132 (155)
8 3i1m_G 30S ribosomal protein S 1.0 1 1 265.2 14.5 124 59-189 10-133 (179)
9 3bbn_G Ribosomal protein S7; s 1.0 1 1 263.8 8.8 123 60-189 11-133 (155)
10 3gty_S TF, 30S ribosomal prote 1.0 1 1 262.7 14.7 121 62-189 6-126 (149)
No 1
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F
Probab=1.00 E-value=1 Score=439.92 Aligned_cols=186 Identities=67% Similarity=1.042 Sum_probs=172.6
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 52221478999999875310001258940451788631000034565313204898765446555576057798989641
Q 029666 2 ATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMM 81 (190)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~klf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM~ 81 (190)
+.++...|.+......++|||||||++||+|+||||++||+++ +++|+|||+|||++|+|+|++||+++||||+||+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~---~~~~~pht~gr~~~krf~K~~~piv~rliN~LM~ 99 (225)
T 3u5c_F 23 VVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVR---QPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMM 99 (225)
T ss_dssp CCCSSCCCHHHHHHHHSSCCSSSCCCSSCCCSSTTTBTTBCCC---SCCSSSCCCCCCSSSTTGGGGSCHHHHHHHHHSC
T ss_pred HHHCCCCCHHHHCCCHHHHHCCCCCCCCEEEECCCHHHEEECC---CCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 5202446533320112204217877766388156445215346---7704154578755557788898499999999975
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 68767508899999999999999640788579999999925774004773069935797112484678999999999999
Q 029666 82 HGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGA 161 (190)
Q Consensus 82 ~~~~~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~~vpv~isp~Rr~~lAirwI~~~a 161 (190)
+|+|+|||++|++||++||++|+++|++||++||++||+|++|++|++|+|+||++|||||+|+|.||+++|||||+++|
T Consensus 100 ~~~~~GKKs~A~~Ivy~AfeiI~~kT~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqVPVeV~p~Rr~~LAiRWIi~aa 179 (225)
T 3u5c_F 100 NGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGA 179 (225)
T ss_dssp SGGGSSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 37557849999999999999999865897120899999967997267875469888998445588888999999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 73047997748999999999997089999
Q 029666 162 RESAFRNIKTIAECLADELINAAKGSSNR 190 (190)
Q Consensus 162 r~~~~r~~k~~~e~LA~EiI~A~~~~g~~ 190 (190)
++++||++++|++|||+|||+|++|+|+|
T Consensus 180 rk~~~R~~ksmaerLA~ELidAa~~~G~s 208 (225)
T 3u5c_F 180 REAAFRNIKTIAETLAEELINAAKGSSTS 208 (225)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHTTCSSS
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 86156788989999999999999678940
No 2
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}
Probab=1.00 E-value=1 Score=430.76 Aligned_cols=186 Identities=75% Similarity=1.130 Sum_probs=172.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 95222147899999987531000125894045178863100003456531320489876544655557605779898964
Q 029666 1 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM 80 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~klf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM 80 (190)
|++...+.|.. ...+++|||||||++||+|+||||++||+++ .|+++++|||+|||++++|+|++||+|++|||+||
T Consensus 1 m~~~~~~~~~~--~~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~-~~~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM 77 (204)
T 2zkq_g 1 MTEWETAAPAV--AETPDIKLFGKWSTDDVQINDISLQDYIAVK-EKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMM 77 (204)
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 16876750889999999999999964078857999999992577400477306993579711248467899999999999
Q 029666 81 MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTG 160 (190)
Q Consensus 81 ~~~~~~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~~vpv~isp~Rr~~lAirwI~~~ 160 (190)
++|+|+|||++|++|||+||++|+.+|++||++||++||+|++|++|++++++||++|||||+|+|.||+++||+||+++
T Consensus 78 ~~g~n~GKKs~A~~Ivy~A~~~I~~kt~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ 157 (204)
T 2zkq_g 78 MHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTG 157 (204)
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 97304799774899999999999708999
Q 029666 161 ARESAFRNIKTIAECLADELINAAKGSSN 189 (190)
Q Consensus 161 ar~~~~r~~k~~~e~LA~EiI~A~~~~g~ 189 (190)
|++++||++++|++|||+|||+|++|+|+
T Consensus 158 ar~~~~R~~k~m~e~LA~ElidAa~~~g~ 186 (204)
T 2zkq_g 158 AREAAFRNIKTIAECLADELINAAKGSSN 186 (204)
No 3
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T
Probab=1.00 E-value=1 Score=419.16 Aligned_cols=173 Identities=57% Similarity=0.996 Sum_probs=168.2
Q ss_pred CCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 99875310001258940451788631000034565313204898765446555576057798989641687675088999
Q 029666 14 QPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAV 93 (190)
Q Consensus 14 ~~~~~~klf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM~~~~~~GKK~~A~ 93 (190)
.+..++|||||||++||+|+||||++||+++..|+++++|||+|||++++|+++++|+|++|||+||++|||+|||++|+
T Consensus 6 ~~~~~~~lf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~ 85 (200)
T 2xzm_G 6 GFATQPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALCI 85 (200)
