Query 029668
Match_columns 190
No_of_seqs 187 out of 970
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 16:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.6 4.3E-16 9.3E-21 114.6 4.4 79 50-131 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.6 2.1E-15 4.5E-20 107.8 4.7 73 52-130 1-73 (73)
3 PF14368 LTP_2: Probable lipid 99.5 1.4E-15 3.1E-20 111.3 -0.0 79 48-130 18-96 (96)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.4 9.6E-14 2.1E-18 95.4 3.4 62 59-122 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 1.6E-12 3.4E-17 92.2 4.0 61 57-125 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.1 2.6E-10 5.7E-15 78.9 5.3 75 52-130 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.6 1.2E-09 2.5E-14 79.5 -4.8 67 58-130 14-90 (90)
8 PF14547 Hydrophob_seed: Hydro 96.3 0.0016 3.4E-08 48.5 1.2 79 52-131 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 96.0 0.0067 1.5E-07 45.3 3.1 79 51-130 3-85 (85)
10 cd00261 AAI_SS AAI_SS: Alpha-A 66.1 2.8 6.2E-05 31.3 0.9 65 57-124 13-104 (110)
11 PLN00213 predicted protein; Pr 32.1 69 0.0015 25.4 3.7 45 48-96 44-91 (118)
12 PF12028 DUF3515: Protein of u 24.3 1.2E+02 0.0027 24.8 4.1 11 115-125 80-90 (163)
13 PF05617 Prolamin_like: Prolam 20.4 87 0.0019 21.3 2.1 21 73-96 26-46 (70)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.61 E-value=4.3e-16 Score=114.58 Aligned_cols=79 Identities=32% Similarity=0.634 Sum_probs=65.4
Q ss_pred CCchhhhcccccCHHHHhCCCCCCCCChhhHHHHHhcccC-----CCccccccccCCCccCcc-CCHHHHhhhhcccCCC
Q 029668 50 DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-----NPICLCQLLGKNNTYGIK-IDITRALKLPSVCGVT 123 (190)
Q Consensus 50 ~~C~~~l~~L~pClpYvtggs~~~~PS~~CC~aLk~l~~~-----d~~CLC~~l~~~~~lg~~-In~trA~aLP~~CgV~ 123 (190)
.+|.+++..|.||++|+++++ ..|++.||++++++++. +++|+|+++++. ..++. ||.+|+++||++||++
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~--~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~-~~~~~~i~~~~a~~LP~~C~v~ 77 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGG--PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSA-AAGISGLNPGRAAGLPGKCGVS 77 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCC--CCCChHHhhhhHHHhhccCCCCchhhhhhccccc-ccccCCCCHHHHHhChHhcccC
Confidence 479999999999999999865 57999999999999764 568899888775 22333 9999999999999999
Q ss_pred CC----CCCCCC
Q 029668 124 TP----PVNLCS 131 (190)
Q Consensus 124 ~P----P~s~Cs 131 (190)
++ +.+||+
T Consensus 78 ~~~~i~~~~dC~ 89 (89)
T cd01960 78 IPYPISPSTDCS 89 (89)
T ss_pred CCCCCCCCCCCC
Confidence 76 447774
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.57 E-value=2.1e-15 Score=107.84 Aligned_cols=73 Identities=30% Similarity=0.664 Sum_probs=61.2
Q ss_pred chhhhcccccCHHHHhCCCCCCCCChhhHHHHHhcccCCCccccccccCCCccCccCCHHHHhhhhcccCCCCCCCCCC
Q 029668 52 CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLC 130 (190)
Q Consensus 52 C~~~l~~L~pClpYvtggs~~~~PS~~CC~aLk~l~~~d~~CLC~~l~~~~~lg~~In~trA~aLP~~CgV~~PP~s~C 130 (190)
|...+..|.+|++|++++++...|+..||++||++ +++|+|.+++.. .+. .||.+||++||++||+++++ ++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~-~~~-~i~~~~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSL-VLQ-IIDPDKAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCC-ccc-ccCHHHHHHHHHHcCCCCCC-CCC
Confidence 66777889999999998653346999999999984 677999988764 333 49999999999999999988 877
