Query 029671
Match_columns 190
No_of_seqs 138 out of 1303
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 16:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 1.6E-31 3.6E-36 224.0 19.1 151 32-183 63-224 (365)
2 KOG0697 Protein phosphatase 1B 100.0 2.5E-32 5.4E-37 215.1 12.7 158 30-189 18-191 (379)
3 KOG0698 Serine/threonine prote 100.0 4.5E-30 9.7E-35 213.6 19.1 151 36-187 42-204 (330)
4 PTZ00224 protein phosphatase 2 100.0 7.3E-29 1.6E-33 208.8 20.2 146 30-185 18-165 (381)
5 PF00481 PP2C: Protein phospha 100.0 8.6E-30 1.9E-34 204.8 11.7 149 35-184 1-159 (254)
6 COG0631 PTC1 Serine/threonine 100.0 9E-28 1.9E-32 194.0 13.6 144 31-175 5-158 (262)
7 cd00143 PP2Cc Serine/threonine 99.9 1.8E-23 3.8E-28 166.6 18.2 146 35-182 2-156 (254)
8 smart00332 PP2Cc Serine/threon 99.9 2.7E-23 5.8E-28 166.0 19.2 149 32-183 4-160 (255)
9 PRK14559 putative protein seri 99.9 9.5E-24 2.1E-28 187.2 16.6 137 33-169 374-527 (645)
10 KOG0699 Serine/threonine prote 99.9 9.1E-24 2E-28 172.2 13.6 59 125-183 328-388 (542)
11 KOG0700 Protein phosphatase 2C 99.9 1.8E-21 3.8E-26 161.1 13.3 128 48-178 84-260 (390)
12 KOG1323 Serine/threonine phosp 99.8 1.6E-18 3.4E-23 140.5 12.8 118 61-178 140-297 (493)
13 PF13672 PP2C_2: Protein phosp 99.6 1.1E-14 2.5E-19 113.6 13.6 125 40-169 4-140 (212)
14 KOG1379 Serine/threonine prote 99.3 2.6E-11 5.6E-16 98.2 12.5 110 48-166 90-208 (330)
15 smart00331 PP2C_SIG Sigma fact 99.3 1.9E-10 4.2E-15 88.4 14.4 124 34-169 4-130 (193)
16 KOG0618 Serine/threonine phosp 99.1 2.5E-10 5.4E-15 103.5 8.3 155 25-184 513-677 (1081)
17 TIGR02865 spore_II_E stage II 98.4 3.8E-06 8.2E-11 77.4 11.9 109 48-169 566-679 (764)
18 PF07228 SpoIIE: Stage II spor 97.9 0.00013 2.9E-09 55.6 10.0 100 63-168 2-105 (193)
19 PRK10693 response regulator of 88.0 6.7 0.00014 32.3 9.8 94 62-159 160-259 (303)
20 KOG0404 Thioredoxin reductase 49.6 42 0.00091 27.1 4.9 69 2-73 68-150 (322)
21 PF01383 CpcD: CpcD/allophycoc 40.6 27 0.00058 21.3 2.1 15 170-184 38-52 (56)
22 COG0796 MurI Glutamate racemas 33.0 52 0.0011 26.9 3.2 55 66-120 6-67 (269)
23 PF05785 CNF1: Rho-activating 30.9 54 0.0012 26.9 2.9 23 125-149 131-153 (281)
24 TIGR02276 beta_rpt_yvtn 40-res 25.4 1.2E+02 0.0026 16.1 3.4 18 138-155 3-20 (42)
25 TIGR00067 glut_race glutamate 24.4 44 0.00096 26.8 1.4 22 68-89 1-23 (251)
26 COG3315 O-Methyltransferase in 23.2 79 0.0017 26.1 2.7 42 148-189 104-152 (297)
27 PRK00865 glutamate racemase; P 23.1 57 0.0012 26.2 1.8 24 67-90 7-31 (261)
28 PF08735 DUF1786: Putative pyr 22.7 1.9E+02 0.0041 23.4 4.7 105 65-169 80-199 (254)
29 COG1671 Uncharacterized protei 21.4 90 0.0019 23.2 2.4 20 171-190 77-96 (150)
30 PF06574 FAD_syn: FAD syntheta 21.2 42 0.0009 24.9 0.6 16 64-79 7-23 (157)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.6e-31 Score=224.00 Aligned_cols=151 Identities=33% Similarity=0.492 Sum_probs=127.0
Q ss_pred CceeEEEEeccCCCCCCCCccEEEeeccc--------CCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCCcccHHH
Q 029671 32 KHITHGYHLVKGKSNHAMEDYLVSEFKQE--------KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTES 103 (190)
Q Consensus 32 ~~~~~~~~s~~G~r~~~neD~~~i~~~~~--------~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~ 103 (190)
+.+.++..|++|.|. .|||++++..... +..+..||+|||||||+.++++++.+++..+.+.......+.+
T Consensus 63 ~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 447899999999866 9999987633211 1234689999999999999999999999999876655567788
Q ss_pred HHHHHHHHHHHHHHHhhc-ccCCCCcceEEEEEEeCCEEEEEEcCCceEEEEeCCeeeecCCCCCCc--hHHHHHHhCCc
Q 029671 104 AIRRAYHMTDTKILEQAF-VLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGG 180 (190)
Q Consensus 104 ~l~~~f~~~~~~l~~~~~-~~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~--~E~~RI~~~gG 180 (190)
+|.++|.++|+.+.+... .....+|||++++++.++++|+|||||||+|+++++++++||.||+|. .|++||+++||
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 999999999999876542 222447888777788899999999999999999999999999999999 79999999999
Q ss_pred EEE
Q 029671 181 FVS 183 (190)
Q Consensus 181 ~v~ 183 (190)
.|.
