Query 029673
Match_columns 190
No_of_seqs 151 out of 1578
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 16:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07394 MPP_Vps29 Homo sapiens 100.0 2.4E-37 5.1E-42 235.6 23.6 178 3-180 1-178 (178)
2 COG0622 Predicted phosphoester 100.0 7.2E-34 1.6E-38 214.0 19.2 164 1-171 1-168 (172)
3 KOG3325 Membrane coat complex 100.0 2E-31 4.3E-36 191.0 20.7 182 2-183 1-183 (183)
4 TIGR00040 yfcE phosphoesterase 100.0 2.2E-31 4.8E-36 199.0 19.1 155 2-163 1-157 (158)
5 PRK09453 phosphodiesterase; Pr 100.0 1.1E-28 2.4E-33 188.5 18.0 155 2-174 1-176 (182)
6 cd00841 MPP_YfcE Escherichia c 100.0 1.5E-28 3.1E-33 182.9 15.3 151 3-165 1-154 (155)
7 PF12850 Metallophos_2: Calcin 100.0 4.4E-27 9.6E-32 174.3 15.7 147 2-159 1-156 (156)
8 cd07388 MPP_Tt1561 Thermus the 99.9 7.4E-22 1.6E-26 154.9 16.5 147 2-162 5-222 (224)
9 PRK05340 UDP-2,3-diacylglucosa 99.9 3.7E-21 8E-26 153.1 16.4 152 2-164 1-236 (241)
10 cd07379 MPP_239FB Homo sapiens 99.9 1.5E-21 3.2E-26 142.2 12.1 114 3-134 1-135 (135)
11 COG2129 Predicted phosphoester 99.9 3.4E-21 7.3E-26 148.4 12.8 153 1-166 3-224 (226)
12 cd07400 MPP_YydB Bacillus subt 99.9 6.2E-21 1.3E-25 140.0 12.7 116 4-135 1-144 (144)
13 PRK11148 cyclic 3',5'-adenosin 99.8 8.8E-20 1.9E-24 147.8 16.2 172 2-173 15-266 (275)
14 TIGR01854 lipid_A_lpxH UDP-2,3 99.8 1.2E-19 2.6E-24 143.6 15.3 135 4-138 1-219 (231)
15 COG2908 Uncharacterized protei 99.8 6E-20 1.3E-24 142.7 12.4 148 5-163 1-231 (237)
16 cd07402 MPP_GpdQ Enterobacter 99.8 1.7E-19 3.7E-24 142.8 14.5 156 3-158 1-237 (240)
17 TIGR00583 mre11 DNA repair pro 99.8 6.3E-19 1.4E-23 149.1 16.9 181 1-182 3-307 (405)
18 cd07392 MPP_PAE1087 Pyrobaculu 99.8 2.3E-19 4.9E-24 136.7 12.0 126 4-134 1-188 (188)
19 cd07398 MPP_YbbF-LpxH Escheric 99.8 6.5E-19 1.4E-23 137.5 12.6 132 5-136 1-217 (217)
20 cd07395 MPP_CSTP1 Homo sapiens 99.8 2.9E-18 6.3E-23 137.8 13.7 163 2-168 5-262 (262)
21 cd07403 MPP_TTHA0053 Thermus t 99.8 3E-18 6.5E-23 124.0 12.0 109 5-134 1-122 (129)
22 cd07424 MPP_PrpA_PrpB PrpA and 99.8 7.3E-18 1.6E-22 131.3 11.6 132 2-138 1-198 (207)
23 cd00840 MPP_Mre11_N Mre11 nucl 99.8 3.2E-18 6.9E-23 133.8 9.0 136 3-138 1-219 (223)
24 PRK09968 serine/threonine-spec 99.8 9.8E-18 2.1E-22 131.6 11.7 130 3-137 16-208 (218)
25 PF14582 Metallophos_3: Metall 99.7 2.5E-17 5.4E-22 127.0 11.9 149 2-163 6-252 (255)
26 cd07383 MPP_Dcr2 Saccharomyces 99.7 2.8E-17 6E-22 127.1 11.1 137 2-138 3-194 (199)
27 cd07396 MPP_Nbla03831 Homo sap 99.7 2.2E-16 4.8E-21 127.4 16.8 156 2-162 1-265 (267)
28 cd07393 MPP_DR1119 Deinococcus 99.7 9.7E-17 2.1E-21 127.1 13.3 136 4-139 1-229 (232)
29 PHA02546 47 endonuclease subun 99.7 1.6E-16 3.5E-21 132.4 15.2 167 2-178 1-242 (340)
30 cd07390 MPP_AQ1575 Aquifex aeo 99.7 7.2E-17 1.6E-21 121.8 9.7 120 5-135 2-151 (168)
31 cd07404 MPP_MS158 Microscilla 99.7 7.1E-17 1.5E-21 121.3 8.7 128 4-133 1-163 (166)
32 PRK11340 phosphodiesterase Yae 99.7 5.3E-16 1.2E-20 125.5 13.6 66 2-67 50-125 (271)
33 PRK11439 pphA serine/threonine 99.7 2.7E-16 5.8E-21 123.5 10.1 131 2-137 17-208 (218)
34 cd07423 MPP_PrpE Bacillus subt 99.7 8.2E-16 1.8E-20 121.9 12.8 132 2-137 1-210 (234)
35 cd07397 MPP_DevT Myxococcus xa 99.7 3.6E-16 7.8E-21 123.3 10.3 62 2-68 1-64 (238)
36 PRK04036 DNA polymerase II sma 99.7 5E-15 1.1E-19 129.1 17.8 137 2-138 244-470 (504)
37 COG0420 SbcD DNA repair exonuc 99.7 3.4E-16 7.3E-21 132.7 10.1 165 2-168 1-259 (390)
38 cd07399 MPP_YvnB Bacillus subt 99.7 3.5E-15 7.6E-20 116.8 14.7 157 2-165 1-208 (214)
39 PF00149 Metallophos: Calcineu 99.7 2.8E-16 6E-21 115.5 7.6 119 2-120 1-200 (200)
40 cd07378 MPP_ACP5 Homo sapiens 99.6 1.3E-14 2.9E-19 117.3 15.6 168 2-169 1-276 (277)
41 PRK10966 exonuclease subunit S 99.6 3.6E-15 7.7E-20 126.9 12.4 65 108-175 220-287 (407)
42 TIGR03729 acc_ester putative p 99.6 6.9E-15 1.5E-19 116.9 13.0 131 3-133 1-235 (239)
43 cd00839 MPP_PAPs purple acid p 99.6 1.6E-14 3.6E-19 117.7 14.3 169 2-172 5-285 (294)
44 cd07385 MPP_YkuE_C Bacillus su 99.6 6.6E-15 1.4E-19 115.3 11.0 67 2-68 2-77 (223)
45 cd07386 MPP_DNA_pol_II_small_a 99.6 2.6E-14 5.7E-19 113.9 13.5 134 5-138 2-221 (243)
46 COG4186 Predicted phosphoester 99.6 2.1E-14 4.6E-19 104.5 10.2 123 1-123 3-151 (186)
47 cd00838 MPP_superfamily metall 99.6 4.5E-14 9.8E-19 100.1 10.6 111 5-134 1-131 (131)
48 TIGR00619 sbcd exonuclease Sbc 99.6 9.5E-15 2.1E-19 117.1 7.7 67 2-68 1-89 (253)
49 COG1409 Icc Predicted phosphoh 99.6 7.1E-14 1.5E-18 113.1 12.8 164 2-167 1-244 (301)
50 TIGR00024 SbcD_rel_arch putati 99.5 5.1E-14 1.1E-18 110.9 10.8 109 3-123 16-149 (225)
51 cd07391 MPP_PF1019 Pyrococcus 99.5 2.3E-14 4.9E-19 108.5 6.4 106 5-123 1-136 (172)
52 cd08165 MPP_MPPE1 human MPPE1 99.5 1.3E-13 2.7E-18 102.9 7.6 124 5-138 1-153 (156)
53 cd07401 MPP_TMEM62_N Homo sapi 99.4 4.2E-12 9.2E-17 102.0 13.0 64 4-67 2-89 (256)
54 cd07384 MPP_Cdc1_like Saccharo 99.4 4.7E-13 1E-17 101.3 6.9 107 22-138 36-168 (171)
55 PLN02533 probable purple acid 99.4 4.6E-11 1E-15 102.4 19.8 180 2-185 140-421 (427)
56 cd07425 MPP_Shelphs Shewanella 99.4 2.2E-12 4.7E-17 100.6 9.4 127 5-136 1-198 (208)
57 PRK13625 bis(5'-nucleosyl)-tet 99.4 1.6E-11 3.5E-16 98.0 13.0 145 2-159 1-225 (245)
58 PRK00166 apaH diadenosine tetr 99.3 3E-11 6.5E-16 97.8 12.9 64 2-67 1-69 (275)
59 KOG2310 DNA repair exonuclease 99.3 1.8E-10 3.9E-15 98.5 14.1 179 2-184 14-319 (646)
60 KOG1432 Predicted DNA repair e 99.2 5.4E-10 1.2E-14 91.1 15.5 70 103-173 294-366 (379)
61 COG1311 HYS2 Archaeal DNA poly 99.2 9.1E-11 2E-15 99.5 11.6 167 2-176 226-478 (481)
62 PTZ00422 glideosome-associated 99.2 7.8E-10 1.7E-14 93.1 17.1 104 80-183 214-332 (394)
63 COG1408 Predicted phosphohydro 99.2 4.2E-11 9.2E-16 97.3 9.2 66 2-68 45-119 (284)
64 cd08166 MPP_Cdc1_like_1 unchar 99.2 2.1E-10 4.6E-15 88.1 9.5 103 23-128 34-155 (195)
65 cd00845 MPP_UshA_N_like Escher 99.2 1.5E-09 3.3E-14 86.6 14.9 136 2-138 1-226 (252)
66 COG1768 Predicted phosphohydro 99.1 3.8E-10 8.3E-15 84.4 9.2 120 2-121 1-200 (230)
67 cd07410 MPP_CpdB_N Escherichia 99.1 2.7E-09 5.8E-14 86.6 14.9 37 102-138 211-249 (277)
68 COG1407 Predicted ICC-like pho 99.1 4.5E-10 9.8E-15 88.1 9.7 107 3-122 21-157 (235)
69 cd00144 MPP_PPP_family phospho 99.1 6.4E-10 1.4E-14 87.2 10.6 130 5-137 1-212 (225)
70 cd07406 MPP_CG11883_N Drosophi 99.1 1.5E-08 3.2E-13 81.5 16.7 136 2-138 1-225 (257)
71 cd07387 MPP_PolD2_C PolD2 (DNA 99.1 2.5E-08 5.5E-13 79.9 17.2 149 3-160 1-251 (257)
72 cd07408 MPP_SA0022_N Staphyloc 99.0 5.8E-09 1.2E-13 83.8 13.4 65 2-68 1-83 (257)
73 TIGR00668 apaH bis(5'-nucleosy 99.0 7.6E-10 1.6E-14 89.3 8.0 64 2-67 1-69 (279)
74 KOG2679 Purple (tartrate-resis 99.0 5.5E-09 1.2E-13 82.9 12.4 171 2-172 44-321 (336)
75 cd08163 MPP_Cdc1 Saccharomyces 99.0 6.5E-09 1.4E-13 83.6 10.4 41 27-67 41-97 (257)
76 PHA02239 putative protein phos 98.9 1.4E-09 3E-14 86.3 6.0 63 2-67 1-73 (235)
77 cd08164 MPP_Ted1 Saccharomyces 98.9 9E-09 2E-13 79.0 8.7 93 23-125 36-161 (193)
78 cd00842 MPP_ASMase acid sphing 98.9 1.3E-08 2.9E-13 83.1 9.6 38 30-67 67-122 (296)
79 cd07422 MPP_ApaH Escherichia c 98.9 3.3E-09 7.2E-14 85.1 5.5 63 4-68 1-68 (257)
80 cd07411 MPP_SoxB_N Thermus the 98.8 3.9E-07 8.5E-12 73.5 16.9 32 107-138 206-240 (264)
81 smart00156 PP2Ac Protein phosp 98.8 3E-07 6.5E-12 74.5 15.8 63 2-67 28-99 (271)
82 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.8 3.5E-08 7.7E-13 79.4 9.7 27 98-124 206-232 (262)
83 cd07412 MPP_YhcR_N Bacillus su 98.8 4.2E-07 9.1E-12 74.3 15.6 32 107-138 228-262 (288)
84 cd07405 MPP_UshA_N Escherichia 98.7 2.3E-06 5E-11 69.8 17.6 66 2-68 1-88 (285)
85 cd07380 MPP_CWF19_N Schizosacc 98.7 9E-08 2E-12 70.8 8.0 99 5-119 1-121 (150)
86 PRK09419 bifunctional 2',3'-cy 98.7 7.3E-07 1.6E-11 85.2 15.1 66 2-68 661-737 (1163)
87 cd07413 MPP_PA3087 Pseudomonas 98.6 9E-08 2E-12 75.4 6.1 60 5-67 2-76 (222)
88 cd07417 MPP_PP5_C PP5, C-termi 98.6 2.4E-06 5.1E-11 70.7 14.3 63 2-67 60-132 (316)
89 cd07421 MPP_Rhilphs Rhilph pho 98.6 9.8E-08 2.1E-12 77.5 5.3 63 3-67 3-80 (304)
90 cd07416 MPP_PP2B PP2B, metallo 98.5 3.7E-06 8E-11 69.3 14.1 62 3-67 44-114 (305)
91 KOG1378 Purple acid phosphatas 98.5 6.4E-06 1.4E-10 70.2 15.7 180 2-185 148-440 (452)
92 cd07409 MPP_CD73_N CD73 ecto-5 98.5 5.5E-06 1.2E-10 67.5 14.8 65 2-68 1-95 (281)
93 cd07414 MPP_PP1_PPKL PP1, PPKL 98.5 4.1E-06 8.8E-11 68.6 13.1 63 3-68 51-122 (293)
94 PTZ00480 serine/threonine-prot 98.5 9E-06 1.9E-10 67.2 14.8 62 3-67 60-130 (320)
95 PRK09558 ushA bifunctional UDP 98.4 9.9E-06 2.1E-10 71.9 15.5 65 2-68 35-122 (551)
96 cd07407 MPP_YHR202W_N Saccharo 98.4 1.2E-05 2.6E-10 65.6 14.8 31 108-138 218-250 (282)
97 cd07415 MPP_PP2A_PP4_PP6 PP2A, 98.4 1.2E-05 2.5E-10 65.7 14.4 62 3-67 43-113 (285)
98 PTZ00239 serine/threonine prot 98.4 2E-05 4.4E-10 64.8 15.1 62 3-67 44-114 (303)
99 cd07420 MPP_RdgC Drosophila me 98.4 1.7E-06 3.6E-11 71.6 8.1 64 3-68 52-124 (321)
100 PRK09419 bifunctional 2',3'-cy 98.4 1.5E-05 3.3E-10 76.4 15.5 37 102-138 261-312 (1163)
101 cd07419 MPP_Bsu1_C Arabidopsis 98.3 2.6E-05 5.6E-10 64.5 14.6 62 3-67 49-127 (311)
102 PTZ00244 serine/threonine-prot 98.3 3.1E-05 6.7E-10 63.5 14.3 61 4-67 54-123 (294)
103 cd07418 MPP_PP7 PP7, metalloph 98.2 3.5E-06 7.6E-11 70.9 6.7 63 3-68 67-139 (377)
104 TIGR01390 CycNucDiestase 2',3' 98.2 5.8E-05 1.2E-09 68.0 14.7 35 104-138 224-272 (626)
105 cd07382 MPP_DR1281 Deinococcus 98.2 4.2E-05 9.1E-10 61.4 12.3 134 3-138 1-200 (255)
106 TIGR01530 nadN NAD pyrophospha 98.2 4.5E-05 9.7E-10 67.8 13.4 66 2-68 1-95 (550)
107 TIGR00282 metallophosphoestera 98.2 5.3E-05 1.2E-09 61.1 12.3 135 2-137 1-202 (266)
108 PRK11907 bifunctional 2',3'-cy 98.2 8E-05 1.7E-09 68.6 14.8 36 103-138 337-390 (814)
109 PRK09418 bifunctional 2',3'-cy 98.2 8.5E-05 1.9E-09 68.2 14.9 34 105-138 274-307 (780)
110 PRK09420 cpdB bifunctional 2', 98.1 0.00011 2.5E-09 66.4 14.8 35 104-138 247-295 (649)
111 cd08162 MPP_PhoA_N Synechococc 98.0 0.00015 3.3E-09 60.0 12.9 66 2-68 1-92 (313)
112 KOG3662 Cell division control 98.0 1.9E-05 4.1E-10 66.8 7.1 67 2-68 49-145 (410)
113 COG0737 UshA 5'-nucleotidase/2 98.0 3.4E-05 7.3E-10 68.0 8.6 66 2-68 27-116 (517)
114 PF04042 DNA_pol_E_B: DNA poly 97.5 0.00048 1E-08 53.4 7.3 86 4-90 1-138 (209)
115 TIGR03767 P_acnes_RR metalloph 97.5 0.0011 2.3E-08 57.6 9.6 80 82-169 340-445 (496)
116 KOG0372 Serine/threonine speci 96.9 0.0032 7E-08 49.9 6.7 62 4-68 45-115 (303)
117 KOG0374 Serine/threonine speci 96.9 0.02 4.4E-07 47.7 11.8 62 4-68 61-132 (331)
118 KOG3947 Phosphoesterases [Gene 96.9 0.003 6.6E-08 50.7 6.5 58 2-68 62-127 (305)
119 COG1692 Calcineurin-like phosp 96.9 0.14 3.1E-06 40.7 15.4 85 2-87 1-114 (266)
120 KOG2863 RNA lariat debranching 96.8 0.0045 9.7E-08 51.6 6.5 64 2-67 1-88 (456)
121 KOG0373 Serine/threonine speci 96.6 0.0037 8.1E-08 48.8 4.4 61 4-68 48-118 (306)
122 KOG3770 Acid sphingomyelinase 96.3 0.014 3.1E-07 51.5 6.9 39 30-68 209-264 (577)
123 PF13277 YmdB: YmdB-like prote 95.3 0.27 5.9E-06 39.4 10.0 132 5-137 1-197 (253)
124 TIGR03768 RPA4764 metallophosp 95.2 0.048 1E-06 47.3 5.7 62 99-168 389-463 (492)
125 PTZ00235 DNA polymerase epsilo 95.1 0.061 1.3E-06 43.9 5.9 65 2-68 28-123 (291)
126 TIGR03768 RPA4764 metallophosp 94.8 0.18 3.9E-06 43.8 8.1 16 28-43 96-111 (492)
127 TIGR03767 P_acnes_RR metalloph 94.7 0.068 1.5E-06 46.7 5.4 15 29-43 93-107 (496)
128 KOG0371 Serine/threonine prote 94.4 0.053 1.1E-06 43.4 3.8 61 4-68 62-132 (319)
129 PHA03008 hypothetical protein; 93.5 0.27 5.9E-06 37.8 5.9 55 81-135 162-222 (234)
130 KOG2476 Uncharacterized conser 91.9 1.3 2.8E-05 38.4 8.5 62 2-65 6-76 (528)
131 KOG1625 DNA polymerase alpha-p 90.9 11 0.00025 33.6 14.0 130 22-157 363-578 (600)
132 KOG0375 Serine-threonine phosp 90.7 0.27 5.9E-06 41.3 3.3 61 4-67 90-159 (517)
133 KOG3818 DNA polymerase epsilon 90.6 0.94 2E-05 39.1 6.4 65 2-68 283-370 (525)
134 KOG4419 5' nucleotidase [Nucle 90.5 1.3 2.8E-05 39.6 7.4 67 2-68 43-135 (602)
135 smart00854 PGA_cap Bacterial c 89.7 1.4 3.1E-05 34.7 6.7 25 44-68 63-87 (239)
136 PF06874 FBPase_2: Firmicute f 89.3 0.21 4.6E-06 44.7 1.8 57 101-159 512-577 (640)
137 KOG0376 Serine-threonine phosp 87.3 0.86 1.9E-05 39.6 4.1 64 2-67 214-286 (476)
138 cd07381 MPP_CapA CapA and rela 86.5 2.3 5E-05 33.5 6.0 53 79-131 175-231 (239)
139 PF09423 PhoD: PhoD-like phosp 84.2 1.6 3.4E-05 38.0 4.4 38 2-42 106-143 (453)
140 PRK01395 V-type ATP synthase s 79.4 2.4 5.2E-05 29.3 3.0 64 1-65 3-82 (104)
141 KOG0377 Protein serine/threoni 78.7 9.9 0.00022 33.1 7.0 35 34-68 195-238 (631)
142 PF09587 PGA_cap: Bacterial ca 74.7 12 0.00025 29.8 6.2 57 79-135 184-245 (250)
143 COG3855 Fbp Uncharacterized pr 71.5 2.1 4.6E-05 37.3 1.3 45 23-68 182-231 (648)
144 PRK02228 V-type ATP synthase s 71.3 6.7 0.00014 26.8 3.5 62 2-63 1-80 (100)
145 COG0639 ApaH Diadenosine tetra 65.9 7.2 0.00016 27.2 3.0 76 82-159 45-124 (155)
146 PRK01189 V-type ATP synthase s 63.1 9.8 0.00021 26.2 3.0 64 2-65 3-85 (104)
147 PRK03957 V-type ATP synthase s 61.8 8.5 0.00018 26.3 2.5 62 2-64 1-76 (100)
148 COG5214 POL12 DNA polymerase a 61.1 1E+02 0.0022 26.9 9.2 67 2-68 305-398 (581)
149 COG2248 Predicted hydrolase (m 55.6 13 0.00028 30.1 2.9 36 2-42 177-212 (304)
150 COG0761 lytB 4-Hydroxy-3-methy 55.3 24 0.00052 29.0 4.4 109 1-123 1-129 (294)
151 cd01141 TroA_d Periplasmic bin 51.6 31 0.00068 25.6 4.5 34 29-62 67-100 (186)
152 cd01149 HutB Hemin binding pro 49.9 35 0.00076 26.4 4.7 33 29-61 56-88 (235)
153 COG0561 Cof Predicted hydrolas 48.2 67 0.0015 25.3 6.1 54 1-55 1-59 (264)
154 PRK12360 4-hydroxy-3-methylbut 48.1 35 0.00077 27.9 4.4 83 32-124 31-132 (281)
155 COG0716 FldA Flavodoxins [Ener 47.6 67 0.0015 23.2 5.6 33 1-34 1-33 (151)
156 PRK01045 ispH 4-hydroxy-3-meth 47.2 1.6E+02 0.0036 24.3 9.2 82 32-125 30-130 (298)
157 TIGR01101 V_ATP_synt_F vacuola 45.6 30 0.00066 24.3 3.3 43 20-62 49-93 (115)
158 cd02067 B12-binding B12 bindin 44.6 65 0.0014 22.1 4.9 44 23-66 19-62 (119)
159 TIGR01768 GGGP-family geranylg 43.3 75 0.0016 25.1 5.5 44 25-68 21-69 (223)
160 PF02350 Epimerase_2: UDP-N-ac 43.3 21 0.00045 30.0 2.5 22 22-43 58-79 (346)
161 COG1433 Uncharacterized conser 42.2 57 0.0012 23.2 4.2 38 23-62 57-94 (121)
162 PRK13600 putative ribosomal pr 42.1 90 0.002 20.6 4.9 40 22-62 20-63 (84)
163 cd06295 PBP1_CelR Ligand bindi 41.7 64 0.0014 25.1 5.1 39 22-60 55-93 (275)
164 PF00072 Response_reg: Respons 41.4 76 0.0016 20.7 4.8 44 23-66 35-83 (112)
165 PF13727 CoA_binding_3: CoA-bi 40.0 24 0.00052 25.6 2.2 41 21-61 131-175 (175)
166 PRK04169 geranylgeranylglycery 40.0 83 0.0018 25.0 5.3 44 25-68 26-74 (232)
167 TIGR01769 GGGP geranylgeranylg 39.4 92 0.002 24.2 5.4 44 25-68 18-67 (205)
168 COG3540 PhoD Phosphodiesterase 38.3 18 0.00039 31.8 1.4 27 96-122 392-420 (522)
169 cd01425 RPS2 Ribosomal protein 36.7 75 0.0016 24.3 4.5 39 29-67 125-177 (193)
170 COG2923 DsrF Uncharacterized p 36.2 45 0.00097 23.6 2.8 40 1-41 1-43 (118)
171 PF03808 Glyco_tran_WecB: Glyc 36.1 38 0.00083 25.3 2.8 70 45-115 39-108 (172)
172 cd05312 NAD_bind_1_malic_enz N 35.1 76 0.0016 26.0 4.5 70 23-92 97-170 (279)
173 PRK14093 UDP-N-acetylmuramoyla 34.2 25 0.00055 30.8 1.7 30 33-62 370-408 (479)
174 PLN00416 carbonate dehydratase 33.6 76 0.0017 25.6 4.2 66 55-122 79-153 (258)
175 TIGR03568 NeuC_NnaA UDP-N-acet 32.5 76 0.0017 26.7 4.3 43 22-64 84-128 (365)
176 PF10957 DUF2758: Protein of u 32.1 51 0.0011 20.3 2.4 25 1-29 1-25 (60)
177 PF03437 BtpA: BtpA family; I 32.1 1.2E+02 0.0026 24.4 5.2 59 4-62 141-208 (254)
178 cd00762 NAD_bind_malic_enz NAD 32.0 94 0.002 25.1 4.5 71 23-93 98-172 (254)
179 PLN02154 carbonic anhydrase 31.7 87 0.0019 25.8 4.3 66 55-122 106-179 (290)
180 PF06925 MGDG_synth: Monogalac 31.1 45 0.00097 24.6 2.4 31 21-52 79-110 (169)
181 PRK10773 murF UDP-N-acetylmura 30.6 31 0.00066 30.0 1.6 57 4-62 327-392 (453)
182 PRK05647 purN phosphoribosylgl 30.1 2.5E+02 0.0054 21.5 6.5 55 1-60 1-57 (200)
183 cd07381 MPP_CapA CapA and rela 29.2 1.5E+02 0.0033 23.0 5.3 25 44-68 67-91 (239)
184 COG2201 CheB Chemotaxis respon 29.0 1.2E+02 0.0027 25.7 4.8 56 1-62 1-82 (350)
185 smart00854 PGA_cap Bacterial c 28.9 1.6E+02 0.0035 23.0 5.4 62 22-86 64-132 (239)
186 COG1436 NtpG Archaeal/vacuolar 28.9 1.9E+02 0.004 19.9 5.0 62 1-62 2-81 (104)
187 PF13258 DUF4049: Domain of un 28.6 80 0.0017 25.4 3.4 16 53-68 126-141 (318)
188 PRK09982 universal stress prot 28.2 61 0.0013 22.9 2.7 31 82-119 83-113 (142)
189 COG0378 HypB Ni2+-binding GTPa 28.0 1.3E+02 0.0028 23.4 4.5 49 18-67 28-80 (202)
190 cd06533 Glyco_transf_WecG_TagA 28.0 49 0.0011 24.7 2.2 36 79-115 71-106 (171)
191 TIGR01012 Sa_S2_E_A ribosomal 27.9 1.2E+02 0.0026 23.4 4.3 39 30-68 107-159 (196)
192 cd07389 MPP_PhoD Bacillus subt 27.8 94 0.002 23.8 3.8 15 28-42 26-40 (228)
193 TIGR00236 wecB UDP-N-acetylglu 27.8 1.2E+02 0.0025 25.1 4.6 39 22-60 77-116 (365)
194 COG1358 RPL8A Ribosomal protei 27.7 1.7E+02 0.0037 20.6 4.7 45 22-66 34-82 (116)
195 cd02812 PcrB_like PcrB_like pr 27.1 1.4E+02 0.003 23.5 4.6 47 21-67 15-67 (219)
196 PRK06932 glycerate dehydrogena 27.1 2.2E+02 0.0047 23.6 6.0 48 1-50 1-63 (314)
197 cd00883 beta_CA_cladeA Carboni 27.0 1.6E+02 0.0034 22.3 4.8 76 46-123 15-95 (182)
198 cd06297 PBP1_LacI_like_12 Liga 27.0 1.4E+02 0.003 23.2 4.8 38 23-60 47-84 (269)
199 PF01884 PcrB: PcrB family; I 27.0 2E+02 0.0042 22.9 5.4 49 20-68 21-73 (230)
200 COG1609 PurR Transcriptional r 26.9 1.4E+02 0.0031 24.7 5.0 69 21-90 104-185 (333)
201 PTZ00215 ribose 5-phosphate is 26.7 60 0.0013 24.0 2.3 33 2-39 3-37 (151)
202 TIGR00640 acid_CoA_mut_C methy 26.6 1.6E+02 0.0035 21.0 4.6 11 29-39 51-61 (132)
203 COG2382 Fes Enterochelin ester 26.3 94 0.002 25.7 3.6 34 34-67 241-282 (299)
204 TIGR03659 IsdE heme ABC transp 26.3 1.3E+02 0.0028 24.2 4.5 32 29-61 89-120 (289)
205 PF02421 FeoB_N: Ferrous iron 26.2 79 0.0017 23.4 3.0 44 24-67 71-118 (156)
206 COG0052 RpsB Ribosomal protein 26.1 1.6E+02 0.0035 23.7 4.8 27 31-57 156-182 (252)
207 cd01143 YvrC Periplasmic bindi 26.0 1.3E+02 0.0028 22.1 4.3 33 29-62 58-90 (195)
208 cd03786 GT1_UDP-GlcNAc_2-Epime 25.8 1.4E+02 0.003 24.4 4.7 42 22-63 79-121 (363)
209 PRK03379 vitamin B12-transport 25.7 1.3E+02 0.0028 23.8 4.4 33 29-61 70-102 (260)
210 PLN03014 carbonic anhydrase 25.5 1.2E+02 0.0025 25.8 4.1 66 55-122 159-233 (347)
211 PLN03064 alpha,alpha-trehalose 25.4 89 0.0019 30.2 3.8 22 31-52 789-812 (934)
212 cd06273 PBP1_GntR_like_1 This 25.3 1.7E+02 0.0037 22.5 5.0 34 27-60 51-84 (268)
213 COG0434 SgcQ Predicted TIM-bar 24.7 3.4E+02 0.0073 21.9 6.3 60 3-62 145-213 (263)
214 cd01542 PBP1_TreR_like Ligand- 24.4 1.8E+02 0.0038 22.2 4.9 34 27-60 51-84 (259)
215 PF03949 Malic_M: Malic enzyme 24.4 55 0.0012 26.4 1.9 70 23-92 98-171 (255)
216 COG0381 WecB UDP-N-acetylgluco 24.2 1.4E+02 0.0031 25.6 4.4 22 22-43 83-104 (383)
217 COG2875 CobM Precorrin-4 methy 24.2 85 0.0018 25.1 2.9 37 31-67 76-116 (254)
218 TIGR02855 spore_yabG sporulati 24.0 74 0.0016 26.0 2.6 25 95-119 140-165 (283)
219 TIGR02855 spore_yabG sporulati 24.0 58 0.0013 26.6 2.0 22 18-39 140-161 (283)
220 TIGR00215 lpxB lipid-A-disacch 23.9 1.9E+02 0.004 24.5 5.2 37 23-60 81-119 (385)
221 cd06299 PBP1_LacI_like_13 Liga 23.7 1.9E+02 0.0041 22.2 4.9 34 27-60 51-84 (265)
222 cd02071 MM_CoA_mut_B12_BD meth 23.7 2E+02 0.0042 19.9 4.5 40 24-63 20-59 (122)
223 PRK04020 rps2P 30S ribosomal p 23.4 1.6E+02 0.0035 22.9 4.3 39 30-68 113-165 (204)
224 COG1911 RPL30 Ribosomal protei 23.4 2.5E+02 0.0054 19.2 5.0 43 25-67 29-74 (100)
225 PF02579 Nitro_FeMo-Co: Dinitr 23.4 1.8E+02 0.004 18.6 4.1 37 22-60 44-80 (94)
226 PRK00087 4-hydroxy-3-methylbut 23.4 5.9E+02 0.013 23.4 9.2 82 32-125 30-130 (647)
227 cd00884 beta_CA_cladeB Carboni 23.0 1.6E+02 0.0035 22.5 4.2 23 100-122 77-100 (190)
228 PRK13196 pyrrolidone-carboxyla 23.0 57 0.0012 25.4 1.7 19 21-39 51-69 (211)
229 PF10686 DUF2493: Protein of u 22.9 1.2E+02 0.0025 19.3 2.9 58 2-61 4-64 (71)
230 cd00562 NifX_NifB This CD repr 22.6 1.7E+02 0.0037 19.0 3.9 38 23-62 53-90 (102)
231 cd02068 radical_SAM_B12_BD B12 22.3 2.2E+02 0.0047 19.6 4.6 44 23-66 31-78 (127)
232 PF02310 B12-binding: B12 bind 22.2 97 0.0021 21.0 2.7 41 22-62 19-59 (121)
233 cd06271 PBP1_AglR_RafR_like Li 21.6 2.1E+02 0.0045 21.9 4.8 39 22-60 50-88 (268)
234 cd08059 MPN_prok_mb Mpr1p, Pad 21.6 2.1E+02 0.0045 18.9 4.2 38 78-116 54-92 (101)
235 TIGR01011 rpsB_bact ribosomal 21.5 1.9E+02 0.0042 22.7 4.5 38 30-67 154-205 (225)
236 PRK12311 rpsB 30S ribosomal pr 21.5 1.8E+02 0.0038 24.5 4.4 39 30-68 151-203 (326)
237 cd06298 PBP1_CcpA_like Ligand- 21.5 2E+02 0.0042 22.1 4.6 33 28-60 52-84 (268)
238 PRK12480 D-lactate dehydrogena 21.3 2.4E+02 0.0053 23.5 5.3 22 30-51 44-66 (330)
239 TIGR01481 ccpA catabolite cont 21.2 2.2E+02 0.0048 22.9 5.0 34 27-60 111-144 (329)
240 cd01139 TroA_f Periplasmic bin 20.8 1.5E+02 0.0034 24.2 4.1 33 29-61 89-125 (342)
241 COG2262 HflX GTPases [General 20.8 2.9E+02 0.0063 24.0 5.6 62 5-66 242-316 (411)
242 cd01984 AANH_like Adenine nucl 20.7 1.1E+02 0.0024 19.4 2.6 24 98-121 38-61 (86)
243 PF05582 Peptidase_U57: YabG p 20.7 70 0.0015 26.2 1.9 21 19-39 142-162 (287)
244 PF14639 YqgF: Holliday-juncti 20.7 94 0.002 22.8 2.4 23 21-43 53-75 (150)
245 cd00851 MTH1175 This uncharact 20.6 1.9E+02 0.0041 18.9 3.8 38 22-61 54-91 (103)
246 PRK13195 pyrrolidone-carboxyla 20.6 67 0.0015 25.3 1.7 19 22-40 52-70 (222)
247 cd03825 GT1_wcfI_like This fam 20.5 94 0.002 25.0 2.7 11 2-12 1-11 (365)
248 TIGR02707 butyr_kinase butyrat 20.5 1.5E+02 0.0032 25.0 3.9 34 31-65 293-331 (351)
249 TIGR03677 rpl7ae 50S ribosomal 20.4 2.4E+02 0.0052 19.6 4.3 43 23-66 34-80 (117)
250 cd01575 PBP1_GntR Ligand-bindi 20.3 2.5E+02 0.0054 21.4 5.0 37 27-64 51-87 (268)
No 1
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=100.00 E-value=2.4e-37 Score=235.59 Aligned_cols=178 Identities=72% Similarity=1.246 Sum_probs=155.6
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecCCcccccCCCCceEEEECCEE
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFK 82 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~ 82 (190)
+|+++||+|++.+...+.+.+.+++++.++|.|+|+||+++.++++.|++++.++++|.||||....+|....++++|++
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~~~~~~~l~~~~~~~~~V~GN~D~~~~lp~~~~~~~~g~~ 80 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSKETYDYLKTIAPDVHIVRGDFDENLNYPETKVITVGQFK 80 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCCHHHHHHHHhhCCceEEEECCCCccccCCCcEEEEECCEE
Confidence 58999999976555456677888886678999999999999999999988766799999999987788999999999999
Q ss_pred EEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCCeEE
Q 029673 83 LGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVV 162 (190)
Q Consensus 83 i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~~~~ 162 (190)
|+++||+++.++...+.+..+++..++|+++|||||.+.....++++++||||++.++.+++..+.++|++++++++.++
T Consensus 81 i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p~~~~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~ 160 (178)
T cd07394 81 IGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKFEAFEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVV 160 (178)
T ss_pred EEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcceEEEECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEE
Confidence 99999998777666667777777789999999999999998999999999999997655445566789999999999999
Q ss_pred EEEEEeeCCeEEEEEEEE
Q 029673 163 VYVYELIDGEVKVDKIDF 180 (190)
Q Consensus 163 ~~~~~i~~~~~~~~~~~~ 180 (190)
++++++.+++++++.++|
T Consensus 161 ~~~~~l~~~~~~~~~~~~ 178 (178)
T cd07394 161 TYVYQLIDGEVKVEKIEY 178 (178)
T ss_pred EEEEEEECCcEEEEEecC
Confidence 999999999999998875
No 2
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=100.00 E-value=7.2e-34 Score=214.04 Aligned_cols=164 Identities=31% Similarity=0.439 Sum_probs=143.2
Q ss_pred CeEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCHHHHHHHhh-hCCcEEEecCCccccc---CCCCceEE
Q 029673 1 MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKI-ICPDLHIIRGEYDEET---RYPETKTL 76 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~-l~~~~~~v~GNHD~~~---~~p~~~~~ 76 (190)
||||+++||+|++.+ ..++..++....++|+||++||++.+..+..++. +..++++|.||+|... .+|+...+
T Consensus 1 ~m~ilviSDtH~~~~---~~~~~~~~~~~~~~d~vih~GD~~~~~~~~~l~~~~~~~i~~V~GN~D~~~~~~~~p~~~~~ 77 (172)
T COG0622 1 MMKILVISDTHGPLR---AIEKALKIFNLEKVDAVIHAGDSTSPFTLDALEGGLAAKLIAVRGNCDGEVDQEELPEELVL 77 (172)
T ss_pred CcEEEEEeccCCChh---hhhHHHHHhhhcCCCEEEECCCcCCccchHHhhcccccceEEEEccCCCccccccCChhHeE
Confidence 899999999998643 2344566667889999999999999888888888 5788999999999986 78999999
Q ss_pred EECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEE
Q 029673 77 TIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDI 156 (190)
Q Consensus 77 ~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~ 156 (190)
+++|.||+++||+.+.+..+...+..+++..++|++++||||.+...+.+++.++||||++.++ .. .+.+|+++++
T Consensus 78 ~~~g~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~~~~~~~i~~vNPGS~s~pr---~~-~~~sy~il~~ 153 (172)
T COG0622 78 EVGGVKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVAEKVGGILLVNPGSVSGPR---GG-NPASYAILDV 153 (172)
T ss_pred EECCEEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCCcccEEEECCEEEEcCCCcCCCC---CC-CCcEEEEEEc
Confidence 9999999999999887777888888999999999999999999999999999999999999863 23 5669999999
Q ss_pred eCCeEEEEEEEeeCC
Q 029673 157 DGLRVVVYVYELIDG 171 (190)
Q Consensus 157 ~~~~~~~~~~~i~~~ 171 (190)
++.++++.+......
