BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029670
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 14/128 (10%)
Query: 52 EESTNHNGSTELLRKGFME-----YGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINV 106
+ES + S+ L K + + GC HY R C+++ C+E + CRHCHN+A +
Sbjct: 116 KESDENQLSSSDLEKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACD---- 171
Query: 107 DQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHC 166
H + R V ++C +C Q Q C C CMG Y+C CKL+DDD +K YHC
Sbjct: 172 -----HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHC 226
Query: 167 DGCGICRF 174
D CGICR
Sbjct: 227 DDCGICRI 234
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 60/105 (57%), Gaps = 11/105 (10%)
Query: 70 EYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGT 129
+ GC+HY R C ++APCC++++ CR CH D H + R +V +V C C
Sbjct: 17 QRGCEHYDRGCLLKAPCCDKLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEK 67
Query: 130 EQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
Q QQ C C GEY+C+ C LFD D KKQYHC+ CGICR
Sbjct: 68 IQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRI 110
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 11/103 (10%)
Query: 72 GCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ 131
GC+HY R C ++APCC++++ CR CH D H + R +V +V C C Q
Sbjct: 19 GCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQ 69
Query: 132 KVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
QQ C +C GEY+C C LFD D K+QYHC+ CGICR
Sbjct: 70 HAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRI 110
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 40 YSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRRRC---------RIRAPCCNEI 90
Y+ LA E V E + + +L R GF CQ R C + C +E
Sbjct: 166 YAGLASVEPYVPEFTVSPFAVQKLSRYGFNTERCQAVLRMCDGDVGASLEHLLTQCFSET 225
Query: 91 FDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTE--QKVQQVCVNCGVCMGEYF 148
F R +EA+N I++D+ + R E + S+CG + +++Q G+ + EY
Sbjct: 226 FGERMKISEAVNQISLDECMEQ---RQEEAFALKSICGEKFIERIQNRVWTIGLEL-EYL 281
Query: 149 CESCKLFDDDTSKKQYHCDGCGICRF 174
+ S K + IC+F
Sbjct: 282 TSRFRKSKPKESTKNVQENSLEICKF 307
>sp|Q83I36|DDL_TROW8 D-alanine--D-alanine ligase OS=Tropheryma whipplei (strain TW08/27)
GN=ddl PE=3 SV=1
Length = 347
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 39 SYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRR 78
S +L EF++ + N +G E+ K F E GC+HY R
Sbjct: 255 SAKYLNPVEFVIPAQFDNTDGYAEIASKVFFELGCRHYAR 294
>sp|Q83G28|DDL_TROWT D-alanine--D-alanine ligase OS=Tropheryma whipplei (strain Twist)
GN=ddl PE=3 SV=1
Length = 347
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 39 SYSHLADREFLVTEESTNHNGSTELLRKGFMEYGCQHYRR 78
S +L EF++ + N +G E+ K F E GC+HY R
Sbjct: 255 SAKYLNPVEFVIPAQFDNTDGYAEIASKVFFELGCRHYAR 294
>sp|O60140|YNS9_SCHPO Uncharacterized protein C18H10.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC18H10.09 PE=4 SV=2
Length = 495
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 72 GCQHYRRRCR-IRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTE 130
C+HY++ R R CC+ ++ C CH+ N+ H N++IC C E
Sbjct: 395 ACEHYKKSFRWFRFSCCDRVYPCDECHDADQNHT-----FEH------ANRIICGYCAME 443
Query: 131 Q--KVQQVCVNCG 141
K C +CG
Sbjct: 444 SFYKKDATCPHCG 456
>sp|Q9VY77|AJUBA_DROME LIM domain-containing protein jub OS=Drosophila melanogaster GN=jub
PE=1 SV=3
Length = 728
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 85 PCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLC--------GTEQKVQQV 136
P C C C + ++VD K+ H + C+ C GT++ V+ V
Sbjct: 602 PGCFRCCVCNECLDGVPFTVDVDHKIYCVNDYHRMFAPKCASCGKGITPVEGTDETVRVV 661
Query: 137 CVNCGVCMGEYFCESCKL-FDDDTSKKQYHCDGCGICRFVYVLLLL------AHHFEP 187
++ + Y CE C + D+ K+ Y DG +CR ++ L A H EP
Sbjct: 662 SMDKDFHVDCYICEECGMQLTDEPDKRCYPLDGRLLCRGCHLQRLALQSSPHARHQEP 719
>sp|Q3MIN7|RGL3_HUMAN Ral guanine nucleotide dissociation stimulator-like 3 OS=Homo
sapiens GN=RGL3 PE=1 SV=2
Length = 710
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 23 EPMSTSCKADEIFSTPSYSHLADREFLVTEESTNHNGSTE 62
EP+ST K +IFS + +HL+ RE L EE+T GS E
Sbjct: 368 EPLSTFRKLSQIFSDEN-NHLSSREILFQEEAT--EGSQE 404
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 136 VCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
VC NCG + Y C C+ + D K + C+ CG C++
Sbjct: 3673 VCGNCGENV--YQCHKCRSINYD-EKDPFLCNACGFCKY 3708
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 136 VCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
VC NCG + Y C C+ + D K + C+ CG C++
Sbjct: 3684 VCGNCGENV--YQCHKCRSINYD-EKDPFLCNACGFCKY 3719
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 136 VCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRF 174
VC NCG + Y C C+ + D K + C+ CG C++
Sbjct: 3670 VCGNCGENV--YQCHKCRSINYD-EKDPFLCNACGFCKY 3705
>sp|P21951|DPOE_YEAST DNA polymerase epsilon catalytic subunit A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=POL2 PE=1 SV=1
Length = 2222
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 90 IFDCRHCH---NEAMNNINVDQKLRHDIPRHEVNQVICSLC 127
IF C CH N+ + ++ QKLR DI + + + CS C
Sbjct: 2127 IFSCVRCHKAFNQVLLQEHLIQKLRSDIESYLIQDLRCSRC 2167
>sp|Q12UQ9|SYM_METBU Methionine--tRNA ligase OS=Methanococcoides burtonii (strain DSM
6242) GN=metG PE=3 SV=1
Length = 684
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 48 FLVTEESTNHNGSTELLRKGFMEYGCQHYRRRCRIRAPCCNEIF-------DCRHCHNEA 100
F T++ TNHN +TE++ K +E G + + P C+ C HC EA
Sbjct: 97 FGTTDDPTNHNRTTEIVSK-LIENGYVYPKTIEIAYCPSCDRSLPDRYVKGTCPHCKKEA 155
Query: 101 MNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQ 135
+ DQ + E+ C+ C + +Q
Sbjct: 156 RGD-ECDQGCGKHLEPGELEHPACTTCNGPAEYKQ 189
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3
Length = 403
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 148 FCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAH 183
F + CK + DDT KKQ D + ++ V+ ++AH
Sbjct: 130 FTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAH 165
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=3
Length = 403
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 148 FCESCKLFDDDTSKKQYHCDGCGICRFVYVLLLLAH 183
F + CK + DDT KKQ D + ++ V+ ++AH
Sbjct: 130 FTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAH 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,556,980
Number of Sequences: 539616
Number of extensions: 2780772
Number of successful extensions: 10806
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 10749
Number of HSP's gapped (non-prelim): 73
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)