T Consensus 222 ~v~ 224 (365)
T PLN03145 222 YVY 224 (365)
T ss_pred cee
Confidence 986
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-32 Score=215.13 Aligned_cols=158 Identities=28% Similarity=0.425 Sum_probs=134.1
Q ss_pred CCCceeEEEEeccCCCCCCCCccEEEeecc-cCCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCCcc--------c
Q 029671 30 MSKHITHGYHLVKGKSNHAMEDYLVSEFKQ-EKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWT--------D 100 (190)
Q Consensus 30 ~~~~~~~~~~s~~G~r~~~neD~~~i~~~~-~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~--------~ 100 (190)
..+.+.|+..|+||+|- +|||++...... .+-.+|.||+|||||.|+++|.+++.+|+..+.+...+.. +
T Consensus 18 ~GNglryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~ 96 (379)
T KOG0697|consen 18 EGNGLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVEN 96 (379)
T ss_pred cCCceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHH
Confidence 35669999999999999 999999764433 3567999999999999999999999999999998754433 6
Q ss_pred HHHHHHHHHHHHHHHHHHhh---cccCCCCcceEEEEEEeCCEEEEEEcCCceEEEEeCCeeeecCCCCCCc--hHHHHH
Q 029671 101 TESAIRRAYHMTDTKILEQA---FVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLI 175 (190)
Q Consensus 101 ~~~~l~~~f~~~~~~l~~~~---~~~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~--~E~~RI 175 (190)
.++-|+..|.++|+.+.... .+. ..+|||.+++++.+.++|++|+||||++++|+|++..-|.||+|. .|++||
T Consensus 97 ~~~GIrtGFL~iDE~mr~~~~~~~~~-drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRI 175 (379)
T KOG0697|consen 97 VEKGIRTGFLSIDEIMRTLSDISKGS-DRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERI 175 (379)
T ss_pred HHhhHhhcceeHHHHHhhhhhhhccc-ccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHH
Confidence 78899999999999886544 222 336667777788899999999999999999999999999999999 999999
Q ss_pred HhCCcEEE--cCCCCc
Q 029671 176 ESRGGFVS--NIPGSS 189 (190)
Q Consensus 176 ~~~gG~v~--~~~g~~ 189 (190)
+.+||.|+ +.+|++
T Consensus 176 qnAGGSVMIqRvNGsL 191 (379)
T KOG0697|consen 176 QNAGGSVMIQRVNGSL 191 (379)
T ss_pred hcCCCeEEEEEeccee
Confidence 99999776 666654
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-30 Score=213.60 Aligned_cols=151 Identities=44% Similarity=0.621 Sum_probs=125.5
Q ss_pred EEEEeccCCCCCCCCccEEEeeccc----CCC-ceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCCcc---cHHHHHHH
Q 029671 36 HGYHLVKGKSNHAMEDYLVSEFKQE----KDN-ELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWT---DTESAIRR 107 (190)
Q Consensus 36 ~~~~s~~G~r~~~neD~~~i~~~~~----~~~-~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~---~~~~~l~~ 107 (190)
.+.++.+|.++ .|||++....... ... +..||||||||||..+|+|+..+|+..+.++...+. .+..++++
T Consensus 42 ~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 42 GSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred eEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 44457888777 8999998644422 333 689999999999999999999999999999877665 47999999
Q ss_pred HHH-HHHHHHHHhhcccCCCCcceEEEEEEeCCEEEEEEcCCceEEEEeCC-eeeecCCCCCCc--hHHHHHHhCCcEEE
Q 029671 108 AYH-MTDTKILEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNG-VAKQLSVDHEPS--KEKRLIESRGGFVS 183 (190)
Q Consensus 108 ~f~-~~~~~l~~~~~~~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g-~~~~Lt~dH~~~--~E~~RI~~~gG~v~ 183 (190)
+|. ++|.++..+.......|+||+++++.++.++|+||+|||||+|++.+ .+++||.||+|. .|+.||+++||+|.
T Consensus 121 ~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~ 200 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVS 200 (330)
T ss_pred HHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEE
Confidence 999 69999987633333566777777666566999999999999999866 899999999998 99999999999999
Q ss_pred cCCC
Q 029671 184 NIPG 187 (190)
Q Consensus 184 ~~~g 187 (190)
...|
T Consensus 201 ~~~~ 204 (330)
T KOG0698|consen 201 NWGG 204 (330)
T ss_pred EcCC
Confidence 7765
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.97 E-value=7.3e-29 Score=208.83 Aligned_cols=146 Identities=27% Similarity=0.457 Sum_probs=118.9
Q ss_pred CCCceeEEEEeccCCCCCCCCccEEEeecccCCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 029671 30 MSKHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAY 109 (190)
Q Consensus 30 ~~~~~~~~~~s~~G~r~~~neD~~~i~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~l~~~f 109 (190)
....+.++..+++|.|+ .|||++++.. ..+..||+|||||||+++|.+++.++...+....... ..+.|+++|
T Consensus 18 ~~~~~~~g~~s~~G~R~-~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~~--~~~~l~~a~ 90 (381)
T PTZ00224 18 GNSIFRCASACVNGYRE-SMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEPM--TDERMEELC 90 (381)
T ss_pred CCccEEEEEEeCCCCCC-CCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccccc--cHHHHHHHH
Confidence 56779999999999987 8999987532 2355799999999999999999999987775443221 245699999
Q ss_pred HHHHHHHHHhhcccCCCCcceEEEEEEeCCEEEEEEcCCceEEEEeCCeeeecCCCCCCc--hHHHHHHhCCcEEEcC
Q 029671 110 HMTDTKILEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGGFVSNI 185 (190)
Q Consensus 110 ~~~~~~l~~~~~~~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~--~E~~RI~~~gG~v~~~ 185 (190)
..+|+++.+... .+|+|++++++..+.++++|||||||+|++++|++++||.||+|. .|+.||+++||.|...