T Consensus 154 ~~~~~~~~~~~~~~~ 168 (172)
T COG0622 154 DNLEVEVLFLERDRA 168 (172)
T ss_pred CCCEEEEEEeecccc
Confidence 999988887776543
No 3
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-31 Score=191.04 Aligned_cols=182 Identities=72% Similarity=1.232 Sum_probs=172.4
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecCCcccccCCCCceEEEECCE
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQF 81 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~ 81 (190)
|-+++++|.|.++++.+++++|.+++-..+...|+|+|.+...|.+++|+.+...+.+|+|.-|.....|+..+++.+.+
T Consensus 1 mLvL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlcs~e~~dylk~l~~dvhiVrGeFD~~~~yP~~kvvtvGqf 80 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLCSKESYDYLKTLSSDVHIVRGEFDENLKYPENKVVTVGQF 80 (183)
T ss_pred CEEEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcchHHHHHHHHhhCCCcEEEecccCccccCCccceEEeccE
Confidence 56789999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCC-CCCcEEEEEEeCCe
Q 029673 82 KLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYD-VNPSFVLMDIDGLR 160 (190)
Q Consensus 82 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~-~~~~y~ll~~~~~~ 160 (190)
+|.++||+...||++++.+..++|+.++|++++||||....++.+|..++||||...+++....+ ..|+|+++++++..
T Consensus 81 kIG~chGhqViP~gd~~sL~~LaRqldvDILl~G~Th~f~Aye~eg~ffvnPGSaTGAfn~~~t~~~~PSFvLmDiqg~~ 160 (183)
T KOG3325|consen 81 KIGLCHGHQVIPWGDPESLALLARQLDVDILLTGHTHKFEAYEHEGKFFVNPGSATGAFNVSDTDIIVPSFVLMDIQGST 160 (183)
T ss_pred EEEeecCcEeecCCCHHHHHHHHHhcCCcEEEeCCceeEEEEEeCCcEEeCCCcccCCCcccccCCCCCceEEEEecCCE
Confidence 99999999999999999999999999999999999999999999999999999999988654444 78999999999999
Q ss_pred EEEEEEEeeCCeEEEEEEEEeeC
Q 029673 161 VVVYVYELIDGEVKVDKIDFKKT 183 (190)
Q Consensus 161 ~~~~~~~i~~~~~~~~~~~~~~~ 183 (190)
+...++++-++++++..++|.|.
T Consensus 161 ~v~YvY~lidgeVkVdki~ykK~ 183 (183)
T KOG3325|consen 161 VVTYVYRLIDGEVKVDKIEYKKP 183 (183)
T ss_pred EEEEEeeeeCCcEEEEEEEecCC
Confidence 99999999999999999999874
No 4
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=100.00 E-value=2.2e-31 Score=199.04 Aligned_cols=155 Identities=30% Similarity=0.486 Sum_probs=128.1
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCC-CccEEEEcCCCCCHHHHHHHhhhCCcEEEecCCcccc-cCCCCceEEEEC
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPG-KIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEE-TRYPETKTLTIG 79 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~-~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~-~~~p~~~~~~~~ 79 (190)
|||+++||+|++.. . .+.+.++++.. ++|.|+++||+++.++++.++++..|+++|+||||.. ..+|....++++
T Consensus 1 m~i~viSD~H~~~~--~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~l~~~~~~~~~V~GN~D~~~~~~~~~~~~~~~ 77 (158)
T TIGR00040 1 MKILVISDTHGPLR--A-TELPVELFNLESNVDLVIHAGDLTSPFVLKEFEDLAAKVIAVRGNNDGERDELPEEEIFEAE 77 (158)
T ss_pred CEEEEEecccCCcc--h-hHhHHHHHhhccCCCEEEEcCCCCCHHHHHHHHHhCCceEEEccCCCchhhhCCcceEEEEC
Confidence 89999999998543 2 23444555555 8999999999999888899988877899999999975 468888889999
Q ss_pred CEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCC
Q 029673 80 QFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGL 159 (190)
Q Consensus 80 ~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~ 159 (190)
|.+|+++||++..+....+.+..+++..+++++++||+|.+.....+++.++||||++.++ . ...++|++++++++
T Consensus 78 g~~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~~~~~~~~iNpGs~~~~~---~-~~~~~~~il~~~~~ 153 (158)
T TIGR00040 78 GIDFGLVHGDLVYPRGDLLVLEYLAKELGVDVLIFGHTHIPVAEELRGILLINPGSLTGPR---N-GNTPSYAILDVDKD 153 (158)
T ss_pred CEEEEEEeCcccccCCCHHHHHHHHhccCCCEEEECCCCCCccEEECCEEEEECCcccccc---C-CCCCeEEEEEecCC
Confidence 9999999999766655566666677777899999999999999889999999999999752 2 23689999999988
Q ss_pred eEEE
Q 029673 160 RVVV 163 (190)
Q Consensus 160 ~~~~ 163 (190)
.++.
T Consensus 154 ~~~~ 157 (158)
T TIGR00040 154 KVTA 157 (158)
T ss_pred eEEe
Confidence 7764
No 5
>PRK09453 phosphodiesterase; Provisional
Probab=99.96 E-value=1.1e-28 Score=188.53 Aligned_cols=155 Identities=28% Similarity=0.372 Sum_probs=119.7
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-------------HHHHHHHhhhCCcEEEecCCccccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-------------KEVHDYLKIICPDLHIIRGEYDEET 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-------------~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
|||+++||+|++.. . .+++.+.+++.++|.|+++||+++ .++++.|++++.++++|+||||...
T Consensus 1 mri~viSD~Hg~~~--~-~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~~~ 77 (182)
T PRK09453 1 MKLMFASDTHGSLP--A-TEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSEV 77 (182)
T ss_pred CeEEEEEeccCCHH--H-HHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcchh
Confidence 89999999997421 2 344566666789999999999985 3467778777778999999999753
Q ss_pred -----CCCC---ceEEEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCC
Q 029673 69 -----RYPE---TKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAF 140 (190)
Q Consensus 69 -----~~p~---~~~~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~ 140 (190)
.+|. ...+++++.+|+++||++..+ + .+++..++|++++||+|.+.....+++.++||||++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~g~~i~l~HG~~~~~----~---~~~~~~~~d~vi~GHtH~p~~~~~~~~~~iNpGs~~~p- 149 (182)
T PRK09453 78 DQMLLHFPIMAPYQQVLLEGKRLFLTHGHLYGP----E---NLPALHDGDVLVYGHTHIPVAEKQGGIILFNPGSVSLP- 149 (182)
T ss_pred hhhccCCcccCceEEEEECCeEEEEECCCCCCh----h---hcccccCCCEEEECCCCCCcceEECCEEEEECCCcccc-
Confidence 2333 245778999999999987542 1 12345678999999999999999999999999999975
Q ss_pred CCCCCCCCCcEEEEEEeCCeEEEEEEEeeCCeEE
Q 029673 141 SSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVK 174 (190)
Q Consensus 141 ~~~~~~~~~~y~ll~~~~~~~~~~~~~i~~~~~~ 174 (190)
+ +.+.++|++++++ +++++.+.++++.
T Consensus 150 --~-~~~~~s~~il~~~----~~~~~~~~~~~~~ 176 (182)
T PRK09453 150 --K-GGYPASYGILDDN----VLSVIDLEGGEVI 176 (182)
T ss_pred --C-CCCCCeEEEEECC----cEEEEECCCCeEE
Confidence 2 3567899999974 5677788877743
No 6
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.96 E-value=1.5e-28 Score=182.93 Aligned_cols=151 Identities=25% Similarity=0.341 Sum_probs=115.9
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecCCccccc---CCCCceEEEEC
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEET---RYPETKTLTIG 79 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~---~~p~~~~~~~~ 79 (190)
||+++||+|++. ...+++.+.++ ++|.|+++||+++......+ ....++++|+||||... .+|....++.+
T Consensus 1 ~i~~isD~H~~~---~~~~~~~~~~~--~~d~ii~~GD~~~~~~~~~~-~~~~~~~~V~GNhD~~~~~~~~p~~~~~~~~ 74 (155)
T cd00841 1 KIGVISDTHGSL---ELLEKALELFG--DVDLIIHAGDVLYPGPLNEL-ELKAPVIAVRGNCDGEVDFPILPEEAVLEIG 74 (155)
T ss_pred CEEEEecCCCCH---HHHHHHHHHhc--CCCEEEECCccccccccchh-hcCCcEEEEeCCCCCcCCcccCCceEEEEEC
Confidence 689999999853 22334444443 39999999999984322223 23467999999999976 67888889999
Q ss_pred CEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCC
Q 029673 80 QFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGL 159 (190)
Q Consensus 80 ~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~ 159 (190)
+.+++++||++......... ..+++..+++++++||+|.+.....+++.++||||++.++ . .+.++|+++++++
T Consensus 75 g~~i~v~Hg~~~~~~~~~~~-~~~~~~~~~d~vi~GHtH~~~~~~~~~~~~inpGs~~~~~---~-~~~~~~~i~~~~~- 148 (155)
T cd00841 75 GKRIFLTHGHLYGVKNGLDR-LYLAKEGGADVVLYGHTHIPVIEKIGGVLLLNPGSLSLPR---G-GGPPTYAILEIDD- 148 (155)
T ss_pred CEEEEEECCcccccccchhh-hhhhhhcCCCEEEECcccCCccEEECCEEEEeCCCccCcC---C-CCCCeEEEEEecC-
Confidence 99999999988655433332 3455667899999999999999888999999999999752 2 5688999999998
Q ss_pred eEEEEE
Q 029673 160 RVVVYV 165 (190)
Q Consensus 160 ~~~~~~ 165 (190)
++++++
T Consensus 149 ~~~~~~ 154 (155)
T cd00841 149 KGEVEI 154 (155)
T ss_pred CCcEEE
Confidence 666654
No 7
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.95 E-value=4.4e-27 Score=174.25 Aligned_cols=147 Identities=27% Similarity=0.395 Sum_probs=111.8
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-HHHHHHHhhhCCcEEEecCCccccc--------CCCC
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-KEVHDYLKIICPDLHIIRGEYDEET--------RYPE 72 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~--------~~p~ 72 (190)
|||+++||+|++.. .+ +++.+.+ .++|.|+++||+++ .++++.++++ ++++|+||||... .++.
T Consensus 1 Mki~~~sD~H~~~~--~~-~~~~~~~--~~~d~vi~~GDi~~~~~~~~~~~~~--~~~~v~GNHD~~~~~~~~~~~~~~~ 73 (156)
T PF12850_consen 1 MKIAVISDLHGNLD--AL-EAVLEYI--NEPDFVIILGDIFDPEEVLELLRDI--PVYVVRGNHDNWAFPNENDEEYLLD 73 (156)
T ss_dssp EEEEEEE--TTTHH--HH-HHHHHHH--TTESEEEEES-SCSHHHHHHHHHHH--EEEEE--CCHSTHHHSEECTCSSHS
T ss_pred CEEEEEeCCCCChh--HH-HHHHHHh--cCCCEEEECCCchhHHHHHHHHhcC--CEEEEeCCcccccchhhhhcccccc
Confidence 99999999998532 22 2334434 46999999999999 5667888877 8999999999853 1334
Q ss_pred ceEEEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEE
Q 029673 73 TKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFV 152 (190)
Q Consensus 73 ~~~~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ 152 (190)
....+.++.+++++||++..+....+.+...+...+++++++||+|.+...+.+++.++||||++.+. ...+++|+
T Consensus 74 ~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~~~~~~~~~Gs~~~~~----~~~~~~~~ 149 (156)
T PF12850_consen 74 ALRLTIDGFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTHRPQVFKIGGIHVINPGSIGGPR----HGDQSGYA 149 (156)
T ss_dssp EEEEEETTEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSSSEEEEEETTEEEEEE-GSSS-S----SSSSEEEE
T ss_pred ceeeeecCCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcccceEEEECCEEEEECCcCCCCC----CCCCCEEE
Confidence 45678899999999999987766666666677788999999999999999999999999999999752 22389999
Q ss_pred EEEEeCC
Q 029673 153 LMDIDGL 159 (190)
Q Consensus 153 ll~~~~~ 159 (190)
+++++++
T Consensus 150 i~~~~~~ 156 (156)
T PF12850_consen 150 ILDIEDK 156 (156)
T ss_dssp EEEETTT
T ss_pred EEEEecC
Confidence 9999864
No 8
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.89 E-value=7.4e-22 Score=154.94 Aligned_cols=147 Identities=19% Similarity=0.158 Sum_probs=106.4
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCH--------HHHHHHhhhCCcEEEecCCccccc-----
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIK--------EVHDYLKIICPDLHIIRGEYDEET----- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~--------~~~~~l~~l~~~~~~v~GNHD~~~----- 68 (190)
|||+++||+|++. ...+++.+.++++++|.|+++||+++. +.++.|++++.|+++|+||||...
T Consensus 5 ~kIl~iSDiHgn~---~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~~v~~~l~ 81 (224)
T cd07388 5 RYVLATSNPKGDL---EALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDAPLWEYLR 81 (224)
T ss_pred eEEEEEEecCCCH---HHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCChHHHHHHH
Confidence 8999999999742 223445555556799999999999882 233455556679999999999741
Q ss_pred -CC------CC--------------------------------ceEE----------------EECCEEEEEeecCccCC
Q 029673 69 -RY------PE--------------------------------TKTL----------------TIGQFKLGLCHGHQVIP 93 (190)
Q Consensus 69 -~~------p~--------------------------------~~~~----------------~~~~~~i~~~Hg~~~~~ 93 (190)
.+ |. ..+. ...+..|+++|.+|+..
T Consensus 82 ~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~ 161 (224)
T cd07388 82 EAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHK 161 (224)
T ss_pred HHhcccccCccceecCCCeEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCC
Confidence 10 10 0000 01235689999999764
Q ss_pred ---CCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCCeEE
Q 029673 94 ---WGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVV 162 (190)
Q Consensus 94 ---~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~~~~ 162 (190)
..++..+.+++++.++.+++|||+| ....+.+++.++|||++.. ..|+++++++.+++
T Consensus 162 g~~h~GS~alr~~I~~~~P~l~i~GHih-~~~~~~g~t~vvNpg~~~~----------g~~a~i~~~~~~v~ 222 (224)
T cd07388 162 GLNEQGSHEVAHLIKTHNPLVVLVGGKG-QKHELLGASWVVVPGDLSE----------GRYALLDLRARKLE 222 (224)
T ss_pred CCCccCHHHHHHHHHHhCCCEEEEcCCc-eeEEEeCCEEEECCCcccC----------CcEEEEEecCccee
Confidence 3467888889999999999999999 4445789999999999663 58999999865543
No 9
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.88 E-value=3.7e-21 Score=153.11 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=105.5
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhh--cCCCccEEEEcCCCCC------------HHHHHHHhhh---CCcEEEecCCc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSML--VPGKIQHIVCTGNLCI------------KEVHDYLKII---CPDLHIIRGEY 64 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~--~~~~~D~vi~~GDl~~------------~~~~~~l~~l---~~~~~~v~GNH 64 (190)
||++++||+|++.......+.+.+.+ .+.++|.|+++||+++ .++.+.|+++ +.++++++|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 79999999998654434444555555 3468999999999996 1334444544 36899999999
Q ss_pred cccc-----------CCCCceEEEECCEEEEEeecCccCCC---------------------------------------
Q 029673 65 DEET-----------RYPETKTLTIGQFKLGLCHGHQVIPW--------------------------------------- 94 (190)
Q Consensus 65 D~~~-----------~~p~~~~~~~~~~~i~~~Hg~~~~~~--------------------------------------- 94 (190)
|... -+|....++++|.+++++||+.+...
T Consensus 81 D~~~~~~~~~~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~~p~~~~~~ia~~~~~~s 160 (241)
T PRK05340 81 DFLLGKRFAKAAGMTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRNPWLQWLFLALPLSIRLRIAAKMRAKS 160 (241)
T ss_pred chhhhHHHHHhCCCEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9763 14556677889999999999864100
Q ss_pred -------------CCHHHHHHHhhcCCccEEEECcccCcceEEec-C---eEEEccCCCcCCCCCCCCCCCCcEEEEEEe
Q 029673 95 -------------GDLDSLAMLQRQLDVDILVTGHTHQFTAYKHE-G---GVVINPGSATGAFSSITYDVNPSFVLMDID 157 (190)
Q Consensus 95 -------------~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~-~---~~~inpGs~~~~~~~~~~~~~~~y~ll~~~ 157 (190)
..++.+.+.++..+++++++||+|++...... + ..++|.|++.. ..+| ++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~~lgdw~~---------~~~~--~~~~ 229 (241)
T PRK05340 161 KAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRIVLGDWHE---------QGSV--LKVD 229 (241)
T ss_pred HHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEEEeCCCCC---------CCeE--EEEE
Confidence 01123445556779999999999999765542 2 26899999863 2566 4555
Q ss_pred CCeEEEE
Q 029673 158 GLRVVVY 164 (190)
Q Consensus 158 ~~~~~~~ 164 (190)
+++++..
T Consensus 230 ~~~~~~~ 236 (241)
T PRK05340 230 ADGVELI 236 (241)
T ss_pred CCceEEE
Confidence 7765543
No 10
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.87 E-value=1.5e-21 Score=142.21 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=87.1
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCH-------HHHHHHhhhCCc-EEEecCCcccccCCCCce
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIK-------EVHDYLKIICPD-LHIIRGEYDEETRYPETK 74 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-------~~~~~l~~l~~~-~~~v~GNHD~~~~~p~~~ 74 (190)
||+++||+|+... .++..++|.|+++||+++. +..++++++..+ +++|+||||....
T Consensus 1 ~i~~isD~H~~~~----------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~~~~----- 65 (135)
T cd07379 1 RFVCISDTHSRHR----------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAGNHDLTLD----- 65 (135)
T ss_pred CEEEEeCCCCCCC----------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCCCCeEEEEECCCCCcCC-----
Confidence 6899999998422 2345789999999999872 355667766544 5789999998643
Q ss_pred EEEECCEEEEEeecCccCCC--------CCHHHHHHHhhcCCccEEEECcccCcc-eE----EecCeEEEccC
Q 029673 75 TLTIGQFKLGLCHGHQVIPW--------GDLDSLAMLQRQLDVDILVTGHTHQFT-AY----KHEGGVVINPG 134 (190)
Q Consensus 75 ~~~~~~~~i~~~Hg~~~~~~--------~~~~~l~~~~~~~~~~~~i~GH~H~~~-~~----~~~~~~~inpG 134 (190)
.++.+|+++|++++... .+.+.+.+.+++.+++++++||+|.+. .. +.+++.++||+
T Consensus 66 ---~~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~t~~in~~ 135 (135)
T cd07379 66 ---PEDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAERVLDTDGETLFVNAS 135 (135)
T ss_pred ---CCCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcCceeEecccCCCEEEEeCC
Confidence 46789999999986532 234556677777889999999999997 44 56899999985
No 11
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.86 E-value=3.4e-21 Score=148.38 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=112.1
Q ss_pred CeEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCC--C---H----HH--HHHHhhhCCcEEEecCCccccc-
Q 029673 1 MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLC--I---K----EV--HDYLKIICPDLHIIRGEYDEET- 68 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~--~---~----~~--~~~l~~l~~~~~~v~GNHD~~~- 68 (190)
|||++++||+|++. ...+++..+....++|.++++||++ + + +. ++.++....|+++|+||.|...
T Consensus 3 ~mkil~vtDlHg~~---~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD~~~v 79 (226)
T COG2129 3 KMKILAVTDLHGSE---DSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCDPPEV 79 (226)
T ss_pred cceEEEEeccccch---HHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCChHHH
Confidence 59999999999843 2235566666667999999999999 4 1 11 3455556689999999999984
Q ss_pred --------------------------------------CCCCc--------eEEEE-CCEEEEEeecCccCCC-------
Q 029673 69 --------------------------------------RYPET--------KTLTI-GQFKLGLCHGHQVIPW------- 94 (190)
Q Consensus 69 --------------------------------------~~p~~--------~~~~~-~~~~i~~~Hg~~~~~~------- 94 (190)
++++. .+... +..+|+++|.+|++..
T Consensus 80 ~~~l~~~~~~v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~HaPP~gt~~d~~~g~ 159 (226)
T COG2129 80 IDVLKNAGVNVHGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNPVNILLTHAPPYGTLLDTPSGY 159 (226)
T ss_pred HHHHHhcccccccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccCcceEEEecCCCCCccccCCCCc
Confidence 01110 01111 2234999999987421
Q ss_pred --CCHHHHHHHhhcCCccEEEECcccCc-ceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCCeEEEEEE
Q 029673 95 --GDLDSLAMLQRQLDVDILVTGHTHQF-TAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVY 166 (190)
Q Consensus 95 --~~~~~l~~~~~~~~~~~~i~GH~H~~-~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~~~~~~~~ 166 (190)
-+...++++.++.++.+.+|||.|.. .....+++.++|||+++. +.||+++++...++.+..
T Consensus 160 ~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~TivVNPG~~~~----------g~yA~i~l~~~~Vk~~~~ 224 (226)
T COG2129 160 VHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGNTIVVNPGPLGE----------GRYALIELEKEVVKLEQF 224 (226)
T ss_pred cccchHHHHHHHHHhCCceEEEeeecccccccccCCeEEECCCCccC----------ceEEEEEecCcEEEEEEe
Confidence 24567888889999999999999985 456778999999999774 799999999997665543
No 12
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.86 E-value=6.2e-21 Score=140.04 Aligned_cols=116 Identities=24% Similarity=0.328 Sum_probs=88.2
Q ss_pred EEEEecCCCCCCCCChHH-------HHHhhhcCCCccEEEEcCCCCCH-------HHHHHHhhhCC---cEEEecCCccc
Q 029673 4 VLALGDLHIPHRAADLPA-------KFKSMLVPGKIQHIVCTGNLCIK-------EVHDYLKIICP---DLHIIRGEYDE 66 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~-------~l~~~~~~~~~D~vi~~GDl~~~-------~~~~~l~~l~~---~~~~v~GNHD~ 66 (190)
|+++||+|++........ ++.+.+++.++|+|+++||+++. ...+.++++.. |+++++||||.
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNHD~ 80 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHDV 80 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCCeE
Confidence 689999998654322211 13444567899999999999982 23455666654 89999999998
Q ss_pred ccCCCCceEEEECCEEEEEeecCccCCCCC-------HHHHHHHhhcCCccEEEECcccCcceEE----ecCeEEEccCC
Q 029673 67 ETRYPETKTLTIGQFKLGLCHGHQVIPWGD-------LDSLAMLQRQLDVDILVTGHTHQFTAYK----HEGGVVINPGS 135 (190)
Q Consensus 67 ~~~~p~~~~~~~~~~~i~~~Hg~~~~~~~~-------~~~l~~~~~~~~~~~~i~GH~H~~~~~~----~~~~~~inpGs 135 (190)
|+++|+++..+... .+.+.+++++.++++++|||+|.+.... .+++.++|+||
T Consensus 81 ----------------iv~~Hhp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~~~~~~~~~~~~aGs 144 (144)
T cd07400 81 ----------------IVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVLHGHKHVPYVGNISNAGGGLVVIGAGT 144 (144)
T ss_pred ----------------EEEecCCCCCCCccccccCCCHHHHHHHHHHcCCCEEEECCCCCcCeeeccCCCCCEEEEecCC
Confidence 99999988754322 2346677788899999999999998877 67889999997
No 13
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.84 E-value=8.8e-20 Score=147.83 Aligned_cols=172 Identities=19% Similarity=0.270 Sum_probs=113.3
Q ss_pred eEEEEEecCCCCCCCC------ChHHHHHhh---hc--CCCccEEEEcCCCCC---H----HHHHHHhhhCCcEEEecCC
Q 029673 2 VLVLALGDLHIPHRAA------DLPAKFKSM---LV--PGKIQHIVCTGNLCI---K----EVHDYLKIICPDLHIIRGE 63 (190)
Q Consensus 2 mri~~iSD~H~~~~~~------~~~~~l~~~---~~--~~~~D~vi~~GDl~~---~----~~~~~l~~l~~~~~~v~GN 63 (190)
|||+++||+|+..... +..+.+.++ ++ +.++|+||++||+++ . ...+.|+++..|+++++||
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv~~v~GN 94 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPCVWLPGN 94 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcEEEeCCC
Confidence 8999999999732110 112223332 22 247999999999998 2 2344566677899999999
Q ss_pred ccccc---------CCCC-c--------eEE---------------------------E-ECCEEEEEeecCccCC---C
Q 029673 64 YDEET---------RYPE-T--------KTL---------------------------T-IGQFKLGLCHGHQVIP---W 94 (190)
Q Consensus 64 HD~~~---------~~p~-~--------~~~---------------------------~-~~~~~i~~~Hg~~~~~---~ 94 (190)
||... .++. . ..+ + .+...++++|++|... +
T Consensus 95 HD~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~~~~~vv~~hH~P~~~~~~~ 174 (275)
T PRK11148 95 HDFQPAMYSALQDAGISPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAPERHTLVLLHHHPLPAGCAW 174 (275)
T ss_pred CCChHHHHHHHhhcCCCccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCCCCCeEEEEcCCCCCCCcch
Confidence 99742 1110 0 000 0 0123577788776421 1
Q ss_pred ------CCHHHHHHHhhcC-CccEEEECcccCcceEEecCeEEEccCCCcCCCCCCC-----CCCCCcEEEEEEe-CCeE
Q 029673 95 ------GDLDSLAMLQRQL-DVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSIT-----YDVNPSFVLMDID-GLRV 161 (190)
Q Consensus 95 ------~~~~~l~~~~~~~-~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~-----~~~~~~y~ll~~~-~~~~ 161 (190)
.+.+.+.++++++ +++++++||+|.......+|+.++.++|.+..+.+.. ....++|.++++. ++.+
T Consensus 175 ~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~~~g~~ 254 (275)
T PRK11148 175 LDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELHADGSL 254 (275)
T ss_pred hhccCCCCHHHHHHHHhcCCCceEEEecccChHHhceECCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEcCCCcE
Confidence 1345677777775 8999999999999888889998887777775432211 2355799999996 4568
Q ss_pred EEEEEEeeCCeE
Q 029673 162 VVYVYELIDGEV 173 (190)
Q Consensus 162 ~~~~~~i~~~~~ 173 (190)
..++..+...++
T Consensus 255 ~~~~~~~~~~~~ 266 (275)
T PRK11148 255 ETEVHRLADTEF 266 (275)
T ss_pred EEEEEEcCCCCc
Confidence 888888877554
No 14
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.84 E-value=1.2e-19 Score=143.60 Aligned_cols=135 Identities=22% Similarity=0.279 Sum_probs=94.9
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcC--CCccEEEEcCCCCC------------HHHHHHHhhh---CCcEEEecCCccc
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVP--GKIQHIVCTGNLCI------------KEVHDYLKII---CPDLHIIRGEYDE 66 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~--~~~D~vi~~GDl~~------------~~~~~~l~~l---~~~~~~v~GNHD~ 66 (190)
++++||+|++.......+.+.+.+.+ .+||.|+++||+++ .++.+.|+++ +.++++|+||||.
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~ 80 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDF 80 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 37999999865433344455555532 37999999999997 1223334443 4689999999997
Q ss_pred ccC-----------CCCceEEEECCEEEEEeecCccCCC-----------------------------------------
Q 029673 67 ETR-----------YPETKTLTIGQFKLGLCHGHQVIPW----------------------------------------- 94 (190)
Q Consensus 67 ~~~-----------~p~~~~~~~~~~~i~~~Hg~~~~~~----------------------------------------- 94 (190)
... ++....++++|.+++++||+.+...
T Consensus 81 ~~~~~~~~~~gi~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~l~~~~r~~l~~~~~~~s~~ 160 (231)
T TIGR01854 81 LIGKRFAREAGMTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFLHLPLAVRVKLARKIRAESRA 160 (231)
T ss_pred hhhHHHHHHCCCEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 641 3555667889999999999764210
Q ss_pred ----C-------CHHHHHHHhhcCCccEEEECcccCcceEEec----CeEEEccCCCcC
Q 029673 95 ----G-------DLDSLAMLQRQLDVDILVTGHTHQFTAYKHE----GGVVINPGSATG 138 (190)
Q Consensus 95 ----~-------~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~----~~~~inpGs~~~ 138 (190)
. .+..+.+.++..++++++|||+|++.....+ +..++|.|++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~~ 219 (231)
T TIGR01854 161 DKQMKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWYR 219 (231)
T ss_pred hcCCCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCcc
Confidence 0 0123344556679999999999999877655 678999999864
No 15
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.83 E-value=6e-20 Score=142.74 Aligned_cols=148 Identities=22% Similarity=0.238 Sum_probs=109.2
Q ss_pred EEEecCCCCCCCCChHHHHHhhhcCCC--ccEEEEcCCCCC------------HHHHHHHhh---hCCcEEEecCCcccc
Q 029673 5 LALGDLHIPHRAADLPAKFKSMLVPGK--IQHIVCTGNLCI------------KEVHDYLKI---ICPDLHIIRGEYDEE 67 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~~~--~D~vi~~GDl~~------------~~~~~~l~~---l~~~~~~v~GNHD~~ 67 (190)
++|||+|++...+...+.|.+.++... .|.++++||+++ .++.+.|.+ -+.++|+++||||..
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 479999997555566666777775444 599999999998 234444443 357999999999976
Q ss_pred c------------CCCCceEEEECCEEEEEeecCccCCC------------------------------------C----
Q 029673 68 T------------RYPETKTLTIGQFKLGLCHGHQVIPW------------------------------------G---- 95 (190)
Q Consensus 68 ~------------~~p~~~~~~~~~~~i~~~Hg~~~~~~------------------------------------~---- 95 (190)
. -+|....++..|.+++++||..+.+. .
T Consensus 81 l~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~~~~~lflnl~l~~R~ri~~k~r~~s~~ 160 (237)
T COG2908 81 LGKRFAQEAGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWAWLQLLFLNLPLRVRRRIAYKIRSLSSW 160 (237)
T ss_pred HHHHHHhhcCceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccHHHHHHHHHhHHHHHHHHHHHHHHhhHH
Confidence 4 25777888999999999999874210 0
Q ss_pred --------------CHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCCeE
Q 029673 96 --------------DLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRV 161 (190)
Q Consensus 96 --------------~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~~~ 161 (190)
.++...+.++..+++.+||||+|++....+++..|+|.|++.. .=++++++++..
T Consensus 161 ~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi~lGdW~~-----------~~s~~~v~~~~~ 229 (237)
T COG2908 161 AKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINLGDWVS-----------EGSILEVDDGGL 229 (237)
T ss_pred hHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEEecCcchh-----------cceEEEEecCcE
Confidence 0111234456779999999999999999999999999999883 334677777765
Q ss_pred EE
Q 029673 162 VV 163 (190)
Q Consensus 162 ~~ 163 (190)
+.
T Consensus 230 ~~ 231 (237)
T COG2908 230 EL 231 (237)
T ss_pred EE
Confidence 43
No 16
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.83 E-value=1.7e-19 Score=142.82 Aligned_cols=156 Identities=15% Similarity=0.227 Sum_probs=104.6
Q ss_pred EEEEEecCCCCCCC------CChHH---HHHhhhcCC--CccEEEEcCCCCC---H----HHHHHHhhhCCcEEEecCCc
Q 029673 3 LVLALGDLHIPHRA------ADLPA---KFKSMLVPG--KIQHIVCTGNLCI---K----EVHDYLKIICPDLHIIRGEY 64 (190)
Q Consensus 3 ri~~iSD~H~~~~~------~~~~~---~l~~~~~~~--~~D~vi~~GDl~~---~----~~~~~l~~l~~~~~~v~GNH 64 (190)
||+++||+|.+... ....+ ++.+.+++. ++|+|+++||+++ . .+.+.++++..|+++|+|||
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNH 80 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNH 80 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 79999999986432 12222 333334454 8999999999998 2 34455666778999999999
Q ss_pred ccccC----C--------CCceEEEE------------------------------------CCEEEEEeecCccCCC--
Q 029673 65 DEETR----Y--------PETKTLTI------------------------------------GQFKLGLCHGHQVIPW-- 94 (190)
Q Consensus 65 D~~~~----~--------p~~~~~~~------------------------------------~~~~i~~~Hg~~~~~~-- 94 (190)
|.... + +....++. +...|+++|.++....