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.52 E-value=1.4e-15 Score=111.27 Aligned_cols=79 Identities=43% Similarity=0.909 Sum_probs=50.9
Q ss_pred CCCCchhhhcccccCHHHHhCCCCCCCCChhhHHHHHhcccCCCccccccccCCCccCccCCHHHHhhhhcccCCCCCCC
Q 029668 48 PEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPV 127 (190)
Q Consensus 48 ~~~~C~~~l~~L~pClpYvtggs~~~~PS~~CC~aLk~l~~~d~~CLC~~l~~~~~lg~~In~trA~aLP~~CgV~~PP~ 127 (190)
...+|.+.+....+|+.|++++ ..|+..||+++|++++.++.|||+++++....+++||.+|++.||++||++.++
T Consensus 18 ~~~~c~~~l~~c~~~~~~~~~~---~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~- 93 (96)
T PF14368_consen 18 CCCSCANSLLPCCPCLCYVTGG---PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPP- 93 (96)
T ss_dssp BTTB-HCCCCHH--HHHHHCC--------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S--
T ss_pred CcchhHHHHhccccchhccCCC---CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCC-
Confidence 5578876654444558898853 489999999999998889999999999863245579999999999999999987
Q ss_pred CCC
Q 029668 128 NLC 130 (190)
Q Consensus 128 s~C 130 (190)
++|
T Consensus 94 ~~C 96 (96)
T PF14368_consen 94 SKC 96 (96)
T ss_dssp ---
T ss_pred CCC
Confidence 776
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.42 E-value=9.6e-14 Score=95.37 Aligned_cols=62 Identities=42% Similarity=0.893 Sum_probs=52.0
Q ss_pred cccCHHHHhCCCCCCCCChhhHHHHHhcccCCCccccccccCCCccCccC-CHHHHhhhhcccCC
Q 029668 59 MSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKI-DITRALKLPSVCGV 122 (190)
Q Consensus 59 L~pClpYvtggs~~~~PS~~CC~aLk~l~~~d~~CLC~~l~~~~~lg~~I-n~trA~aLP~~CgV 122 (190)
|+||++|+++++ ..|+..||++++++++.++.|+|+++++.......+ |.++++.||++|||
T Consensus 1 L~~C~~y~~~~~--~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGA--TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCC--CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 579999999764 579999999999999889999999999862111133 79999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.31 E-value=1.6e-12 Score=92.18 Aligned_cols=61 Identities=31% Similarity=0.647 Sum_probs=52.6
Q ss_pred cccccCHHHHhCCCCCCCCChhhHHHHHhcccCCCccccccccCCCccCccCCHHHHhhhhcccCCCCC
Q 029668 57 LNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTP 125 (190)
Q Consensus 57 ~~L~pClpYvtggs~~~~PS~~CC~aLk~l~~~d~~CLC~~l~~~~~lg~~In~trA~aLP~~CgV~~P 125 (190)
.+|.+|++|++++. .|+.+||+.||+ +..|||+|++++ .++..||.++|+.|+++|||.+|
T Consensus 4 ~~L~~C~~ai~~~~---~Ps~~CC~~Lk~----~~~CLC~y~~~p-~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGGS---PPSAACCAKLKE----QQSCLCQYAKNP-SLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCCC---CCCHHHHHHHhc----CCCCeeeeecCc-cHHhhcCcHHHHHHHHHcCCCCC
Confidence 47899999999753 799999999998 448999999886 44446999999999999999985
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.06 E-value=2.6e-10 Score=78.87 Aligned_cols=75 Identities=39% Similarity=0.787 Sum_probs=59.5
Q ss_pred chhhhcccccCHHHHhCCCCCCCCChhhHHHHHhcccCCCccccccccCCCccCc----cCCHHHHhhhhcccCCCCCCC
Q 029668 52 CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGI----KIDITRALKLPSVCGVTTPPV 127 (190)
Q Consensus 52 C~~~l~~L~pClpYvtggs~~~~PS~~CC~aLk~l~~~d~~CLC~~l~~~~~lg~----~In~trA~aLP~~CgV~~PP~ 127 (190)
|.+.+..+.+|++|+++......|+..||++++.+. +..|+|..++.. ..+. .+|..++..||+.||+..+.
