Query 029670
Match_columns 190
No_of_seqs 118 out of 463
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 18:23:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/029670.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2290-2294//hhsearch_pdb/029670hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 1.0 1 1 271.3 9.2 108 62-180 8-115 (143)
2 2jrp_A Putative cytoplasmic pr 1.0 1 1 27.9 2.3 31 122-157 32-62 (81)
3 2dkt_A Ring finger and CHY zin 1.0 1 1 27.0 2.0 32 144-175 96-127 (143)
4 2jne_A Hypothetical protein YF 1.0 1 1 24.7 1.9 35 122-156 49-91 (101)
5 3f2b_A DNA-directed DNA polyme 1.0 1 1 21.1 1.0 38 146-183 502-547 (1041)
6 1vq8_Z 50S ribosomal protein L 1.0 1 1 20.8 0.4 33 134-177 27-59 (83)
7 4esj_A Type-2 restriction enzy 1.0 1 1 20.0 1.5 18 136-153 36-63 (257)
8 3u5c_f 40S ribosomal protein S 1.0 1 1 19.8 2.0 23 132-154 116-146 (152)
9 2fiy_A Protein FDHE homolog; F 1.0 1 1 19.3 3.1 70 81-170 182-260 (309)
10 1x4s_A Protein FON, zinc finge 1.0 1 1 18.6 1.6 25 120-144 10-36 (59)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=1.00 E-value=1 Score=271.29 Aligned_cols=108 Identities=40% Similarity=0.960 Sum_probs=100.3
Q ss_pred HHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 21115777457645446841364878981268115531027978677676658966656376478895320123565444
Q 029670 62 ELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCG 141 (190)
Q Consensus 62 ~~~~~~~~~~gC~HY~R~c~ir~pCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~~~C~nCg 141 (190)
..+|++.+++||+||+|+++||||||++|||||+||||+. +|+++|+.+++|+||.|+++|++++.|++||
T Consensus 8 ~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~---------dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg 78 (143)
T 2dkt_A 8 GVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCS 78 (143)
T ss_dssp CCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSC
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCC---------CCCCCHHCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 6434345767883668886178887898146144203345---------5664311050444235676065467388778
Q ss_pred CCCCCEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 334412168655745899999220599996300573123
Q 029670 142 VCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYVLLL 180 (190)
Q Consensus 142 ~~FnkYfC~iCklfdd~~~K~~yHC~~CGICRvG~~l~~ 180 (190)
+.||+|||+|||||| ++|+||||++|||||+|++...
T Consensus 79 ~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~f 115 (143)
T 2dkt_A 79 TLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDF 115 (143)
T ss_dssp CBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGE
T ss_pred CCCEEEEECEEECCC--CCCCEECCCCCCCEECCCCCCC
T ss_conf 620106711004355--7786042788873244687576
No 2
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=1.00 E-value=1 Score=27.94 Aligned_cols=31 Identities=26% Similarity=0.681 Sum_probs=20.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 764788953201235654443344121686557458
Q 029670 122 VICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDD 157 (190)
Q Consensus 122 ViCG~C~~eQ~~~~~C~nCg~~FnkYfC~iCklfdd 157 (190)
..|-.|+.+..+ |..||+. .|||+-|+=.-.
T Consensus 32 afCPeCgq~Le~---lkACGA~--~yFC~~C~~LiS 62 (81)
T 2jrp_A 32 ALCPDCRQPLQV---LKACGAV--DYFCQNGHGLIS 62 (81)
T ss_dssp EECSSSCSCCCE---EEETTEE--EECCTTTTCCCC
T ss_pred CCCCCHHHHHHH---HHHCCCC--CEEECCCCCEEE
T ss_conf 118434049998---7763784--754155888754
No 3
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=1.00 E-value=1 Score=26.98 Aligned_cols=32 Identities=28% Similarity=0.743 Sum_probs=21.4
Q ss_pred CCCEECCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 44121686557458999992205999963005
Q 029670 144 MGEYFCESCKLFDDDTSKKQYHCDGCGICRFV 175 (190)
Q Consensus 144 FnkYfC~iCklfdd~~~K~~yHC~~CGICRvG 175 (190)
-..|.|+.|++=.-...++.|||+.||+|.--
T Consensus 96 k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 96 KRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp SSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred CCEECCCCCCCEECCCCCCCEECCCCCEEECC
T ss_conf 86042788873244687576788918823635
No 4
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=1.00 E-value=1 Score=24.65 Aligned_cols=35 Identities=23% Similarity=0.617 Sum_probs=18.2
Q ss_pred EECCCCCCCCCCCCCCCCCCCCC--------CCEECCCCCCCC
Q ss_conf 76478895320123565444334--------412168655745
Q 029670 122 VICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLFD 156 (190)
Q Consensus 122 ViCG~C~~eQ~~~~~C~nCg~~F--------nkYfC~iCklfd 156 (190)
..|..|...-.....||-|+.++ .-|||..|+=.-
T Consensus 49 ~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgLi 91 (101)
T 2jne_A 49 ARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGLI 91 (101)
T ss_dssp EEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEEE
T ss_pred EECCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCEE
T ss_conf 9871125000112558643149999987167243230387502
No 5
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=1.00 E-value=1 Score=21.07 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=25.8
Q ss_pred CEECCCCCCC---CCC-----CCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1216865574---589-----9999220599996300573123455
Q 029670 146 EYFCESCKLF---DDD-----TSKKQYHCDGCGICRFVYVLLLLAH 183 (190)
Q Consensus 146 kYfC~iCklf---dd~-----~~K~~yHC~~CGICRvG~~l~~~~~ 183 (190)
-|.|+.|+.. ++. -+-+---|+.||.=..+-|-+||--
T Consensus 502 hy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~~~dg~~LlFE 547 (1041)
T 3f2b_A 502 HYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFE 547 (1041)
T ss_dssp EEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCEEECCCCCTH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 3467655420002456556666776565864455234667886713
No 6
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=1.00 E-value=1 Score=20.81 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 23565444334412168655745899999220599996300573
Q 029670 134 QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRFVYV 177 (190)
Q Consensus 134 ~~~C~nCg~~FnkYfC~iCklfdd~~~K~~yHC~~CGICRvG~~ 177 (190)
...||+||...- | ++...+++|+.||---.||.