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~il~~H~pp~~~~~~ 160 (240)
T cd07402 81 DDRAAMRAVFPELPPAPGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAPDKPTLVFLHHPPFPVGIA 160 (240)
T ss_pred CCHHHHHHhhccccccccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCCCCCEEEEECCCCccCCch
Confidence 97420 0 00111111 2356888887765321
Q ss_pred -------CCHHHHHHHhhcC-CccEEEECcccCcceEEecCeEEEccCCCcCCCCCCC-----CCCCCcEEEEEEeC
Q 029673 95 -------GDLDSLAMLQRQL-DVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSIT-----YDVNPSFVLMDIDG 158 (190)
Q Consensus 95 -------~~~~~l~~~~~~~-~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~-----~~~~~~y~ll~~~~ 158 (190)
...+.+.++++++ +++++++||+|.......+++.+++.||++.++.+.. ....++|....+-+
T Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (240)
T cd07402 161 WMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLHE 237 (240)
T ss_pred hhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEECCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEec
Confidence 1234566677777 8999999999999888899999999999998763321 23455777776643
No 17
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.82 E-value=6.3e-19 Score=149.06 Aligned_cols=181 Identities=18% Similarity=0.200 Sum_probs=114.9
Q ss_pred CeEEEEEecCCCCCCCCC------hHHHHHh---hhcCCCccEEEEcCCCCC-----H----HHHHHHhh----------
Q 029673 1 MVLVLALGDLHIPHRAAD------LPAKFKS---MLVPGKIQHIVCTGNLCI-----K----EVHDYLKI---------- 52 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~~------~~~~l~~---~~~~~~~D~vi~~GDl~~-----~----~~~~~l~~---------- 52 (190)
||||+++||+|++..... ..+.|.+ ++.++++|+|+++||+++ . .+.+.|++
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~~ 82 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCEL 82 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccch
Confidence 699999999998643211 1223333 345789999999999999 1 22334443
Q ss_pred --------------------------hCCcEEEecCCcccccCC----C-----------------C-------ceEE--
Q 029673 53 --------------------------ICPDLHIIRGEYDEETRY----P-----------------E-------TKTL-- 76 (190)
Q Consensus 53 --------------------------l~~~~~~v~GNHD~~~~~----p-----------------~-------~~~~-- 76 (190)
.+.|++++.||||...+. + . ...+
T Consensus 83 ~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~~~~~~~l~lL~~~Glvnifgk~~~~~~i~~~Pvll~k 162 (405)
T TIGR00583 83 EFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGLLCALDLLHATGLVNYFGKVPEIDNIIVSPILLQK 162 (405)
T ss_pred hhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccccccccHHHHHHhCCCEEEeccccccccceeeeEEEec
Confidence 246999999999998510 0 0 0000
Q ss_pred --------------------------------E---ECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcc
Q 029673 77 --------------------------------T---IGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFT 121 (190)
Q Consensus 77 --------------------------------~---~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~ 121 (190)
. .+-++|+++|+....-......-..++ ..++||++.||.|.+.
T Consensus 163 g~~~valyGl~~~~d~rl~~~f~~~~v~~~~p~~~~~~~fnIlv~Hq~~~~~~~~~~ipe~ll-p~~fDYValGHiH~~~ 241 (405)
T TIGR00583 163 GETKLALYGISNVRDERLVRTFKDNKVSFLRPNAGAEDWFNLLVLHQNHAAHTSTSFLPESFI-PDFFDLVIWGHEHECL 241 (405)
T ss_pred CCeeEEEecCCCCCHHHHHHHhhccchhhhccccCCCCceEEEEeCceecCCCCcccCchhhh-hccCcEEEeccccccc
Confidence 0 122467788865421110000001222 3479999999999975
Q ss_pred eEE----ecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCCeEEEEEEEee-CCeEEEEEEEEee
Q 029673 122 AYK----HEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELI-DGEVKVDKIDFKK 182 (190)
Q Consensus 122 ~~~----~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~~~~~~~~~i~-~~~~~~~~~~~~~ 182 (190)
... .++..+++|||.........+..+.+|.+++++++.++++++++. -.++...++.+..
T Consensus 242 ~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~l~~ 307 (405)
T TIGR00583 242 PDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEILLDK 307 (405)
T ss_pred ccccccCCCCceEEECCCcccccccccccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEEhhh
Confidence 432 235578899996642111123467899999999999999999997 5778888887654
No 18
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.81 E-value=2.3e-19 Score=136.69 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=89.2
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC---H---HHHHHHhhhCCcEEEecCCcccccCC-------
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI---K---EVHDYLKIICPDLHIIRGEYDEETRY------- 70 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~---~---~~~~~l~~l~~~~~~v~GNHD~~~~~------- 70 (190)
|+++||+|++.. .+ +. ..+++.++|.|+++||+++ . +.++.|+++..|+++|+||||.....
T Consensus 1 i~~~sD~H~~~~--~~-~~--~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~~~~~~~~~~~~ 75 (188)
T cd07392 1 ILAISDIHGDVE--KL-EA--IILKAEEADAVIVAGDITNFGGKEAAVEINLLLAIGVPVLAVPGNCDTPEILGLLTSAG 75 (188)
T ss_pred CEEEEecCCCHH--HH-HH--HHhhccCCCEEEECCCccCcCCHHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHhhhcCc
Confidence 689999998431 11 11 3345678999999999998 2 22356666677899999999976310
Q ss_pred ------------------------CC--c-------------eEEEECCEEEEEeecCccCCC---------CCHHHHHH
Q 029673 71 ------------------------PE--T-------------KTLTIGQFKLGLCHGHQVIPW---------GDLDSLAM 102 (190)
Q Consensus 71 ------------------------p~--~-------------~~~~~~~~~i~~~Hg~~~~~~---------~~~~~l~~ 102 (190)
|. . ......+..|+++|.+|..++ .+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~ 155 (188)
T cd07392 76 LNLHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSDGRLNNLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRK 155 (188)
T ss_pred EecCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHhhhhhccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHH
Confidence 00 0 001123467899999886421 24566778
Q ss_pred HhhcCCccEEEECcccCcc-eEEecCeEEEccC
Q 029673 103 LQRQLDVDILVTGHTHQFT-AYKHEGGVVINPG 134 (190)
Q Consensus 103 ~~~~~~~~~~i~GH~H~~~-~~~~~~~~~inpG 134 (190)
++++.++++++|||+|.+. ..+.+++.++|||
T Consensus 156 li~~~~~~~~l~GH~H~~~~~~~~~~~~~~n~G 188 (188)
T cd07392 156 FIEERQPLLCICGHIHESRGVDKIGNTLVVNPG 188 (188)
T ss_pred HHHHhCCcEEEEeccccccceeeeCCeEEecCC
Confidence 8888899999999999986 4478999999998
No 19
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.80 E-value=6.5e-19 Score=137.52 Aligned_cols=132 Identities=23% Similarity=0.276 Sum_probs=92.0
Q ss_pred EEEecCCCCCCCCChHHHHHhhhcC---CCccEEEEcCCCCCH-------------HH-HHHHh--hhCCcEEEecCCcc
Q 029673 5 LALGDLHIPHRAADLPAKFKSMLVP---GKIQHIVCTGNLCIK-------------EV-HDYLK--IICPDLHIIRGEYD 65 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~---~~~D~vi~~GDl~~~-------------~~-~~~l~--~l~~~~~~v~GNHD 65 (190)
++|||+|++.........+...+.. .++|.|+++||+++. +. ...++ +.+.++++++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 4899999876554443333333322 599999999999971 11 12222 22468999999999
Q ss_pred cccC-----------CCCce-EEEECCEEEEEeecCccCCCC------------------------------------C-
Q 029673 66 EETR-----------YPETK-TLTIGQFKLGLCHGHQVIPWG------------------------------------D- 96 (190)
Q Consensus 66 ~~~~-----------~p~~~-~~~~~~~~i~~~Hg~~~~~~~------------------------------------~- 96 (190)
.... .+... .++.++.+++++||+.+.+.. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~HG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (217)
T cd07398 81 FLLGDFFAEELGLILLPDPLVHLELDGKRILLEHGDQFDTDDRAYQLLRRLGRNPYDQLLFLNRPLNRRRGIAGGLRWSS 160 (217)
T ss_pred HHHHhHHHHHcCCEEeccceEEEeeCCeEEEEECCCcCchhHHHHHHHHHHhCcHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 9853 22233 678899999999998853210 0
Q ss_pred -----------------HHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCC
Q 029673 97 -----------------LDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSA 136 (190)
Q Consensus 97 -----------------~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~ 136 (190)
++.+...++..+++++++||+|.+.....+++.++|+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~n~G~W 217 (217)
T cd07398 161 RYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHELDGKLYINLGDW 217 (217)
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEEECCEEEEECCCC
Confidence 0011233456799999999999999988899999999985
No 20
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.79 E-value=2.9e-18 Score=137.84 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=109.0
Q ss_pred eEEEEEecCCCCCCCCC-------------hHHHHHhhhcCC--CccEEEEcCCCCCH------------HHHHHHhhh-
Q 029673 2 VLVLALGDLHIPHRAAD-------------LPAKFKSMLVPG--KIQHIVCTGNLCIK------------EVHDYLKII- 53 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~-------------~~~~l~~~~~~~--~~D~vi~~GDl~~~------------~~~~~l~~l- 53 (190)
.+++++||+|.+..... +.+.+.+.+++. ++|+|+++||+++. +..+.++++
T Consensus 5 ~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (262)
T cd07395 5 FYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLD 84 (262)
T ss_pred EEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhcc
Confidence 48999999998632111 123333444444 99999999999981 122334444
Q ss_pred -CCcEEEecCCccccc------------CC-CCceEEE-----------------------------------------E
Q 029673 54 -CPDLHIIRGEYDEET------------RY-PETKTLT-----------------------------------------I 78 (190)
Q Consensus 54 -~~~~~~v~GNHD~~~------------~~-p~~~~~~-----------------------------------------~ 78 (190)
..|+++++||||... .+ +....+. -
T Consensus 85 ~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~ 164 (262)
T cd07395 85 PDIPLVCVCGNHDVGNTPTEESIKDYRDVFGDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESD 164 (262)
T ss_pred CCCcEEEeCCCCCCCCCCChhHHHHHHHHhCCcceEEEECCEEEEEeccccccCccccccchHHHHHHHHHHHHHHHhcc
Confidence 468999999999741 00 0000011 1
Q ss_pred CCEEEEEeecCccCCCC------------CHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCC
Q 029673 79 GQFKLGLCHGHQVIPWG------------DLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYD 146 (190)
Q Consensus 79 ~~~~i~~~Hg~~~~~~~------------~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~ 146 (190)
....|+++|.+++.... ....+..+++++++++++|||+|.......+++.++.+++.+..+ ..
T Consensus 165 ~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~~~g~~~~~~~~~~~~~----~~ 240 (262)
T cd07395 165 CKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGRYGGLEMVVTSAIGAQL----GN 240 (262)
T ss_pred CCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceEECCEEEEEcCceeccc----CC
Confidence 23567778876642110 123456677788999999999999988888899888888877642 34
Q ss_pred CCCcEEEEEEeCCeEEEEEEEe
Q 029673 147 VNPSFVLMDIDGLRVVVYVYEL 168 (190)
Q Consensus 147 ~~~~y~ll~~~~~~~~~~~~~i 168 (190)
..++|.++++++++++.+++.+
T Consensus 241 ~~~g~~~~~v~~~~~~~~~~~~ 262 (262)
T cd07395 241 DKSGLRIVKVTEDKIVHEYYSL 262 (262)
T ss_pred CCCCcEEEEECCCceeeeeeeC
Confidence 5799999999999888887753
No 21
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.78 E-value=3e-18 Score=124.01 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=80.6
Q ss_pred EEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCHHHHHHHhhh-CCcEEEecCCcccccCCCCceEEEECCEEE
Q 029673 5 LALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKII-CPDLHIIRGEYDEETRYPETKTLTIGQFKL 83 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l-~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i 83 (190)
+++||+|.. . ...+.+.. +..++|.++++||+.. +..+.+.++ ..++++|+|||| .+|
T Consensus 1 ~viSDtH~~-~--~~~~~~~~--~~~~~d~ii~~GD~~~-~~~~~~~~~~~~~~~~V~GN~D---------------~~I 59 (129)
T cd07403 1 LVISDTESP-A--LYSPEIKV--RLEGVDLILSAGDLPK-EYLEYLVTMLNVPVYYVHGNHD---------------VDI 59 (129)
T ss_pred CeeccccCc-c--ccchHHHh--hCCCCCEEEECCCCCh-HHHHHHHHHcCCCEEEEeCCCc---------------cCE
Confidence 589999953 2 22222222 2589999999999865 445666665 457999999999 679
Q ss_pred EEeecCccCCC-------CCHHHHHHHhhcCCccEEEECcccCcceEE-----ecCeEEEccC
Q 029673 84 GLCHGHQVIPW-------GDLDSLAMLQRQLDVDILVTGHTHQFTAYK-----HEGGVVINPG 134 (190)
Q Consensus 84 ~~~Hg~~~~~~-------~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~-----~~~~~~inpG 134 (190)
+++|++++.+. .+.+.+.+++++.+++++++||+|.+.... .+++.++|++
T Consensus 60 lv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~~~~~~~~~t~~~n~~ 122 (129)
T cd07403 60 LLTHAPPAGIGDGEDFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQLRIRRVGDTTVINAY 122 (129)
T ss_pred EEECCCCCcCcCcccccccCHHHHHHHHHHHCCcEEEEcCcCCCcCccccccccCCEEEEeCC
Confidence 99999886443 345566667777789999999999987655 6889999884
No 22
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.76 E-value=7.3e-18 Score=131.27 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=86.4
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhc-CCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEecCCccccc-------
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLV-PGKIQHIVCTGNLCI-----KEVHDYLKIICPDLHIIRGEYDEET------- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~~------- 68 (190)
+||+++||+|++.. .+ +++.+.+. ..++|.++++||+++ .++++.|++ .++++|+||||...
T Consensus 1 ~ri~~isDiHg~~~--~l-~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe~~~~~~~~~~ 75 (207)
T cd07424 1 GRDFVVGDIHGHYS--LL-QKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHEQMAIDALRAE 75 (207)
T ss_pred CCEEEEECCCCCHH--HH-HHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCChHHHHhHhhCC
Confidence 48999999998431 22 22333232 246999999999998 355666655 46899999999653
Q ss_pred --------------------------------CCCCceEEEECCEEEEEeecCccCC-CC--------CHH---------
Q 029673 69 --------------------------------RYPETKTLTIGQFKLGLCHGHQVIP-WG--------DLD--------- 98 (190)
Q Consensus 69 --------------------------------~~p~~~~~~~~~~~i~~~Hg~~~~~-~~--------~~~--------- 98 (190)
.+|....++.++.+++++|+.+... +. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~~~~~~~~~~~~~~~w~~ 155 (207)
T cd07424 76 PLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDGVGAVTLRPEDIEELLWSR 155 (207)
T ss_pred CcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhhhhccccCcccceeeeecc
Confidence 1222233445667899999854211 10 000
Q ss_pred -HHHHH-h-hcCCccEEEECcccCcceEEecCeEEEccCCCcC
Q 029673 99 -SLAML-Q-RQLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 138 (190)
Q Consensus 99 -~l~~~-~-~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~ 138 (190)
.+... . ...+.+++++||||.+.....++..+|||||+..
T Consensus 156 ~~~~~~~~~~~~~~~~iV~GHTh~~~~~~~~~~i~ID~Gsv~g 198 (207)
T cd07424 156 TRIQKAQTQPIKGVDAVVHGHTPVKRPLRLGNVLYIDTGAVFD 198 (207)
T ss_pred chhhhcCccccCCCCEEEECCCCCCcceEECCEEEEECCCCCC
Confidence 11110 1 1124589999999999988889999999999874
No 23
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.76 E-value=3.2e-18 Score=133.75 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=90.7
Q ss_pred EEEEEecCCCCCCCCCh------------HHHHHhhhcCCCccEEEEcCCCCC---------HHHHHHHhhh---CCcEE
Q 029673 3 LVLALGDLHIPHRAADL------------PAKFKSMLVPGKIQHIVCTGNLCI---------KEVHDYLKII---CPDLH 58 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~------------~~~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~l---~~~~~ 58 (190)
||+++||+|++...... .+.+.+.+.+.++|+|+++||+++ ..+.+.++++ ..|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 79999999986543211 123333345789999999999998 1334556666 56899
Q ss_pred EecCCcccccCCC-------------------C-c--------------------------e---------EEEECCEEE
Q 029673 59 IIRGEYDEETRYP-------------------E-T--------------------------K---------TLTIGQFKL 83 (190)
Q Consensus 59 ~v~GNHD~~~~~p-------------------~-~--------------------------~---------~~~~~~~~i 83 (190)
+++||||...... . . . ....+..+|
T Consensus 81 ~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 160 (223)
T cd00840 81 IIAGNHDSPSRLGALSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRSRLRDLLADAELRPRPLDPDDFNI 160 (223)
T ss_pred EecCCCCCccccccccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHHHHHHHHHHHHHHhhccCCCCcEE
Confidence 9999999985110 0 0 0 001134588
Q ss_pred EEeecCccCCCCCH----HHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcC
Q 029673 84 GLCHGHQVIPWGDL----DSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 138 (190)
Q Consensus 84 ~~~Hg~~~~~~~~~----~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~ 138 (190)
+++|++........ ......+...+++++++||+|.+......+..+++|||+..
T Consensus 161 l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~~~~~~~~~~~ypGS~~~ 219 (223)
T cd00840 161 LLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQIILGGGPPIVYPGSPEG 219 (223)
T ss_pred EEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCeeecCCCceEEeCCCccc
Confidence 99998754322111 11222334568999999999999887777899999999875
No 24
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.75 E-value=9.8e-18 Score=131.57 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=88.4
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhc-CCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEecCCccccc--------
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLV-PGKIQHIVCTGNLCI-----KEVHDYLKIICPDLHIIRGEYDEET-------- 68 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~~-------- 68 (190)
||+++||+|++.. .+.+.+.+ +. ..+.|.++++||+++ .++++.|++ ..+++|+||||...
T Consensus 16 ri~visDiHg~~~--~l~~~l~~-~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE~~~~~~~~~~~ 90 (218)
T PRK09968 16 HIWVVGDIHGEYQ--LLQSRLHQ-LSFCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHEAMALDAFETGD 90 (218)
T ss_pred eEEEEEeccCCHH--HHHHHHHh-cCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchHHHHHHHHhcCC
Confidence 8999999998532 23333333 33 457899999999999 466666665 35889999999731
Q ss_pred -------------------------------CCCCceEEEECCEEEEEeecCccCC-CC------------CHHHHHHHh
Q 029673 69 -------------------------------RYPETKTLTIGQFKLGLCHGHQVIP-WG------------DLDSLAMLQ 104 (190)
Q Consensus 69 -------------------------------~~p~~~~~~~~~~~i~~~Hg~~~~~-~~------------~~~~l~~~~ 104 (190)
++|....++.++.+++++|+..... .. ..+.+....
T Consensus 91 ~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~~ 170 (218)
T PRK09968 91 GNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDEYDFGKEIAESELLWPVDRVQKSL 170 (218)
T ss_pred hhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCchhhhccccchhhceeCcHHHhhCc
Confidence 2344444566788999999874211 00 011121111
Q ss_pred h-----cCCccEEEECcccCcceEEecCeEEEccCCCc
Q 029673 105 R-----QLDVDILVTGHTHQFTAYKHEGGVVINPGSAT 137 (190)
Q Consensus 105 ~-----~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~ 137 (190)
+ ..+.+++++||||.+.....++..+|||||+.
T Consensus 171 ~~~~~~~~~~~~vv~GHTh~~~~~~~~~~i~IDtGs~~ 208 (218)
T PRK09968 171 NGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPK 208 (218)
T ss_pred cccccccCCCCEEEECCCCcCcceeECCEEEEECCCCC
Confidence 1 23568999999999998888899999999955
No 25
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.74 E-value=2.5e-17 Score=126.99 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=96.0
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC--------H--------------------------HHH
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI--------K--------------------------EVH 47 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--------~--------------------------~~~ 47 (190)
-||+.+||.|+.. ++.+++.+.+.+.++|+|+++||+.. . ..+
T Consensus 6 ~kilA~s~~~g~~---e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff 82 (255)
T PF14582_consen 6 RKILAISNFRGDF---ELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFF 82 (255)
T ss_dssp -EEEEEE--TT-H---HHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHH---HHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHH
Confidence 4899999999832 45667777777789999999999975 1 234
Q ss_pred HHHhhhCCcEEEecCCcccccC------------CC-------------------------------CceEE--------
Q 029673 48 DYLKIICPDLHIIRGEYDEETR------------YP-------------------------------ETKTL-------- 76 (190)
Q Consensus 48 ~~l~~l~~~~~~v~GNHD~~~~------------~p-------------------------------~~~~~-------- 76 (190)
..|..++.|+++||||+|.+.. .| +...+
T Consensus 83 ~~L~~~~~p~~~vPG~~Dap~~~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~LrYP~weae 162 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMDAPERFFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGMGGEITDDQREEEFKLRYPAWEAE 162 (255)
T ss_dssp HHHHCC-SEEEEE--TTS-SHHHHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE-SEEESSS-BCSSS-EEEHHHHH
T ss_pred HHHHhcCCcEEEecCCCCchHHHHHHHHhccceeccceeeeeeeecccCCcEEEEecCccccCCCccccccccchHHHHH
Confidence 4556667899999999999630 01 00000
Q ss_pred -------EE-CCEEEEEeecCc-cC---CCCCHHHHHHHhhcCCccEEEECcccCcc-eEEecCeEEEccCCCcCCCCCC
Q 029673 77 -------TI-GQFKLGLCHGHQ-VI---PWGDLDSLAMLQRQLDVDILVTGHTHQFT-AYKHEGGVVINPGSATGAFSSI 143 (190)
Q Consensus 77 -------~~-~~~~i~~~Hg~~-~~---~~~~~~~l~~~~~~~~~~~~i~GH~H~~~-~~~~~~~~~inpGs~~~~~~~~ 143 (190)
++ .-.+|+++|.+| .. ...+++.+..+++.+++++++|||.|... ...++.+++|||||+..
T Consensus 163 y~lk~l~elk~~r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~~e~lG~TlVVNPGsL~~----- 237 (255)
T PF14582_consen 163 YSLKFLRELKDYRKILLFHTPPDLHKGLIHVGSAAVRDLIKTYNPDIVLCGHIHESHGKESLGKTLVVNPGSLAE----- 237 (255)
T ss_dssp HHHGGGGGCTSSEEEEEESS-BTBCTCTBTTSBHHHHHHHHHH--SEEEE-SSS-EE--EEETTEEEEE--BGGG-----
T ss_pred HHHHHHHhcccccEEEEEecCCccCCCcccccHHHHHHHHHhcCCcEEEecccccchhhHHhCCEEEecCccccc-----
Confidence 11 235899999888 32 12356788899999999999999999875 45779999999999995
Q ss_pred CCCCCCcEEEEEEeCCeEEE
Q 029673 144 TYDVNPSFVLMDIDGLRVVV 163 (190)
Q Consensus 144 ~~~~~~~y~ll~~~~~~~~~ 163 (190)
..|+++++.+.+++.
T Consensus 238 -----G~yAvI~l~~~~v~~ 252 (255)
T PF14582_consen 238 -----GDYAVIDLEQDKVEF 252 (255)
T ss_dssp -----TEEEEEETTTTEEEE
T ss_pred -----CceeEEEeccccccc
Confidence 699999999988764
No 26
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.73 E-value=2.8e-17 Score=127.14 Aligned_cols=137 Identities=20% Similarity=0.158 Sum_probs=90.4
Q ss_pred eEEEEEecCCCCCCCC---------ChHHHHHhhhcCCCccEEEEcCCCCC---H---------HHHHHHhhhCCcEEEe
Q 029673 2 VLVLALGDLHIPHRAA---------DLPAKFKSMLVPGKIQHIVCTGNLCI---K---------EVHDYLKIICPDLHII 60 (190)
Q Consensus 2 mri~~iSD~H~~~~~~---------~~~~~l~~~~~~~~~D~vi~~GDl~~---~---------~~~~~l~~l~~~~~~v 60 (190)
+||+++||+|...... ...+.+.+++++.+||+|+++||+++ . +.++.+.+...|++++
T Consensus 3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 82 (199)
T cd07383 3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAAT 82 (199)
T ss_pred eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEE
Confidence 7999999999865421 11234566667789999999999998 1 1122233335789999
Q ss_pred cCCcccccCCCCce---------EE----EECCEEEEEeecCccCC---CC------------------CHHHHHHHhhc
Q 029673 61 RGEYDEETRYPETK---------TL----TIGQFKLGLCHGHQVIP---WG------------------DLDSLAMLQRQ 106 (190)
Q Consensus 61 ~GNHD~~~~~p~~~---------~~----~~~~~~i~~~Hg~~~~~---~~------------------~~~~l~~~~~~ 106 (190)
+||||....+.... .. ......++++|.++... |. ...-+..+++.
T Consensus 83 ~GNHD~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~ 162 (199)
T cd07383 83 FGNHDGYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLER 162 (199)
T ss_pred CccCCCCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHc
Confidence 99999653332110 01 12246789999765321 11 11223445677
Q ss_pred CCccEEEECcccCcceEEecCeEEEccCCCcC
Q 029673 107 LDVDILVTGHTHQFTAYKHEGGVVINPGSATG 138 (190)
Q Consensus 107 ~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~ 138 (190)
.++++++|||+|........+...+|||+.+.
T Consensus 163 ~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g 194 (199)
T cd07383 163 GDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTG 194 (199)
T ss_pred CCeEEEEeCCCCCcceecccCCEEEeCCCCCC
Confidence 89999999999997665556667899999774
No 27
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.73 E-value=2.2e-16 Score=127.44 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=103.7
Q ss_pred eEEEEEecCCCCCCCC----------ChHHHHHhhhcCCCccEEEEcCCCCC---H---HH----HHHHhhhCCcEEEec
Q 029673 2 VLVLALGDLHIPHRAA----------DLPAKFKSMLVPGKIQHIVCTGNLCI---K---EV----HDYLKIICPDLHIIR 61 (190)
Q Consensus 2 mri~~iSD~H~~~~~~----------~~~~~l~~~~~~~~~D~vi~~GDl~~---~---~~----~~~l~~l~~~~~~v~ 61 (190)
.||+++||+|...... ...+++.+.+++.++|+|+++||+++ . +. .+.++++..|+++++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~ 80 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL 80 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence 4899999999643211 11123344445677999999999997 1 22 345566678999999
Q ss_pred CCcccccC----C--------C-CceEEEECC------------------------------------------------
Q 029673 62 GEYDEETR----Y--------P-ETKTLTIGQ------------------------------------------------ 80 (190)
Q Consensus 62 GNHD~~~~----~--------p-~~~~~~~~~------------------------------------------------ 80 (190)
||||.... + + ....++.++
T Consensus 81 GNHD~~~~~~~~~~~~~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l 160 (267)
T cd07396 81 GNHDLYNPSREYLLLYTLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGI 160 (267)
T ss_pred CccccccccHhhhhcccccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcC
Confidence 99998631 0 0 001111111
Q ss_pred --------------------EEEEEeecCccCCC-------CCHHHHHHHhhc-CCccEEEECcccCcceEEecCeEEEc
Q 029673 81 --------------------FKLGLCHGHQVIPW-------GDLDSLAMLQRQ-LDVDILVTGHTHQFTAYKHEGGVVIN 132 (190)
Q Consensus 81 --------------------~~i~~~Hg~~~~~~-------~~~~~l~~~~~~-~~~~~~i~GH~H~~~~~~~~~~~~in 132 (190)
..|+++|.++.... ...+.+.+++++ .+++++++||+|.......+|+.++.
T Consensus 161 ~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~~~gi~~~~ 240 (267)
T cd07396 161 GEEQLQWLRNELQEADANGEKVIIFSHFPLHPESTSPHGLLWNHEEVLSILRAYGCVKACISGHDHEGGYAQRHGIHFLT 240 (267)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCCCccccccCHHHHHHHHHhCCCEEEEEcCCcCCCCccccCCeeEEE
Confidence 23555565432111 123455566666 47899999999999988889999999
Q ss_pred cCCCcCCCCCCCCCCCCcEEEEEEeCCeEE
Q 029673 133 PGSATGAFSSITYDVNPSFVLMDIDGLRVV 162 (190)
Q Consensus 133 pGs~~~~~~~~~~~~~~~y~ll~~~~~~~~ 162 (190)
.||++.. +...+.|+++++.++++.
T Consensus 241 ~~a~~~~-----~~~~~~~~~~~~~~~~~~ 265 (267)
T cd07396 241 LEGMVET-----PPESNAFGVVIVYEDRLI 265 (267)
T ss_pred echhhcC-----CCCCCceEEEEEeCCcee
Confidence 9998862 567889999999888653
No 28
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.73 E-value=9.7e-17 Score=127.07 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=89.7
Q ss_pred EEEEecCCCCC--------CCC---ChHHHHHhhhcCC--CccEEEEcCCCCC-------HHHHHHHhhhCCcEEEecCC
Q 029673 4 VLALGDLHIPH--------RAA---DLPAKFKSMLVPG--KIQHIVCTGNLCI-------KEVHDYLKIICPDLHIIRGE 63 (190)
Q Consensus 4 i~~iSD~H~~~--------~~~---~~~~~l~~~~~~~--~~D~vi~~GDl~~-------~~~~~~l~~l~~~~~~v~GN 63 (190)
|.++||+|+.. ..+ ++.+.+.+.+++. ++|.|+++||+++ .+.++.|+++..++++|+||
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GN 80 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGN 80 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCC
Confidence 46899999863 111 2233344444333 8999999999996 13345666766679999999
Q ss_pred ccccc----C----CC---------------CceEEE----------------------------------------E--
Q 029673 64 YDEET----R----YP---------------ETKTLT----------------------------------------I-- 78 (190)
Q Consensus 64 HD~~~----~----~p---------------~~~~~~----------------------------------------~-- 78 (190)
||.+. . ++ ...++- .
T Consensus 81 HD~~~~~~~~~~~~l~~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~ 160 (232)
T cd07393 81 HDYWWGSASKLRKALEESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKK 160 (232)
T ss_pred ccccCCCHHHHHHHHHhcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99631 0 00 000000 0
Q ss_pred ---CCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcce-----EEecCeEEEccCCCcCC
Q 029673 79 ---GQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTA-----YKHEGGVVINPGSATGA 139 (190)
Q Consensus 79 ---~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~-----~~~~~~~~inpGs~~~~ 139 (190)
++.+|+++|++++....+.+.+...+++.+++++++||+|.+.. ...+|+.|.++.+.+..
T Consensus 161 ~~~~~~~i~~~H~p~~~~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~~ 229 (232)
T cd07393 161 REKEKIKIVMLHYPPANENGDDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGGIRYQLVSADYLN 229 (232)
T ss_pred CCCCCCEEEEECCCCcCCCCCHHHHHHHHHHcCCCEEEECCCCCCcccccccceECCEEEEEEcchhcC
Confidence 02379999998875545556666677778999999999998754 34788988888776543
No 29
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.72 E-value=1.6e-16 Score=132.41 Aligned_cols=167 Identities=17% Similarity=0.117 Sum_probs=99.5
Q ss_pred eEEEEEecCCCCCCCCC------h---HHHHHhhhcCCCccEEEEcCCCCCH------HH--------HHHHhhhCCcEE
Q 029673 2 VLVLALGDLHIPHRAAD------L---PAKFKSMLVPGKIQHIVCTGNLCIK------EV--------HDYLKIICPDLH 58 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~------~---~~~l~~~~~~~~~D~vi~~GDl~~~------~~--------~~~l~~l~~~~~ 58 (190)
|||+|+||+|++..... . .+++.+.+.++++|+|+++||++|. +. ++.|++.+.|++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 89999999998644221 1 1223333467899999999999981 11 223334457899
Q ss_pred EecCCcccccC--------------CC------CceEEEE-------------------------CCEEEEEeecCccCC
Q 029673 59 IIRGEYDEETR--------------YP------ETKTLTI-------------------------GQFKLGLCHGHQVIP 93 (190)
Q Consensus 59 ~v~GNHD~~~~--------------~p------~~~~~~~-------------------------~~~~i~~~Hg~~~~~ 93 (190)
+++||||.... .+ ....+.+ ...+|++.|....+.
T Consensus 81 ~I~GNHD~~~~~~~~~~~~~~ll~~~~~v~v~~~~~~v~i~g~~i~~lP~~~~~~~~~~~~~l~~~~~~ill~H~~v~g~ 160 (340)
T PHA02546 81 VLVGNHDMYYKNTIRPNAPTELLGQYDNITVIDEPTTVDFDGCSIDLIPWICKENTEEILEFIKNSKSEYCVGHWELNGF 160 (340)
T ss_pred EEccCCCcccccccccCchHHHHhhCCCEEEeCCceEEEECCEEEEECCCCCHHHHHHHHHHhccCCCcEEEEeeEEecC
Confidence 99999996420 01 0011111 233577777422110
Q ss_pred ---CC-CH-HHHH-HHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCC-CCCCcEEEEEEeCCeEEEEEE
Q 029673 94 ---WG-DL-DSLA-MLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITY-DVNPSFVLMDIDGLRVVVYVY 166 (190)
Q Consensus 94 ---~~-~~-~~l~-~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~-~~~~~y~ll~~~~~~~~~~~~ 166 (190)
.+ .. ..+. ... .++++++.||+|.+... + .+..|||+... .+++ +.+.+|.+++++.++ ++|+
T Consensus 161 ~~~~g~~~~~~~~~~~~--~~fdyvALGHiH~~~~~--~--~i~Y~GSp~~~--sf~E~~~~KG~~~vd~~~~~--~efi 230 (340)
T PHA02546 161 YFYKGMKSDHGLDPDFL--KKYKQVWSGHFHTISEK--G--NVTYIGTPYTL--TAGDENDPRGFWVFDTETHK--LEFI 230 (340)
T ss_pred cccCCCccccCCChhHh--ccCCEEeecccccCccc--C--CEEEeCCceee--CccccCCCCeEEEEECCCCc--eEEE
Confidence 00 00 0010 111 36899999999997532 2 46779998753 2333 347899999887664 6788
Q ss_pred EeeCCeEEEEEE
Q 029673 167 ELIDGEVKVDKI 178 (190)
Q Consensus 167 ~i~~~~~~~~~~ 178 (190)
+.....+....+
T Consensus 231 p~~~~~~~~i~~ 242 (340)
T PHA02546 231 ANPTTWHRRITY 242 (340)
T ss_pred eCCCceEEEEEe
Confidence 876666654433
No 30
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.71 E-value=7.2e-17 Score=121.81 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=82.4
Q ss_pred EEEecCCCCCCCC------------ChHHHHHhhhc--CCCccEEEEcCCCCCH----HHHHHHhhhCCcEEEecCCccc
Q 029673 5 LALGDLHIPHRAA------------DLPAKFKSMLV--PGKIQHIVCTGNLCIK----EVHDYLKIICPDLHIIRGEYDE 66 (190)
Q Consensus 5 ~~iSD~H~~~~~~------------~~~~~l~~~~~--~~~~D~vi~~GDl~~~----~~~~~l~~l~~~~~~v~GNHD~ 66 (190)
.++||+|++.... ++.+.+.+.+. -.++|.|+++||+++. +..+.++++..++++|+||||.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~l~~~~~~~~~v~GNHD~ 81 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTELELLSRLNGRKHLIKGNHDS 81 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHHHHHHHhCCCCeEEEeCCCCc
Confidence 5899999865321 01122233232 2368999999999982 2255677777789999999998
Q ss_pred ccC------------CCCceEEEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccC
Q 029673 67 ETR------------YPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPG 134 (190)
Q Consensus 67 ~~~------------~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpG 134 (190)
... .|....++.++.+++++|++..... . ..+.+++++||||.+..... .+.++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~H~~~~~~~-~---------~~~~d~vi~GHtH~~~~~~~-~~~~~n~~ 150 (168)
T cd07390 82 SLERKLLAFLLKFESVLQAVRLKIGGRRVYLSHYPILEWN-G---------LDRGSWNLHGHIHSNSPDIG-PPRRINVG 150 (168)
T ss_pred hhhhcccccccccceeeeEEEEEECCEEEEEEeCCcccCC-C---------CCCCeEEEEeeeCCCCCCCC-CCceEEEe
Confidence 642 2344567889999999997543211 0 24778999999999877531 15788887
Q ss_pred C
Q 029673 135 S 135 (190)
Q Consensus 135 s 135 (190)
.