T Consensus 91 ~~~d~~i~~~~~---~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~ 165 (381)
T PTZ00224 91 LEIDEEWMDSGR---EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSN 165 (381)
T ss_pred HHHHHHHHhccc---CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccc
Confidence 999999975432 335555555555568999999999999999999999999999999 7999999999998753
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.96 E-value=8.6e-30 Score=204.85 Aligned_cols=149 Identities=36% Similarity=0.523 Sum_probs=119.4
Q ss_pred eEEEEeccCCCCCCCCccEEEeeccc---CCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCCcc--cHHHHHHHHH
Q 029671 35 THGYHLVKGKSNHAMEDYLVSEFKQE---KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWT--DTESAIRRAY 109 (190)
Q Consensus 35 ~~~~~s~~G~r~~~neD~~~i~~~~~---~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~--~~~~~l~~~f 109 (190)
.+++.+.+|.|. .|||++++..... ...+..+|+|||||||.++|++++..++..+.+...... ++.++|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 378889999999 9999999766442 456889999999999999999999999977766543322 5789999999
Q ss_pred HH-HHHHHHHhhcc-cCCCCcceEEEEEEeCCEEEEEEcCCceEEEEeCCeee-ecCCCCCCc--hHHHHHHhCCcEEEc
Q 029671 110 HM-TDTKILEQAFV-LGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAK-QLSVDHEPS--KEKRLIESRGGFVSN 184 (190)
Q Consensus 110 ~~-~~~~l~~~~~~-~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g~~~-~Lt~dH~~~--~E~~RI~~~gG~v~~ 184 (190)
.+ +++.+...... ....+|||++++++.++++|+|||||||+|+++++... +||+||+|. .|+.||+++||.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 89888763321 22556666667777799999999999999999999888 999999999 899999999999984
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.95 E-value=9e-28 Score=193.96 Aligned_cols=144 Identities=28% Similarity=0.282 Sum_probs=118.6
Q ss_pred CCceeEEEEeccCCCCCCCCccEEEeecccCCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCC----CCc-cc-HHHH
Q 029671 31 SKHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEP----DFW-TD-TESA 104 (190)
Q Consensus 31 ~~~~~~~~~s~~G~r~~~neD~~~i~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~----~~~-~~-~~~~ 104 (190)
...+.+...+..|..++.|||++.+........ ..||+|||||||+++++++++.+...|.+.. ... .+ +.+.
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~ 83 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEEL 83 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Confidence 455778889999988878999999765333333 6799999999999999998888888777652 111 11 6799
Q ss_pred HHHHHHHHHHHHHHhhc--ccCCCCcceEEEEEEeCCEEEEEEcCCceEEEEeCCeeeecCCCCCCc--hHHHHH
Q 029671 105 IRRAYHMTDTKILEQAF--VLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLI 175 (190)
Q Consensus 105 l~~~f~~~~~~l~~~~~--~~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~--~E~~RI 175 (190)
|.+.+..+|+.|..... .....+|||++++++.++++|+|||||||+|++++++++|||.||++. .|+.|+
T Consensus 84 l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~ 158 (262)
T COG0631 84 LKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGI 158 (262)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcC
Confidence 99999999999987763 344789999999999999999999999999999999999999999998 566663
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.92 E-value=1.8e-23 Score=166.58 Aligned_cols=146 Identities=39% Similarity=0.559 Sum_probs=119.6
Q ss_pred eEEEEeccCCCCCCCCccEEEeecccCCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCC-----cccHHHHHHHHH
Q 029671 35 THGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDF-----WTDTESAIRRAY 109 (190)
Q Consensus 35 ~~~~~s~~G~r~~~neD~~~i~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~-----~~~~~~~l~~~f 109 (190)
.+++.+..|.|. .|||++.+...... .++.+|+|+|||||...+.++++.+...+.+.... ...+...|+.+|
T Consensus 2 ~~~~~~~~g~r~-~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGDRK-TNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCCCC-CCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 466777788777 89999987443211 36799999999999999998888888877765432 346678899999
Q ss_pred HHHHHHHHHhhcc--cCCCCcceEEEEEEeCCEEEEEEcCCceEEEEeCCeeeecCCCCCCc--hHHHHHHhCCcEE
Q 029671 110 HMTDTKILEQAFV--LGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGGFV 182 (190)
Q Consensus 110 ~~~~~~l~~~~~~--~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~--~E~~RI~~~gG~v 182 (190)
.++++.+...... ....+|||++++++..++++++|+||||+|++++++++++|.||++. .|+.||...+|++
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~ 156 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRV 156 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcE
Confidence 9999999876532 33557888888888899999999999999999999999999999999 7999999999974
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.92 E-value=2.7e-23 Score=166.04 Aligned_cols=149 Identities=40% Similarity=0.572 Sum_probs=123.2
Q ss_pred CceeEEEEeccCCCCCCCCccEEEeecccCCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCCc----ccHHHHHHH
Q 029671 32 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFW----TDTESAIRR 107 (190)