T Consensus 27 ~y~Cp~CG~~~v---------~--r~atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 27 DHACPNCGEDRV---------D--RQGTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp CEECSSSCCEEE---------E--EEETTEEEETTTCCEEECCS
T ss_pred CCCCCCCCCCCE---------E--CCCCCEEECCCCCCEECCCE
T ss_conf 672999997213---------6--45788697999999962888
No 7
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=20.05 Aligned_cols=18 Identities=33% Similarity=1.184 Sum_probs=9.1
Q ss_pred CCCCCCC----------CCCCEECCCCC
Q ss_conf 5654443----------34412168655
Q 029670 136 VCVNCGV----------CMGEYFCESCK 153 (190)
Q Consensus 136 ~C~nCg~----------~FnkYfC~iCk 153 (190)
.||+||. +.+-+||+.|+
T Consensus 36 yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 36 YCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp CCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCC
T ss_conf 6999898455434389944220467754
No 8
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=1.00 E-value=1 Score=19.80 Aligned_cols=23 Identities=30% Similarity=0.902 Sum_probs=16.6
Q ss_pred CCCCCCCC--CCC------CCCCEECCCCCC
Q ss_conf 01235654--443------344121686557
Q 029670 132 KVQQVCVN--CGV------CMGEYFCESCKL 154 (190)
Q Consensus 132 ~~~~~C~n--Cg~------~FnkYfC~iCkl 154 (190)
.....||+ ||. -|+++||.+|.+
T Consensus 116 ~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 116 KLRRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp CCSCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred ECCCCCCCCCCCCCEEECCCCCCCCCCCCCE
T ss_conf 8767699866788467652688764389836
No 9
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=1.00 E-value=1 Score=19.33 Aligned_cols=70 Identities=17% Similarity=0.354 Sum_probs=42.3
Q ss_pred CEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCCCEECCCCCCC--CC
Q ss_conf 136487898126811553102797867767665896665637647889532012-356544433441216865574--58
Q 029670 81 RIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQ-QVCVNCGVCMGEYFCESCKLF--DD 157 (190)
Q Consensus 81 ~ir~pCCgk~YpCr~CHDE~~~h~~~~~~~~H~ldR~~v~~ViCG~C~~eQ~~~-~~C~nCg~~FnkYfC~iCklf--dd 157 (190)
+-.||+||....=-.=+.. . .....+-+.|+.|+++=.+. ..|++||..-.- .+| ++
T Consensus 182 ~~~CPvCGs~P~~s~l~~~------------g--~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l------~y~~~e~ 241 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQG------------G--KETGLRYLSCSLCACEWHYVRIKCSHCEESKHL------AYLSLEH 241 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC------------------CCEEEEEETTTCCEEECCTTSCSSSCCCSCC------EEECCCC
T ss_pred CCCCCCCCCCCCEEEEEEC------------C--CCCCCEEEEECCCCCEEEECCCCCCCCCCCCCE------EEEEECC
T ss_conf 8979989986740588404------------7--889807998189998775527678499898986------4787557
Q ss_pred -----C-CCCCEEECCCCC
Q ss_conf -----9-999922059999
Q 029670 158 -----D-TSKKQYHCDGCG 170 (190)
Q Consensus 158 -----~-~~K~~yHC~~CG 170 (190)
+ ..-.++-|+.||
T Consensus 242 ~~~~~~~~~~r~e~C~~C~ 260 (309)
T 2fiy_A 242 DGQPAEKAVLRAETCPSCQ 260 (309)
T ss_dssp -CCCSTTCSEEEEEETTTT
T ss_pred CCCCCCCCCEEEEECCCCC
T ss_conf 6666778665888766545
No 10
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=1.00 E-value=1 Score=18.60 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=17.1
Q ss_pred CEEECCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 63764788953--20123565444334
Q 029670 120 NQVICSLCGTE--QKVQQVCVNCGVCM 144 (190)
Q Consensus 120 ~~ViCG~C~~e--Q~~~~~C~nCg~~F 144 (190)
++.+|++|... ++..-.||.|++++
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~rY 36 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAPY 36 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 888685788876787665682979870
Done!