T Consensus 151 ~ 151 (168)
T cd07390 151 V 151 (168)
T ss_pred E
Confidence 5
No 31
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.70 E-value=7.1e-17 Score=121.31 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=81.7
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCH----HHHH--HHhhhCCcEEEecCCcccccCC-------
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIK----EVHD--YLKIICPDLHIIRGEYDEETRY------- 70 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~----~~~~--~l~~l~~~~~~v~GNHD~~~~~------- 70 (190)
|+++||+|++... ....+.+...+.++|.|+++||+++. +... ...+...++++|+||||....+
T Consensus 1 ~~~iSDlH~~~~~--~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~~~~~~~~~~~v~~v~GNHD~~~~~~G~~~w~ 78 (166)
T cd07404 1 IQYLSDLHLEFED--NLADLLNFPIAPDADILVLAGDIGYLTDAPRFAPLLLALKGFEPVIYVPGNHEFYVRIIGTTLWS 78 (166)
T ss_pred CceEccccccCcc--ccccccccCCCCCCCEEEECCCCCCCcchHHHHHHHHhhcCCccEEEeCCCcceEEEEEeeeccc
Confidence 5799999986432 11222233456789999999999982 1111 1222346899999999986421
Q ss_pred --CC-------ceEEEECCEEEEEeecCccCC---CC------C---HHHHHHHhhcCCccEEEECcccCcceEEecCeE
Q 029673 71 --PE-------TKTLTIGQFKLGLCHGHQVIP---WG------D---LDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGV 129 (190)
Q Consensus 71 --p~-------~~~~~~~~~~i~~~Hg~~~~~---~~------~---~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~ 129 (190)
+. ...-+..+..|+++|.+|... +. . .+.+.++.+..++++++|||+|++.....+++.
T Consensus 79 ~~~~~~~~~~~~~~~d~~~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~~~~g~~ 158 (166)
T cd07404 79 DISLFGEAAARMRMNDFRGKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDYRIGGTR 158 (166)
T ss_pred ccCccchHHHHhCCCCCCCCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceEEECCEE
Confidence 11 011123356899999877531 10 1 112444556779999999999999888888876
Q ss_pred EE-cc
Q 029673 130 VI-NP 133 (190)
Q Consensus 130 ~i-np 133 (190)
++ ||
T Consensus 159 ~~~np 163 (166)
T cd07404 159 VLSNQ 163 (166)
T ss_pred EEecC
Confidence 44 44
No 32
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.69 E-value=5.3e-16 Score=125.52 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=47.6
Q ss_pred eEEEEEecCCCCCCCC-ChHHHHHhhhcCCCccEEEEcCCCCC-------HHHHHHHhhhC--CcEEEecCCcccc
Q 029673 2 VLVLALGDLHIPHRAA-DLPAKFKSMLVPGKIQHIVCTGNLCI-------KEVHDYLKIIC--PDLHIIRGEYDEE 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~-~~~~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~~l~--~~~~~v~GNHD~~ 67 (190)
|||+++||+|.+.... ...+++.+.+++++||.|+++||+++ .+..+.|+++. .|+++|+||||..
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~ 125 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRP 125 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcc
Confidence 7999999999853221 12234445556789999999999987 12344555554 5899999999975
No 33
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.68 E-value=2.7e-16 Score=123.45 Aligned_cols=131 Identities=17% Similarity=0.103 Sum_probs=85.7
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhc-CCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEecCCccccc-------
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLV-PGKIQHIVCTGNLCI-----KEVHDYLKIICPDLHIIRGEYDEET------- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~~------- 68 (190)
.|++++||+|++.. .+.+.+.+ +. +.+.|.++++||++| .++++++++. .+++|+||||...
T Consensus 17 ~ri~vigDIHG~~~--~L~~lL~~-i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~--~~~~v~GNHE~~~l~~~~~~ 91 (218)
T PRK11439 17 RHIWLVGDIHGCFE--QLMRKLRH-CRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH--WVRAVRGNHEQMALDALASQ 91 (218)
T ss_pred CeEEEEEcccCCHH--HHHHHHHh-cCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC--CceEeeCchHHHHHHHHHCC
Confidence 48999999999532 33333333 33 236899999999999 4677777763 4789999999542
Q ss_pred --------------------------------CCCCceEEEECCEEEEEeecCccCCCC---C----------HHHHHHH
Q 029673 69 --------------------------------RYPETKTLTIGQFKLGLCHGHQVIPWG---D----------LDSLAML 103 (190)
Q Consensus 69 --------------------------------~~p~~~~~~~~~~~i~~~Hg~~~~~~~---~----------~~~l~~~ 103 (190)
++|....++.++.+++++|+....... . .+.+...
T Consensus 92 ~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~~~~ 171 (218)
T PRK11439 92 QMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVYEWQKDVDLHQVLWSRSRLGER 171 (218)
T ss_pred ccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCchhhhccCCccceEEcChhhhhc
Confidence 123333344456678999976321110 0 1111111
Q ss_pred hh---cCCccEEEECcccCcceEEecCeEEEccCCCc
Q 029673 104 QR---QLDVDILVTGHTHQFTAYKHEGGVVINPGSAT 137 (190)
Q Consensus 104 ~~---~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~ 137 (190)
.. ..+.+++++||||.+.....++...|++||+-
T Consensus 172 ~~~~~~~~~~~vv~GHT~~~~~~~~~~~i~IDtGav~ 208 (218)
T PRK11439 172 QKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVF 208 (218)
T ss_pred cccccccCCCEEEECCccCCCccccCCEEEEECCCCC
Confidence 11 11556899999999988888889999999965
No 34
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.68 E-value=8.2e-16 Score=121.92 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=84.9
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhh-c-C-------CCccEEEEcCCCCC-----HHHHHHHhhhC--CcEEEecCCcc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSML-V-P-------GKIQHIVCTGNLCI-----KEVHDYLKIIC--PDLHIIRGEYD 65 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~-~-~-------~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~~~~v~GNHD 65 (190)
|||+++||+|++.. .+.+.+.++- . + .+.|.++++||++| .++++.|.++. ..+++|.||||
T Consensus 1 ~~i~vigDIHG~~~--~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYD--ELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHH--HHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCcH
Confidence 79999999998532 3333333320 1 1 13689999999999 57888887762 46899999999
Q ss_pred ccc--------------------------------------CCCCceEEEECCEEEEEeecCccCCC-C-CHHHH-----
Q 029673 66 EET--------------------------------------RYPETKTLTIGQFKLGLCHGHQVIPW-G-DLDSL----- 100 (190)
Q Consensus 66 ~~~--------------------------------------~~p~~~~~~~~~~~i~~~Hg~~~~~~-~-~~~~l----- 100 (190)
... .+|. ....++.+++++|+...... . ..+.+
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~--~~~~~~~~~~~vHag~~~~~~~~~~~~~~~~~~ 156 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPS--HLVLDEGKLVVAHAGIKEEMIGRDSKRVRSFAL 156 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCc--EEEeCCCcEEEEeCCCChHhccccchhheeeee
Confidence 742 1121 22334458999998632111 0 00000
Q ss_pred ----------------HHHhh-cCCccEEEECcccCcceEEecCeEEEccCCCc
Q 029673 101 ----------------AMLQR-QLDVDILVTGHTHQFTAYKHEGGVVINPGSAT 137 (190)
Q Consensus 101 ----------------~~~~~-~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~ 137 (190)
..+.+ ..+.+++++||||.+.....++...|++||+-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~GHt~~~~~~~~~~~i~IDtGav~ 210 (234)
T cd07423 157 YGDTTGETDEFGLPVRRDWAKEYRGDALVVYGHTPVPEPRWLNNTINIDTGCVF 210 (234)
T ss_pred cccccCCcCCCCCccchhhHhhCCCCeEEEECCCCCccceEeCCEEEEECCCCC
Confidence 00111 12457899999999988888899999999965
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.67 E-value=3.6e-16 Score=123.33 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=48.1
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC--HHHHHHHhhhCCcEEEecCCccccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI--KEVHDYLKIICPDLHIIRGEYDEET 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
.||+++||+|+... ....+.+++.+||.|+++||+.+ .+.++.|+++..|+++|+||||.+.
T Consensus 1 ~rIa~isDiHg~~~-----~~~~~~l~~~~pD~Vl~~GDi~~~~~~~~~~l~~l~~p~~~V~GNHD~~~ 64 (238)
T cd07397 1 LRIAIVGDVHGQWD-----LEDIKALHLLQPDLVLFVGDFGNESVQLVRAISSLPLPKAVILGNHDAWY 64 (238)
T ss_pred CEEEEEecCCCCch-----HHHHHHHhccCCCEEEECCCCCcChHHHHHHHHhCCCCeEEEcCCCcccc
Confidence 48999999997422 11223456678999999999998 4566778877778999999999863
No 36
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.67 E-value=5e-15 Score=129.06 Aligned_cols=137 Identities=24% Similarity=0.354 Sum_probs=93.8
Q ss_pred eEEEEEecCCCCCCCC--ChHHHHHhhhc---------CCCccEEEEcCCCCCH---------------------HHHHH
Q 029673 2 VLVLALGDLHIPHRAA--DLPAKFKSMLV---------PGKIQHIVCTGNLCIK---------------------EVHDY 49 (190)
Q Consensus 2 mri~~iSD~H~~~~~~--~~~~~l~~~~~---------~~~~D~vi~~GDl~~~---------------------~~~~~ 49 (190)
++|+++||+|.+.... .....|.+++. ..++|.|+++||+++. ++.+.
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~ 323 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEY 323 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHH
Confidence 5899999999764321 11244666665 5679999999999971 23345
Q ss_pred HhhhC--CcEEEecCCcccccC--------------CCC--------ceEEEECCEEEEEeecCccC------CC---CC
Q 029673 50 LKIIC--PDLHIIRGEYDEETR--------------YPE--------TKTLTIGQFKLGLCHGHQVI------PW---GD 96 (190)
Q Consensus 50 l~~l~--~~~~~v~GNHD~~~~--------------~p~--------~~~~~~~~~~i~~~Hg~~~~------~~---~~ 96 (190)
|+++. .++++++||||.... ++. ...++++|.+++++||.... +. ..
T Consensus 324 L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~idDl~~~i~~~s~~~ 403 (504)
T PRK04036 324 LKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRSIDDVISLIPGASYEK 403 (504)
T ss_pred HHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCCHHHHHhhcccccccC
Confidence 56653 489999999998631 111 22456789999999998632 11 11
Q ss_pred H-HHHHHHhh------------------------cCCccEEEECcccCcceEEecCeEEEccCCCcC
Q 029673 97 L-DSLAMLQR------------------------QLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 138 (190)
Q Consensus 97 ~-~~l~~~~~------------------------~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~ 138 (190)
+ +.+..+++ ..-++++++||+|.+.....+++++||+||+..
T Consensus 404 p~~~m~~~l~~rHlaPt~p~~~~~~p~~~D~lvi~~~Pdv~~~GH~H~~~~~~~~g~~~IN~gsf~~ 470 (504)
T PRK04036 404 PGKAMEELLKRRHLAPIYGGRTPIAPEKEDYLVIDEVPDIFHTGHVHINGYGKYRGVLLINSGTWQA 470 (504)
T ss_pred HHHHHHHHHHhcccCCCCCCCEEeCcCCCCCEEEecCCCEEEeCCCCccceEEECCEEEEECCcccc
Confidence 1 11222222 123589999999999998899999999999874
No 37
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.67 E-value=3.4e-16 Score=132.68 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=98.7
Q ss_pred eEEEEEecCCCCCCCC---Ch----HHH---HHhhhcCCCccEEEEcCCCCC---------HHHHHHHhhh---CCcEEE
Q 029673 2 VLVLALGDLHIPHRAA---DL----PAK---FKSMLVPGKIQHIVCTGNLCI---------KEVHDYLKII---CPDLHI 59 (190)
Q Consensus 2 mri~~iSD~H~~~~~~---~~----~~~---l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~l---~~~~~~ 59 (190)
|||+|+||+|++.... .+ .+. +.+++.+.++|+||++||++| ..+.+.|+++ +.|+++
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 8999999999973221 11 122 333346789999999999999 1234455555 479999
Q ss_pred ecCCcccccCCCCc---------eEE------------------------------------------------------
Q 029673 60 IRGEYDEETRYPET---------KTL------------------------------------------------------ 76 (190)
Q Consensus 60 v~GNHD~~~~~p~~---------~~~------------------------------------------------------ 76 (190)
++||||........ .+.
T Consensus 81 I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (390)
T COG0420 81 IAGNHDSPSRLSEASPLLLLNNLGLHGVVGRLVHEIRPPEIVAAPWLIPGPDPDVVFFLGLNGLEKEQFELLLHKGLLSA 160 (390)
T ss_pred ecCCCCchhccccccchHHHHcCCceeecccceecccccchhcceeeeccCCCcceeeeccCCchHHHHHHHHhHhHHhh
Confidence 99999998521100 000
Q ss_pred -EE-CCEEEEEeecCcc----CCCC--CHHHH-HHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCC
Q 029673 77 -TI-GQFKLGLCHGHQV----IPWG--DLDSL-AMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDV 147 (190)
Q Consensus 77 -~~-~~~~i~~~Hg~~~----~~~~--~~~~l-~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~ 147 (190)
.. ....|++.|...- .... ..... ........++|+..||.|.+......+..+.+|||+... +-.....
T Consensus 161 ~~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvALGHiH~~~~~~~~~~~i~y~GS~~~~-~f~E~~~ 239 (390)
T COG0420 161 LDPDDDPSILVLHQSIDALTSGAERDLALGTVDLSLLPKGGFDYVALGHIHKRQVIPKEDPPIVYPGSPERY-SFGEEGE 239 (390)
T ss_pred cCCccCceeeehhhhhcccccCCccceEEcccccccccCCCcceEEcCCcccccccCCCCCceecCCCceec-chhHcCC
Confidence 00 1245556665311 0000 00000 111222248999999999998876655455799999864 2223455
Q ss_pred CCcEEEEEEeCCeEEEEEEEe
Q 029673 148 NPSFVLMDIDGLRVVVYVYEL 168 (190)
Q Consensus 148 ~~~y~ll~~~~~~~~~~~~~i 168 (190)
..++.+++++.+. ...+..+
T Consensus 240 ~k~~~~v~~~~~~-~~~~~~~ 259 (390)
T COG0420 240 RKGVVLVEFSGGK-LWRFEEL 259 (390)
T ss_pred cccEEEEEecCCc-eeeeccc
Confidence 6777789999886 3444444
No 38
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.66 E-value=3.5e-15 Score=116.80 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=93.1
Q ss_pred eEEEEEecCCCCCCC-CC-hH---HHHHhhhcCCCccEEEEcCCCCC----H----HHHHHHhhh---CCcEEEecCCcc
Q 029673 2 VLVLALGDLHIPHRA-AD-LP---AKFKSMLVPGKIQHIVCTGNLCI----K----EVHDYLKII---CPDLHIIRGEYD 65 (190)
Q Consensus 2 mri~~iSD~H~~~~~-~~-~~---~~l~~~~~~~~~D~vi~~GDl~~----~----~~~~~l~~l---~~~~~~v~GNHD 65 (190)
.+|+++||+|..... .. +. +.+.+.+++.++|+|+++||+++ . ...+.++++ +.|+++++||||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 489999999974321 11 11 12333335678999999999998 1 122344444 478999999999
Q ss_pred cccCCCC-----------ceEEEE-CCEEEEEeecCccCC--CC-----------CHHHHHHHhhcC-CccEEEECcccC
Q 029673 66 EETRYPE-----------TKTLTI-GQFKLGLCHGHQVIP--WG-----------DLDSLAMLQRQL-DVDILVTGHTHQ 119 (190)
Q Consensus 66 ~~~~~p~-----------~~~~~~-~~~~i~~~Hg~~~~~--~~-----------~~~~l~~~~~~~-~~~~~i~GH~H~ 119 (190)
....+.- ..+-.. +...|+++|.++... +. ..+.+.++++++ +++.+++||.|.
T Consensus 81 ~~~~ld~~~~~~ql~WL~~~L~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~ 160 (214)
T cd07399 81 LVLALEFGPRDEVLQWANEVLKKHPDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHG 160 (214)
T ss_pred chhhCCCCCCHHHHHHHHHHHHHCCCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCC
Confidence 7542221 011111 345688888776521 11 123455667665 799999999999
Q ss_pred cceEEec-----C-e---EEEccCCCcCCCCCCCCCCCCcEEEEEEeCCeEEEEE
Q 029673 120 FTAYKHE-----G-G---VVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYV 165 (190)
Q Consensus 120 ~~~~~~~-----~-~---~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~~~~~~~ 165 (190)
+...... | . .+.+. . .....+.+.|.+++++.+..++.+
T Consensus 161 ~~~~~~~~~~~~g~~v~~~~~~~-q------~~~~~g~~~~r~~~f~~~~~~i~~ 208 (214)
T cd07399 161 AGRTTLVSVGDAGRTVHQMLADY-Q------GEPNGGNGFLRLLEFDPDNNKIDV 208 (214)
T ss_pred CceEEEcccCCCCCEeeEEeecc-c------CCCCCCcceEEEEEEecCCCEEEE
Confidence 8766551 1 1 11122 1 112234678999999876544433
No 39
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.66 E-value=2.8e-16 Score=115.50 Aligned_cols=119 Identities=20% Similarity=0.206 Sum_probs=77.6
Q ss_pred eEEEEEecCCCCCCCCC-hHHHHHhhhcCCCccEEEEcCCCCC-----HHHH------HHHhhhCCcEEEecCCcccccC
Q 029673 2 VLVLALGDLHIPHRAAD-LPAKFKSMLVPGKIQHIVCTGNLCI-----KEVH------DYLKIICPDLHIIRGEYDEETR 69 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~-~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~------~~l~~l~~~~~~v~GNHD~~~~ 69 (190)
|||+++||+|+...... ....+.....+.++|+|+++||+++ .... ........|+++++||||....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 89999999998532110 0123344445789999999999998 1111 1223345799999999999840
Q ss_pred ------------C------------CC-----------------------------------ceEEEECCEEEEEeecCc
Q 029673 70 ------------Y------------PE-----------------------------------TKTLTIGQFKLGLCHGHQ 90 (190)
Q Consensus 70 ------------~------------p~-----------------------------------~~~~~~~~~~i~~~Hg~~ 90 (190)
. +. .........+|+++|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~ 160 (200)
T PF00149_consen 81 NSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPP 160 (200)
T ss_dssp HHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSS
T ss_pred ccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEEEecCC
Confidence 0 00 001123467899999888
Q ss_pred cCCCCC----------HHHHHHHhhcCCccEEEECcccCc
Q 029673 91 VIPWGD----------LDSLAMLQRQLDVDILVTGHTHQF 120 (190)
Q Consensus 91 ~~~~~~----------~~~l~~~~~~~~~~~~i~GH~H~~ 120 (190)
...... .+.+..+.+..+++++++||+|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 161 YSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp STTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred CCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 643322 234556778899999999999975
No 40
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.63 E-value=1.3e-14 Score=117.30 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=109.7
Q ss_pred eEEEEEecCCCC-CC-CCChHHHHHhhhcCCCccEEEEcCCCCC---------H---HHHH-HHhh--hCCcEEEecCCc
Q 029673 2 VLVLALGDLHIP-HR-AADLPAKFKSMLVPGKIQHIVCTGNLCI---------K---EVHD-YLKI--ICPDLHIIRGEY 64 (190)
Q Consensus 2 mri~~iSD~H~~-~~-~~~~~~~l~~~~~~~~~D~vi~~GDl~~---------~---~~~~-~l~~--l~~~~~~v~GNH 64 (190)
+++++++|.=.. .. ...+.+.+.+++++.++|+||++||++- . +.++ .+++ +..|+++++|||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 479999999763 11 1123344555556689999999999862 1 1222 2222 357899999999
Q ss_pred ccccC-----------------CCCc-eEEEE------------------------------------------------
Q 029673 65 DEETR-----------------YPET-KTLTI------------------------------------------------ 78 (190)
Q Consensus 65 D~~~~-----------------~p~~-~~~~~------------------------------------------------ 78 (190)
|.... +|.. ..+..
T Consensus 81 D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~ 160 (277)
T cd07378 81 DYSGNVSAQIDYTKRPNSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKT 160 (277)
T ss_pred ccCCCchheeehhccCCCCCccCcchheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHH
Confidence 98631 1110 00111
Q ss_pred -----CCEEEEEeecCccCCCC------CHHHHHHHhhcCCccEEEECcccCcceEEec--CeEEEccCCCcCCCCCCC-
Q 029673 79 -----GQFKLGLCHGHQVIPWG------DLDSLAMLQRQLDVDILVTGHTHQFTAYKHE--GGVVINPGSATGAFSSIT- 144 (190)
Q Consensus 79 -----~~~~i~~~Hg~~~~~~~------~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~--~~~~inpGs~~~~~~~~~- 144 (190)
..++|+++|.+++.... ..+.+..++++++++++++||+|.......+ ++.++..|+.+.......
T Consensus 161 L~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~~~~~~~~i~~G~~~~~~~~~~~ 240 (277)
T cd07378 161 LAASTADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKDDGSGTSFVVSGAGSKARPSVKH 240 (277)
T ss_pred HHhcCCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeeecCCCCcEEEEeCCCcccCCCCCc
Confidence 12467777766542211 1234566777889999999999998877776 899999988776432211
Q ss_pred -----------CCCCCcEEEEEEeCCeEEEEEEEee
Q 029673 145 -----------YDVNPSFVLMDIDGLRVVVYVYELI 169 (190)
Q Consensus 145 -----------~~~~~~y~ll~~~~~~~~~~~~~i~ 169 (190)
.....+|+++++.+++++++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~~ 276 (277)
T cd07378 241 IDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDAD 276 (277)
T ss_pred cCcccccccccccCCCCEEEEEEecCEEEEEEECCC
Confidence 2245899999999999999988754
No 41
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.63 E-value=3.6e-15 Score=126.85 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=46.1
Q ss_pred CccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCC-CCCCcEEEEEEeCCe-EEEEEEEeeC-CeEEE
Q 029673 108 DVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITY-DVNPSFVLMDIDGLR-VVVYVYELID-GEVKV 175 (190)
Q Consensus 108 ~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~-~~~~~y~ll~~~~~~-~~~~~~~i~~-~~~~~ 175 (190)
++||+..||.|.+.... +...+..+||+-.. .+++ ....++.+++++.++ .+++.+++.. .+++.
T Consensus 220 ~~dYvALGHlH~~Q~v~-~~~~vrYsGSpl~~--sFsE~~~~K~v~lVel~~~~~~~v~~i~l~~~~~l~~ 287 (407)
T PRK10966 220 PADYIALGHIHRAQKVG-GTEHIRYSGSPIPL--SFDELGKSKSVHLVEFDQGKLQSVTPLPVPVFQPMAV 287 (407)
T ss_pred ccCeeeccccccCcCCC-CCCcEEEcCCCCCC--CccccCCCCeEEEEEEcCCccceEEEEECCCCceeEE
Confidence 58999999999997652 22356779998763 3333 345899999998664 6888888864 44433
No 42
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.63 E-value=6.9e-15 Score=116.88 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=85.0
Q ss_pred EEEEEecCCCCCCCCC---hHHHHHhhhcCCCccEEEEcCCCCC--HH---HHHHHhhh-CCcEEEecCCcccccC----
Q 029673 3 LVLALGDLHIPHRAAD---LPAKFKSMLVPGKIQHIVCTGNLCI--KE---VHDYLKII-CPDLHIIRGEYDEETR---- 69 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~---~~~~l~~~~~~~~~D~vi~~GDl~~--~~---~~~~l~~l-~~~~~~v~GNHD~~~~---- 69 (190)
||+++||+|+...... ..+++.+.+++.++|.|+++||+++ .+ .++.+.++ ..|+++|+||||....
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNHD~~~~~~~~ 80 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNHDMLKDLTYE 80 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCCCCCCCCCHH
Confidence 7999999997532211 1233444455678999999999998 22 33444442 3689999999997410
Q ss_pred -C------------------CC------c--------------------------e-EE---------------------
Q 029673 70 -Y------------------PE------T--------------------------K-TL--------------------- 76 (190)
Q Consensus 70 -~------------------p~------~--------------------------~-~~--------------------- 76 (190)
+ .. . . ..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 160 (239)
T TIGR03729 81 EIESNDSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLN 160 (239)
T ss_pred HHHhccchhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHH
Confidence 0 00 0 0 00
Q ss_pred -EECCEEEEEeecCccC---------C-C------CCHHHHHHHhhcCCccEEEECcccCcc-eEEecCeEEEcc
Q 029673 77 -TIGQFKLGLCHGHQVI---------P-W------GDLDSLAMLQRQLDVDILVTGHTHQFT-AYKHEGGVVINP 133 (190)
Q Consensus 77 -~~~~~~i~~~Hg~~~~---------~-~------~~~~~l~~~~~~~~~~~~i~GH~H~~~-~~~~~~~~~inp 133 (190)
..++..|+++|.+|.. + + .+...+.++++++++++++|||+|... ...++++.++|+
T Consensus 161 ~~~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~~~~~i~~~~~~~~ 235 (239)
T TIGR03729 161 QLDNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRFGPLTIGGTTYHNR 235 (239)
T ss_pred hcCCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCCCCEEECCEEEEec
Confidence 0013468888876532 1 1 123566777777799999999999997 556799999886
No 43
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.61 E-value=1.6e-14 Score=117.67 Aligned_cols=169 Identities=14% Similarity=0.186 Sum_probs=107.4
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhc-CCCccEEEEcCCCCC----H--H----HHHHHhhh--CCcEEEecCCccccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLV-PGKIQHIVCTGNLCI----K--E----VHDYLKII--CPDLHIIRGEYDEET 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~----~--~----~~~~l~~l--~~~~~~v~GNHD~~~ 68 (190)
.|+++++|+|.... ...+.+.++.+ ..++|+|+++||++. . + ..+.++.+ ..|+++++||||...
T Consensus 5 ~~f~v~gD~~~~~~--~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~ 82 (294)
T cd00839 5 FKFAVFGDMGQNTN--NSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEADY 82 (294)
T ss_pred EEEEEEEECCCCCC--CcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCccccccc
Confidence 58999999996321 22334444443 378999999999984 1 1 22334443 368999999999863
Q ss_pred CC--------------C---------CceEEEEC--------------------------------------CEEEEEee
Q 029673 69 RY--------------P---------ETKTLTIG--------------------------------------QFKLGLCH 87 (190)
Q Consensus 69 ~~--------------p---------~~~~~~~~--------------------------------------~~~i~~~H 87 (190)
.. + ....++.+ .+.|++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H 162 (294)
T cd00839 83 NFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGH 162 (294)
T ss_pred CCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEec
Confidence 10 0 00011111 23566777
Q ss_pred cCccCCC----------CCHHHHHHHhhcCCccEEEECcccCcceEE----------------ecCeEEEccCCCcCCCC
Q 029673 88 GHQVIPW----------GDLDSLAMLQRQLDVDILVTGHTHQFTAYK----------------HEGGVVINPGSATGAFS 141 (190)
Q Consensus 88 g~~~~~~----------~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~----------------~~~~~~inpGs~~~~~~ 141 (190)
.+++... ...+.+..++++++++++++||+|...... -+++.+|..|+.|....
T Consensus 163 ~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~ 242 (294)
T cd00839 163 RPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEG 242 (294)
T ss_pred cCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccC
Confidence 5554211 112345567788899999999999865432 15788998888886543
Q ss_pred CCC-----------CCCCCcEEEEEEeCC-eEEEEEEEeeCCe
Q 029673 142 SIT-----------YDVNPSFVLMDIDGL-RVVVYVYELIDGE 172 (190)
Q Consensus 142 ~~~-----------~~~~~~y~ll~~~~~-~~~~~~~~i~~~~ 172 (190)
... .....+|+++++.++ .+..+++...+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~ 285 (294)
T cd00839 243 LDPFSAPPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGV 285 (294)
T ss_pred cCcccCCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCe
Confidence 211 235579999999887 7889888866553
No 44
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.61 E-value=6.6e-15 Score=115.29 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=49.3
Q ss_pred eEEEEEecCCCCCCCC-ChHHHHHhhhcCCCccEEEEcCCCCCH------HHHHHHhhhC--CcEEEecCCccccc
Q 029673 2 VLVLALGDLHIPHRAA-DLPAKFKSMLVPGKIQHIVCTGNLCIK------EVHDYLKIIC--PDLHIIRGEYDEET 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~-~~~~~l~~~~~~~~~D~vi~~GDl~~~------~~~~~l~~l~--~~~~~v~GNHD~~~ 68 (190)
|||+++||+|++.... ...+++.+.+++.++|.|+++||+++. ...+.++++. .++++++||||...
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYS 77 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCccccc
Confidence 7999999999865421 123445555567899999999999981 3344555553 58999999999874
No 45
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.60 E-value=2.6e-14 Score=113.85 Aligned_cols=134 Identities=23% Similarity=0.314 Sum_probs=87.4
Q ss_pred EEEecCCCCCCCC--ChHHHHHhhhcCC-----CccEEEEcCCCCCH---------------------HHHHHHhhhC--
Q 029673 5 LALGDLHIPHRAA--DLPAKFKSMLVPG-----KIQHIVCTGNLCIK---------------------EVHDYLKIIC-- 54 (190)
Q Consensus 5 ~~iSD~H~~~~~~--~~~~~l~~~~~~~-----~~D~vi~~GDl~~~---------------------~~~~~l~~l~-- 54 (190)
+++||+|++.... ...+.|.++++.. ++|.|+++||+++. .+.+.|+++.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 6899999754321 1123456655433 57999999999972 1233445553
Q ss_pred CcEEEecCCcccccC-CC---------------------CceEEEECCEEEEEeecCccC------CCC---CHHHH-HH
Q 029673 55 PDLHIIRGEYDEETR-YP---------------------ETKTLTIGQFKLGLCHGHQVI------PWG---DLDSL-AM 102 (190)
Q Consensus 55 ~~~~~v~GNHD~~~~-~p---------------------~~~~~~~~~~~i~~~Hg~~~~------~~~---~~~~l-~~ 102 (190)
.++++++||||.... +| ....++++|.+|+++||.... ... .+..+ +.
T Consensus 82 ~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~~~~~~~~~~~~~~ 161 (243)
T cd07386 82 IKIIIIPGNHDAVRQAEPQPALPEEIRKLFLPGNVEFVSNPALVKIHGVDVLIYHGRSIDDVVKLIPGLSYDKPGKAMEE 161 (243)
T ss_pred CeEEEeCCCCCcccccCCCCCccHHHHhhcCCCceEEeCCCCEEEECCEEEEEECCCCHHHHHHhCCCCCcccHHHHHHH
Confidence 589999999999631 11 123456789999999986421 000 01111 00
Q ss_pred ------------------------HhhcCCccEEEECcccCcceEEecCeEEEccCCCcC
Q 029673 103 ------------------------LQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 138 (190)
Q Consensus 103 ------------------------~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~ 138 (190)
+.-...++++++||+|.+.....+++.++||||+..
T Consensus 162 ~l~~~hl~P~~~~~~~~~~~~~~~~~~~~~p~vii~Gh~h~~~~~~~~~~~~vn~Gsf~~ 221 (243)
T cd07386 162 LLKRRHLAPIYGGRTPIAPEPEDYLVIDEVPDILHTGHVHVYGVGVYRGVLLVNSGTWQS 221 (243)
T ss_pred HHhhcccCCCCCCCEeeCCCCCCCEEecCCCCEEEECCCCchHhEEECCEEEEECCCCcC
Confidence 011224689999999999988889999999999874
No 46
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=99.58 E-value=2.1e-14 Score=104.52 Aligned_cols=123 Identities=16% Similarity=0.109 Sum_probs=83.5
Q ss_pred CeEEEEEecCCCCCCCC-------C---hHHHHHh-hhc-CCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEecCC
Q 029673 1 MVLVLALGDLHIPHRAA-------D---LPAKFKS-MLV-PGKIQHIVCTGNLCI-----KEVHDYLKIICPDLHIIRGE 63 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~-------~---~~~~l~~-~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GN 63 (190)
|.++.++||||.++..- + ..+.+.+ +.+ -..-|.++++||+.. .+..+.+++|++...+|+||
T Consensus 3 m~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGrkhlv~GN 82 (186)
T COG4186 3 MTMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNGRKHLVPGN 82 (186)
T ss_pred eeEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCCcEEEeeCC
Confidence 78899999999865321 1 1122222 112 246789999999986 45667788899889999999
Q ss_pred cccccC---------CCCceEEEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceE
Q 029673 64 YDEETR---------YPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAY 123 (190)
Q Consensus 64 HD~~~~---------~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~ 123 (190)
||..-. +....+++.+|.+++++|-+...+....+..+..-......++|+||.|.+...