T ss_dssp ---CCCCGGGSCCGGGCCCCSSSGGGSCSTTCTTTCCSSSCCCCCCSSSSSGGGGSCHHHHHHHHHSCSTTTCCCHHHHH
T ss_pred CCCHHCCCCCCCCCCCEEECCCCHHHCEEECCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 14300102077677773662665442042024567603678722010355661259699999999702787787799999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999999999640788579999999925774004773069935797112484678999999999999730479977489
Q 029666 94 RIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIKTIA 173 (190)
Q Consensus 94 ~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~~vpv~isp~Rr~~lAirwI~~~ar~~~~r~~k~~~ 173 (190)
+||++||++|+.+|++||++||++||+|++|++|++++++||++|||||+|+|.||+++||+||+++|++++||++++|+
T Consensus 86 ~Iv~~A~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~ 165 (200)
T 2xzm_G 86 KVVKNAFEIIHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIA 165 (200)
T ss_dssp HHHHHHHHHHHHHHCSCTHHHHHHHHHHSSCSEEEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999999999871899589999999817896478985229878998457889999999999999999860466878699
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999999708
Q 029666 174 ECLADELINAAKG 186 (190)
Q Consensus 174 e~LA~EiI~A~~~ 186 (190)
+|||+|||+|++|
T Consensus 166 e~LA~EiidAa~~ 178 (200)
T 2xzm_G 166 ETLADEIINAEKN 178 (200)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999848
No 4
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1
Probab=1.00 E-value=1 Score=413.64 Aligned_cols=185 Identities=41% Similarity=0.568 Sum_probs=174.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 95222147899999987531000125894045178863100003456531320489876544655557605779898964
Q 029666 1 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM 80 (190)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~klf~kw~~~~v~v~d~~l~~yi~~~~~k~~~~~pht~gr~~~k~f~k~~~piverliN~LM 80 (190)
|.||..+.|.+.. ...++|||||||++||+|.||||.+||+++ |.++|||+|||++++|+++++++|+||||.||
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~lf~kws~~dv~v~dp~l~~yi~~~----p~~~Pht~gr~~~k~f~k~~~~iV~rliN~lM 75 (218)
T 1iqv_A 1 MKEVAKPLQERFF-IPHEIKVMGRWSTEDVEVKDPSLKPYINLE----PRLLPHTHGRHAKKHFGKANVHIVERLINKVM 75 (218)
T ss_dssp ------------------CCBTTTBCCTTCCCCCTTTGGGSBCS----CC------------------CBHHHHHHHHHH
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCHHHHCCCC----CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9520126754323-444340226655878866577324320237----75687842178862035046869999985752
Q ss_pred C---------------CCC-CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEC
Q ss_conf 1---------------687-675088999999999999996407885799999999257740047730699357971124
Q 029666 81 M---------------HGR-NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDI 144 (190)
Q Consensus 81 ~---------------~~~-~~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~~vpv~i 144 (190)
+ +|| |+|||++|++||++||++|+++|++||++||++||+|++|++|++++++||++|||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~r~n~GKK~~A~~Iv~~Af~iI~~~t~~nPl~Vl~~Ai~N~~P~~ev~~~r~GG~~yqvPV~V 155 (218)
T 1iqv_A 76 RSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDI 155 (218)
T ss_dssp TTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEC
T ss_conf 34665553333200145777898799999999999999998748995899999998279964778852398789971378
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 8467899999999999973047997748999999999997089999
Q 029666 145 SPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNR 190 (190)
Q Consensus 145 sp~Rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~~ 190 (190)
+|.||+++||+||+++|++++||++++|++|||+|||+|++|+|+|
T Consensus 156 ~p~Rr~~lAirwI~~~ar~~~~R~~ksm~e~LA~Eii~Aa~~~g~s 201 (218)
T 1iqv_A 156 SPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKS 201 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8999999999999999976036687859999999999998489974
No 5
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=1.00 E-value=1 Score=266.76 Aligned_cols=125 Identities=26% Similarity=0.327 Sum_probs=118.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEE
Q ss_conf 65446555576057798989641687675088999999999999996407885799999999257740047730699357
Q 029666 59 YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVR 138 (190)
Q Consensus 59 ~~~k~f~k~~~piverliN~LM~~~~~~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~ 138 (190)
..-.+.++|+||+|++|||+||+ +|||++|++||++||++|+.+|++||++||++||+|++|++|+++.++||++|
T Consensus 9 r~~~~dp~~~~~lv~kliN~lM~----~GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~ty 84 (151)
T 3r8n_G 9 RKILPDPKFGSELLAKFVNILMV----DGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTY 84 (151)
T ss_dssp CCCCCCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHHHCCSEEECCCCCSSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCEEE
T ss_conf 87899987698899999999886----55499999999999999998817987999999999669976889884098789
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9711248467899999999999973047997748999999999997089999
Q 029666 139 RQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSNR 190 (190)
Q Consensus 139 ~vpv~isp~Rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~~ 190 (190)