Q Consensus 32 ~~~~~~~~s~~G~r~~~neD~~~i~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~----~~~~~~l~~ 107 (190)
..+.+++.+.+|.|. .|||++++.... ..+..+|+|||||||..+|.++++.+...+....... ..+.+.|++
T Consensus 4 ~~~~~~~~~~~~~r~-~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (255)
T smart00332 4 LGLRYGLSSMQGVRK-PMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRK 80 (255)
T ss_pred CceeEEEecCCCCCC-CCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHH
Confidence 346677777777666 999999874321 2568899999999999999999999998887664333 247888999
Q ss_pred HHHHHHHHHHHhhccc--CCCCcceEEEEEEeCCEEEEEEcCCceEEEEeCCeeeecCCCCCCc--hHHHHHHhCCcEEE
Q 029671 108 AYHMTDTKILEQAFVL--GKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGGFVS 183 (190)
Q Consensus 108 ~f~~~~~~l~~~~~~~--~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~--~E~~RI~~~gG~v~ 183 (190)
++.++++++....... ...++||++++++.+++++++|+||||+|+++++++.+||.||++. .|..||...++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 160 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI 160 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE
Confidence 9999999998765332 2467888888888899999999999999999999999999999998 78999999998764
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.91 E-value=9.5e-24 Score=187.19 Aligned_cols=137 Identities=24% Similarity=0.285 Sum_probs=101.0
Q ss_pred ceeEEEEeccCCCCCCCCccEEEeecc-----cCC---CceEEEEEecCCccHHH----HHHHHHHHHHHHHcCCCCccc
Q 029671 33 HITHGYHLVKGKSNHAMEDYLVSEFKQ-----EKD---NELGLFAIFDGHLGHDV----ANYLQTHLFDNILKEPDFWTD 100 (190)
Q Consensus 33 ~~~~~~~s~~G~r~~~neD~~~i~~~~-----~~~---~~~~l~~V~DGhgG~~~----a~~~~~~l~~~l~~~~~~~~~ 100 (190)
.+.++..|+.|.+++.|||++.+.... ..+ ....+|+|||||||+.. |+++++.+...+.+.......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 477889999998776999998753211 011 23579999999997654 445555554444332111112
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc----cCCCCcceEEEEEEeCCEEEEEEcCCceEEEE-eCCeeeecCCCCCCc
Q 029671 101 TESAIRRAYHMTDTKILEQAFV----LGKGGSTAVTAILINGQKLVVANVGDSRAVIS-KNGVAKQLSVDHEPS 169 (190)
Q Consensus 101 ~~~~l~~~f~~~~~~l~~~~~~----~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~-r~g~~~~Lt~dH~~~ 169 (190)
..+.|+++|..+|+.|.+.... ....+|||++++++.++++|++||||||+|++ ++|++++||+||++.
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~ 527 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVG 527 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHH
Confidence 3677999999999999865421 22458999999999899999999999999988 578999999999998
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.91 E-value=9.1e-24 Score=172.16 Aligned_cols=59 Identities=46% Similarity=0.723 Sum_probs=53.4
Q ss_pred CCCcceEEEEEEeCCEEEEEEcCCceEEEEeCCeeeecCCCCCCc--hHHHHHHhCCcEEE
Q 029671 125 KGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPS--KEKRLIESRGGFVS 183 (190)
Q Consensus 125 ~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~--~E~~RI~~~gG~v~ 183 (190)
..+|||.+++++.+++|||||.||||++++|.|+..-||.||+|. .|..||.++||.|.
T Consensus 328 ~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vt 388 (542)
T KOG0699|consen 328 EDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVT 388 (542)
T ss_pred CCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEe
Confidence 345666666677799999999999999999999999999999999 78999999999998
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.87 E-value=1.8e-21 Score=161.10 Aligned_cols=128 Identities=41% Similarity=0.572 Sum_probs=98.9
Q ss_pred CCCccEEEeecccCCCceEEEEEecCCccHHHHHHHHHHHHHHHHcC------------C--------------------
Q 029671 48 AMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKE------------P-------------------- 95 (190)
Q Consensus 48 ~neD~~~i~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~------------~-------------------- 95 (190)
.-||++-+.. ..++++.|+||||||||.++++++.++|+..+..+ .
T Consensus 84 ~~edrv~~~~--s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVAV--SEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceeee--eccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 3466654322 23688999999999999999999999999988721 0
Q ss_pred --CCcccHHHHHHHHHHHHHHHHHHhh-------cccCCCCcceEEEEEEeCCEEEEEEcCCceEEEEe---CC---eee
Q 029671 96 --DFWTDTESAIRRAYHMTDTKILEQA-------FVLGKGGSTAVTAILINGQKLVVANVGDSRAVISK---NG---VAK 160 (190)
Q Consensus 96 --~~~~~~~~~l~~~f~~~~~~l~~~~-------~~~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r---~g---~~~ 160 (190)
.....+.++|.++|.++++.+.... +..-..|+|+|++ ++.+..|||||+|||||+|.+ .+ .+.
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~-~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~ 240 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVG-LIKGGDLYVANVGDSRAVLGVVENNGSWLVAV 240 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEE-EEeCCeEEEEecCcchhhhceecCCCCeEEEE
Confidence 1134578999999999999997544 3443445555555 667999999999999999975 23 678
Q ss_pred ecCCCCCCc--hHHHHHHhC
Q 029671 161 QLSVDHEPS--KEKRLIESR 178 (190)
Q Consensus 161 ~Lt~dH~~~--~E~~RI~~~ 178 (190)
|||.||+.+ +|++||+..