T Consensus 83 hDk~~~~~~~~~~~svq~f~~ie~dg~~~~LsHyP~~~~~~~~~~~r~~y~~~~~~llIHGH~H~~~~k 151 (186)
T COG4186 83 HDKCHPMYRHAYFDSVQAFQRIEWDGEDVYLSHYPRPGQDHPGMESRFDYLRLRVPLLIHGHLHSQFPK 151 (186)
T ss_pred CCCCcccccchhhHHHHHHHheeECCeEEEEEeCCCCCCCCcchhhhHHHHhccCCeEEeccccccccC
Confidence 999742 123457889999999999766544322222222222347789999999985543
No 47
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.56 E-value=4.5e-14 Score=100.08 Aligned_cols=111 Identities=26% Similarity=0.432 Sum_probs=77.5
Q ss_pred EEEecCCCCCCCCChHHHH-HhhhcCCCccEEEEcCCCCCH-----H-H---HHHHhhhCCcEEEecCCcccccCCCCce
Q 029673 5 LALGDLHIPHRAADLPAKF-KSMLVPGKIQHIVCTGNLCIK-----E-V---HDYLKIICPDLHIIRGEYDEETRYPETK 74 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l-~~~~~~~~~D~vi~~GDl~~~-----~-~---~~~l~~l~~~~~~v~GNHD~~~~~p~~~ 74 (190)
+++||+|..... ..... .....+.++|.|+++||+++. + . ...+.+...|+++++||||
T Consensus 1 ~~~gD~h~~~~~--~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD--------- 69 (131)
T cd00838 1 AVISDIHGNLEA--LEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD--------- 69 (131)
T ss_pred CeeecccCCccc--hHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce---------
Confidence 478999986432 22211 233467899999999999981 1 1 1223444579999999999
Q ss_pred EEEECCEEEEEeecCccCCCCC--------HHHHHHHhhcCCccEEEECcccCcceEE--ecCeEEEccC
Q 029673 75 TLTIGQFKLGLCHGHQVIPWGD--------LDSLAMLQRQLDVDILVTGHTHQFTAYK--HEGGVVINPG 134 (190)
Q Consensus 75 ~~~~~~~~i~~~Hg~~~~~~~~--------~~~l~~~~~~~~~~~~i~GH~H~~~~~~--~~~~~~inpG 134 (190)
|+++|.++...... ...+.......+++++++||+|.+.... ..++.++++|
T Consensus 70 --------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~~~~~~~~v~~g 131 (131)
T cd00838 70 --------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERREPDGGGTLYINPG 131 (131)
T ss_pred --------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeeccccccCCCCceEEecCC
Confidence 99999887643321 2444556667799999999999998766 4567777765
No 48
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=9.5e-15 Score=117.11 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=47.0
Q ss_pred eEEEEEecCCCCCCCCC---------hHHHHHhhhcCCCccEEEEcCCCCCH-----H----HHHHHh---hhC-CcEEE
Q 029673 2 VLVLALGDLHIPHRAAD---------LPAKFKSMLVPGKIQHIVCTGNLCIK-----E----VHDYLK---IIC-PDLHI 59 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~---------~~~~l~~~~~~~~~D~vi~~GDl~~~-----~----~~~~l~---~l~-~~~~~ 59 (190)
|||+++||+|++..... ..+++.+.+.++++|+|+++||++|. + ..+.++ +.. .|+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 89999999998653221 12234444567899999999999991 1 123333 334 68999
Q ss_pred ecCCccccc
Q 029673 60 IRGEYDEET 68 (190)
Q Consensus 60 v~GNHD~~~ 68 (190)
++||||...
T Consensus 81 i~GNHD~~~ 89 (253)
T TIGR00619 81 ISGNHDSAQ 89 (253)
T ss_pred EccCCCChh
Confidence 999999873
No 49
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.56 E-value=7.1e-14 Score=113.12 Aligned_cols=164 Identities=21% Similarity=0.293 Sum_probs=95.3
Q ss_pred eEEEEEecCCCCC-CCC--ChHHHHHhhhcCCCccEEEEcCCCCC-------HHHHHHHh--hhCCcEEEecCCcccccC
Q 029673 2 VLVLALGDLHIPH-RAA--DLPAKFKSMLVPGKIQHIVCTGNLCI-------KEVHDYLK--IICPDLHIIRGEYDEETR 69 (190)
Q Consensus 2 mri~~iSD~H~~~-~~~--~~~~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~--~l~~~~~~v~GNHD~~~~ 69 (190)
|||++|||+|... ... ...+.+.+.++..++|.|+++||+++ ....++|+ .+..+++++|||||....
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVVPGNHDARVV 80 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCCCceEeeCCCCcCCch
Confidence 7999999999862 211 12233444456788999999999998 23445666 455789999999998741
Q ss_pred --------------------C-CCceEE---------------------------EECC---EEEEEeecCccC-CCC--
Q 029673 70 --------------------Y-PETKTL---------------------------TIGQ---FKLGLCHGHQVI-PWG-- 95 (190)
Q Consensus 70 --------------------~-p~~~~~---------------------------~~~~---~~i~~~Hg~~~~-~~~-- 95 (190)
. +...++ .... .+++++|.++.. +..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~ 160 (301)
T COG1409 81 NGEAFSDQFFNRYAVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGV 160 (301)
T ss_pred HHHHhhhhhcccCcceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEEecCCCCCCCCCcc
Confidence 0 000000 0111 245666655542 111
Q ss_pred ------CHHHHHHHhhcCC--ccEEEECcccCc--ceEEecCeEEEc----cCCCcCCCCCCCCCCCCcEEEEEEeCCeE
Q 029673 96 ------DLDSLAMLQRQLD--VDILVTGHTHQF--TAYKHEGGVVIN----PGSATGAFSSITYDVNPSFVLMDIDGLRV 161 (190)
Q Consensus 96 ------~~~~l~~~~~~~~--~~~~i~GH~H~~--~~~~~~~~~~in----pGs~~~~~~~~~~~~~~~y~ll~~~~~~~ 161 (190)
+...+...++..+ ++++++||.|.. ......+..+.+ .++..+. .........+..+++.....
T Consensus 161 ~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 238 (301)
T COG1409 161 DRVALRDAGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCS--QVFRGSATAFNTLDLDGPGV 238 (301)
T ss_pred ceeeeecchhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeeecccccCCccce--eecCCCccceeeeeecCCCe
Confidence 2233344445556 999999999999 666666665553 3332221 11233444555666666555
Q ss_pred EEEEEE
Q 029673 162 VVYVYE 167 (190)
Q Consensus 162 ~~~~~~ 167 (190)
.+....
T Consensus 239 ~~~~~~ 244 (301)
T COG1409 239 RVLVLA 244 (301)
T ss_pred eEEEEe
Confidence 443333
No 50
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=99.55 E-value=5.1e-14 Score=110.91 Aligned_cols=109 Identities=25% Similarity=0.459 Sum_probs=76.4
Q ss_pred EEEEEecCCCCCCCC-----------C---hHHHHHhhhcCCCccEEEEcCCCCC--------HHHHHHHhhhCCcEEEe
Q 029673 3 LVLALGDLHIPHRAA-----------D---LPAKFKSMLVPGKIQHIVCTGNLCI--------KEVHDYLKIICPDLHII 60 (190)
Q Consensus 3 ri~~iSD~H~~~~~~-----------~---~~~~l~~~~~~~~~D~vi~~GDl~~--------~~~~~~l~~l~~~~~~v 60 (190)
+.+++||+|++.... . ..+++.+++++.++|.|+++||+++ .+..++++++..++++|
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~V 95 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLILI 95 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEEE
Confidence 679999999864211 0 1223444456788999999999996 23445677777789999
Q ss_pred cCCccccc---CCCCceEEEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceE
Q 029673 61 RGEYDEET---RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAY 123 (190)
Q Consensus 61 ~GNHD~~~---~~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~ 123 (190)
+||||... .++....+.++++ .++||+.. + +.+ ..+.+++++||+|.....
T Consensus 96 ~GNHD~~~~~~~~~~~~~~~lg~~--~l~HGh~~-~--~~~-------~~~~d~~I~GH~HP~i~l 149 (225)
T TIGR00024 96 RGNHDALIPYIGLSGEESIRIGKY--LIFHGHAV-P--DEE-------DLDAKVLIFGHEHPAVKL 149 (225)
T ss_pred CCCCCCccccCCCCccceEEECCE--EEEeCCCC-C--Ccc-------cccCCEEEECCCCceEEE
Confidence 99999853 4555666777885 99999863 2 111 125689999999986543
No 51
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=99.52 E-value=2.3e-14 Score=108.51 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=67.1
Q ss_pred EEEecCCCCCCCC--------------ChHHHHHhhhcCCCccEEEEcCCCCC------HHHHH-----HHhhhCCcEEE
Q 029673 5 LALGDLHIPHRAA--------------DLPAKFKSMLVPGKIQHIVCTGNLCI------KEVHD-----YLKIICPDLHI 59 (190)
Q Consensus 5 ~~iSD~H~~~~~~--------------~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~-----~l~~l~~~~~~ 59 (190)
+++||+|++.... ...+++.+++++.++|.|+++||+++ .+... .+.....++++
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVIL 80 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEE
Confidence 5899999864210 11234556667789999999999997 11111 12223468999
Q ss_pred ecCCcccccCC----CCceE-EEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceE
Q 029673 60 IRGEYDEETRY----PETKT-LTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAY 123 (190)
Q Consensus 60 v~GNHD~~~~~----p~~~~-~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~ 123 (190)
|+||||..... +.... -.+...+++++||+..... .+.+++++||+| |...
T Consensus 81 i~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~HG~~~~~~------------~~~~~~i~GH~H-P~~~ 136 (172)
T cd07391 81 IRGNHDGGLPEILKDLNVEVVEGLLLGGFLFFHGHKPPPP------------LDAELVIIGHEH-PAIR 136 (172)
T ss_pred EcccCccchhhhhhcCcEeecCCEEECCEEEEeCCCCCCc------------CCCCEEEEccCC-CcEE
Confidence 99999997531 11110 0112347899999764210 356899999999 5553
No 52
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.48 E-value=1.3e-13 Score=102.94 Aligned_cols=124 Identities=20% Similarity=0.205 Sum_probs=78.0
Q ss_pred EEEecCCCCCCCC-Ch----------HHHHHhhhcCCCccEEEEcCCCCCH----------HHHHHHhhh-----CCcEE
Q 029673 5 LALGDLHIPHRAA-DL----------PAKFKSMLVPGKIQHIVCTGNLCIK----------EVHDYLKII-----CPDLH 58 (190)
Q Consensus 5 ~~iSD~H~~~~~~-~~----------~~~l~~~~~~~~~D~vi~~GDl~~~----------~~~~~l~~l-----~~~~~ 58 (190)
+++||+|+..... .+ .+.+.+++++.+||.|+++||+++. +....+.++ ..|++
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLH 80 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEE
Confidence 3689999733222 12 1234555677899999999999971 122333332 35899
Q ss_pred EecCCcccccCCCC--ceEEEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcc-eEEecCeEEEccCC
Q 029673 59 IIRGEYDEETRYPE--TKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFT-AYKHEGGVVINPGS 135 (190)
Q Consensus 59 ~v~GNHD~~~~~p~--~~~~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~-~~~~~~~~~inpGs 135 (190)
+|+||||.....+. ..+......-|++.|.+. ..+..+.+++++++||+|... ....+++..+...|
T Consensus 81 ~v~GNHD~~~~~~~~~~~~~~~~~~~~~l~H~p~----------~~~~~~~~~~~~l~GH~H~~~~~~~~~~~~e~~~~~ 150 (156)
T cd08165 81 VVVGNHDIGFHYEMTTYKLERFEKVFILLQHFPL----------YRLLQWLKPRLVLSGHTHSFCEVTHPDGTPEVTVPS 150 (156)
T ss_pred EEcCCCCcCCCCccCHHHHHHHHHHeeeeeCChH----------HHHHHhhCCCEEEEcccCCCceeEEECCEEEEEEec
Confidence 99999999642221 111011111288888632 123345577899999999864 44668888888888
Q ss_pred CcC
Q 029673 136 ATG 138 (190)
Q Consensus 136 ~~~ 138 (190)
++.
T Consensus 151 ~~~ 153 (156)
T cd08165 151 FSW 153 (156)
T ss_pred cee
Confidence 774
No 53
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.42 E-value=4.2e-12 Score=101.97 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=43.6
Q ss_pred EEEEecCCCCCCCCChH----HHHHhhhcCCCccEEEEcCCCCCH----------------HHHHHHhhh----CCcEEE
Q 029673 4 VLALGDLHIPHRAADLP----AKFKSMLVPGKIQHIVCTGNLCIK----------------EVHDYLKII----CPDLHI 59 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~----~~l~~~~~~~~~D~vi~~GDl~~~----------------~~~~~l~~l----~~~~~~ 59 (190)
|+++||+|.+....+.. +.+.+.+++.+||+|+++||+++. +.++.+.+. ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 78999999865432221 224555678899999999999971 112222222 258999
Q ss_pred ecCCcccc
Q 029673 60 IRGEYDEE 67 (190)
Q Consensus 60 v~GNHD~~ 67 (190)
++||||.+
T Consensus 82 v~GNHD~~ 89 (256)
T cd07401 82 IRGNHDLF 89 (256)
T ss_pred eCCCCCcC
Confidence 99999985
No 54
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.41 E-value=4.7e-13 Score=101.29 Aligned_cols=107 Identities=19% Similarity=0.100 Sum_probs=69.0
Q ss_pred HHHhhhcCCCccEEEEcCCCCCH----------HHHHHHhhh---------CCcEEEecCCcccccCCCC---ceEEEEC
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIK----------EVHDYLKII---------CPDLHIIRGEYDEETRYPE---TKTLTIG 79 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~----------~~~~~l~~l---------~~~~~~v~GNHD~~~~~p~---~~~~~~~ 79 (190)
.+..++++.+||.|+++||+++. +..+.++++ ..++++|+||||....-.. .......
T Consensus 36 ~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~~~~~~~~~~~~~f~ 115 (171)
T cd07384 36 AFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGYGEVISFPEVVDRFE 115 (171)
T ss_pred HHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCCCCccccHHHHHHHH
Confidence 45555678899999999999981 123334332 4589999999999752111 1111122
Q ss_pred CEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEec----CeEEEccCCCcC
Q 029673 80 QFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHE----GGVVINPGSATG 138 (190)
Q Consensus 80 ~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~----~~~~inpGs~~~ 138 (190)
..-|+++|.+.. .+++..+++++++||+|........ .+.-|...|++.
T Consensus 116 ~~fi~l~H~p~~----------~~~~~~~~~~~lsGH~H~~~~~~~~~~~~~~~ei~v~S~s~ 168 (171)
T cd07384 116 RYFILLTHIPLY----------RLLDTIKPVLILSGHDHDQCEVVHSSKAGSVREITVKSFSW 168 (171)
T ss_pred hhheeEECCccH----------HHHhccCceEEEeCcccCCeEEEecCCCCCceEEeeccchh
Confidence 222889996431 1445568899999999988665443 356667766664
No 55
>PLN02533 probable purple acid phosphatase
Probab=99.41 E-value=4.6e-11 Score=102.41 Aligned_cols=180 Identities=14% Similarity=0.140 Sum_probs=111.1
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCH----H----HHHHHhhh--CCcEEEecCCccccc---
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIK----E----VHDYLKII--CPDLHIIRGEYDEET--- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~----~----~~~~l~~l--~~~~~~v~GNHD~~~--- 68 (190)
.|+++++|++... ..+...+.+++.++|+|+++||++.. . ..+.++.+ ..|++.++||||...
T Consensus 140 ~~f~v~GDlG~~~----~~~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~ 215 (427)
T PLN02533 140 IKFAVSGDLGTSE----WTKSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPI 215 (427)
T ss_pred eEEEEEEeCCCCc----ccHHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCcccccccccc
Confidence 5899999998532 11223333456799999999999861 1 12233333 268999999999741
Q ss_pred -------------CCCC---------ceEEEEC-----------------------------------CEEEEEeecCcc
Q 029673 69 -------------RYPE---------TKTLTIG-----------------------------------QFKLGLCHGHQV 91 (190)
Q Consensus 69 -------------~~p~---------~~~~~~~-----------------------------------~~~i~~~Hg~~~ 91 (190)
.+|. ...++.+ .+.|++.|.+++
T Consensus 216 ~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y 295 (427)
T PLN02533 216 LHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWY 295 (427)
T ss_pred ccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCee
Confidence 1121 1112211 245666776654
Q ss_pred CCC---C-------CHHHHHHHhhcCCccEEEECcccCcceEE--------ecCeEEEccCCCcCCCC-------CC---
Q 029673 92 IPW---G-------DLDSLAMLQRQLDVDILVTGHTHQFTAYK--------HEGGVVINPGSATGAFS-------SI--- 143 (190)
Q Consensus 92 ~~~---~-------~~~~l~~~~~~~~~~~~i~GH~H~~~~~~--------~~~~~~inpGs~~~~~~-------~~--- 143 (190)
... . ..+.++.++.++++|++++||.|...... ..++.+|..|+.|..-. +.
T Consensus 296 ~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~ 375 (427)
T PLN02533 296 NSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKYIDPKPDI 375 (427)
T ss_pred ecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccccCCCCCCc
Confidence 211 0 12345667788999999999999765321 24678888888664311 00
Q ss_pred --CCCCCCcEEEEEEe-CCeEEEEEEEeeCC-eEEEEEEEEeeCCC
Q 029673 144 --TYDVNPSFVLMDID-GLRVVVYVYELIDG-EVKVDKIDFKKTST 185 (190)
Q Consensus 144 --~~~~~~~y~ll~~~-~~~~~~~~~~i~~~-~~~~~~~~~~~~~~ 185 (190)
-++...+|+.+++- ...+..+++.-+++ .+...++++.|-..
T Consensus 376 s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~~ 421 (427)
T PLN02533 376 SLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSLLT 421 (427)
T ss_pred eeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEeccC
Confidence 12346688999875 45788999886655 45677887776543
No 56
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.39 E-value=2.2e-12 Score=100.63 Aligned_cols=127 Identities=22% Similarity=0.268 Sum_probs=78.3
Q ss_pred EEEecCCCCCCCCChHHHHHhhhc--------CCCccEEEEcCCCCC-----HHHHHHHhhhC-------CcEEEecCCc
Q 029673 5 LALGDLHIPHRAADLPAKFKSMLV--------PGKIQHIVCTGNLCI-----KEVHDYLKIIC-------PDLHIIRGEY 64 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~--------~~~~D~vi~~GDl~~-----~~~~~~l~~l~-------~~~~~v~GNH 64 (190)
+++||+|++.. .+.+.+ +.+. ..+.|.++++||++| .++++.|.++. .++++++|||
T Consensus 1 ~vi~DIHG~~~--~l~~ll-~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNH 77 (208)
T cd07425 1 VAIGDLHGDLD--AFREIL-KGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNH 77 (208)
T ss_pred CEEeCccCCHH--HHHHHH-HHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCC
Confidence 47999998532 232322 2222 347899999999999 45677666652 4799999999
Q ss_pred ccccC-----C--C------------------C-----------ceEEEECCEEEEEeecCccCCC-----CCH------
Q 029673 65 DEETR-----Y--P------------------E-----------TKTLTIGQFKLGLCHGHQVIPW-----GDL------ 97 (190)
Q Consensus 65 D~~~~-----~--p------------------~-----------~~~~~~~~~~i~~~Hg~~~~~~-----~~~------ 97 (190)
|...- . + . ......+ +++++|+.+...| ...
T Consensus 78 E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~--~~~fvHag~~~~w~r~y~~~~~~~~~~ 155 (208)
T cd07425 78 ELMNLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN--DTLFVHGGLGPLWYRGYSKETSDKECA 155 (208)
T ss_pred cHHHHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC--CEEEEeCCcHHHHhhHhhhhhhhccch
Confidence 98741 0 0 0 0122233 4778999753222 000
Q ss_pred -HHHHHHhhcCCccEEEECcccCcceE--EecC-eEEEccCCC
Q 029673 98 -DSLAMLQRQLDVDILVTGHTHQFTAY--KHEG-GVVINPGSA 136 (190)
Q Consensus 98 -~~l~~~~~~~~~~~~i~GH~H~~~~~--~~~~-~~~inpGs~ 136 (190)
..+...++..+.+++++||||.+... ..++ ..-|.+|..
T Consensus 156 ~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g~~ 198 (208)
T cd07425 156 AAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVGMS 198 (208)
T ss_pred HHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCCcc
Confidence 13445667778999999999998654 3343 344555543
No 57
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.36 E-value=1.6e-11 Score=97.98 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=88.0
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcC---------CCccEEEEcCCCCC-----HHHHHHHhhh--CCcEEEecCCcc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVP---------GKIQHIVCTGNLCI-----KEVHDYLKII--CPDLHIIRGEYD 65 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~---------~~~D~vi~~GDl~~-----~~~~~~l~~l--~~~~~~v~GNHD 65 (190)
||+++|||+|+... .+.+ +.+.+.. .+-|.++++||++| .++++++.++ ..++++|.||||
T Consensus 1 ~~~~vIGDIHG~~~--~L~~-lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE 77 (245)
T PRK13625 1 MKYDIIGDIHGCYQ--EFQA-LTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHC 77 (245)
T ss_pred CceEEEEECccCHH--HHHH-HHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccH
Confidence 79999999998532 2333 2332221 13579999999999 4677777665 257999999999
Q ss_pred ccc-----------------------CCCC-----------------ceEEEECCEEEEEeecCccCCC-C-CHHHHHH-
Q 029673 66 EET-----------------------RYPE-----------------TKTLTIGQFKLGLCHGHQVIPW-G-DLDSLAM- 102 (190)
Q Consensus 66 ~~~-----------------------~~p~-----------------~~~~~~~~~~i~~~Hg~~~~~~-~-~~~~l~~- 102 (190)
... ..+. ......++.+++++|+...... . ..+....
T Consensus 78 ~~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~~~~~~~~~~~~ 157 (245)
T PRK13625 78 NKLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDYIGRQDKKVQTF 157 (245)
T ss_pred HHHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHhcccchhhhhhH
Confidence 642 0000 0112234457889998642110 0 1000100
Q ss_pred --------------------Hhh-cCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCC
Q 029673 103 --------------------LQR-QLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGL 159 (190)
Q Consensus 103 --------------------~~~-~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~ 159 (190)
+.+ ..+...+++|||-.......++...|.+|++.. .....+++.++
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~vV~GHtp~~~~~~~~~~i~IDtGa~~g----------G~Ltal~l~~~ 225 (245)
T PRK13625 158 VLYGDITGEKHPDGSPVRRDWAKEYKGTAWIVYGHTPVKEPRFVNHTVNIDTGCVFG----------GRLTALRYPEM 225 (245)
T ss_pred HhhccccCCcCCCCCeeeeccchhcCCCcEEEECCCCCccceecCCeEEEECcCccC----------CEEEEEECCCC
Confidence 111 124568999999887766667788899998542 45666777665
No 58
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.33 E-value=3e-11 Score=97.80 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=48.4
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEecCCcccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKIICPDLHIIRGEYDEE 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
|++++|||+|++.. .+.+.+.++--..++|.++++||+++ .++++.+.++..++++|.||||..
T Consensus 1 M~~~vIGDIHG~~~--~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD~~ 69 (275)
T PRK00166 1 MATYAIGDIQGCYD--ELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHDLH 69 (275)
T ss_pred CcEEEEEccCCCHH--HHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChhHH
Confidence 69999999998532 33333333211347899999999999 477888888876799999999985
No 59
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=99.26 E-value=1.8e-10 Score=98.51 Aligned_cols=179 Identities=18% Similarity=0.198 Sum_probs=111.5
Q ss_pred eEEEEEecCCCCCCCCC------hHHHHHhh---hcCCCccEEEEcCCCCC-----H----HHHHHHhh-----------
Q 029673 2 VLVLALGDLHIPHRAAD------LPAKFKSM---LVPGKIQHIVCTGNLCI-----K----EVHDYLKI----------- 52 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~------~~~~l~~~---~~~~~~D~vi~~GDl~~-----~----~~~~~l~~----------- 52 (190)
|||++.+|.|++..... -...|.++ .+++++|+|+..|||+. + .+++.|++
T Consensus 14 irILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le 93 (646)
T KOG2310|consen 14 IRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLE 93 (646)
T ss_pred eEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeE
Confidence 89999999998765321 12234444 46889999999999997 1 23343332
Q ss_pred -------------------------hCCcEEEecCCcccccCC------------------------------CC-----
Q 029673 53 -------------------------ICPDLHIIRGEYDEETRY------------------------------PE----- 72 (190)
Q Consensus 53 -------------------------l~~~~~~v~GNHD~~~~~------------------------------p~----- 72 (190)
++.|++-+-||||++.+. |.
T Consensus 94 ~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLlqKG 173 (646)
T KOG2310|consen 94 ILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILLQKG 173 (646)
T ss_pred EecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeeeccC
Confidence 125889999999999621 00
Q ss_pred -----------------------c-eEE------EECCEEEEEeecCccCCC---CCHHHHHHHhhcCCccEEEECcccC
Q 029673 73 -----------------------T-KTL------TIGQFKLGLCHGHQVIPW---GDLDSLAMLQRQLDVDILVTGHTHQ 119 (190)
Q Consensus 73 -----------------------~-~~~------~~~~~~i~~~Hg~~~~~~---~~~~~l~~~~~~~~~~~~i~GH~H~ 119 (190)
. ..+ +-+=++++++|....... .-++.|.. .=.|++|.||-|.
T Consensus 174 ~tklALYGLg~irDeRL~R~Fk~~~V~f~rPe~~e~dWFNllvlHQNr~~h~~tn~lpE~flp----~F~DlviWGHEHE 249 (646)
T KOG2310|consen 174 STKLALYGLGSIRDERLYRMFKNGKVTFLRPEEYEDDWFNLLVLHQNRSKHRPTNFLPEQFLP----DFLDLVIWGHEHE 249 (646)
T ss_pred ceeEEEeeccccchHHHHHHHHhCceEEecCccccccceeeEEEeecccCCCCcccCcHhHhh----hhhhheeeccccc
Confidence 0 000 011147888887553211 11333321 1247899999998
Q ss_pred cceEE----ecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCCeEEEEEEEeeC-CeEEEEEEEEeeCC
Q 029673 120 FTAYK----HEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVVVYVYELID-GEVKVDKIDFKKTS 184 (190)
Q Consensus 120 ~~~~~----~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~ 184 (190)
..+.. ..+-.++.|||.-..-....+..+....|+++.+++...+-+++.+ .+|...++.+..-+
T Consensus 250 C~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~d~~ 319 (646)
T KOG2310|consen 250 CKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLADHP 319 (646)
T ss_pred cccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceecceeeeeeEecccC
Confidence 65532 3456778999965431122344566778999998888888888864 45666677665443
No 60
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.24 E-value=5.4e-10 Score=91.11 Aligned_cols=70 Identities=16% Similarity=-0.023 Sum_probs=48.4
Q ss_pred HhhcCCccEEEECcccCcceE-EecC-eEEEccCCCcCCCCCCCCCCCCcEEEEEEeCCeEE-EEEEEeeCCeE
Q 029673 103 LQRQLDVDILVTGHTHQFTAY-KHEG-GVVINPGSATGAFSSITYDVNPSFVLMDIDGLRVV-VYVYELIDGEV 173 (190)
Q Consensus 103 ~~~~~~~~~~i~GH~H~~~~~-~~~~-~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~~~~-~~~~~i~~~~~ 173 (190)
+.....++.++|||-|..... ...+ +.+...|..|.--. ...+..+.--++|++.+.-+ -+|+++++...
T Consensus 294 L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggY-g~~gw~Rr~Rv~e~d~~~~~IkTWKRl~d~~~ 366 (379)
T KOG1432|consen 294 LVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGY-GIGGWERRARVFELDLNKDRIKTWKRLDDKPL 366 (379)
T ss_pred HHhccCcceEEeccccccceecccCCeEEEEecCCCccCCc-CcCCcccceEEEEccccccccceeeecCCCCc
Confidence 444678999999999997544 4455 66777888876421 23557788889999987665 45666665543
No 61
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=99.24 E-value=9.1e-11 Score=99.53 Aligned_cols=167 Identities=21% Similarity=0.264 Sum_probs=105.2
Q ss_pred eEEEEEecCCCCCCC--CChHHHHHhhhc-----CCCccEEEEcCCCCC-----------------HHHHHH----Hhhh
Q 029673 2 VLVLALGDLHIPHRA--ADLPAKFKSMLV-----PGKIQHIVCTGNLCI-----------------KEVHDY----LKII 53 (190)
Q Consensus 2 mri~~iSD~H~~~~~--~~~~~~l~~~~~-----~~~~D~vi~~GDl~~-----------------~~~~~~----l~~l 53 (190)
.+++++||+|.+... ......+.++++ ..++..++++||++| .+-++. |.+.
T Consensus 226 v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~v 305 (481)
T COG1311 226 VYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQV 305 (481)
T ss_pred eEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhC
Confidence 468999999975431 011234555552 245689999999998 122333 3444
Q ss_pred C--CcEEEecCCccccc-CCC---------------------CceEEEECCEEEEEeecCccC------CCC---C----
Q 029673 54 C--PDLHIIRGEYDEET-RYP---------------------ETKTLTIGQFKLGLCHGHQVI------PWG---D---- 96 (190)
Q Consensus 54 ~--~~~~~v~GNHD~~~-~~p---------------------~~~~~~~~~~~i~~~Hg~~~~------~~~---~---- 96 (190)
. ..+++.|||||... .+| ....++++|..+++.||.-.. |.. .
T Consensus 306 p~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~sidDii~~vP~~~~~~~~~a 385 (481)
T COG1311 306 PEHIKVFIMPGNHDAVRQALPQPHFPELIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGRSIDDIIKLVPGADYDSPLKA 385 (481)
T ss_pred CCCceEEEecCCCCccccccCCCCcchhhcccccccceEecCCCcEEEECCEEEEEecCCCHHHHHhhCCCCCccchHHH
Confidence 3 57899999999974 111 234678899999999985421 110 0
Q ss_pred ---------------------HHHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEE
Q 029673 97 ---------------------LDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMD 155 (190)
Q Consensus 97 ---------------------~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~ 155 (190)
++.-..++-..-+|++.+||+|........|+..+|.|++-.. ...--++.
T Consensus 386 me~lLk~rHlaPtygg~~p~aP~~kD~lVIeevPDv~~~Ghvh~~g~~~y~gv~~vns~T~q~q--------Tefqk~vn 457 (481)
T COG1311 386 MEELLKRRHLAPTYGGTLPIAPETKDYLVIEEVPDVFHTGHVHKFGTGVYEGVNLVNSGTWQEQ--------TEFQKMVN 457 (481)
T ss_pred HHHHHHhcccCCCCCCccccccCCcCceeeccCCcEEEEccccccceeEEeccceEEeeeecch--------hccceEEE
Confidence 0110112223468999999999999988888999999988753 12223455
Q ss_pred EeCCeEEEEEEEeeCCeEEEE
Q 029673 156 IDGLRVVVYVYELIDGEVKVD 176 (190)
Q Consensus 156 ~~~~~~~~~~~~i~~~~~~~~ 176 (190)
++....++.+++++..+++++
T Consensus 458 i~p~~~~v~vv~~~~~~v~~~ 478 (481)
T COG1311 458 INPTPGNVPVVDFDSRSVKVL 478 (481)
T ss_pred ecCcccceeEEecccccceec
Confidence 555555666666665444443
No 62
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.24 E-value=7.8e-10 Score=93.06 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=72.4
Q ss_pred CEEEEEeecCccCCC--C-CH---HHHHHHhhcCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCC--------CC
Q 029673 80 QFKLGLCHGHQVIPW--G-DL---DSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSI--------TY 145 (190)
Q Consensus 80 ~~~i~~~Hg~~~~~~--~-~~---~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~--------~~ 145 (190)
.++|++-|.+.+... . +. ..+..++++++++++++||-|.......+++.++..|+-+..+... -.
T Consensus 214 ~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~ 293 (394)
T PTZ00422 214 DYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVLTDEGTAHINCGSGGNSGRKSIMKNSKSLFY 293 (394)
T ss_pred CeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEecCCCceEEEeCccccccCCCCCCCCCccee
Confidence 567888887666421 1 22 2455688899999999999999877777889999999876543100 01
Q ss_pred CCCCcEEEEEEeCCeEEEEEEE-eeCCeEEEEEEEEeeC
Q 029673 146 DVNPSFVLMDIDGLRVVVYVYE-LIDGEVKVDKIDFKKT 183 (190)
Q Consensus 146 ~~~~~y~ll~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~ 183 (190)
...++|+.++++.+++++++++ ..+..+-...+...++
T Consensus 294 ~~~~GF~~~~l~~~~l~~~fid~~~GkvL~~~~~~~~~~ 332 (394)
T PTZ00422 294 SEDIGFCIHELNAEGMVTKFVSGNTGEVLYTHKQPLKKR 332 (394)
T ss_pred cCCCCEEEEEEecCEEEEEEEeCCCCcEEEEeeecccch
Confidence 2457899999999999999997 4454444334444333
No 63
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.24 E-value=4.2e-11 Score=97.33 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=46.7
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-------HHHHHHHhhhC--CcEEEecCCccccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-------KEVHDYLKIIC--PDLHIIRGEYDEET 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~~l~--~~~~~v~GNHD~~~ 68 (190)
.||+++||+|.........+.+.++ ..+.+|.|+++||+++ ..+.+.|+++. .++++|.||||...
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i-~~~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~ 119 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAI-ANELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAPLGVFAVLGNHDYGV 119 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHH-HhcCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhccCCEEEEeccccccc
Confidence 4799999999854332222333333 4566799999999998 23456666664 36999999999985
No 64
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.17 E-value=2.1e-10 Score=88.05 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=65.8
Q ss_pred HHhhhcCCCccEEEEcCCCCC-------HHHHHHHhh---h-----CCcEEEecCCcccccC--CCCce-EEEE-CCEEE
Q 029673 23 FKSMLVPGKIQHIVCTGNLCI-------KEVHDYLKI---I-----CPDLHIIRGEYDEETR--YPETK-TLTI-GQFKL 83 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~-------~~~~~~l~~---l-----~~~~~~v~GNHD~~~~--~p~~~-~~~~-~~~~i 83 (190)
+..+++..+||.|+++||++| .+..+.+++ + ..++++|+||||...+ .+... +... .-+ |
T Consensus 34 ~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F-i 112 (195)
T cd08166 34 YHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYF-I 112 (195)
T ss_pred HHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhh-e
Confidence 444556789999999999999 223343333 2 1478999999999742 11110 0000 111 8
Q ss_pred EEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEecCe
Q 029673 84 GLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGG 128 (190)
Q Consensus 84 ~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~~ 128 (190)
++.|-+.... .++ .+.....+.+++++++||.|..........
T Consensus 113 ~lsH~P~~~~-~~~-~~~~~~~~~~p~~Ifs~H~H~s~~~~~~~~ 155 (195)
T cd08166 113 MLSHVPLLAE-GGQ-ALKHVVTDLDPDLIFSAHRHKSSIFMYDRL 155 (195)
T ss_pred eeeccccccc-ccH-HHHHHHHhcCceEEEEcCccceeeEEeecc
Confidence 8888655432 222 344566788999999999999887765443
No 65
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.17 E-value=1.5e-09 Score=86.58 Aligned_cols=136 Identities=16% Similarity=0.221 Sum_probs=82.3
Q ss_pred eEEEEEecCCCCCC----CCCh--HHHHHhhhcCCCcc-EEEEcCCCCC----------HHHHHHHhhhCCcEEEecCCc
Q 029673 2 VLVLALGDLHIPHR----AADL--PAKFKSMLVPGKIQ-HIVCTGNLCI----------KEVHDYLKIICPDLHIIRGEY 64 (190)
Q Consensus 2 mri~~iSD~H~~~~----~~~~--~~~l~~~~~~~~~D-~vi~~GDl~~----------~~~~~~l~~l~~~~~~v~GNH 64 (190)
++|+++||+|+... ...+ .+.+.+.++++.+| .++.+||+++ ...++.|++++. .+++.|||
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g~-d~~~~GNH 79 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALGY-DAVTIGNH 79 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcCC-CEEeeccc
Confidence 48999999996421 0122 22333334556677 7789999998 134566666654 45678999
Q ss_pred ccccC------------CC-------------------CceEEEECCEEEEEeecCc-cC-----C-------CCC----
Q 029673 65 DEETR------------YP-------------------ETKTLTIGQFKLGLCHGHQ-VI-----P-------WGD---- 96 (190)
Q Consensus 65 D~~~~------------~p-------------------~~~~~~~~~~~i~~~Hg~~-~~-----~-------~~~---- 96 (190)
|.... +| ...+++.+|.+|.++=-.. .. + ..+
T Consensus 80 e~d~g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (252)
T cd00845 80 EFDYGLDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFEDLAEA 159 (252)
T ss_pred cccccHHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcccCceecCHHHH
Confidence 98741 11 1235677888876553110 00 0 000
Q ss_pred ----------------------HHHHHHHhhc-CCccEEEECcccCcceE--EecCeEEEccCCCcC
Q 029673 97 ----------------------LDSLAMLQRQ-LDVDILVTGHTHQFTAY--KHEGGVVINPGSATG 138 (190)
Q Consensus 97 ----------------------~~~l~~~~~~-~~~~~~i~GH~H~~~~~--~~~~~~~inpGs~~~ 138 (190)
.+.-..+++. .++|++++||+|..... ..+++.++.+|+-+.