||||+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|.+
T Consensus 85 qvPv~v~~~Rr~~lAirWii~~ar~---r~~k~m~~~LA~ElidA~~~~g~a 133 (151)
T 3r8n_G 85 QVPVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENKGTA 133 (151)
T ss_dssp CCEEECCHHHHHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTTCSSH
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf 9803268889999999999999986---599989999999999999486646
No 6
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=1.00 E-value=1 Score=265.72 Aligned_cols=122 Identities=29% Similarity=0.367 Sum_probs=117.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEE
Q ss_conf 44655557605779898964168767508899999999999999640788579999999925774004773069935797
Q 029666 61 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQ 140 (190)
Q Consensus 61 ~k~f~k~~~piverliN~LM~~~~~~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~~v 140 (190)
-.+.+++++++|++|||+||+ +|||++|++||++||++|+.+|++||++||++||+|++|++|++++++||++|||
T Consensus 7 ~~~dp~~~~~lv~kliN~lM~----~GKKs~A~~Iv~~a~~~i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqv 82 (151)
T 1rss_A 7 LQPDLVYGDVLVTAFINKIMR----DGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQV 82 (151)
T ss_dssp CCCCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCEEEEE
T ss_conf 899977678999999999875----6659999999999999999872799499999999947896478996019779998
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 1124846789999999999997304799774899999999999708999
Q 029666 141 AVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189 (190)
Q Consensus 141 pv~isp~Rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~ 189 (190)
||+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|.
T Consensus 83 Pv~v~~~Rr~~lAirWi~~~ar~---r~~k~m~~~La~EiidA~~~~g~ 128 (151)
T 1rss_A 83 PMEVSPRRQQSLALRWLVQAANQ---RPERRAAVRIAHELMDAAEGKGG 128 (151)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTT---SSCSSHHHHHHHHHHHHHTTCSH
T ss_pred EEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 25618999999999999999987---68998899999999999958871
No 7
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=1.00 E-value=1 Score=265.52 Aligned_cols=123 Identities=31% Similarity=0.397 Sum_probs=118.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEE
Q ss_conf 54465555760577989896416876750889999999999999964078857999999992577400477306993579
Q 029666 60 SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRR 139 (190)
Q Consensus 60 ~~k~f~k~~~piverliN~LM~~~~~~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~~ 139 (190)
.-.+.++|++++|++|||+||+ +|||++|++||++||++|+.+|++||++||++||+|++|++|++++++||++||
T Consensus 10 ~~~~dp~y~~~lV~kliN~lM~----~GKKs~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyq 85 (155)
T 1hus_A 10 DVLPDPIYNSKLVTRLINKIMI----DGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVGGANYQ 85 (155)
T ss_dssp CCCCCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEETTEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCEEEE
T ss_conf 7998987688999999999874----746999999999999999987179849999999994789648898601987899
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 71124846789999999999997304799774899999999999708999
Q 029666 140 QAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189 (190)
Q Consensus 140 vpv~isp~Rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~ 189 (190)
|||+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|.
T Consensus 86 VPv~v~~~Rr~~lAirWi~~~ar~---R~~k~m~~~La~EiidA~~~~g~ 132 (155)
T 1hus_A 86 VPVEVRPDRRVSLGLRWLVQYARL---RNEKTMEERLANEIMDAANNTGA 132 (155)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHH---SCSSSHHHHHHHHHHHHHTTCSH
T ss_pred EEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 835607999999999999999986---69898999999999999958881
No 8
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=1.00 E-value=1 Score=265.22 Aligned_cols=124 Identities=27% Similarity=0.331 Sum_probs=118.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEE
Q ss_conf 65446555576057798989641687675088999999999999996407885799999999257740047730699357
Q 029666 59 YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVR 138 (190)
Q Consensus 59 ~~~k~f~k~~~piverliN~LM~~~~~~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~ 138 (190)
..-.+.++++||+|++|||+||+ +|||++|++||++||++|+.+|++||++||++||+|++|++|+++.++||++|
T Consensus 10 r~~~pdp~y~~~lV~kliN~lM~----~GKKs~A~~Iv~~A~~~I~~kt~~nPl~vl~~AI~Nv~P~veVks~rvGG~ty 85 (179)
T 3i1m_G 10 RKILPDPKFGSELLAKFVNILMV----DGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTY 85 (179)
T ss_dssp CCCCCCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCCSSSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCEEE
T ss_conf 75899977698899999999885----54899999999999999999848997999999999679986778885098789
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 971124846789999999999997304799774899999999999708999
Q 029666 139 RQAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189 (190)
Q Consensus 139 ~vpv~isp~Rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~ 189 (190)
||||+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|.