T Consensus 241 qLS~dHn~~ne~Ev~Rir~e 260 (390)
T KOG0700|consen 241 QLSTDHNASNEDEVRRIRSE 260 (390)
T ss_pred ecChhhccccHHHHHHHHHh
Confidence 999999999 899999876
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.79 E-value=1.6e-18 Score=140.45 Aligned_cols=118 Identities=27% Similarity=0.376 Sum_probs=94.0
Q ss_pred CCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCCC--------------------------------------Cc--cc
Q 029671 61 KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPD--------------------------------------FW--TD 100 (190)
Q Consensus 61 ~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~--------------------------------------~~--~~ 100 (190)
+.-+..+|.+||||.|..+|-.++..+..++-+... .. .-
T Consensus 140 ~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~L 219 (493)
T KOG1323|consen 140 PRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHL 219 (493)
T ss_pred CCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHh
Confidence 456789999999999988887777666555543300 00 01
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCcceEEEEEEeCCEEEEEEcCCceEEEEeCCeeeecCCCCCCchHHHHHHhC
Q 029671 101 TESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESR 178 (190)
Q Consensus 101 ~~~~l~~~f~~~~~~l~~~~~~~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~~E~~RI~~~ 178 (190)
+..+|+.+|+++|++|..........||||+++++.--+++|+||.|||||+++|+++.++||++.+|..||+|++..
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~L 297 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQEL 297 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHH
Confidence 468899999999999987776655666666665565588999999999999999999999999999999999999875
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.62 E-value=1.1e-14 Score=113.58 Aligned_cols=125 Identities=23% Similarity=0.258 Sum_probs=73.6
Q ss_pred eccCCCCCCCCccEEEeecccCCCceEEEEEecCCcc----HHHHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHH
Q 029671 40 LVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLG----HDVANYLQTHLFDNILKEPDFWTD--TESAIRRAYHMTD 113 (190)
Q Consensus 40 s~~G~r~~~neD~~~i~~~~~~~~~~~l~~V~DGhgG----~~~a~~~~~~l~~~l~~~~~~~~~--~~~~l~~~f~~~~ 113 (190)
+++|.+. +|||++.+... .+..+++|+||+|+ +..|..++..+...+......... ....++....++.
T Consensus 4 sh~~~~~-~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T PF13672_consen 4 SHRGRGA-PNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEIL 78 (212)
T ss_dssp ---TTSS-S--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCC-CCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 4667776 89999985333 44467799999995 455666666666666666544332 2233333333333
Q ss_pred HHH-----HHhhcccCCCCcceEEEEEEeCCEEEEEEcCCceEEE-EeCCeeeecCCCCCCc
Q 029671 114 TKI-----LEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVI-SKNGVAKQLSVDHEPS 169 (190)
Q Consensus 114 ~~l-----~~~~~~~~~~g~Tt~~~~~~~~~~l~~anvGDSra~l-~r~g~~~~Lt~dH~~~ 169 (190)
..+ ...........+||++++++.++.++++|+||||+|+ .+++++.+++.||+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~ 140 (212)
T PF13672_consen 79 SIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGE 140 (212)
T ss_dssp HHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHH
T ss_pred HHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccch
Confidence 221 1111233366788988888989999999999999965 5799999999999744
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.33 E-value=2.6e-11 Score=98.17 Aligned_cols=110 Identities=23% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCCccEEEeecccCCCceEEEEEecCCcc--------HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHHh
Q 029671 48 AMEDYLVSEFKQEKDNELGLFAIFDGHLG--------HDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTDTKILEQ 119 (190)
Q Consensus 48 ~neD~~~i~~~~~~~~~~~l~~V~DGhgG--------~~~a~~~~~~l~~~l~~~~~~~~~~~~~l~~~f~~~~~~l~~~ 119 (190)
.-||++++.. .....+.|||||.|| +..+..+..++-+.+.+......++...|..+|.++-+ +
T Consensus 90 ~GEDa~Fvss----~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~----~ 161 (330)
T KOG1379|consen 90 GGEDAWFVSS----NPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKS----Q 161 (330)
T ss_pred CCCcceeecc----CcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhh----c
Confidence 5799999733 256679999999998 45677777777666666666667888889988887542 1
Q ss_pred hcccCCCCcceEEEEEEe-CCEEEEEEcCCceEEEEeCCeeeecCCCC
Q 029671 120 AFVLGKGGSTAVTAILIN-GQKLVVANVGDSRAVISKNGVAKQLSVDH 166 (190)
Q Consensus 120 ~~~~~~~g~Tt~~~~~~~-~~~l~~anvGDSra~l~r~g~~~~Lt~dH 166 (190)
. ....+++|+|++++.. +.+||+||+|||-..++|+|++..-|..+
T Consensus 162 ~-~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q 208 (330)
T KOG1379|consen 162 K-VPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQ 208 (330)
T ss_pred C-CCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchh
Confidence 1 1113455555554432 78999999999999999999777666554
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.28 E-value=1.9e-10 Score=88.38 Aligned_cols=124 Identities=15% Similarity=-0.022 Sum_probs=83.5
Q ss_pred eeEEEEeccCCCCCCCCccEEEeecccCCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 029671 34 ITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTD 113 (190)
Q Consensus 34 ~~~~~~s~~G~r~~~neD~~~i~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~l~~~f~~~~ 113 (190)
+.++.....+.. ..-|.+.+... .++..+++|+||||++..|.+++..+...+........ .+.+.+..+|
T Consensus 4 ~~~~~~~~p~~~--~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDATQ--VGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLN 74 (193)
T ss_pred eEEEEEEcchHh--cCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHH
Confidence 344444444443 47888865333 24478999999999888888888777776655433221 2666777888
Q ss_pred HHHHHhhcccCCCCcceEEEEEE--eCCEEEEEEcCCceEEEEe-CCeeeecCCCCCCc
Q 029671 114 TKILEQAFVLGKGGSTAVTAILI--NGQKLVVANVGDSRAVISK-NGVAKQLSVDHEPS 169 (190)
Q Consensus 114 ~~l~~~~~~~~~~g~Tt~~~~~~--~~~~l~~anvGDSra~l~r-~g~~~~Lt~dH~~~ 169 (190)
+.+..... ...++|++++++ ..++++++|+||+|+|+++ ++...+++.+.++.