T Consensus 160 ~~~~~~~~~~~~D~vIvl~H~g~~~~~~la~~~~giDlvlggH~H~~~~~~~~~~~~~v~~~g~~~~ 226 (252)
T cd00845 160 VAVAEELLAEGADVIILLSHLGLDDDEELAEEVPGIDVILGGHTHHLLEEPEVVNGTLIVQAGKYGK 226 (252)
T ss_pred HHHHHHHHhCCCCEEEEEeccCccchHHHHhcCCCccEEEcCCcCcccCCCcccCCEEEEeCChhHc
Confidence 0111223333 58999999999987543 567899999998774
No 66
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.14 E-value=3.8e-10 Score=84.38 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=83.0
Q ss_pred eEEEEEecCCCCCCCC-----------ChHHHHHhhh--cCCCccEEEEcCCCCC-------HHHHHHHhhhCCcEEEec
Q 029673 2 VLVLALGDLHIPHRAA-----------DLPAKFKSML--VPGKIQHIVCTGNLCI-------KEVHDYLKIICPDLHIIR 61 (190)
Q Consensus 2 mri~~iSD~H~~~~~~-----------~~~~~l~~~~--~~~~~D~vi~~GDl~~-------~~~~~~l~~l~~~~~~v~ 61 (190)
|+|..+||+|+....+ ...+++.+-+ .-..-|.|++.||+.= .+-+.++..+++.-+.++
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~LPG~K~m~r 80 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDLPGTKYMIR 80 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhcCChhhEEEecccchhheechhhhhhhhhhhcCCCcEEEEe
Confidence 8999999999843211 2233444433 1246799999999973 233567777877789999
Q ss_pred CCcccccC--------CCCc---------------------------------------------------eEE-EECCE
Q 029673 62 GEYDEETR--------YPET---------------------------------------------------KTL-TIGQF 81 (190)
Q Consensus 62 GNHD~~~~--------~p~~---------------------------------------------------~~~-~~~~~ 81 (190)
||||.+.. +|.. ..+ .-...
T Consensus 81 GNHDYWw~s~skl~n~lp~~l~~~n~~f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~ 160 (230)
T COG1768 81 GNHDYWWSSISKLNNALPPILFYLNNGFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVSK 160 (230)
T ss_pred cCCccccchHHHHHhhcCchHhhhccceeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcCe
Confidence 99999951 1100 000 01123
Q ss_pred EEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcc
Q 029673 82 KLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFT 121 (190)
Q Consensus 82 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~ 121 (190)
-|+++|.+|+.+.+++..+.++++...++.+++||.|...
T Consensus 161 fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv~ 200 (230)
T COG1768 161 FIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGVP 200 (230)
T ss_pred EEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCCC
Confidence 5789999998877777788888888899999999999754
No 67
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.13 E-value=2.7e-09 Score=86.59 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=29.9
Q ss_pred HHhhc-CCccEEEECcccCcceE-EecCeEEEccCCCcC
Q 029673 102 MLQRQ-LDVDILVTGHTHQFTAY-KHEGGVVINPGSATG 138 (190)
Q Consensus 102 ~~~~~-~~~~~~i~GH~H~~~~~-~~~~~~~inpGs~~~ 138 (190)
++++. .++|++++||+|..... ..+++.++.+|+-+.
T Consensus 211 ~la~~~~~vD~IlgGHsH~~~~~~~~~~~~v~q~g~~g~ 249 (277)
T cd07410 211 ELAEEVPGIDAILTGHQHRRFPGPTVNGVPVVQPGNWGS 249 (277)
T ss_pred HHHhcCCCCcEEEeCCCccccccCCcCCEEEEcCChhhC
Confidence 34544 68999999999998765 568899999998774
No 68
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=99.13 E-value=4.5e-10 Score=88.05 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=66.7
Q ss_pred EEEEEecCCCCCCCC--------------ChHHHHHhhhcCCCccEEEEcCCCCC----------HHHHHHHhhhC-CcE
Q 029673 3 LVLALGDLHIPHRAA--------------DLPAKFKSMLVPGKIQHIVCTGNLCI----------KEVHDYLKIIC-PDL 57 (190)
Q Consensus 3 ri~~iSD~H~~~~~~--------------~~~~~l~~~~~~~~~D~vi~~GDl~~----------~~~~~~l~~l~-~~~ 57 (190)
+.+++||+|++.... ...+.+.+++.+.+|+.+|++||+.. .++...++.+. ..+
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~ev 100 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDEREV 100 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccCcE
Confidence 679999999864321 01223444667899999999999987 12222233222 259
Q ss_pred EEecCCcccccC--CCCc---eEEEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcce
Q 029673 58 HIIRGEYDEETR--YPET---KTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTA 122 (190)
Q Consensus 58 ~~v~GNHD~~~~--~p~~---~~~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~ 122 (190)
.+++||||.... +|.. ..-+..-..++++|||..... .+.. +|.||.|-...
T Consensus 101 i~i~GNHD~~i~~~~~~~~v~v~~~~~i~~~~~~HGh~~~~~------------~~~~-~I~GHeHPav~ 157 (235)
T COG1407 101 IIIRGNHDNGIEEILPGFNVEVVDELEIGGLLFRHGHKEPEP------------EGLE-VIIGHEHPAVR 157 (235)
T ss_pred EEEeccCCCccccccccCCceeeeeEEecCEEEEeCCCCCcc------------ccce-EEcccCCccEE
Confidence 999999999863 2322 111222345889999865321 1222 79999996543
No 69
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.12 E-value=6.4e-10 Score=87.17 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=81.5
Q ss_pred EEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhhC---CcEEEecCCcccccC-----CC
Q 029673 5 LALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKIIC---PDLHIIRGEYDEETR-----YP 71 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~---~~~~~v~GNHD~~~~-----~p 71 (190)
.++||+|++.. .+. ++.+.+...+.|.++++||+++ .++++.+.++. .+++++.||||.... ..
T Consensus 1 ~~igDiHg~~~--~l~-~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~~~~~~~~~~~ 77 (225)
T cd00144 1 YVIGDIHGCLD--DLL-RLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHEDMLLNFLYGFY 77 (225)
T ss_pred CEEeCCCCCHH--HHH-HHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchhhhhhhhcCCc
Confidence 37999998421 232 3333334467999999999998 46777777763 379999999998730 00
Q ss_pred ------------------------------CceEEEECCEEEEEeecCccCCCCC-------------------------
Q 029673 72 ------------------------------ETKTLTIGQFKLGLCHGHQVIPWGD------------------------- 96 (190)
Q Consensus 72 ------------------------------~~~~~~~~~~~i~~~Hg~~~~~~~~------------------------- 96 (190)
......++..+++++|+........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~~~~~~~~~~~~lw~r~~~~~ 157 (225)
T cd00144 78 DEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIKEEPEDQLPEDLLWSDPLELP 157 (225)
T ss_pred chhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhhcCcccccceeeeecCCCCCC
Confidence 0112234445899999865311100
Q ss_pred -----------HHHHHHHhhcCCccEEEECcccCcceE---EecCeEEEccCCCc
Q 029673 97 -----------LDSLAMLQRQLDVDILVTGHTHQFTAY---KHEGGVVINPGSAT 137 (190)
Q Consensus 97 -----------~~~l~~~~~~~~~~~~i~GH~H~~~~~---~~~~~~~inpGs~~ 137 (190)
+..........+.+.+|+||+...... ..++...|-+|+.-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~ 212 (225)
T cd00144 158 GGFGSSRRGGGPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNY 212 (225)
T ss_pred CCCcCCCCCCCHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcc
Confidence 011122334557889999999987665 34566777777644
No 70
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.07 E-value=1.5e-08 Score=81.45 Aligned_cols=136 Identities=15% Similarity=0.211 Sum_probs=84.0
Q ss_pred eEEEEEecCCCCCCC-----CCh--HHHHHhhhcCCCcc-EEEEcCCCCCH----------HHHHHHhhhCCcEEEecCC
Q 029673 2 VLVLALGDLHIPHRA-----ADL--PAKFKSMLVPGKIQ-HIVCTGNLCIK----------EVHDYLKIICPDLHIIRGE 63 (190)
Q Consensus 2 mri~~iSD~H~~~~~-----~~~--~~~l~~~~~~~~~D-~vi~~GDl~~~----------~~~~~l~~l~~~~~~v~GN 63 (190)
.+|++++|+|.-... -.+ ...+.+.++++++| .++.+||+++. ..++.|+.++. -++++||
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~-d~~~~GN 79 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGV-DLACFGN 79 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCC-cEEeecc
Confidence 479999999931111 011 12233333456677 99999999972 34566666653 4678999
Q ss_pred cccccC-------------------------------CCCceEEEECCEEEEEeec--CccC-------CC---CCH---
Q 029673 64 YDEETR-------------------------------YPETKTLTIGQFKLGLCHG--HQVI-------PW---GDL--- 97 (190)
Q Consensus 64 HD~~~~-------------------------------~p~~~~~~~~~~~i~~~Hg--~~~~-------~~---~~~--- 97 (190)
||...+ ++...+++.+|.||.++== +... .. .++
T Consensus 80 Hefd~g~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~ 159 (257)
T cd07406 80 HEFDFGEDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDYVET 159 (257)
T ss_pred cccccCHHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCCcceEcCHHHH
Confidence 998741 1233566778888765421 0000 00 000
Q ss_pred ------------------------HHHHHHhhc-CCccEEEECcccCcceEEecCeEEEccCCCcC
Q 029673 98 ------------------------DSLAMLQRQ-LDVDILVTGHTHQFTAYKHEGGVVINPGSATG 138 (190)
Q Consensus 98 ------------------------~~l~~~~~~-~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~ 138 (190)
+.-.++++. .++|+++.||+|.......+++.++.+|+-+.
T Consensus 160 ~~~~v~~~~~~~~D~iVvl~H~g~~~d~~la~~~~~iD~IlgGH~H~~~~~~~~~t~vv~~g~~g~ 225 (257)
T cd07406 160 ARELVDELREQGADLIIALTHMRLPNDKRLAREVPEIDLILGGHDHEYILVQVGGTPIVKSGSDFR 225 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCchhhHHHHHhCCCCceEEecccceeEeeeECCEEEEeCCcCcc
Confidence 011123333 58999999999998877888999999998774
No 71
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=99.06 E-value=2.5e-08 Score=79.89 Aligned_cols=149 Identities=16% Similarity=0.229 Sum_probs=95.6
Q ss_pred EEEEEecCCCCCCCCC--hHHHHHhhhc-----------CCCccEEEEcCCCCCH-----H---------------HH--
Q 029673 3 LVLALGDLHIPHRAAD--LPAKFKSMLV-----------PGKIQHIVCTGNLCIK-----E---------------VH-- 47 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~--~~~~l~~~~~-----------~~~~D~vi~~GDl~~~-----~---------------~~-- 47 (190)
+|+++||+|.+..... -.+.|.+++. ..++-.+|++||.++. + ..
T Consensus 1 ~i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T cd07387 1 YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEA 80 (257)
T ss_pred CEEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHH
Confidence 4899999998654321 1245666662 2345689999999981 1 11
Q ss_pred -----HHHhhhC--CcEEEecCCcccccC-CC----------------------CceEEEECCEEEEEeecCcc------
Q 029673 48 -----DYLKIIC--PDLHIIRGEYDEETR-YP----------------------ETKTLTIGQFKLGLCHGHQV------ 91 (190)
Q Consensus 48 -----~~l~~l~--~~~~~v~GNHD~~~~-~p----------------------~~~~~~~~~~~i~~~Hg~~~------ 91 (190)
+.|.++. .++.+.|||||.... +| ....++++|.+|+.+||...
T Consensus 81 ~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ky 160 (257)
T cd07387 81 VKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKY 160 (257)
T ss_pred HHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHHh
Confidence 2334443 589999999999741 11 12457889999999999653
Q ss_pred CCCCCH-HHHHH-------------------------HhhcCCccEEEECcccCcceEEec-----CeEEEccCCCcCCC
Q 029673 92 IPWGDL-DSLAM-------------------------LQRQLDVDILVTGHTHQFTAYKHE-----GGVVINPGSATGAF 140 (190)
Q Consensus 92 ~~~~~~-~~l~~-------------------------~~~~~~~~~~i~GH~H~~~~~~~~-----~~~~inpGs~~~~~ 140 (190)
.+...+ +.++. +.-+.-++++++||.|........ .++.|+.+++..
T Consensus 161 ~~~~~~l~~me~~L~wrHlaPTaPDTL~~yP~~~~Dpfvi~~~PhVyf~Gnq~~f~t~~~~~~~~~~v~lv~vP~Fs~-- 238 (257)
T cd07387 161 SSLESRLDILERTLKWRHIAPTAPDTLWCYPFTDRDPFILEECPHVYFAGNQPKFGTKLVEGEEGQRVLLVCVPSFSK-- 238 (257)
T ss_pred CCCCCHHHHHHHHHHhcccCCCCCCccccccCCCCCceeecCCCCEEEeCCCcceeeeEEEcCCCCeEEEEEeCCcCc--
Confidence 111111 11111 111235789999999998765543 378999988875
Q ss_pred CCCCCCCCCcEEEEEEeCCe
Q 029673 141 SSITYDVNPSFVLMDIDGLR 160 (190)
Q Consensus 141 ~~~~~~~~~~y~ll~~~~~~ 160 (190)
.++..+++++.-.
T Consensus 239 -------t~~~vlvdl~tLe 251 (257)
T cd07387 239 -------TGTAVLVNLRTLE 251 (257)
T ss_pred -------CCEEEEEECCcCc
Confidence 4788888877543
No 72
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=99.05 E-value=5.8e-09 Score=83.82 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=42.0
Q ss_pred eEEEEEecCCCCCCC-----CChHHHHHhh---hcCCCccEEEEcCCCCC----------HHHHHHHhhhCCcEEEecCC
Q 029673 2 VLVLALGDLHIPHRA-----ADLPAKFKSM---LVPGKIQHIVCTGNLCI----------KEVHDYLKIICPDLHIIRGE 63 (190)
Q Consensus 2 mri~~iSD~H~~~~~-----~~~~~~l~~~---~~~~~~D~vi~~GDl~~----------~~~~~~l~~l~~~~~~v~GN 63 (190)
++|+++||+|+.... ..+ .++..+ +++++.+.++.+||+++ ....+.++.++..+ .+.||
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~-~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~d~-~~~GN 78 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGY-AKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGYDA-VTPGN 78 (257)
T ss_pred CEEEEeccCcccccCCCCccccH-HHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCCcE-Ecccc
Confidence 589999999973211 112 223333 33336789999999998 23445666665444 56799
Q ss_pred ccccc
Q 029673 64 YDEET 68 (190)
Q Consensus 64 HD~~~ 68 (190)
||+..
T Consensus 79 Hefd~ 83 (257)
T cd07408 79 HEFDY 83 (257)
T ss_pred ccccC
Confidence 99874
No 73
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.04 E-value=7.6e-10 Score=89.30 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=48.4
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEecCCcccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKIICPDLHIIRGEYDEE 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
|++.+|||+|++.. .+.+.+.++-...+.|.++++||+++ .++++.+.++...++.|.||||..
T Consensus 1 m~~YvIGDIHGc~d--aL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD~~ 69 (279)
T TIGR00668 1 MATYLIGDLHGCYD--ELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHDLH 69 (279)
T ss_pred CcEEEEEcccCCHH--HHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhHHH
Confidence 67999999999542 34343333311346899999999999 478888888876688999999975
No 74
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.5e-09 Score=82.93 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=108.5
Q ss_pred eEEEEEecCCCCCCC-CChH-HHHHhhhcCCCccEEEEcCCCCC---------HHHHHHHhhh------CCcEEEecCCc
Q 029673 2 VLVLALGDLHIPHRA-ADLP-AKFKSMLVPGKIQHIVCTGNLCI---------KEVHDYLKII------CPDLHIIRGEY 64 (190)
Q Consensus 2 mri~~iSD~H~~~~~-~~~~-~~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~l------~~~~~~v~GNH 64 (190)
.++++++|.=-.... .+.. .++-++-++.++|+|+.+||=+= +..-+.++++ .+|.|.|.|||
T Consensus 44 lsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vlGNH 123 (336)
T KOG2679|consen 44 LSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVLGNH 123 (336)
T ss_pred eEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccchhhhccCc
Confidence 579999998632111 1111 12333346689999999999762 3334445543 36899999999
Q ss_pred ccccCC-----------------C----------------------------Cc-------------------------e
Q 029673 65 DEETRY-----------------P----------------------------ET-------------------------K 74 (190)
Q Consensus 65 D~~~~~-----------------p----------------------------~~-------------------------~ 74 (190)
|..... | .. .
T Consensus 124 DyrGnV~AQls~~l~~~d~RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L 203 (336)
T KOG2679|consen 124 DYRGNVEAQLSPVLRKIDKRWICPRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVAL 203 (336)
T ss_pred cccCchhhhhhHHHHhhccceecccHHhhcceeeeeeccccccchhhheecccccccccccCChHHHHHHHHHHHHHHHH
Confidence 998410 0 00 0
Q ss_pred EEEECCEEEEEeecCccCCC--CCH----HHHHHHhhcCCccEEEECcccCcceE-E-ecCeEEEccCCCcCCCCCCCC-
Q 029673 75 TLTIGQFKLGLCHGHQVIPW--GDL----DSLAMLQRQLDVDILVTGHTHQFTAY-K-HEGGVVINPGSATGAFSSITY- 145 (190)
Q Consensus 75 ~~~~~~~~i~~~Hg~~~~~~--~~~----~~l~~~~~~~~~~~~i~GH~H~~~~~-~-~~~~~~inpGs~~~~~~~~~~- 145 (190)
....+.++|++-|.+..... +.. +.|.-+++..++|+.++||-|..... . ..++-|+..|.-+.++.+.+-
T Consensus 204 ~~S~a~wkiVvGHh~i~S~~~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g~~~~ 283 (336)
T KOG2679|consen 204 KASRAKWKIVVGHHPIKSAGHHGPTKELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRGTDHN 283 (336)
T ss_pred HHhhcceEEEecccceehhhccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCCCccC
Confidence 01124577888776543221 122 34455778899999999999986433 3 467889988887776533111
Q ss_pred -C----------CCCcEEEEEEeCCeEEEEEEEeeCCe
Q 029673 146 -D----------VNPSFVLMDIDGLRVVVYVYELIDGE 172 (190)
Q Consensus 146 -~----------~~~~y~ll~~~~~~~~~~~~~i~~~~ 172 (190)
. +..+|+-+++.....++.+++..+..
T Consensus 284 ~~~~p~~lkF~YdgqGfmsv~is~~e~~vvfyD~~G~~ 321 (336)
T KOG2679|consen 284 PEVNPKELKFYYDGQGFMSVEISHSEARVVFYDVSGKV 321 (336)
T ss_pred CccChhheEEeeCCCceEEEEEecceeEEEEEeccCce
Confidence 1 34588888888888889999887754
No 75
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.96 E-value=6.5e-09 Score=83.57 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=29.6
Q ss_pred hcCCCccEEEEcCCCCC--H--------HHHHHHhhhC------CcEEEecCCcccc
Q 029673 27 LVPGKIQHIVCTGNLCI--K--------EVHDYLKIIC------PDLHIIRGEYDEE 67 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl~~--~--------~~~~~l~~l~------~~~~~v~GNHD~~ 67 (190)
....+||+|+++||+++ . +.++.+.++. .|++.|+||||..
T Consensus 41 ~~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig 97 (257)
T cd08163 41 QKQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG 97 (257)
T ss_pred HHhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC
Confidence 34578999999999998 1 1244444431 4789999999964
No 76
>PHA02239 putative protein phosphatase
Probab=98.95 E-value=1.4e-09 Score=86.34 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=44.2
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhc-CC-CccEEEEcCCCCC-----HHHHHHHhhh---CCcEEEecCCcccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLV-PG-KIQHIVCTGNLCI-----KEVHDYLKII---CPDLHIIRGEYDEE 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~-~~-~~D~vi~~GDl~~-----~~~~~~l~~l---~~~~~~v~GNHD~~ 67 (190)
||+++|||+|+.. ..+ +++.+.+. .. +.|.|+++||++| .++++.+.++ ..++++++||||..
T Consensus 1 m~~~~IsDIHG~~--~~l-~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEY--QKL-LTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCH--HHH-HHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 6999999999843 233 33334332 22 3699999999999 4566665443 34799999999985
No 77
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.90 E-value=9e-09 Score=78.97 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=56.9
Q ss_pred HHhhhcCCCccEEEEcCCCCC------HH---HHHHHhhh----------------------CCcEEEecCCcccccCCC
Q 029673 23 FKSMLVPGKIQHIVCTGNLCI------KE---VHDYLKII----------------------CPDLHIIRGEYDEETRYP 71 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~------~~---~~~~l~~l----------------------~~~~~~v~GNHD~~~~~p 71 (190)
+..+....+||.|+++||+++ .| -+.++.++ ..+++.|+||||....-+
T Consensus 36 ~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~~~~ 115 (193)
T cd08164 36 VSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGYGGE 115 (193)
T ss_pred HHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCCCCc
Confidence 333445679999999999998 12 12233221 146789999999975322
Q ss_pred C--ceEEEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccCcceEEe
Q 029673 72 E--TKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKH 125 (190)
Q Consensus 72 ~--~~~~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~ 125 (190)
. ..+-.....=|+++|.+.+. .....++++++|||+|...+...
T Consensus 116 ~~~~~i~RF~~~FilL~H~P~~~----------~~~~~~~dl~lSGHtHgGqi~~~ 161 (193)
T cd08164 116 VTEARIERFESLFILLTHVPLYK----------IFLEGKPGLILTGHDHEGCDYQH 161 (193)
T ss_pred cchHHhhheheeEEEEEccccee----------ccccCCCCEEEeCccCCCeEEEe
Confidence 1 11111111118999965432 11234789999999998776553
No 78
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=98.88 E-value=1.3e-08 Score=83.14 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=27.9
Q ss_pred CCccEEEEcCCCCC-------HH---------HHHHHhhh--CCcEEEecCCcccc
Q 029673 30 GKIQHIVCTGNLCI-------KE---------VHDYLKII--CPDLHIIRGEYDEE 67 (190)
Q Consensus 30 ~~~D~vi~~GDl~~-------~~---------~~~~l~~l--~~~~~~v~GNHD~~ 67 (190)
.++|+||++||++. .+ +.+.+++. ..|++.++||||..
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~ 122 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSY 122 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCC
Confidence 38999999999997 11 12234443 26899999999985
No 79
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=98.86 E-value=3.3e-09 Score=85.11 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=46.5
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEecCCccccc
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKIICPDLHIIRGEYDEET 68 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
+.+|||+|++.. .+.+.+.++-...+.|.++++||+++ .++++.+.++..+++.|.||||...
T Consensus 1 ~yvIGDIHG~~~--~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD~~l 68 (257)
T cd07422 1 TYAIGDIQGCYD--ELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHDLHL 68 (257)
T ss_pred CEEEECCCCCHH--HHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCchHHH
Confidence 468999999532 33333333211346899999999999 5788888888767999999999863
No 80
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.84 E-value=3.9e-07 Score=73.48 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=25.6
Q ss_pred CCccEEEECcccCcce---EEecCeEEEccCCCcC
Q 029673 107 LDVDILVTGHTHQFTA---YKHEGGVVINPGSATG 138 (190)
Q Consensus 107 ~~~~~~i~GH~H~~~~---~~~~~~~~inpGs~~~ 138 (190)
.++|+++.||+|.... ...+++.++.+|+-+.
T Consensus 206 ~~iDlilgGH~H~~~~~~~~~~~~t~v~~~g~~~~ 240 (264)
T cd07411 206 PGIDVILSGHTHERTPKPIIAGGGTLVVEAGSHGK 240 (264)
T ss_pred CCCcEEEeCcccccccCcccccCCEEEEEcCcccc
Confidence 5799999999997654 2357899999998774
No 81
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=98.83 E-value=3e-07 Score=74.52 Aligned_cols=63 Identities=24% Similarity=0.242 Sum_probs=44.5
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhh----CCcEEEecCCcccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKII----CPDLHIIRGEYDEE 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~~~~v~GNHD~~ 67 (190)
++++++||+|++.. ++.+.+ +.......+.++++||++| .|++..+..+ +..++.++||||..
T Consensus 28 ~~i~vvGDiHG~~~--~l~~ll-~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQFD--DLLRLF-DLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCHH--HHHHHH-HHcCCCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 57899999998421 232222 2233456899999999999 4666665544 24689999999996
No 82
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.81 E-value=3.5e-08 Score=79.44 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCccEEEECcccCcceEE
Q 029673 98 DSLAMLQRQLDVDILVTGHTHQFTAYK 124 (190)
Q Consensus 98 ~~l~~~~~~~~~~~~i~GH~H~~~~~~ 124 (190)
..+..+++..++++.++||.|..+...
T Consensus 206 ~~~~~ll~~lkPryhf~gH~H~~f~~~ 232 (262)
T cd00844 206 PAAEELLKHLKPRYWFSAHLHVKFAAL 232 (262)
T ss_pred HHHHHHHHHhCCCEEEEecCCccccee
Confidence 345677888999999999999866543
No 83
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.79 E-value=4.2e-07 Score=74.29 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=27.2
Q ss_pred CCccEEEECcccCcceE---EecCeEEEccCCCcC
Q 029673 107 LDVDILVTGHTHQFTAY---KHEGGVVINPGSATG 138 (190)
Q Consensus 107 ~~~~~~i~GH~H~~~~~---~~~~~~~inpGs~~~ 138 (190)
.++|+++.||+|..... ..++++++.||+-+.
T Consensus 228 ~~iD~IlgGHsH~~~~~~~~~~~~~~v~q~g~~g~ 262 (288)
T cd07412 228 PDVDVVFAGHTHQAYNCTVPAGNPRLVTQAGSYGK 262 (288)
T ss_pred CCCCEEEeCccCccccccccCcCCEEEEecChhhc
Confidence 58999999999998765 568899999998874
No 84
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.71 E-value=2.3e-06 Score=69.81 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=39.8
Q ss_pred eEEEEEecCCCCCCCC-----Ch--HHHHHhhhcC-----CCccEEEEcCCCCC----------HHHHHHHhhhCCcEEE
Q 029673 2 VLVLALGDLHIPHRAA-----DL--PAKFKSMLVP-----GKIQHIVCTGNLCI----------KEVHDYLKIICPDLHI 59 (190)
Q Consensus 2 mri~~iSD~H~~~~~~-----~~--~~~l~~~~~~-----~~~D~vi~~GDl~~----------~~~~~~l~~l~~~~~~ 59 (190)
++|++++|+|+.-... .+ ...+.+-+++ ...-.++.+||++. ....+.++.++.. ..
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~D-a~ 79 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYD-AM 79 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCCc-EE
Confidence 4799999999842111 11 1122222221 23447899999986 2345667776654 44
Q ss_pred ecCCccccc
Q 029673 60 IRGEYDEET 68 (190)
Q Consensus 60 v~GNHD~~~ 68 (190)
+.||||+..
T Consensus 80 ~~GNHEfD~ 88 (285)
T cd07405 80 AVGNHEFDN 88 (285)
T ss_pred eeccccccc
Confidence 669999985
No 85
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.69 E-value=9e-08 Score=70.83 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=68.3
Q ss_pred EEEecCCCCCCCCChHHHHHhhh-cCCCccEEEEcCCCCCH-----HHHHHHh---hhCCcEEEecCCcccccCCCCceE
Q 029673 5 LALGDLHIPHRAADLPAKFKSML-VPGKIQHIVCTGNLCIK-----EVHDYLK---IICPDLHIIRGEYDEETRYPETKT 75 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~-~~~~~D~vi~~GDl~~~-----~~~~~l~---~l~~~~~~v~GNHD~~~~~p~~~~ 75 (190)
++++|.|+... .+.+++.++. ++..+|++||+||++.. +..+++. +...|+|++-|||.
T Consensus 1 LV~G~~~G~l~--~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~ggn~~---------- 68 (150)
T cd07380 1 LVCGDVNGRLK--ALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGGNNP---------- 68 (150)
T ss_pred CeeecCCccHH--HHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCCccCCCCEEEECCCCC----------
Confidence 47899998321 2333344433 35679999999999972 2222222 23468999999996
Q ss_pred EEECCEEEEEeecCccCCC-------------CCHHHHHHHhhcCCccEEEECcccC
Q 029673 76 LTIGQFKLGLCHGHQVIPW-------------GDLDSLAMLQRQLDVDILVTGHTHQ 119 (190)
Q Consensus 76 ~~~~~~~i~~~Hg~~~~~~-------------~~~~~l~~~~~~~~~~~~i~GH~H~ 119 (190)
+.-|+++|..|.... .+...++++++..+++|.+|||.|.
T Consensus 69 ----~~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~ 121 (150)
T cd07380 69 ----GVDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGV 121 (150)
T ss_pred ----CCCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCc
Confidence 557999998775321 1345667888899999999999997
No 86
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.66 E-value=7.3e-07 Score=85.22 Aligned_cols=66 Identities=14% Similarity=0.043 Sum_probs=42.1
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEE-cCCCCC----------HHHHHHHhhhCCcEEEecCCccccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVC-TGNLCI----------KEVHDYLKIICPDLHIIRGEYDEET 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~-~GDl~~----------~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
++|+++||+|+..........+.+.++++++|.|++ +||+++ ...++.|+.++. -+++.||||+..
T Consensus 661 l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg~-d~~~~GNHEfd~ 737 (1163)
T PRK09419 661 LTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMGY-DASTFGNHEFDW 737 (1163)
T ss_pred EEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcCC-CEEEeccccccc
Confidence 689999999974211111222333334567888876 999998 134555666543 466999999753
No 87
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=98.60 E-value=9e-08 Score=75.36 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=42.8
Q ss_pred EEEecCCCCCCCCChHHHHHhhhcC--------CCccEEEEcCCCCC-----HHHHHHHhhhC--CcEEEecCCcccc
Q 029673 5 LALGDLHIPHRAADLPAKFKSMLVP--------GKIQHIVCTGNLCI-----KEVHDYLKIIC--PDLHIIRGEYDEE 67 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~--------~~~D~vi~~GDl~~-----~~~~~~l~~l~--~~~~~v~GNHD~~ 67 (190)
.+|||+|++.. .+.+ +.+.+.. ...|.++++||++| .++++.+.++. .++++|.||||..
T Consensus 2 ~vIGDIHG~~~--~L~~-lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 2 DFIGDIHGHAE--KLVV-LLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred EEEEeccCCHH--HHHH-HHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcHH
Confidence 58999999532 3333 3333321 14689999999999 57888887763 4689999999975
No 88
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=98.59 E-value=2.4e-06 Score=70.66 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=41.3
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhc-CCCccEEEEcCCCCC-----HHHHHHHhhh----CCcEEEecCCcccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLV-PGKIQHIVCTGNLCI-----KEVHDYLKII----CPDLHIIRGEYDEE 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~~~~v~GNHD~~ 67 (190)
.++.+++|+|+... ++.+. .+... ...-|.++++||++| .|++..+..+ ...++.++|||+..
T Consensus 60 ~~~~VvGDIHG~~~--dL~~l-l~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 60 EKITVCGDTHGQFY--DLLNI-FELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred ceeEEeecccCCHH--HHHHH-HHhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchH
Confidence 36899999998421 22222 22221 123368999999999 4666666554 24689999999975
No 89
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=98.56 E-value=9.8e-08 Score=77.51 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=42.8
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcC-----CCccEEEEcCCCCC-----HHHHHHHhhhCC-----cEEEecCCcccc
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVP-----GKIQHIVCTGNLCI-----KEVHDYLKIICP-----DLHIIRGEYDEE 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~-----~~~D~vi~~GDl~~-----~~~~~~l~~l~~-----~~~~v~GNHD~~ 67 (190)
++++|||+|+... .+.+.+..+... ...+.+|++||++| .+++++|.++.. ++++++||||..
T Consensus 3 ~iyaIGDIHG~~d--~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 3 VVICVGDIHGYIS--KLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred eEEEEEeccCCHH--HHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHH
Confidence 6899999998432 232322222111 24678999999999 567777776531 478999999965
No 90
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=98.53 E-value=3.7e-06 Score=69.25 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=43.5
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEecCCcccc
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKIIC----PDLHIIRGEYDEE 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
++++++|+|++.. ++.+. .+.......+.++++||++| .|++..|..+. ..++.++||||..
T Consensus 44 ~i~ViGDIHG~~~--dL~~l-~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFY--DLLKL-FEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHH--HHHHH-HHhcCCCCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 6899999998432 23222 22233445699999999999 46666665542 3689999999986
No 91
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=6.4e-06 Score=70.22 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=109.5
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhh-cCCCccEEEEcCCCCC----H-----HHHHHHhhhC--CcEEEecCCcccccC
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSML-VPGKIQHIVCTGNLCI----K-----EVHDYLKIIC--PDLHIIRGEYDEETR 69 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~-~~~~~D~vi~~GDl~~----~-----~~~~~l~~l~--~~~~~v~GNHD~~~~ 69 (190)
.++++++|+=........ .... ...++|+|++.|||.= . +-.+.++.+. .|..++.|||+....
T Consensus 148 ~~~~i~GDlG~~~~~~s~----~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNHE~d~~ 223 (452)
T KOG1378|consen 148 TRAAIFGDMGCTEPYTST----LRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNHEIDWP 223 (452)
T ss_pred eeEEEEccccccccccch----HhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEecccccccCC
Confidence 378888888643221111 2222 2347999999999972 1 2223344432 689999999998742
Q ss_pred -------------CC---------CceEEEEC-------------------------------------CEEEEEeecCc
Q 029673 70 -------------YP---------ETKTLTIG-------------------------------------QFKLGLCHGHQ 90 (190)
Q Consensus 70 -------------~p---------~~~~~~~~-------------------------------------~~~i~~~Hg~~ 90 (190)
.| ....++.+ .+-|++.|-+-
T Consensus 224 ~~~~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~ 303 (452)
T KOG1378|consen 224 PQPCFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPM 303 (452)
T ss_pred CcccccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHHHHHHHHHHhcccCCCeEEEEecccc
Confidence 12 11122222 34456666443
Q ss_pred cCCCC-----------CHHHHHHHhhcCCccEEEECcccCcceEE------e------------cCeEEEccCCCcCCCC
Q 029673 91 VIPWG-----------DLDSLAMLQRQLDVDILVTGHTHQFTAYK------H------------EGGVVINPGSATGAFS 141 (190)
Q Consensus 91 ~~~~~-----------~~~~l~~~~~~~~~~~~i~GH~H~~~~~~------~------------~~~~~inpGs~~~~~~ 141 (190)
+.... ..+.|+.++-++++|+++.||.|.+.... . .+..+|.+|+.|..-.
T Consensus 304 Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~ 383 (452)
T KOG1378|consen 304 YCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEH 383 (452)
T ss_pred eecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccc
Confidence 32111 12357788889999999999999864321 1 2356777888773210
Q ss_pred --CC---------CCCCCCcEEEEEEeCC-eEEEEEEEeeC-CeEEEEEEEEeeCCC
Q 029673 142 --SI---------TYDVNPSFVLMDIDGL-RVVVYVYELID-GEVKVDKIDFKKTST 185 (190)
Q Consensus 142 --~~---------~~~~~~~y~ll~~~~~-~~~~~~~~i~~-~~~~~~~~~~~~~~~ 185 (190)
+. -++..-+|++|++.+. ....++++..+ ...-..++++.|...