T Consensus 86 qVPv~V~p~Rr~~lAirWii~~ark---R~~k~m~erLA~ELidAa~~~G~ 133 (179)
T 3i1m_G 86 QVPVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENKGT 133 (179)
T ss_dssp CEEEECCTTHHHHHHHHHHHHHHTT---CCSSSHHHHHHHHHHHHHTSCSH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHCCCH
T ss_conf 9723268889999999999999986---59998899999999999948662
No 9
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=1.00 E-value=1 Score=263.82 Aligned_cols=123 Identities=27% Similarity=0.348 Sum_probs=117.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEE
Q ss_conf 54465555760577989896416876750889999999999999964078857999999992577400477306993579
Q 029666 60 SVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRR 139 (190)
Q Consensus 60 ~~k~f~k~~~piverliN~LM~~~~~~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~~ 139 (190)
.-.+.+++++++|++|||+||+ +|||++|++|||+||++|+.+|++||++||++||+|++|++|++++++||++||
T Consensus 11 ~~~~dp~y~~~lv~kliN~lM~----~GKKs~A~~Iv~~a~~~i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyq 86 (155)
T 3bbn_G 11 TAKSDPIYRNRLVNMLVNRILK----HGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQ 86 (155)
T ss_dssp CCCCCTTTCCSSGGGHHHHSCC----TTCHHHHHHHHSHHHHTTTTTCSSCTTHHHHHHGGGTCCSEEECCEEETTEEEC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEE
T ss_conf 8899976577999999999871----675999999999999999987289919999999994789748898545976999
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 71124846789999999999997304799774899999999999708999
Q 029666 140 QAVDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189 (190)
Q Consensus 140 vpv~isp~Rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~ 189 (190)
|||+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|+
T Consensus 87 VPv~v~~~Rr~~lAirWi~~~ar~---R~~k~m~~~La~EiidA~~~~g~ 133 (155)
T 3bbn_G 87 VPIEIGSTQGKALAIRWLLGAARK---RPGRNMAFKLSSELVDAAKGSGD 133 (155)
T ss_dssp CEEECCHHHHHHHHTTHHHHHHHT---CCSSCHHHHHHHHHHHHHHTCHH
T ss_pred EEEECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 815507999999999999999986---69998999999999999958872
No 10
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=262.69 Aligned_cols=121 Identities=27% Similarity=0.354 Sum_probs=116.9
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEE
Q ss_conf 46555576057798989641687675088999999999999996407885799999999257740047730699357971
Q 029666 62 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQA 141 (190)
Q Consensus 62 k~f~k~~~piverliN~LM~~~~~~GKK~~A~~Iv~~afeiI~~~t~~nPi~vl~~AI~N~~P~~es~ri~~gG~~~~vp 141 (190)
.+.+++++|+|++|||+||+ +|||++|++||++||++|+.+|++||++||++||+|++|++|+++.++||.+||||
T Consensus 6 ~~dp~~~~~lv~kliN~lM~----~GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~~yqvP 81 (149)
T 3gty_S 6 PPDPVFGDVLVAKLINRVMW----DGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVP 81 (149)
T ss_dssp CCCSSSCCHHHHHHHHHHCB----TTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEECCEEEEEE
T ss_conf 99987698899999999997----44599999999999999998738867899999999579986779886588889970
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 124846789999999999997304799774899999999999708999
Q 029666 142 VDISPLRRVNQAIYLITTGARESAFRNIKTIAECLADELINAAKGSSN 189 (190)
Q Consensus 142 v~isp~Rr~~lAirwI~~~ar~~~~r~~k~~~e~LA~EiI~A~~~~g~ 189 (190)
|+|+|.||+++||+||+++|++ |++++|++|||+|||+|++|+|.
T Consensus 82 v~v~~~rr~~lAirWi~~~ar~---r~~k~m~~~LA~Eli~A~~~~g~ 126 (149)
T 3gty_S 82 IEVQEPRRTSLALRWIVEAARA---KKGRPMKEKLAEEIIAAYNNTGT 126 (149)
T ss_dssp EECCTHHHHHHHHHHHHHHHHT---CSSSCHHHHHHHHHHHHHTTCSH
T ss_pred EECCHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHCCCH
T ss_conf 1567989999999999999986---59998899999999999938763
Done!