T Consensus 75 ~~l~~~~~---~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~~ 130 (193)
T smart00331 75 RAIYENGE---DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLGAP 130 (193)
T ss_pred HHHHhcCC---CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCCce
Confidence 88866421 335666665565 5789999999999999998 66666666554433
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.10 E-value=2.5e-10 Score=103.55 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=120.4
Q ss_pred CCCcCCCCceeEEEEeccCCCCCCCCccEEEeecccCCCceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCCcccHHHH
Q 029671 25 KGKSKMSKHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESA 104 (190)
Q Consensus 25 ~~~~~~~~~~~~~~~s~~G~r~~~neD~~~i~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~ 104 (190)
.+.+...--+.+|++...|.|. ++--+.... ..+-+++...|+.+||-+..++.+.+...+.+.+.++.....+-.+.
T Consensus 513 ~d~~~n~~~~t~Gv~~~~gqrn-k~c~~~~~v-~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~ 590 (1081)
T KOG0618|consen 513 PDGNVNAFLWTYGVAGVSGQRN-KVCSRAVWV-ENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQ 590 (1081)
T ss_pred Cccccceeheeeccchhccccc-chhhhhhhh-hhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHH
Confidence 3344444558899999999988 555554422 33335667899999999999999999999999999887666555677
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCcceEEEEEEeC-------CEEEEEEcCCceEEEEeCCeeeecCCCCCCc---hHHHH
Q 029671 105 IRRAYHMTDTKILEQAFVLGKGGSTAVTAILING-------QKLVVANVGDSRAVISKNGVAKQLSVDHEPS---KEKRL 174 (190)
Q Consensus 105 l~~~f~~~~~~l~~~~~~~~~~g~Tt~~~~~~~~-------~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~---~E~~R 174 (190)
|+.+|...++++-+.+. ..|++.+++.+..+ .++.+||+|+|.++++++|+..++|+-.... +|.+|
T Consensus 591 mr~~fl~~~rklg~~g~---~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~R 667 (1081)
T KOG0618|consen 591 MRNTFLRLNRKLGEEGQ---VLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKR 667 (1081)
T ss_pred HHHHHHHHhhhhhhhhc---cccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHH
Confidence 99999999999955443 33666666655532 3699999999999999999999888766444 89999
Q ss_pred HHhCCcEEEc
Q 029671 175 IESRGGFVSN 184 (190)
Q Consensus 175 I~~~gG~v~~ 184 (190)
|+.++|+|..
T Consensus 668 I~~~~g~i~e 677 (1081)
T KOG0618|consen 668 IVDSKGFITE 677 (1081)
T ss_pred HHHhcCeecC
Confidence 9999999984
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.39 E-value=3.8e-06 Score=77.38 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=75.1
Q ss_pred CCCccEEEeecccCCCceEEEEEecCCccHHHHHHHHHHH---HHHHHcCCCCcccHHHHHHHHHHHHHHHHHHhhcccC
Q 029671 48 AMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHL---FDNILKEPDFWTDTESAIRRAYHMTDTKILEQAFVLG 124 (190)
Q Consensus 48 ~neD~~~i~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l---~~~l~~~~~~~~~~~~~l~~~f~~~~~~l~~~~~~~~ 124 (190)
.+.|.+.+... +++..+++|+||+|.+..|...+..+ +..+.+... + ...++..+|+.+.....
T Consensus 566 vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~---~----~~~ai~~lN~~L~~~~~--- 632 (764)
T TIGR02865 566 VSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGF---D----REVAIKTVNSILSLRST--- 632 (764)
T ss_pred ccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHhCCC---
Confidence 78999875332 34567899999999665555544433 333333221 1 35677778877754422
Q ss_pred CCCcceEEEEEEe--CCEEEEEEcCCceEEEEeCCeeeecCCCCCCc
Q 029671 125 KGGSTAVTAILIN--GQKLVVANVGDSRAVISKNGVAKQLSVDHEPS 169 (190)
Q Consensus 125 ~~g~Tt~~~~~~~--~~~l~~anvGDSra~l~r~g~~~~Lt~dH~~~ 169 (190)
....+|+.+++++ .+++.++|+|+++.|+.|++++.+++..+.|-
T Consensus 633 ~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lPl 679 (764)
T TIGR02865 633 DEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLPI 679 (764)
T ss_pred CCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCcee
Confidence 2346676666664 57899999999999999999999998877666
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.92 E-value=0.00013 Score=55.60 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=59.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHHhhcccCCCCcceEEEEEE--eCCE
Q 029671 63 NELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAILI--NGQK 140 (190)
Q Consensus 63 ~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~l~~~f~~~~~~l~~~~~~~~~~g~Tt~~~~~~--~~~~ 140 (190)
++..++.|+|+.|.+-.|.+++..+...+........+ ..+.+..+|+.+....... ...+|++++.+ ..+.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGT 75 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceE
Confidence 45678999998775544555444444433322111111 5566677777775444322 13444444444 3568
Q ss_pred EEEEEcCCceEEEEeC--CeeeecCCCCCC
Q 029671 141 LVVANVGDSRAVISKN--GVAKQLSVDHEP 168 (190)
Q Consensus 141 l~~anvGDSra~l~r~--g~~~~Lt~dH~~ 168 (190)
++++|+|+++++++++ +....+.....|
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~ 105 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLESEGPP 105 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEETCSSBB