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~-~~~~~~~~~~~~~~a~~lp~~C~~~~~~- 76 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAA-VLGILEIPGVNAQNAASLPSACGVPPPY- 76 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcc-cccccchhhhhHHHHHhhHHhcCCCCCC-
Confidence 677788888999999975323578899999999986 788999998875 2222 25999999999999998753
Q ss_pred CCC
Q 029668 128 NLC 130 (190)
Q Consensus 128 s~C 130 (190)
+.|
T Consensus 77 ~~C 79 (79)
T smart00499 77 TDC 79 (79)
T ss_pred CCC
Confidence 444
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.58 E-value=1.2e-09 Score=79.51 Aligned_cols=67 Identities=34% Similarity=0.790 Sum_probs=53.5
Q ss_pred ccccCHHHHhCCCCCCCCChhhHHHHHhcccCCCccccccccCC-Ccc---------CccCCHHHHhhhhcccCCCCCCC
Q 029668 58 NMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKN-NTY---------GIKIDITRALKLPSVCGVTTPPV 127 (190)
Q Consensus 58 ~L~pClpYvtggs~~~~PS~~CC~aLk~l~~~d~~CLC~~l~~~-~~l---------g~~In~trA~aLP~~CgV~~PP~ 127 (190)
.|.+|..|++++. ..|+..||++|+++ ++.|.|..++.. ... ...++..+|..||+.|||.++.
T Consensus 14 ~l~~c~~~~~~~~--~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~- 87 (90)
T PF00234_consen 14 RLSPCLPYLQGGC--QQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY- 87 (90)
T ss_dssp HHHGGHHHHTTSS--SHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS-
T ss_pred cccccHHHHhccc--ccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC-
Confidence 3899999999854 26889999999998 889999999864 110 1258999999999999999864
Q ss_pred CCC
Q 029668 128 NLC 130 (190)
Q Consensus 128 s~C 130 (190)
++|
T Consensus 88 ~~C 90 (90)
T PF00234_consen 88 TDC 90 (90)
T ss_dssp S-G
T ss_pred CCC
Confidence 455
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=96.34 E-value=0.0016 Score=48.55 Aligned_cols=79 Identities=30% Similarity=0.648 Sum_probs=54.2
Q ss_pred chhhhcccccCHHHHh--CCCCCCCCChhhHHHHHhcccCC-CccccccccCCCccC-ccCCHHHH-hhhhcccCCCCCC
Q 029668 52 CLTKVLNMSDCLSYVT--EGSNVTVPDKPCCPELAGLVESN-PICLCQLLGKNNTYG-IKIDITRA-LKLPSVCGVTTPP 126 (190)
Q Consensus 52 C~~~l~~L~pClpYvt--ggs~~~~PS~~CC~aLk~l~~~d-~~CLC~~l~~~~~lg-~~In~trA-~aLP~~CgV~~PP 126 (190)
|-....+|.-|.+.+. +......+..+||.-++++.+.| ..|||..++.. .++ +++|.... ..|-..||-..|+
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~-vlg~i~~~ipv~l~~lln~CGk~~p~ 80 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKAN-VLGLINVNIPVALNLLLNACGKTVPS 80 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhh-cccccccccccHHHHHHHHhCCcCcC
Confidence 4444456777888771 10111246789999999998876 57999999874 555 44444333 3677889999888
Q ss_pred CCCCC
Q 029668 127 VNLCS 131 (190)
Q Consensus 127 ~s~Cs 131 (190)
.++|.