T Consensus 384 ~~~~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~ 440 (452)
T KOG1378|consen 384 LDPFSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYR 440 (452)
T ss_pred cCcccCCCCcccccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccC
Confidence 00 1456779999999875 46777777744 467788898888754
No 92
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.53 E-value=5.5e-06 Score=67.46 Aligned_cols=65 Identities=11% Similarity=0.238 Sum_probs=40.2
Q ss_pred eEEEEEecCCCCCCC----------------CChHHHHHhhh---cCCCccE-EEEcCCCCC----------HHHHHHHh
Q 029673 2 VLVLALGDLHIPHRA----------------ADLPAKFKSML---VPGKIQH-IVCTGNLCI----------KEVHDYLK 51 (190)
Q Consensus 2 mri~~iSD~H~~~~~----------------~~~~~~l~~~~---~~~~~D~-vi~~GDl~~----------~~~~~~l~ 51 (190)
.+|++++|+|+.-.. -.+ .++..++ +++.++. ++.+||++. ....+.++
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~-ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln 79 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGF-ARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMN 79 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCH-HHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHH
Confidence 479999999973211 012 2333333 3446664 555999997 23456677
Q ss_pred hhCCcEEEecCCccccc
Q 029673 52 IICPDLHIIRGEYDEET 68 (190)
Q Consensus 52 ~l~~~~~~v~GNHD~~~ 68 (190)
+++.. ..+.||||+..
T Consensus 80 ~~g~D-~~~lGNHefd~ 95 (281)
T cd07409 80 LLGYD-AMTLGNHEFDD 95 (281)
T ss_pred hcCCC-EEEeccccccC
Confidence 76654 45669999985
No 93
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=98.49 E-value=4.1e-06 Score=68.61 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=43.3
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEecCCccccc
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKIIC----PDLHIIRGEYDEET 68 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~~ 68 (190)
++.++||+|++.. ++.+.+ +.......+.++++||++| .|++..+..+. ..++.++||||...
T Consensus 51 ~i~viGDIHG~~~--~L~~l~-~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~ 122 (293)
T cd07414 51 PLKICGDIHGQYY--DLLRLF-EYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS 122 (293)
T ss_pred ceEEEEecCCCHH--HHHHHH-HhcCCCCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhh
Confidence 5789999998421 332222 2223445688999999999 46666665442 36899999999973
No 94
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=98.47 E-value=9e-06 Score=67.23 Aligned_cols=62 Identities=16% Similarity=0.039 Sum_probs=42.8
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEecCCcccc
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKIIC----PDLHIIRGEYDEE 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~ 67 (190)
++.++||+|++.. ++.+. .+.......+.++++||++| .|++..+..+. ..++.++||||..
T Consensus 60 ~i~vvGDIHG~~~--dL~~l-~~~~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQYF--DLLRL-FEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCHH--HHHHH-HHhcCCCCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchh
Confidence 5789999998421 23222 22223345678999999999 46666666542 3689999999986
No 95
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.45 E-value=9.9e-06 Score=71.91 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=40.0
Q ss_pred eEEEEEecCCCCCCCC-----ChHHHHHhhh---cC-----CCccEEEEcCCCCC----------HHHHHHHhhhCCcEE
Q 029673 2 VLVLALGDLHIPHRAA-----DLPAKFKSML---VP-----GKIQHIVCTGNLCI----------KEVHDYLKIICPDLH 58 (190)
Q Consensus 2 mri~~iSD~H~~~~~~-----~~~~~l~~~~---~~-----~~~D~vi~~GDl~~----------~~~~~~l~~l~~~~~ 58 (190)
+.|++++|+|+..... .+ .++..++ ++ ...-.++.+||++. ....+.++.++.. .
T Consensus 35 ltil~tnD~Hg~~~~~~~~~~G~-a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~D-a 112 (551)
T PRK09558 35 ITILHTNDHHGHFWRNEYGEYGL-AAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYD-A 112 (551)
T ss_pred EEEEEecccCCCccccccCCccH-HHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCCC-E
Confidence 5799999999843210 22 2222222 11 23457899999986 2345566666543 5
Q ss_pred EecCCccccc
Q 029673 59 IIRGEYDEET 68 (190)
Q Consensus 59 ~v~GNHD~~~ 68 (190)
.+.||||+..
T Consensus 113 ~tlGNHEFD~ 122 (551)
T PRK09558 113 MAVGNHEFDN 122 (551)
T ss_pred EcccccccCc
Confidence 5669999985
No 96
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.45 E-value=1.2e-05 Score=65.57 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=23.7
Q ss_pred Ccc-EEEECcccCcceEEe-cCeEEEccCCCcC
Q 029673 108 DVD-ILVTGHTHQFTAYKH-EGGVVINPGSATG 138 (190)
Q Consensus 108 ~~~-~~i~GH~H~~~~~~~-~~~~~inpGs~~~ 138 (190)
+.+ +++.||+|....... +++.++.||+.+.
T Consensus 218 ~id~~Ii~GHsH~~~~~~~~~~~~ivq~G~~g~ 250 (282)
T cd07407 218 DTPIQFLGGHSHVRDFTQYDSSSTGLESGRYLE 250 (282)
T ss_pred CCCEEEEeCCcccccceeccCcEEEEeccchhh
Confidence 456 799999997544333 6899999999884
No 97
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=98.43 E-value=1.2e-05 Score=65.71 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=42.2
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhh----CCcEEEecCCcccc
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKII----CPDLHIIRGEYDEE 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~~~~v~GNHD~~ 67 (190)
++.+++|+|++.. ++.+.| +.......+.++++||++| .+++..+..+ ...++.++||||..
T Consensus 43 ~i~vvGDIHG~~~--dL~~ll-~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFY--DLLELF-RVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHH--HHHHHH-HHcCCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchH
Confidence 5789999998421 232222 2223345678999999999 4566655544 24789999999985
No 98
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=98.40 E-value=2e-05 Score=64.80 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=42.6
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhh----CCcEEEecCCcccc
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKII----CPDLHIIRGEYDEE 67 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~~~~v~GNHD~~ 67 (190)
++.+++|+|++.. ++.+.+ +.......+.++++||++| .+++..+..+ ...++.++||||..
T Consensus 44 ~i~vvGDIHG~~~--~L~~l~-~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 44 PVNVCGDIHGQFY--DLQALF-KEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred CEEEEEeCCCCHH--HHHHHH-HhcCCCCCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchH
Confidence 5789999998421 232222 2223345678999999999 4666666544 24689999999986
No 99
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=98.37 E-value=1.7e-06 Score=71.57 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=42.4
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhh----CCcEEEecCCccccc
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKII----CPDLHIIRGEYDEET 68 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~~~~v~GNHD~~~ 68 (190)
++.+++|+|+... .+.+.+...-....-+.++++||++| .|++..|-.+ +..++.++|||+...
T Consensus 52 ~~~vvGDiHG~~~--dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~ 124 (321)
T cd07420 52 QVTICGDLHGKLD--DLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHI 124 (321)
T ss_pred CeEEEEeCCCCHH--HHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhh
Confidence 6899999998421 23332222101112368999999999 4677766554 246899999999973
No 100
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.36 E-value=1.5e-05 Score=76.36 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.3
Q ss_pred HHh-hcCCccEEEECcccCcce--------------EEecCeEEEccCCCcC
Q 029673 102 MLQ-RQLDVDILVTGHTHQFTA--------------YKHEGGVVINPGSATG 138 (190)
Q Consensus 102 ~~~-~~~~~~~~i~GH~H~~~~--------------~~~~~~~~inpGs~~~ 138 (190)
.++ +-.++|+++.||+|.... ...+++.++.||+.+.
T Consensus 261 ~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g~ 312 (1163)
T PRK09419 261 DLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWGK 312 (1163)
T ss_pred HHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhhc
Confidence 455 346899999999999654 3457888999998874
No 101
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=98.35 E-value=2.6e-05 Score=64.48 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=40.0
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCC--------CccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEecCCcc
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPG--------KIQHIVCTGNLCI-----KEVHDYLKIIC----PDLHIIRGEYD 65 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~--------~~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD 65 (190)
.+.++||+|++.. ++.+.| +.+... ....++++||++| .+++..+..+. ..++.++||||
T Consensus 49 ~~~viGDIHG~~~--~L~~ll-~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE 125 (311)
T cd07419 49 PIKIFGDIHGQFG--DLMRLF-DEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHE 125 (311)
T ss_pred CEEEEEeccCCHH--HHHHHH-HHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccc
Confidence 4788999998432 332222 222111 0135889999999 46777766542 47899999999
Q ss_pred cc
Q 029673 66 EE 67 (190)
Q Consensus 66 ~~ 67 (190)
..
T Consensus 126 ~~ 127 (311)
T cd07419 126 DR 127 (311)
T ss_pred hH
Confidence 75
No 102
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=98.31 E-value=3.1e-05 Score=63.46 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=40.2
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhh----CCcEEEecCCcccc
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKII----CPDLHIIRGEYDEE 67 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~~~~v~GNHD~~ 67 (190)
+.+++|+|++.. ++.+.+.+ +.....+.++++||++| .|++..+..+ ...++.++||||..
T Consensus 54 ~~ViGDIHG~~~--~L~~l~~~-~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQYY--DLLRIFEK-CGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCHH--HHHHHHHH-cCCCCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchH
Confidence 678999998432 33332322 23345568889999999 3555544432 24689999999975
No 103
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=98.21 E-value=3.5e-06 Score=70.94 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=41.1
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCC-ccEEEEcCCCCC-----HHHHHHHhhhC----CcEEEecCCccccc
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGK-IQHIVCTGNLCI-----KEVHDYLKIIC----PDLHIIRGEYDEET 68 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~-~D~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~~ 68 (190)
++.+++|+|+... .+.+.|.. ..... -+.++++||++| .|++..|..+. ..++.++||||...
T Consensus 67 ~i~VvGDIHG~~~--dL~~ll~~-~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~ 139 (377)
T cd07418 67 EVVVVGDVHGQLH--DVLFLLED-AGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKF 139 (377)
T ss_pred CEEEEEecCCCHH--HHHHHHHH-hCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeeccccc
Confidence 5789999998421 23332222 21122 346999999999 46666665542 46899999999863
No 104
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.20 E-value=5.8e-05 Score=68.01 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=26.6
Q ss_pred hhcCCccEEEECcccCcceE--------------EecCeEEEccCCCcC
Q 029673 104 QRQLDVDILVTGHTHQFTAY--------------KHEGGVVINPGSATG 138 (190)
Q Consensus 104 ~~~~~~~~~i~GH~H~~~~~--------------~~~~~~~inpGs~~~ 138 (190)
.+-.++|+++.||+|..... ..++++++.||+.+.
T Consensus 224 ~~v~gID~Il~GHsH~~~~~~~~~~~~~~d~~~~~i~g~~vvqaG~~G~ 272 (626)
T TIGR01390 224 TKVPGIDAVLFGHSHAVFPGKDFATIPGADITNGTINGVPAVMAGYWGN 272 (626)
T ss_pred hcCCCCCEEEcCCCCccCcCcccccCCcccccccccCCEEEEeCChhhc
Confidence 34468999999999996521 346788999998884
No 105
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.19 E-value=4.2e-05 Score=61.45 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=83.5
Q ss_pred EEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC------HHHHHHHhhhCCcEEEecCCcccccC-------
Q 029673 3 LVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI------KEVHDYLKIICPDLHIIRGEYDEETR------- 69 (190)
Q Consensus 3 ri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~~~~v~GNHD~~~~------- 69 (190)
||++++|+=+......+.+.+.++.++.++|+++..||... ++..+.|.+++..+..+ |||++...
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D~iTl-GNH~fD~gel~~~l~ 79 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGVDVITM-GNHTWDKKEILDFID 79 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCCCEEEe-cccccCcchHHHHHh
Confidence 69999999984332223334444445678999999999975 67788899887665555 99998742
Q ss_pred ----------CCC------ceEEEECCEEEEEee--cCccC-----CC-----------------------C-CHHHHHH
Q 029673 70 ----------YPE------TKTLTIGQFKLGLCH--GHQVI-----PW-----------------------G-DLDSLAM 102 (190)
Q Consensus 70 ----------~p~------~~~~~~~~~~i~~~H--g~~~~-----~~-----------------------~-~~~~l~~ 102 (190)
+|. ..+++.+|.+|.++- |..+. |. . +.+. ..
T Consensus 80 ~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~~~D~IIV~~H~g~tsEk-~a 158 (255)
T cd07382 80 EEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELKEEADIIFVDFHAEATSEK-IA 158 (255)
T ss_pred cCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhcCCCEEEEEECCCCCHHH-HH
Confidence 121 245567788876643 22111 10 0 1111 12
Q ss_pred HhhcC--CccEEEECcccCcceEE--e-cCeEEE-ccCCCcC
Q 029673 103 LQRQL--DVDILVTGHTHQFTAYK--H-EGGVVI-NPGSATG 138 (190)
Q Consensus 103 ~~~~~--~~~~~i~GH~H~~~~~~--~-~~~~~i-npGs~~~ 138 (190)
++... ++|+++.||+|.+.... . +|+.|+ ..|-.|.
T Consensus 159 la~~ldg~VdvIvGtHTHv~t~d~~il~~gTa~itd~Gm~G~ 200 (255)
T cd07382 159 LGWYLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTGP 200 (255)
T ss_pred HHHhCCCCceEEEeCCCCccCCccEEeeCCeEEEecCccccC
Confidence 33322 58999999999985433 5 788776 4555554
No 106
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=98.18 E-value=4.5e-05 Score=67.76 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=40.4
Q ss_pred eEEEEEecCCCCCCCC---------------ChHHHHHhhh---c-CCCccEEEEcCCCCC----------HHHHHHHhh
Q 029673 2 VLVLALGDLHIPHRAA---------------DLPAKFKSML---V-PGKIQHIVCTGNLCI----------KEVHDYLKI 52 (190)
Q Consensus 2 mri~~iSD~H~~~~~~---------------~~~~~l~~~~---~-~~~~D~vi~~GDl~~----------~~~~~~l~~ 52 (190)
++|++++|+|+.-... .-..++..++ + +.+.-+++.+||.+. ....+.++.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~ 80 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNA 80 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhc
Confidence 4799999999742110 0112233332 2 233457889999987 234555655
Q ss_pred hCCcEEEecCCccccc
Q 029673 53 ICPDLHIIRGEYDEET 68 (190)
Q Consensus 53 l~~~~~~v~GNHD~~~ 68 (190)
++ --..+.||||+..
T Consensus 81 ~g-~Da~~lGNHEFd~ 95 (550)
T TIGR01530 81 AG-FDFFTLGNHEFDA 95 (550)
T ss_pred cC-CCEEEeccccccC
Confidence 54 3578999999985
No 107
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.16 E-value=5.3e-05 Score=61.15 Aligned_cols=135 Identities=15% Similarity=0.130 Sum_probs=84.6
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC------HHHHHHHhhhCCcEEEecCCccccc-------
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI------KEVHDYLKIICPDLHIIRGEYDEET------- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~~~~v~GNHD~~~------- 68 (190)
|||++++|+=+......+.+.+.++.++.++|+++..||... ++.++.|.+.+..++.+ |||....
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~-GNH~~Dkge~~~~i 79 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITM-GNHTWFQKLILDVV 79 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEc-cchhccCcHHHHHH
Confidence 899999999874221122333444445678999999999985 67889999988777776 9999874
Q ss_pred ----------CCC------CceEEEECCEEEEEee--cCccCCC---C---------------------------CH-H-
Q 029673 69 ----------RYP------ETKTLTIGQFKLGLCH--GHQVIPW---G---------------------------DL-D- 98 (190)
Q Consensus 69 ----------~~p------~~~~~~~~~~~i~~~H--g~~~~~~---~---------------------------~~-~- 98 (190)
.+| ...+++.+|.+|.+.- |..+.+. . .. +
T Consensus 80 ~~~~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk~~~d~IIVd~HaeatsEK 159 (266)
T TIGR00282 80 INQKDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLKKDCDLIFVDFHAETTSEK 159 (266)
T ss_pred hccccccccCCCCCCCCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhhcCCCEEEEEeCCCCHHHH
Confidence 122 1235567777766543 3222111 0 00 0
Q ss_pred HHHHHhhcCCccEEEECcccCcceE-Ee--cCeEEE-ccCCCc
Q 029673 99 SLAMLQRQLDVDILVTGHTHQFTAY-KH--EGGVVI-NPGSAT 137 (190)
Q Consensus 99 ~l~~~~~~~~~~~~i~GH~H~~~~~-~~--~~~~~i-npGs~~ 137 (190)
....+.-..++++++.-|+|.+..- ++ +|+.|+ ..|-.|
T Consensus 160 ~a~~~~ldg~vsaVvGtHtHV~TaD~~il~~gtayitD~Gm~G 202 (266)
T TIGR00282 160 NAFGMAFDGYVTAVVGTHTHVPTADLRILPKGTAYITDVGMTG 202 (266)
T ss_pred HHHHHHhCCCccEEEeCCCCCCCCcceeCCCCCEEEecCCccc
Confidence 1111222458999999999998543 33 678887 345444
No 108
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.16 E-value=8e-05 Score=68.56 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=26.9
Q ss_pred HhhcCCccEEEECcccCcce------------------EEecCeEEEccCCCcC
Q 029673 103 LQRQLDVDILVTGHTHQFTA------------------YKHEGGVVINPGSATG 138 (190)
Q Consensus 103 ~~~~~~~~~~i~GH~H~~~~------------------~~~~~~~~inpGs~~~ 138 (190)
+++-.++|+++.||+|.... ..++++.++.||+.+.
T Consensus 337 LA~v~GIDaIvgGHsH~~~p~~~~~~~~~~~p~vd~~~g~ingvpvVqaG~~G~ 390 (814)
T PRK11907 337 IASLSGVDAVVTGHSHAEFPSGNGTSFYAKYSGVDDINGKINGTPVTMAGKYGD 390 (814)
T ss_pred HhcCCCCCEEEECCCCCcccCccccccccccCcccccCCcCCCEEEEecChhhc
Confidence 44556899999999999652 1235788889988774
No 109
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.15 E-value=8.5e-05 Score=68.20 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=29.6
Q ss_pred hcCCccEEEECcccCcceEEecCeEEEccCCCcC
Q 029673 105 RQLDVDILVTGHTHQFTAYKHEGGVVINPGSATG 138 (190)
Q Consensus 105 ~~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~ 138 (190)
+-.++|+++.||+|.......+++.++.||+.+.
T Consensus 274 ~v~gID~IlgGHsH~~~~~~ingv~vvqaG~~G~ 307 (780)
T PRK09418 274 EVPGVDAVLMGHSHTEVKDVFNGVPVVMPGVFGS 307 (780)
T ss_pred cCCCCCEEEECCCCCcccccCCCEEEEEcChhhc
Confidence 3458999999999998877788999999999885
No 110
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.12 E-value=0.00011 Score=66.36 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=26.7
Q ss_pred hhcCCccEEEECcccCcce--------------EEecCeEEEccCCCcC
Q 029673 104 QRQLDVDILVTGHTHQFTA--------------YKHEGGVVINPGSATG 138 (190)
Q Consensus 104 ~~~~~~~~~i~GH~H~~~~--------------~~~~~~~~inpGs~~~ 138 (190)
.+-.++|+++.||+|.... ...+++.++.||+.+.
T Consensus 247 ~~v~gID~Il~GHsH~~~p~~~~~~~~~~d~~~g~i~g~pvv~aG~~G~ 295 (649)
T PRK09420 247 SEVPGIDAIMFGHSHAVFPGKDFADIPGADIAKGTLNGVPAVMPGRWGD 295 (649)
T ss_pred hcCCCCCEEEeCCCCccCcCcccccCCccccccccCCCEEEEeCChhhc
Confidence 4456899999999998642 1246788999998884
No 111
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.03 E-value=0.00015 Score=59.99 Aligned_cols=66 Identities=17% Similarity=0.050 Sum_probs=38.4
Q ss_pred eEEEEEecCCCCCCCCChHHHH---HhhhcC-----CCccEEEEcCCCCCH------------------HHHHHHhhhCC
Q 029673 2 VLVLALGDLHIPHRAADLPAKF---KSMLVP-----GKIQHIVCTGNLCIK------------------EVHDYLKIICP 55 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l---~~~~~~-----~~~D~vi~~GDl~~~------------------~~~~~l~~l~~ 55 (190)
.+|++++|+|+......-..++ .+.+++ .+--.++.+||++.. ...+.++.++.
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~ 80 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGV 80 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCC
Confidence 4799999999853211111222 222221 233489999999861 22344444432
Q ss_pred cEEEecCCccccc
Q 029673 56 DLHIIRGEYDEET 68 (190)
Q Consensus 56 ~~~~v~GNHD~~~ 68 (190)
-..+.||||+..
T Consensus 81 -Da~tlGNHEFD~ 92 (313)
T cd08162 81 -QAIALGNHEFDL 92 (313)
T ss_pred -cEEecccccccc
Confidence 367899999884
No 112
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.00 E-value=1.9e-05 Score=66.78 Aligned_cols=67 Identities=21% Similarity=0.131 Sum_probs=45.9
Q ss_pred eEEEEEecCCCCCCCC-----C----------hHHHHHhhhcCCCccEEEEcCCCCC----------HHHHHHHhhhC--
Q 029673 2 VLVLALGDLHIPHRAA-----D----------LPAKFKSMLVPGKIQHIVCTGNLCI----------KEVHDYLKIIC-- 54 (190)
Q Consensus 2 mri~~iSD~H~~~~~~-----~----------~~~~l~~~~~~~~~D~vi~~GDl~~----------~~~~~~l~~l~-- 54 (190)
.||+.+||.|+-.... . +.+.+.......+||.++++||++| .+-+++++++.
T Consensus 49 ~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~ 128 (410)
T KOG3662|consen 49 TKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGR 128 (410)
T ss_pred eEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCC
Confidence 5899999999733111 0 1122233334689999999999999 12345666652
Q ss_pred ---CcEEEecCCccccc
Q 029673 55 ---PDLHIIRGEYDEET 68 (190)
Q Consensus 55 ---~~~~~v~GNHD~~~ 68 (190)
.++..++||||...
T Consensus 129 k~~~~~~~i~GNhDIGf 145 (410)
T KOG3662|consen 129 KGNIKVIYIAGNHDIGF 145 (410)
T ss_pred CCCCeeEEeCCcccccc
Confidence 57899999999985
No 113
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.98 E-value=3.4e-05 Score=68.03 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=42.4
Q ss_pred eEEEEEecCCCCCCC----------CCh--HHHHHhhh-cCCCccEEEEcCCCCC-----------HHHHHHHhhhCCcE
Q 029673 2 VLVLALGDLHIPHRA----------ADL--PAKFKSML-VPGKIQHIVCTGNLCI-----------KEVHDYLKIICPDL 57 (190)
Q Consensus 2 mri~~iSD~H~~~~~----------~~~--~~~l~~~~-~~~~~D~vi~~GDl~~-----------~~~~~~l~~l~~~~ 57 (190)
++|++++|+|+.... -.+ ...+.+.+ ++.+.-.++.+||+++ ....+.|+.++ .=
T Consensus 27 l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~-yD 105 (517)
T COG0737 27 LTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG-YD 105 (517)
T ss_pred EEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcC-Cc
Confidence 689999999984320 011 12222322 3344567999999998 23456666664 34
Q ss_pred EEecCCccccc
Q 029673 58 HIIRGEYDEET 68 (190)
Q Consensus 58 ~~v~GNHD~~~ 68 (190)
....|||++..
T Consensus 106 a~tiGNHEFd~ 116 (517)
T COG0737 106 AMTLGNHEFDY 116 (517)
T ss_pred EEeeccccccc
Confidence 77889999985
No 114
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=97.49 E-value=0.00048 Score=53.41 Aligned_cols=86 Identities=13% Similarity=0.275 Sum_probs=51.6
Q ss_pred EEEEecCCCCCCCCChHHHHHhhh---c-CCCccEEEEcCCCCCH--------H--------------HHHHHhhh--CC
Q 029673 4 VLALGDLHIPHRAADLPAKFKSML---V-PGKIQHIVCTGNLCIK--------E--------------VHDYLKII--CP 55 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~---~-~~~~D~vi~~GDl~~~--------~--------------~~~~l~~l--~~ 55 (190)
|+++||.|.+.... ..+.|.+++ + ..+++.+|++|++++. + ..+.++++ ..
T Consensus 1 Iv~~Sg~~~~~~~~-~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 79 (209)
T PF04042_consen 1 IVFASGPFLDSDNL-SLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPST 79 (209)
T ss_dssp EEEEES--CTTT-H-HHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCS
T ss_pred CEEEecCccCCCHh-HHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhccccc
Confidence 68999999864322 234555554 4 6779999999999981 0 01122222 25
Q ss_pred cEEEecCCcccccC--CC----------------------CceEEEECCEEEEEeecCc
Q 029673 56 DLHIIRGEYDEETR--YP----------------------ETKTLTIGQFKLGLCHGHQ 90 (190)
Q Consensus 56 ~~~~v~GNHD~~~~--~p----------------------~~~~~~~~~~~i~~~Hg~~ 90 (190)
++++|||++|.... +| ....+.++|.+|+++++..
T Consensus 80 ~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d~ 138 (209)
T PF04042_consen 80 QVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGDI 138 (209)
T ss_dssp EEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSHH
T ss_pred EEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCcH
Confidence 89999999999853 22 1245778999999999754
No 115
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=97.45 E-value=0.0011 Score=57.56 Aligned_cols=80 Identities=19% Similarity=0.084 Sum_probs=56.0
Q ss_pred EEEEeecCccCC---C----------CCHHHHHHHhhcC-CccEEEECcccCcceEEec---------CeEEEccCCCcC
Q 029673 82 KLGLCHGHQVIP---W----------GDLDSLAMLQRQL-DVDILVTGHTHQFTAYKHE---------GGVVINPGSATG 138 (190)
Q Consensus 82 ~i~~~Hg~~~~~---~----------~~~~~l~~~~~~~-~~~~~i~GH~H~~~~~~~~---------~~~~inpGs~~~ 138 (190)
.|+++|.+++.. + ...+++.++++++ ++..+++||+|...+.... +.+-||++|+-.
T Consensus 340 VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvd 419 (496)
T TIGR03767 340 FVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHID 419 (496)
T ss_pred EEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccCCCCCCCcCCeEEEecccccc
Confidence 577788765421 1 1234666777776 7999999999998765442 678899999875
Q ss_pred CCCCCCCCCCCcEEEEEEe---CCeEEEEEEEee
Q 029673 139 AFSSITYDVNPSFVLMDID---GLRVVVYVYELI 169 (190)
Q Consensus 139 ~~~~~~~~~~~~y~ll~~~---~~~~~~~~~~i~ 169 (190)
. +.-|-++|+. ++.+++....++
T Consensus 420 f--------Pq~~Ri~Ei~~n~dgt~si~tt~vd 445 (496)
T TIGR03767 420 F--------PQQGRIIELADNQDGTVSIFTTLIE 445 (496)
T ss_pred C--------CCCceEEEEEeCCCCcEEEEEEecc
Confidence 3 6788999995 445666666664
No 116
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.95 E-value=0.0032 Score=49.85 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=38.7
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhh----CCcEEEecCCccccc
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKII----CPDLHIIRGEYDEET 68 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l----~~~~~~v~GNHD~~~ 68 (190)
+.+.+|+|+- ..++.+ +.++-..-.---.+++||++| .|++-.|-.+ +.++..++|||+...
T Consensus 45 vtvcGDIHGQ--f~Dlle-lf~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 45 VTVCGDIHGQ--FYDLLE-LFRIGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQ 115 (303)
T ss_pred cEEeecccch--HHHHHH-HHHhCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhh
Confidence 4678999982 122222 222222334456899999999 3444443322 357899999999984
No 117
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=96.94 E-value=0.02 Score=47.73 Aligned_cols=62 Identities=24% Similarity=0.231 Sum_probs=39.7
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhc-CCCccEEEEcCCCCCH-----HHHHHHhh----hCCcEEEecCCccccc
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLV-PGKIQHIVCTGNLCIK-----EVHDYLKI----ICPDLHIIRGEYDEET 68 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~-~~~~D~vi~~GDl~~~-----~~~~~l~~----l~~~~~~v~GNHD~~~ 68 (190)
|.+++|+|+. ..++.+.|.. .. ...-...+++||++|+ |++-.|-. .+..++.+.|||+...
T Consensus 61 V~i~GDiHGq--~~DLlrlf~~-~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~ 132 (331)
T KOG0374|consen 61 VKIVGDIHGQ--FGDLLRLFDL-LGSFPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECAS 132 (331)
T ss_pred EEEEccCcCC--HHHHHHHHHh-cCCCCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEecccccccc
Confidence 6789999983 2244443333 22 2234558999999992 33333332 2357999999999984
No 118
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=96.93 E-value=0.003 Score=50.72 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=36.9
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC----HHHHH---HHhhhC-CcEEEecCCccccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI----KEVHD---YLKIIC-PDLHIIRGEYDEET 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~----~~~~~---~l~~l~-~~~~~v~GNHD~~~ 68 (190)
.|++.+||+|.-.. .+.+ -..-|.++++||+.. .|+.+ ++-++. ..-+.|.|||+...
T Consensus 62 ~r~VcisdtH~~~~------~i~~---~p~gDvlihagdfT~~g~~~ev~~fn~~~gslph~yKIVIaGNHELtF 127 (305)
T KOG3947|consen 62 ARFVCISDTHELTF------DIND---IPDGDVLIHAGDFTNLGLPEEVIKFNEWLGSLPHEYKIVIAGNHELTF 127 (305)
T ss_pred eEEEEecCcccccC------cccc---CCCCceEEeccCCccccCHHHHHhhhHHhccCcceeeEEEeeccceee
Confidence 48899999996211 1112 257899999999998 23322 222222 23478999998764
No 119
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=96.88 E-value=0.14 Score=40.67 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=58.1
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC------HHHHHHHhhhCCcEEEecCCccccc-------
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI------KEVHDYLKIICPDLHIIRGEYDEET------- 68 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~~~~v~GNHD~~~------- 68 (190)
||+++++|+=+........+.|..+-.+.++|++|..|--.. ++.++.|.+.+. =++..|||=...
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~-dviT~GNH~wd~~ei~~~i 79 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGA-DVITLGNHTWDQKEILDFI 79 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCC-CEEecccccccchHHHHHh
Confidence 899999999984322122233444445678999999998765 677888877764 367899997653
Q ss_pred ----------CCCC------ceEEEECCEEEEEee
Q 029673 69 ----------RYPE------TKTLTIGQFKLGLCH 87 (190)
Q Consensus 69 ----------~~p~------~~~~~~~~~~i~~~H 87 (190)
.+|. ..++..+|.++.++-
T Consensus 80 ~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~N 114 (266)
T COG1692 80 DNADRILRPANYPDGTPGKGSRIFKINGKKLAVIN 114 (266)
T ss_pred hcccceeccCCCCCCCCcceEEEEEeCCcEEEEEE
Confidence 1232 346677888887765
No 120
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=96.77 E-value=0.0045 Score=51.56 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=39.1
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhc--CCCccEEEEcCCCCC------------HHHHHHHhh----------hCCcE
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLV--PGKIQHIVCTGNLCI------------KEVHDYLKI----------ICPDL 57 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~--~~~~D~vi~~GDl~~------------~~~~~~l~~----------l~~~~ 57 (190)
|||++-+=.|+... ++.+.+..+-+ ..++|.++|+||+-. +.-+..+.. .+.+.
T Consensus 1 MrIaVqGCcHG~Ld--~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlT 78 (456)
T KOG2863|consen 1 MRIAVQGCCHGELD--NIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLT 78 (456)
T ss_pred CceeeecccchhHH--HHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeE
Confidence 89999999997211 22222222211 248999999999864 111222221 12467
Q ss_pred EEecCCcccc
Q 029673 58 HIIRGEYDEE 67 (190)
Q Consensus 58 ~~v~GNHD~~ 67 (190)
++|-|||+..
T Consensus 79 IFIGGNHEAs 88 (456)
T KOG2863|consen 79 IFIGGNHEAS 88 (456)
T ss_pred EEecCchHHH
Confidence 8999999987
No 121
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.55 E-value=0.0037 Score=48.77 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=37.4
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcCCCcc-EEEEcCCCCC-----HHHHHHHh----hhCCcEEEecCCccccc
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVPGKIQ-HIVCTGNLCI-----KEVHDYLK----IICPDLHIIRGEYDEET 68 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D-~vi~~GDl~~-----~~~~~~l~----~l~~~~~~v~GNHD~~~ 68 (190)
+-+.+|+|+ ...++.+.|..- -+=|| -.|+.||++| .|++..|- +.+.++-.++|||+...
T Consensus 48 VTvCGDIHG--QFyDL~eLFrtg--G~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRq 118 (306)
T KOG0373|consen 48 VTVCGDIHG--QFYDLLELFRTG--GQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQ 118 (306)
T ss_pred eeEeeccch--hHHHHHHHHHhc--CCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhh
Confidence 346799998 222333322221 12234 3788999999 35544443 33457899999999974
No 122
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=96.29 E-value=0.014 Score=51.50 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=28.5
Q ss_pred CCccEEEEcCCCCC---------------HHHHHHHhhhC--CcEEEecCCccccc
Q 029673 30 GKIQHIVCTGNLCI---------------KEVHDYLKIIC--PDLHIIRGEYDEET 68 (190)
Q Consensus 30 ~~~D~vi~~GDl~~---------------~~~~~~l~~l~--~~~~~v~GNHD~~~ 68 (190)
.++|+|+.+||... ..+.+.+.+.. .|+|...||||...
T Consensus 209 ~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P 264 (577)
T KOG3770|consen 209 KDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHP 264 (577)
T ss_pred CCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCc
Confidence 34999999999986 12233444443 58999999999873
No 123
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=95.35 E-value=0.27 Score=39.36 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=69.8
Q ss_pred EEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC------HHHHHHHhhhCCcEEEecCCccccc----------
Q 029673 5 LALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI------KEVHDYLKIICPDLHIIRGEYDEET---------- 68 (190)
Q Consensus 5 ~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~------~~~~~~l~~l~~~~~~v~GNHD~~~---------- 68 (190)
++++|+=+......+.+.|.++.++.++|+||..|.=.. +..++.|.+++. =.+..|||=...
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~Gv-DviT~GNH~wdkkei~~~i~~~ 79 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFKAGV-DVITMGNHIWDKKEIFDFIDKE 79 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT--SEEE--TTTTSSTTHHHHHHH-
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHhcCC-CEEecCcccccCcHHHHHHhcC
Confidence 577888763211122334555556789999999998775 677888888875 367899997763
Q ss_pred -------CCCC------ceEEEECCEEEEEee--cCccCCCC-----------------------------CHHHH-HHH
Q 029673 69 -------RYPE------TKTLTIGQFKLGLCH--GHQVIPWG-----------------------------DLDSL-AML 103 (190)
Q Consensus 69 -------~~p~------~~~~~~~~~~i~~~H--g~~~~~~~-----------------------------~~~~l-~~~ 103 (190)
.+|. ..+++.++.++.++- |..+.+.. ++|.. ..+
T Consensus 80 ~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l~~~~~~iiVDFHAEaTSEK~A~g~ 159 (253)
T PF13277_consen 80 PRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEELKEETDIIIVDFHAEATSEKQAMGW 159 (253)
T ss_dssp SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH-----SEEEEEEE-S-HHHHHHHHH
T ss_pred CCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhccccCCEEEEEeecCcHHHHHHHHH
Confidence 2332 356777888887765 33221110 01111 011
Q ss_pred hhcCCccEEEECcccCcceE-Ee--cCeEEEc-cCCCc
Q 029673 104 QRQLDVDILVTGHTHQFTAY-KH--EGGVVIN-PGSAT 137 (190)
Q Consensus 104 ~~~~~~~~~i~GH~H~~~~~-~~--~~~~~in-pGs~~ 137 (190)
.-.-.+..++--|||.+-.- ++ +|+.|+. .|..|
T Consensus 160 ~lDGrvsaV~GTHTHVqTaDerILp~GTaYiTDvGMtG 197 (253)
T PF13277_consen 160 YLDGRVSAVVGTHTHVQTADERILPGGTAYITDVGMTG 197 (253)
T ss_dssp HHBTTBSEEEEESSSS-BS--EE-TTS-EEES---EBE
T ss_pred HhCCcEEEEEeCCCCccCchhhccCCCCEEEecCcccc
Confidence 12447889999999998643 32 5888883 44444
No 124
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=95.18 E-value=0.048 Score=47.30 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=38.1
Q ss_pred HHHHHhhc-CCccEEEECcccCcceEEe---------cCeEEEccCCCcCCCCCCCCCCCCcEEEEEEe---CCeEEEEE
Q 029673 99 SLAMLQRQ-LDVDILVTGHTHQFTAYKH---------EGGVVINPGSATGAFSSITYDVNPSFVLMDID---GLRVVVYV 165 (190)
Q Consensus 99 ~l~~~~~~-~~~~~~i~GH~H~~~~~~~---------~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~---~~~~~~~~ 165 (190)
.+..++++ .++..++|||.|+...... .+-+-|++.|+-.. ++-+-++|+- ++.++++.
