BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029670
         (190 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human
           Pirh2. Northeast Structural Genomics Consortium (Nesg)
           Target Ht2a
          Length = 137

 Score = 86.3 bits (212), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 11/103 (10%)

Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct: 19  GCEHYDRGCLLKAPCCDKLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEKIQ 69

Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
             QQ C  C    GEY+C+ C LFD D  KKQYHC+ CGICR 
Sbjct: 70  HAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRI 110


>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The
           Ring Finger And Chy Zinc Finger Domain-Containing
           Protein 1 From Mus Musculus
          Length = 143

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 11/103 (10%)

Query: 72  GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
           GC+HY R C ++APCC++++ CR CH         D    H + R +V +V C  C   Q
Sbjct: 18  GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 68

Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
             QQ C +C    GEY+C  C LFD D  K+QYHC+ CGICR 
Sbjct: 69  HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRI 109


>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
           Lactobacillus Brevis
          Length = 161

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 102 NNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCM-GEYFCESCKLFDDD 158
           + +NV  K  H  P   V   +   C T   +++V    G+ + G  FC +C+ FDDD
Sbjct: 29  DKVNVPWKAGHSFPGGHVE--VGEPCAT-AAIREVFEETGLRLSGVTFCGTCEWFDDD 83


>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
          Length = 768

 Score = 28.1 bits (61), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYS---HLADREFLVTEESTNHNGSTELLR 65
           MA L  +HS    FE  +T+  ++ + S P  +   HLA  +F+ T +   H+  T  +R
Sbjct: 447 MASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQ---HSSGTNRIR 503


>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
           Of Sec31
          Length = 772

 Score = 28.1 bits (61), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 9   MAGLEVHHSSHQQFEPMSTSCKADEIFSTPSYS---HLADREFLVTEESTNHNGSTELLR 65
           MA L  +HS    FE  +T+  ++ + S P  +   HLA  +F+ T +   H+  T  +R
Sbjct: 451 MASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQ---HSSGTNRIR 507


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,802,128
Number of Sequences: 62578
Number of extensions: 215519
Number of successful extensions: 768
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 13
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)