T Consensus 81 gf~C~ 85 (85)
T PF14547_consen 81 GFTCP 85 (85)
T ss_pred CCcCC
Confidence 88884
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=95.99 E-value=0.0067 Score=45.28 Aligned_cols=79 Identities=33% Similarity=0.688 Sum_probs=54.5
Q ss_pred CchhhhcccccCHHHHhCCC--CCCCCChhhHHHHHhcccCC-CccccccccCCCccCccCCHHHHhh-hhcccCCCCCC
Q 029668 51 DCLTKVLNMSDCLSYVTEGS--NVTVPDKPCCPELAGLVESN-PICLCQLLGKNNTYGIKIDITRALK-LPSVCGVTTPP 126 (190)
Q Consensus 51 ~C~~~l~~L~pClpYvtggs--~~~~PS~~CC~aLk~l~~~d-~~CLC~~l~~~~~lg~~In~trA~a-LP~~CgV~~PP 126 (190)
.|-....+|--|.+-+..-. ....|..+||.-++++.+.| ..|+|..+|.. .+|+++|..-.+. |-..||-..|+
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan-~lgi~~~~pv~l~llln~CGk~~P~ 81 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN-ILGISINIPVALSLLLNSCGRNVPP 81 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc-ccCcccccChhHHHHHHHHcCcCCC
Confidence 35444456667777663210 11357789999999998886 57999999874 6676665555554 55679999888
Q ss_pred CCCC
Q 029668 127 VNLC 130 (190)
Q Consensus 127 ~s~C 130 (190)
.++|
T Consensus 82 gf~C 85 (85)
T cd01958 82 GFTC 85 (85)
T ss_pred CCcC
Confidence 7877
No 10
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=66.15 E-value=2.8 Score=31.27 Aligned_cols=65 Identities=25% Similarity=0.524 Sum_probs=42.4
Q ss_pred cccccCHHHHhCCC-CCC-----------CCChhhHHHHHhcccCCCccccccccCC-----CccC----------ccCC
Q 029668 57 LNMSDCLSYVTEGS-NVT-----------VPDKPCCPELAGLVESNPICLCQLLGKN-----NTYG----------IKID 109 (190)
Q Consensus 57 ~~L~pClpYvtggs-~~~-----------~PS~~CC~aLk~l~~~d~~CLC~~l~~~-----~~lg----------~~In 109 (190)
..|.+|..|+.... ... ..-..||..++.+ +..|-|..|... ...+ ...-
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERM 89 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHH
Confidence 35789999987321 110 1125799999996 678999888632 0000 1133
Q ss_pred HHHHhhhhcccCCCC
Q 029668 110 ITRALKLPSVCGVTT 124 (190)
Q Consensus 110 ~trA~aLP~~CgV~~ 124 (190)
...|..||..||+..
T Consensus 90 ~~~a~~Lp~~C~~~~ 104 (110)
T cd00261 90 RQAAQNLPSMCNLYP 104 (110)
T ss_pred HHHHHhhchhcCCCC
Confidence 457889999999986
No 11
>PLN00213 predicted protein; Provisional
Probab=32.09 E-value=69 Score=25.39 Aligned_cols=45 Identities=13% Similarity=0.528 Sum_probs=31.6
Q ss_pred CCCCchhhhcccccCHHHHhC---CCCCCCCChhhHHHHHhcccCCCccccc
Q 029668 48 PEDDCLTKVLNMSDCLSYVTE---GSNVTVPDKPCCPELAGLVESNPICLCQ 96 (190)
Q Consensus 48 ~~~~C~~~l~~L~pClpYvtg---gs~~~~PS~~CC~aLk~l~~~d~~CLC~ 96 (190)
+...|...+.++-.|..-+.. .+.-......||-++.+. | .|.=+
T Consensus 44 d~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~---d-nCwP~ 91 (118)
T PLN00213 44 DITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDA---D-NCIPK 91 (118)
T ss_pred cHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhh---h-ccccC
Confidence 566799999999999875542 122336778899999883 4 66554
No 12
>PF12028 DUF3515: Protein of unknown function (DUF3515); InterPro: IPR021903 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 166 to 214 amino acids in length. This protein has a conserved RCG sequence motif.
Probab=24.35 E-value=1.2e+02 Score=24.75 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=8.0
Q ss_pred hhhcccCCCCC
Q 029668 115 KLPSVCGVTTP 125 (190)
Q Consensus 115 aLP~~CgV~~P 125 (190)
.+--+||+..|
T Consensus 80 ~vvlRCGV~~P 90 (163)
T PF12028_consen 80 PVVLRCGVPRP 90 (163)
T ss_pred cEEEECCCCCC
Confidence 45578999876
No 13
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=20.36 E-value=87 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=16.4
Q ss_pred CCCChhhHHHHHhcccCCCccccc
Q 029668 73 TVPDKPCCPELAGLVESNPICLCQ 96 (190)
Q Consensus 73 ~~PS~~CC~aLk~l~~~d~~CLC~ 96 (190)
...+.+||..+..+ ...|.=.
T Consensus 26 ~~i~~~CC~~i~~~---g~~C~~~ 46 (70)
T PF05617_consen 26 KNIGPECCKAINKM---GKDCHPA 46 (70)
T ss_pred CCCChHHHHHHHHH---hHhHHHH
Confidence 47889999999985 5667665
Done!