T ss_pred EEEeCCCCCCEEEEeccccceeecccCccc
Confidence 9999999999999998 555555554444
No 19
>PRK10693 response regulator of RpoS; Provisional
Probab=88.03 E-value=6.7 Score=32.25 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=51.5
Q ss_pred CCceEEEEEec--CCccHH-HHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHHHHHHhhcccCCCCcceEEEEE-
Q 029671 62 DNELGLFAIFD--GHLGHD-VANYLQTHLFDNILKEP--DFWTDTESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAIL- 135 (190)
Q Consensus 62 ~~~~~l~~V~D--GhgG~~-~a~~~~~~l~~~l~~~~--~~~~~~~~~l~~~f~~~~~~l~~~~~~~~~~g~Tt~~~~~- 135 (190)
+++...|.++| |||++- .|..+...++..++... ..... .....+.+.++|+.+....... .-|.+.+++
T Consensus 160 ~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~-~~~p~~~l~~lN~~l~~~~~~~---~~t~~~~~~d 235 (303)
T PRK10693 160 SDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQR-LPELGALLKQVNHLLRQANLPG---QFPLLVGYYH 235 (303)
T ss_pred CCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccc-cCCHHHHHHHHHHHHHhcCCCc---eeeEEEEEEE
Confidence 34556677778 888653 44444445455444331 00000 0014566667787776543222 234444333
Q ss_pred EeCCEEEEEEcCCceEEEEeCCee
Q 029671 136 INGQKLVVANVGDSRAVISKNGVA 159 (190)
Q Consensus 136 ~~~~~l~~anvGDSra~l~r~g~~ 159 (190)
...+++.++|.|-...++..++++
T Consensus 236 ~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 236 RELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred cCCCeEEEEeCCCCCEEecCCeEE
Confidence 234689999999999886545544
No 20
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=49.63 E-value=42 Score=27.10 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=34.2
Q ss_pred ChHHHHHHhhhccccceeecCCCCCCcCCCCceeEEEEeccCCCCCCCCccEEEe------ecccCCC--------ceEE
Q 029671 2 NGKEILQKMKVKAGFCTSALDTGKGKSKMSKHITHGYHLVKGKSNHAMEDYLVSE------FKQEKDN--------ELGL 67 (190)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~r~~~neD~~~i~------~~~~~~~--------~~~l 67 (190)
++.++..||++++..-...-.+..-.......-.+-..++.+.+. -|++++. ...+++. ...-
T Consensus 68 ~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~---~~avI~atGAsAkRl~~pg~ge~~fWqrGiSa 144 (322)
T KOG0404|consen 68 TGPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPVT---ADAVILATGASAKRLHLPGEGEGEFWQRGISA 144 (322)
T ss_pred ccHHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEecCCcee---eeeEEEecccceeeeecCCCCcchHHhcccch
Confidence 567889999988764333222222222111111133444555443 6777651 1112222 2456
Q ss_pred EEEecC
Q 029671 68 FAIFDG 73 (190)
Q Consensus 68 ~~V~DG 73 (190)
++||||
T Consensus 145 CAVCDG 150 (322)
T KOG0404|consen 145 CAVCDG 150 (322)
T ss_pred hhcccC
Confidence 799999
No 21
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=40.64 E-value=27 Score=21.26 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.6
Q ss_pred hHHHHHHhCCcEEEc
Q 029671 170 KEKRLIESRGGFVSN 184 (190)
Q Consensus 170 ~E~~RI~~~gG~v~~ 184 (190)
.|.+||.+.||.|..
T Consensus 38 ~~~q~I~r~GGkIvs 52 (56)
T PF01383_consen 38 QEMQRINRQGGKIVS 52 (56)
T ss_dssp HHHHHHHHCT-EEEE
T ss_pred HHHHHHHHCCCEEEE
Confidence 899999999999874
No 22
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=32.98 E-value=52 Score=26.89 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=34.3
Q ss_pred EEEEEec-CCccHHHHHHHHHHHHHHHH----cC--CCCcccHHHHHHHHHHHHHHHHHHhh
Q 029671 66 GLFAIFD-GHLGHDVANYLQTHLFDNIL----KE--PDFWTDTESAIRRAYHMTDTKILEQA 120 (190)
Q Consensus 66 ~l~~V~D-GhgG~~~a~~~~~~l~~~l~----~~--~~~~~~~~~~l~~~f~~~~~~l~~~~ 120 (190)
.-++||| |.||-.+.+.+.+.++..=. +. .++.....+.|++.-.++-+.|.++.
T Consensus 6 ~~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ 67 (269)
T COG0796 6 PPIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG 67 (269)
T ss_pred CeEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4579999 89999999998887776322 22 12222335556655555555565544
No 23
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=30.93 E-value=54 Score=26.92 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=16.6
Q ss_pred CCCcceEEEEEEeCCEEEEEEcCCc
Q 029671 125 KGGSTAVTAILINGQKLVVANVGDS 149 (190)
Q Consensus 125 ~~g~Tt~~~~~~~~~~l~~anvGDS 149 (190)
.+|||++++ ++++.+|..|+|-+
T Consensus 131 LSGCT~i~A--~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 131 LSGCTMIYA--RKDNYFYAYHTGKS 153 (281)
T ss_dssp BSS-EEEEE--EETTEEEEEEEEES
T ss_pred cCCCEEEEE--EcCCeEEEEEcCCC
Confidence 455555554 56999999999977
No 24
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=25.37 E-value=1.2e+02 Score=16.09 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=13.9
Q ss_pred CCEEEEEEcCCceEEEEe
Q 029671 138 GQKLVVANVGDSRAVISK 155 (190)
Q Consensus 138 ~~~l~~anvGDSra~l~r 155 (190)
++++|++|-|+..+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 467888888888877775
No 25
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=24.36 E-value=44 Score=26.78 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEec-CCccHHHHHHHHHHHHH
Q 029671 68 FAIFD-GHLGHDVANYLQTHLFD 89 (190)
Q Consensus 68 ~~V~D-GhgG~~~a~~~~~~l~~ 89 (190)
.|||| |.||-.+.+.+.+.++.
T Consensus 1 IgvfDSGiGGltv~~~l~~~~p~ 23 (251)
T TIGR00067 1 IGVFDSGVGGLSVLKEIRKQLPK 23 (251)
T ss_pred CEEEeCCccHHHHHHHHHHHCCC
Confidence 48999 89999999998887764
No 26
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.22 E-value=79 Score=26.14 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=30.3
Q ss_pred CceEEEEeCCe-eeecCCCCCCc-hHHHH-HHhCCc----EEEcCCCCc
Q 029671 148 DSRAVISKNGV-AKQLSVDHEPS-KEKRL-IESRGG----FVSNIPGSS 189 (190)
Q Consensus 148 DSra~l~r~g~-~~~Lt~dH~~~-~E~~R-I~~~gG----~v~~~~g~~ 189 (190)
|||+|.+.++. +...-.||+.. +=|.+ +...+| .+...+.|+
T Consensus 104 DTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl 152 (297)
T COG3315 104 DTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDL 152 (297)
T ss_pred ccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccc
Confidence 99999999884 88999999888 44444 444453 566666655
No 27
>PRK00865 glutamate racemase; Provisional
Probab=23.07 E-value=57 Score=26.22 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEec-CCccHHHHHHHHHHHHHH
Q 029671 67 LFAIFD-GHLGHDVANYLQTHLFDN 90 (190)
Q Consensus 67 l~~V~D-GhgG~~~a~~~~~~l~~~ 90 (190)
-+|||| |.||-.+.+.+.+.++..
T Consensus 7 ~IgvfDSGiGGLtvl~~i~~~lp~~ 31 (261)
T PRK00865 7 PIGVFDSGVGGLTVLREIRRLLPDE 31 (261)
T ss_pred eEEEEECCccHHHHHHHHHHHCCCC
Confidence 489999 899999999988877653
No 28
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=22.66 E-value=1.9e+02 Score=23.45 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=55.9
Q ss_pred eEEEEEec-CCccHHHHHHHHHHHHHHHHcCCCCcccH--HHHHHHHHHHHHHHHHHhhcc-----cCCCCcceEEEEEE
Q 029671 65 LGLFAIFD-GHLGHDVANYLQTHLFDNILKEPDFWTDT--ESAIRRAYHMTDTKILEQAFV-----LGKGGSTAVTAILI 136 (190)
Q Consensus 65 ~~l~~V~D-GhgG~~~a~~~~~~l~~~l~~~~~~~~~~--~~~l~~~f~~~~~~l~~~~~~-----~~~~g~Tt~~~~~~ 136 (190)
...++|-| |+.-++.-....=++.+++++....+... .+.+-..|.++......-... .-..+.++++.++.
T Consensus 80 ~vavAvQDHG~~p~~SnR~~RF~~~~~~L~~g~~~~~~~y~~~~P~~~TRm~av~~~~~~~~~~~~vmDTg~AAvlGal~ 159 (254)
T PF08735_consen 80 VVAVAVQDHGFSPGQSNRIFRFELWREFLEEGGRPESFVYADDPPPYFTRMRAVRESLGGAGYDEVVMDTGPAAVLGALC 159 (254)
T ss_pred eeEEEecccCCCCCCccHHHHHHHHHHHHhcCCCHHHeeecCCCcHHHHHHHHHHHHhccCCCCceEecCHHHHHhhhhc
Confidence 47778888 44322333333335677777664332211 112333344443332211111 11234445555444
Q ss_pred e-----CCEEEEEEcCCceE--EEEeCCeeeecCCCCCCc
Q 029671 137 N-----GQKLVVANVGDSRA--VISKNGVAKQLSVDHEPS 169 (190)
Q Consensus 137 ~-----~~~l~~anvGDSra--~l~r~g~~~~Lt~dH~~~ 169 (190)
+ .+.+.+.|+|++=. .++.++++.-+=.-|+-.
T Consensus 160 d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~GvfEHHT~~ 199 (254)
T PF08735_consen 160 DPEVSSREGIIVVNIGNGHTLAALVKDGRIYGVFEHHTGM 199 (254)
T ss_pred ChhhhccCCeEEEEeCCccEEEEEEeCCEEEEEEecccCC
Confidence 3 34699999999874 577898888887777666
No 29
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.45 E-value=90 Score=23.18 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.5
Q ss_pred HHHHHHhCCcEEEcCCCCcC
Q 029671 171 EKRLIESRGGFVSNIPGSSF 190 (190)
Q Consensus 171 E~~RI~~~gG~v~~~~g~~~ 190 (190)
-..++...|+.|.+++|++|
T Consensus 77 LA~~ll~kg~~v~~prGr~y 96 (150)
T COG1671 77 LASLLLDKGAAVLNPRGRLY 96 (150)
T ss_pred HHHHHHhcCCEEECCCCccc
Confidence 44678999999999999997
No 30
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=21.19 E-value=42 Score=24.91 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=9.4
Q ss_pred ceEEEEEecC-CccHHH
Q 029671 64 ELGLFAIFDG-HLGHDV 79 (190)
Q Consensus 64 ~~~l~~V~DG-hgG~~~ 79 (190)
....+|.||| |-||+.
T Consensus 7 ~~v~iG~FDGvH~GHq~ 23 (157)
T PF06574_consen 7 SVVAIGNFDGVHLGHQK 23 (157)
T ss_dssp EEEEES--TT--HHHHH
T ss_pred cEEEEeCCCCccHHHHH
Confidence 4467899999 669853
Done!