T Consensus 389 eLlaLL~~hPnVla~LsGHvHrn~v~a~~~p~~~~pe~gFWeveTaSl~Df--------PQq~R~~Ei~~n~d~tvsi~t 460 (492)
T TIGR03768 389 GLVTTLQKYPNLLMWIAGHRHLNTVKAFPSPDPARPEYGFWQVETASLRDF--------PQQFRTFEIYLNSDDTVSIEA 460 (492)
T ss_pred HHHHHHhcCCCeEEEEcCCcccccccccCCCCCCCCcCceEEEeehhhccc--------hhhceEEEEEeCCCCeEEEEE
Confidence 45555554 4688899999998766533 24455666665542 4566666664 44566655
Q ss_pred EEe
Q 029673 166 YEL 168 (190)
Q Consensus 166 ~~i 168 (190)
..+
T Consensus 461 t~v 463 (492)
T TIGR03768 461 VNV 463 (492)
T ss_pred Eec
Confidence 555
No 125
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=95.14 E-value=0.061 Score=43.89 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=42.9
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhc--------CCCccEEEEcCCCCC-------------HHHHHHHhh-----h--
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLV--------PGKIQHIVCTGNLCI-------------KEVHDYLKI-----I-- 53 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~--------~~~~D~vi~~GDl~~-------------~~~~~~l~~-----l-- 53 (190)
.+++++||+|++.. ...++|.+++. .+-|-.+|.+|+++. ++-++.|+. .
T Consensus 28 ~~~VilSDV~LD~p--~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSP--YTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCH--HHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 57899999999643 33445555442 123889999999886 122333332 1
Q ss_pred ---CCcEEEecCCccccc
Q 029673 54 ---CPDLHIIRGEYDEET 68 (190)
Q Consensus 54 ---~~~~~~v~GNHD~~~ 68 (190)
...+++|||-.|.+.
T Consensus 106 L~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPCA 123 (291)
T ss_pred HHhcCeEEEECCCCCCCc
Confidence 157899999999964
No 126
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=94.79 E-value=0.18 Score=43.85 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=14.4
Q ss_pred cCCCccEEEEcCCCCC
Q 029673 28 VPGKIQHIVCTGNLCI 43 (190)
Q Consensus 28 ~~~~~D~vi~~GDl~~ 43 (190)
.....|++|.+||-+|
T Consensus 96 ~~~p~df~is~GD~~n 111 (492)
T TIGR03768 96 KRDRFDFGISLGDACN 111 (492)
T ss_pred cCCCceEEEecccccc
Confidence 4678999999999999
No 127
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=94.69 E-value=0.068 Score=46.67 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=13.5
Q ss_pred CCCccEEEEcCCCCC
Q 029673 29 PGKIQHIVCTGNLCI 43 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~ 43 (190)
....|+++.+||-+|
T Consensus 93 ~~~~df~i~~GD~~d 107 (496)
T TIGR03767 93 GTALDFVVSTGDNTD 107 (496)
T ss_pred CCceeEEEecccccc
Confidence 467999999999998
No 128
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=94.45 E-value=0.053 Score=43.45 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=40.6
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcCCCcc-EEEEcCCCCC-----HHHHHHHhhhC----CcEEEecCCccccc
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVPGKIQ-HIVCTGNLCI-----KEVHDYLKIIC----PDLHIIRGEYDEET 68 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D-~vi~~GDl~~-----~~~~~~l~~l~----~~~~~v~GNHD~~~ 68 (190)
..+.+|+|+... .+.+.| ++ .-..+| -.++.||.++ .++..+|-.+. ..+..++|||+...
T Consensus 62 vtvcGDvHGqf~--dl~ELf-ki-GG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrq 132 (319)
T KOG0371|consen 62 VTVCGDVHGQFH--DLIELF-KI-GGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQ 132 (319)
T ss_pred eEEecCcchhHH--HHHHHH-Hc-cCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHH
Confidence 457899998321 333322 32 233444 4789999999 46666666554 57899999999984
No 129
>PHA03008 hypothetical protein; Provisional
Probab=93.48 E-value=0.27 Score=37.75 Aligned_cols=55 Identities=5% Similarity=-0.091 Sum_probs=37.5
Q ss_pred EEEEEeecCccCC---CCCHHHHHHHhhcCCccEEEECccc---CcceEEecCeEEEccCC
Q 029673 81 FKLGLCHGHQVIP---WGDLDSLAMLQRQLDVDILVTGHTH---QFTAYKHEGGVVINPGS 135 (190)
Q Consensus 81 ~~i~~~Hg~~~~~---~~~~~~l~~~~~~~~~~~~i~GH~H---~~~~~~~~~~~~inpGs 135 (190)
.-|+++||+|+.. ..+-+.|..-+.+.++++.++||.- .|......++.++|..-
T Consensus 162 tDILITHgPP~GhLD~~vGC~~Ll~~I~rVKPKyHVFGh~~~~~~p~~~~y~di~f~nsni 222 (234)
T PHA03008 162 CDILITASPPFAILDDDLACGDLFSKVIKIKPKFHIFNGLTQFSHPNIFIYKDIIFINSNI 222 (234)
T ss_pred CCEEEeCCCCccccccccCcHHHHHHHHHhCCcEEEeCCccccCCCcEEEecceEEEeccc
Confidence 4699999999753 2244445444446688999999933 35566667888888743
No 130
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=1.3 Score=38.44 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=38.2
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcC-CCccEEEEcCCCCC-H----HHHHHHh---hhCCcEEEecCCcc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVP-GKIQHIVCTGNLCI-K----EVHDYLK---IICPDLHIIRGEYD 65 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~-~~~D~vi~~GDl~~-~----~~~~~l~---~l~~~~~~v~GNHD 65 (190)
.||++++|.-+. ...+.+++.+.-++ ...|+++|.|++++ + |+.++.. +.+.|+|+.-+|--
T Consensus 6 ~kILv~Gd~~Gr--~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vPiptY~~g~~~~ 76 (528)
T KOG2476|consen 6 AKILVCGDVEGR--FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVPIPTYFLGDNAN 76 (528)
T ss_pred ceEEEEcCcccc--HHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCceeEEEecCCCC
Confidence 389999999873 11233333333333 45999999999998 2 2223222 23457788777763
No 131
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=90.90 E-value=11 Score=33.59 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=78.6
Q ss_pred HHHhhhcCCCccEEEEcCCCCC---------------HH-----HHHHHhhhCC---cEEEecCCccccc--CC------
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCI---------------KE-----VHDYLKIICP---DLHIIRGEYDEET--RY------ 70 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~---------------~~-----~~~~l~~l~~---~~~~v~GNHD~~~--~~------ 70 (190)
.+.+.+++++||.++.+|=++| .+ +...|+.+.. .+++||-=.|... -+
T Consensus 363 dll~~v~~~~pdvLIL~GPFlD~~h~~i~~~~~t~t~delF~~~i~~ile~~~~~~~~vVlvPs~~Da~~~~vfPq~pf~ 442 (600)
T KOG1625|consen 363 DLLDYVNAERPDVLILFGPFLDSKHPLINKGALTITFDELFEKLILGILETLVGSKTQVVLVPSTNDALCLPVFPQPPFA 442 (600)
T ss_pred HHHHHHhcCCCCEEEEeccccCccChhhccCCcCccHHHHHHHHHHHHHHhccCCcceEEEeccccccccCccCCCCchh
Confidence 4555567899999999999998 12 2334555542 3788888777753 11
Q ss_pred --------------CCceEEEECCEEEEEeecCc---------------------------------cCCCCCHHHH---
Q 029673 71 --------------PETKTLTIGQFKLGLCHGHQ---------------------------------VIPWGDLDSL--- 100 (190)
Q Consensus 71 --------------p~~~~~~~~~~~i~~~Hg~~---------------------------------~~~~~~~~~l--- 100 (190)
+....+.+++..+.++--.. ++|-..++++
T Consensus 443 ~~~~~~~~~~l~~~~nPc~f~in~v~vg~ts~D~l~~Ls~eE~~~~~~~~~~dR~~Rls~HlL~QrsfYPL~PP~dl~~s 522 (600)
T KOG1625|consen 443 RNRLSDEKKNLKCVANPCLFSINGVEVGVTSTDTLLHLSSEEFFRNALQSNGDRLARLSSHLLTQRSFYPLFPPEDLPVS 522 (600)
T ss_pred hhhccCcccceEEccCcceEEEccEEEEeecchHHHHhhhhHhhcCCCCcchHHHHHHHHHHhhcccccccCCchhcchh
Confidence 12234566776666553211 1111121221
Q ss_pred ----HHHhh-cCCccEEEECcccCcceEEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEe
Q 029673 101 ----AMLQR-QLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAFSSITYDVNPSFVLMDID 157 (190)
Q Consensus 101 ----~~~~~-~~~~~~~i~GH~H~~~~~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~ 157 (190)
.+.+. ..-+|++|.---=++++...++..+||||-+.. +.+.++||-+.+.
T Consensus 523 ~~~~~~~~~~~~~PdIlIlPSdLr~Fvk~V~~~V~iNpGr~aK------g~~~Gtfa~lti~ 578 (600)
T KOG1625|consen 523 YSLLLKYAQIGSTPDILILPSDLRHFVKDVNGCVVINPGRLAK------GTNGGTFAKLTIR 578 (600)
T ss_pred hhhHHHHhccCCCCcEEEechhhHHHHHhcCCeEEEcchhhcc------CcCCceeEEEEEe
Confidence 22222 234666666544455566678999999999885 3357899999987
No 132
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=90.71 E-value=0.27 Score=41.28 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=36.7
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCH-----HHHHHHhhh----CCcEEEecCCcccc
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIK-----EVHDYLKII----CPDLHIIRGEYDEE 67 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~l----~~~~~~v~GNHD~~ 67 (190)
|-+.+|||+- ..++.+ +.+.=....--..+++||.+|+ |++-+|=.+ ...++.++|||+=.
T Consensus 90 iTVCGDIHGQ--f~DLmK-LFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 90 ITVCGDIHGQ--FFDLMK-LFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECR 159 (517)
T ss_pred eeEecccchH--HHHHHH-HHHccCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchh
Confidence 5678999982 122222 2222123334567899999993 444444333 24578899999976
No 133
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=90.58 E-value=0.94 Score=39.07 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=46.5
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhh---cCCCccEEEEcCCCCC-----------HHHHHHHhhh---------CCcEE
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSML---VPGKIQHIVCTGNLCI-----------KEVHDYLKII---------CPDLH 58 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~---~~~~~D~vi~~GDl~~-----------~~~~~~l~~l---------~~~~~ 58 (190)
.++.++||+|++.. ...+++.+++ +...|-+||.+|.+.. ++.+.+|+.. ...++
T Consensus 283 ~~fVfLSdV~LD~~--~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~fI 360 (525)
T KOG3818|consen 283 TSFVFLSDVFLDDK--KVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQFI 360 (525)
T ss_pred ceEEEEehhccccH--HHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceEE
Confidence 36788999999532 3445566665 4567899999999986 3445555543 13679
Q ss_pred EecCCccccc
Q 029673 59 IIRGEYDEET 68 (190)
Q Consensus 59 ~v~GNHD~~~ 68 (190)
+|||-.|.+.
T Consensus 361 FVPGP~Dp~~ 370 (525)
T KOG3818|consen 361 FVPGPNDPWV 370 (525)
T ss_pred EecCCCCCCc
Confidence 9999999996
No 134
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=90.51 E-value=1.3 Score=39.59 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=39.6
Q ss_pred eEEEEEecCCCCCCC------C-----Ch---HHHHHhhhcCCCccE-EEEcCCCCC----------H-HHHHHHhhhCC
Q 029673 2 VLVLALGDLHIPHRA------A-----DL---PAKFKSMLVPGKIQH-IVCTGNLCI----------K-EVHDYLKIICP 55 (190)
Q Consensus 2 mri~~iSD~H~~~~~------~-----~~---~~~l~~~~~~~~~D~-vi~~GDl~~----------~-~~~~~l~~l~~ 55 (190)
+++.+.||+|+.... + .+ ...+.++.++.++|. ++-+||.-+ + +.-..|.++..
T Consensus 43 ~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~~~~~ 122 (602)
T KOG4419|consen 43 PNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLFKMMP 122 (602)
T ss_pred ccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCceeeeccCCchHHHHHHHhcCc
Confidence 578999999984431 0 01 112233335667776 566899887 1 22334444422
Q ss_pred cEEEecCCccccc
Q 029673 56 DLHIIRGEYDEET 68 (190)
Q Consensus 56 ~~~~v~GNHD~~~ 68 (190)
-=..+.|||+...
T Consensus 123 yD~l~lGNHEl~~ 135 (602)
T KOG4419|consen 123 YDILTLGNHELYQ 135 (602)
T ss_pred cchhhhcchhhhh
Confidence 2467899999985
No 135
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=89.70 E-value=1.4 Score=34.74 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=19.1
Q ss_pred HHHHHHHhhhCCcEEEecCCccccc
Q 029673 44 KEVHDYLKIICPDLHIIRGEYDEET 68 (190)
Q Consensus 44 ~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
++.++.|++++..+..+.+||+...
T Consensus 63 ~~~~~~l~~~G~d~~~laNNH~fD~ 87 (239)
T smart00854 63 PENAAALKAAGFDVVSLANNHSLDY 87 (239)
T ss_pred HHHHHHHHHhCCCEEEeccCccccc
Confidence 5677888888776777777999874
No 136
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=89.30 E-value=0.21 Score=44.68 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=40.4
Q ss_pred HHHhhcCCcc----EEEECcccCcce-----EEecCeEEEccCCCcCCCCCCCCCCCCcEEEEEEeCC
Q 029673 101 AMLQRQLDVD----ILVTGHTHQFTA-----YKHEGGVVINPGSATGAFSSITYDVNPSFVLMDIDGL 159 (190)
Q Consensus 101 ~~~~~~~~~~----~~i~GH~H~~~~-----~~~~~~~~inpGs~~~~~~~~~~~~~~~y~ll~~~~~ 159 (190)
..+++..+.+ -+|-||+..-.. .+-+|..++--|.++.++. ...+.++|.++--+-+
T Consensus 512 ~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskAYq--k~TGIAGYTLiyNS~g 577 (640)
T PF06874_consen 512 DKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKAYQ--KTTGIAGYTLIYNSYG 577 (640)
T ss_pred HHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhhhc--cccCccceEEEecCCc
Confidence 4556666665 899999987532 2447888888888887752 4567889998876544
No 137
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.27 E-value=0.86 Score=39.60 Aligned_cols=64 Identities=22% Similarity=0.286 Sum_probs=39.2
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCCH-----HHHHHHhh--h--CCcEEEecCCcccc
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCIK-----EVHDYLKI--I--CPDLHIIRGEYDEE 67 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~-----~~~~~l~~--l--~~~~~~v~GNHD~~ 67 (190)
.++.+.+|+|+- .+++...+........-.--+..||+++. ++...+.. + ...++...|||+..
T Consensus 214 ~~~sv~gd~hGq--fydl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~ 286 (476)
T KOG0376|consen 214 VKISVCGDTHGQ--FYDLLNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESD 286 (476)
T ss_pred ceEEecCCcccc--ccchhhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccch
Confidence 368899999983 23444433333233444557889999982 22222222 1 24789999999776
No 138
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=86.52 E-value=2.3 Score=33.48 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=30.1
Q ss_pred CCEEEEEeecCccCCCCCHHHHHHHh---hcCCccEEEECcccCcceEE-ecCeEEE
Q 029673 79 GQFKLGLCHGHQVIPWGDLDSLAMLQ---RQLDVDILVTGHTHQFTAYK-HEGGVVI 131 (190)
Q Consensus 79 ~~~~i~~~Hg~~~~~~~~~~~l~~~~---~~~~~~~~i~GH~H~~~~~~-~~~~~~i 131 (190)
.+.-|+++|..............+++ ...++|+++.||+|...... .++++++
T Consensus 175 ~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E~~~~~~I~ 231 (239)
T cd07381 175 ADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQGIEIYKGKLIF 231 (239)
T ss_pred CCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeEEECCEEEE
Confidence 45678888854322111112222233 34689999999999976543 3455443
No 139
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=84.21 E-value=1.6 Score=37.95 Aligned_cols=38 Identities=3% Similarity=-0.036 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCC
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLC 42 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~ 42 (190)
+||++.|+.+... .....+..+.++.++|+++++||.+
T Consensus 106 ~r~a~~SC~~~~~---~~~~~~~~~a~~~~~D~~l~lGD~I 143 (453)
T PF09423_consen 106 FRFAFGSCQNYED---GYFPAYRRIAERDDPDFVLHLGDQI 143 (453)
T ss_dssp EEEEEE----CCC------HHHHHHTT-S--SEEEE-S-SS
T ss_pred eEEEEECCCCccc---ChHHHHHhhhccCCCcEEEEeCCee
Confidence 6999999998632 2345566665447999999999987
No 140
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=79.42 E-value=2.4 Score=29.25 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=36.9
Q ss_pred CeEEEEEecCCCC--C-----------CCCChHHHHHhhhcCCCccEEEEcCCCCC--HHHHHHHhhhCCc-EEEecCCc
Q 029673 1 MVLVLALGDLHIP--H-----------RAADLPAKFKSMLVPGKIQHIVCTGNLCI--KEVHDYLKIICPD-LHIIRGEY 64 (190)
Q Consensus 1 mmri~~iSD~H~~--~-----------~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~-~~~v~GNH 64 (190)
||||++++|--.- . ......+.+.+ +.+.++..|+++=++.+ ++.++.+++...| +..+|++|
T Consensus 3 ~~kIaVIGD~dtv~GFrLaGi~~~~v~~~ee~~~~i~~-l~~~d~gII~Ite~~a~~i~~~i~~~~~~~~P~Il~IP~~~ 81 (104)
T PRK01395 3 MYKIGVVGDKDSILPFKALGIDVFPVIDEQEAINTLRK-LAMEDYGIIYITEQIAADIPETIERYDNQVLPAIILIPSNQ 81 (104)
T ss_pred ceeEEEEECHHHHHHHHHcCCeeEEecChHHHHHHHHH-HhcCCcEEEEEcHHHHHHhHHHHHHhcCCCCCEEEEeCCCC
Confidence 6899999993220 0 01122333444 34678888988888776 4444444432334 46688876
Q ss_pred c
Q 029673 65 D 65 (190)
Q Consensus 65 D 65 (190)
=
T Consensus 82 g 82 (104)
T PRK01395 82 G 82 (104)
T ss_pred C
Confidence 4
No 141
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=78.74 E-value=9.9 Score=33.12 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=24.8
Q ss_pred EEEEcCCCCC-----HHHHHHHhhh----CCcEEEecCCccccc
Q 029673 34 HIVCTGNLCI-----KEVHDYLKII----CPDLHIIRGEYDEET 68 (190)
Q Consensus 34 ~vi~~GDl~~-----~~~~~~l~~l----~~~~~~v~GNHD~~~ 68 (190)
-.++.||++| -|++-.|-.+ +..++.-+|||++..
T Consensus 195 pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~m 238 (631)
T KOG0377|consen 195 PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHM 238 (631)
T ss_pred CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHH
Confidence 3678999999 3555544443 246788999999873
No 142
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=74.68 E-value=12 Score=29.76 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCEEEEEeecCccC-CCCC--HHHHHHHhhcCCccEEEECcccCcceEE-ecCeEEE-ccCC
Q 029673 79 GQFKLGLCHGHQVI-PWGD--LDSLAMLQRQLDVDILVTGHTHQFTAYK-HEGGVVI-NPGS 135 (190)
Q Consensus 79 ~~~~i~~~Hg~~~~-~~~~--~~~l~~~~~~~~~~~~i~GH~H~~~~~~-~~~~~~i-npGs 135 (190)
.+.-|+.+|..... .... ...+...+...++|+++.+|.|...-.. .++.+++ ..|.
T Consensus 184 ~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E~y~~~~I~YSLGN 245 (250)
T PF09587_consen 184 ADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHPHVIQPVEIYKGKPIFYSLGN 245 (250)
T ss_pred CCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCcccceEEECCEEEEEeCcc
Confidence 45678888854321 1111 1223333334699999999999976443 3444443 3443
No 143
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=71.46 E-value=2.1 Score=37.32 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=32.6
Q ss_pred HHhhhcCCCccEEEEcCCCCC-----HHHHHHHhhhCCcEEEecCCccccc
Q 029673 23 FKSMLVPGKIQHIVCTGNLCI-----KEVHDYLKIICPDLHIIRGEYDEET 68 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
+...+++.-+|.+=+.||+.| ....+.|.+. ..+-+-+||||...
T Consensus 182 la~~iqrLvVDhLHiVGDIyDRGP~pd~Imd~L~~y-hsvDiQWGNHDilW 231 (648)
T COG3855 182 LAYLIQRLVVDHLHIVGDIYDRGPYPDKIMDTLINY-HSVDIQWGNHDILW 231 (648)
T ss_pred HHHHHHHHhhhheeeecccccCCCCchHHHHHHhhc-ccccccccCcceEE
Confidence 344456778999999999999 2345555554 34677899999873
No 144
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=71.25 E-value=6.7 Score=26.77 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=37.5
Q ss_pred eEEEEEecCCCC--------------CCCCChHHHHHhhhcCCCccEEEEcCCCCC--HHHHHH-HhhhCCc-EEEecCC
Q 029673 2 VLVLALGDLHIP--------------HRAADLPAKFKSMLVPGKIQHIVCTGNLCI--KEVHDY-LKIICPD-LHIIRGE 63 (190)
Q Consensus 2 mri~~iSD~H~~--------------~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~-l~~l~~~-~~~v~GN 63 (190)
|||+++||--.- ...+...+.|.+++.+.++..|+++-++.+ ++.++. +++...| +..+||+
T Consensus 1 mkIaVIGD~dtv~GFrLaGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~IP~~ 80 (100)
T PRK02228 1 MEIAVIGSPEFTTGFRLAGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTLGGG 80 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEECCC
Confidence 899999993220 000123445666666788999999999877 343443 4443344 4567763
No 145
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=65.94 E-value=7.2 Score=27.18 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=43.4
Q ss_pred EEEEeecCccCCC--CCHHHHHHHhhcCCccEEEECcccCcceEEecC--eEEEccCCCcCCCCCCCCCCCCcEEEEEEe
Q 029673 82 KLGLCHGHQVIPW--GDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEG--GVVINPGSATGAFSSITYDVNPSFVLMDID 157 (190)
Q Consensus 82 ~i~~~Hg~~~~~~--~~~~~l~~~~~~~~~~~~i~GH~H~~~~~~~~~--~~~inpGs~~~~~~~~~~~~~~~y~ll~~~ 157 (190)
...++|+.+..+. ..........+....++..+||+|.+......+ ...+|+|+.+.++.. ......|++++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~w~~~~~g~~~~~--~~~~~~f~~~~~~ 122 (155)
T COG0639 45 GKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDG--GDVTAVFGIVHTP 122 (155)
T ss_pred CceeeecCCCCcchhhhHHHHHHHhhhhcccCCCccccccccCCCCCCCcccccccCCCCCCccc--cchhhHHhhhccc
Confidence 3445554444343 222333333333334789999999984332332 688999999986321 2455677766655
Q ss_pred CC
Q 029673 158 GL 159 (190)
Q Consensus 158 ~~ 159 (190)
..
T Consensus 123 ~~ 124 (155)
T COG0639 123 KL 124 (155)
T ss_pred ce
Confidence 44
No 146
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=63.05 E-value=9.8 Score=26.24 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=41.6
Q ss_pred eEEEEEecCCCCC--C-----------CCChHHHHHhhhcCCCccEEEEcCCCCC--H-HHHHHHhhhCCcEEE---ecC
Q 029673 2 VLVLALGDLHIPH--R-----------AADLPAKFKSMLVPGKIQHIVCTGNLCI--K-EVHDYLKIICPDLHI---IRG 62 (190)
Q Consensus 2 mri~~iSD~H~~~--~-----------~~~~~~~l~~~~~~~~~D~vi~~GDl~~--~-~~~~~l~~l~~~~~~---v~G 62 (190)
-||++++|.-.-. + .....+.+.+.+.+.++-.|+++=++.+ + +..+.+++...|.+. +||
T Consensus 3 ~kIaVvGd~DtilGFrlaGi~~v~~~~~~e~~~~~~~~l~~~~~gII~iTE~~a~~i~~~~i~~~~~~~~P~II~Ipipg 82 (104)
T PRK01189 3 SCITVIGERDVVLGFRLLGIGDTIEAEGKDLVKKFLEIFNNPKCKYIFVSESTKNMFDKNTLRSLESSSKPLVVFIPLPG 82 (104)
T ss_pred ceEEEEcCHHHHHHHHHcCCceEEEcCCHHHHHHHHHHHhcCCeEEEEEEHHHHhhCCHHHHHHHhccCCCeEEEEeCCC
Confidence 4699998865310 0 0111234555567788999999998887 4 566777755556655 888
Q ss_pred Ccc
Q 029673 63 EYD 65 (190)
Q Consensus 63 NHD 65 (190)
+.+
T Consensus 83 ~~~ 85 (104)
T PRK01189 83 ISE 85 (104)
T ss_pred Ccc
Confidence 776
No 147
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=61.79 E-value=8.5 Score=26.27 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=32.8
Q ss_pred eEEEEEecCCC-------CC-------CCCChHHHHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecCCc
Q 029673 2 VLVLALGDLHI-------PH-------RAADLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEY 64 (190)
Q Consensus 2 mri~~iSD~H~-------~~-------~~~~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNH 64 (190)
|||++++|.-. +- ..++..+.|.+++++.++..|+++-++.+. .-+.+++..+-+..+|+++
T Consensus 1 mkIaVIgD~dtv~GFrLaGi~~~~~v~~~ee~~~~l~~l~~~~d~gII~ite~~~~~-i~~~i~~~~P~Ii~IP~~~ 76 (100)
T PRK03957 1 MKIAVVGDRDTVTGFRLAGLTEVYEVKNPEEAKNAIKELVENDEIGIIIITERIAEE-IRDLISVALPIIVEIPDKS 76 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCCceEEeCCHHHHHHHHHHHhhCCCeEEEEEcHHHHHH-HHHHHhcCCCEEEEECCCC
Confidence 79999998432 00 001233445555556777788877665541 1122223323345677765
No 148
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=61.08 E-value=1e+02 Score=26.90 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=40.8
Q ss_pred eEEEEEecCCCCCCCCC--hHHHHHhhhcCCCccEEEEcCCCCC-------------------HHH-----HHHHhhhCC
Q 029673 2 VLVLALGDLHIPHRAAD--LPAKFKSMLVPGKIQHIVCTGNLCI-------------------KEV-----HDYLKIICP 55 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~--~~~~l~~~~~~~~~D~vi~~GDl~~-------------------~~~-----~~~l~~l~~ 55 (190)
++|++.|--.+...... .+..+.+.+++.++|.+|..|=++| +|+ ..+|.++.+
T Consensus 305 ~~iv~~sGPy~~~dd~s~~pl~~~id~vn~n~vdvlIl~GPFidi~h~li~~G~~~~t~~~~l~ElF~~r~tpiL~~~~~ 384 (581)
T COG5214 305 TSIVAFSGPYGPRDDLSGSPLFDAIDRVNANDVDVLILIGPFIDINHILIQYGATQSTPDSMLKELFIPRITPILDRNAG 384 (581)
T ss_pred eEEEEEcCCCCCccccCcChHHHHHHHhccCCccEEEEeccccCcchhhhhhCCCCCCChhHHHHHHHHhhhHHHhccCC
Confidence 35666666555321111 2334455567899999999999887 121 224555553
Q ss_pred -cEEEecCCccccc
Q 029673 56 -DLHIIRGEYDEET 68 (190)
Q Consensus 56 -~~~~v~GNHD~~~ 68 (190)
..+.+|--.|...
T Consensus 385 p~~vLIPstnDa~s 398 (581)
T COG5214 385 PKAVLIPSTNDATS 398 (581)
T ss_pred CceEEeccccchhh
Confidence 4888988777763
No 149
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=55.59 E-value=13 Score=30.09 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=25.4
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCC
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLC 42 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~ 42 (190)
.+|++.||+.+.-. .+. .+++.+..||.+++.|=.+
T Consensus 177 ~~i~faSDvqGp~~----~~~-l~~i~e~~P~v~ii~GPpt 212 (304)
T COG2248 177 SSIVFASDVQGPIN----DEA-LEFILEKRPDVLIIGGPPT 212 (304)
T ss_pred eEEEEcccccCCCc----cHH-HHHHHhcCCCEEEecCCch
Confidence 37899999998533 232 3334457999999999765
No 150
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=55.32 E-value=24 Score=28.97 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=59.6
Q ss_pred CeEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC-HHHHHHHhhhCCcEEEecCCcccccCCCCceEEEEC
Q 029673 1 MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI-KEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIG 79 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~ 79 (190)
||+|+..+.-=.+..-....+..+..++..+.. |+..|-++. +.+.+.|++.+ ++++....+ +|+ +
T Consensus 1 ~~~I~lA~prGFCaGV~RAI~ive~al~~~g~p-Iyv~~eIVHN~~Vv~~L~~~g--~~fve~l~e----~p~------~ 67 (294)
T COG0761 1 MMKILLAKPRGFCAGVDRAIQIVERALEEYGAP-IYVRHEIVHNRYVVDRLREKG--AIFVEELDE----VPD------G 67 (294)
T ss_pred CceEEEecCCccchhHHHHHHHHHHHHHHcCCC-eEEEeccccCHHHHHHHHHcC--CEecccccc----CCC------C
Confidence 788887665543211000112223334444444 999999997 77889999865 677764333 342 2
Q ss_pred CEEEEEeecCccC-----------------CCCC--HHHHHHHhhcCCccEEEECcccCcceE
Q 029673 80 QFKLGLCHGHQVI-----------------PWGD--LDSLAMLQRQLDVDILVTGHTHQFTAY 123 (190)
Q Consensus 80 ~~~i~~~Hg~~~~-----------------~~~~--~~~l~~~~~~~~~~~~i~GH~H~~~~~ 123 (190)
+.-|+=+||-+.. |+-+ .....+. .+.+..+++.||--.|...
T Consensus 68 ~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~-~~~G~~iIliG~~gHpEv~ 129 (294)
T COG0761 68 ATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERY-AREGYEIILIGHKGHPEVI 129 (294)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHH-HhCCCEEEEEccCCCCcee
Confidence 3334556764321 1100 1122222 3458899999998777653
No 151
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=51.63 E-value=31 Score=25.57 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=26.2
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecC
Q 029673 29 PGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRG 62 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
+.+||.||..+-..+.+..+.|++++.|++++..
T Consensus 67 ~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 67 ALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred ccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 5799999987654444578889999888888864
No 152
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=49.91 E-value=35 Score=26.38 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=27.0
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029673 29 PGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIR 61 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
+.+||.|+..+.....+.++.|++++.|++.+.
T Consensus 56 ~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~ 88 (235)
T cd01149 56 SLKPTLVIASDEAGPPEALDQLRAAGVPVVTVP 88 (235)
T ss_pred ccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEec
Confidence 578999999887666677889999887887765
No 153
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=48.17 E-value=67 Score=25.32 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=34.4
Q ss_pred CeEEEEEecCCCCCC--CCChHHH---HHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCC
Q 029673 1 MVLVLALGDLHIPHR--AADLPAK---FKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICP 55 (190)
Q Consensus 1 mmri~~iSD~H~~~~--~~~~~~~---l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~ 55 (190)
||.=++++|+-+.-- .....+. ..+.+++.++..++.+|--. ..+...+++++.
T Consensus 1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~-~~~~~~~~~l~~ 59 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPL-PDVLSILEELGL 59 (264)
T ss_pred CCeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCCh-HHHHHHHHHcCC
Confidence 677788999997311 1112222 22234578999999999877 556667776653
No 154
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=48.06 E-value=35 Score=27.91 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=48.3
Q ss_pred ccEEEEcCCCCC-HHHHHHHhhhCCcEEEecCCcccccCCCCceEEEECCEEEEEeecCccCCCC---------------
Q 029673 32 IQHIVCTGNLCI-KEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWG--------------- 95 (190)
Q Consensus 32 ~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~~--------------- 95 (190)
-.-|+.+|+++. +.+.+.|++.+ +.++. + |....+|+ ++.-|+=+||-+.....
T Consensus 31 ~~~vy~lG~iVHN~~Vv~~L~~~G--v~~v~-~-~~~~~v~~------~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP 100 (281)
T PRK12360 31 GKKIYTLGPLIHNNQVVSDLEEKG--VKTIE-E-SEIDSLKE------GDVVIIRSHGVSKKVYKDLKDKGLEIIDATCP 100 (281)
T ss_pred CCCeEEecCCcCCHHHHHHHHHCc--CEEEC-c-CchhhCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCc
Confidence 466999999998 88899999876 45553 2 12223332 33445557775421100
Q ss_pred CHHHHH---HHhhcCCccEEEECcccCcceEE
Q 029673 96 DLDSLA---MLQRQLDVDILVTGHTHQFTAYK 124 (190)
Q Consensus 96 ~~~~l~---~~~~~~~~~~~i~GH~H~~~~~~ 124 (190)
-..... +...+.+..+++.|+--.|...-
T Consensus 101 ~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~g 132 (281)
T PRK12360 101 FVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIG 132 (281)
T ss_pred cchHHHHHHHHHHhCCCEEEEEcCCCCceeeE
Confidence 011111 22224488899999988886643
No 155
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=47.62 E-value=67 Score=23.20 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=18.9
Q ss_pred CeEEEEEecCCCCCCCCChHHHHHhhhcCCCccE
Q 029673 1 MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQH 34 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~ 34 (190)
||||+++..++.+. .+...+.+.+.++....+.
T Consensus 1 M~ki~Ivy~S~tGn-Te~vA~~i~~~l~~~~~~~ 33 (151)
T COG0716 1 MMKILIVYGSRTGN-TEKVAEIIAEELGADGFEV 33 (151)
T ss_pred CCeEEEEEEcCCCc-HHHHHHHHHHHhccCCceE
Confidence 99999999999742 1122234444444433333
No 156
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=47.16 E-value=1.6e+02 Score=24.29 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=48.5
Q ss_pred ccEEEEcCCCCC-HHHHHHHhhhCCcEEEecCCcccccCCCCceEEEECCEEEEEeecCccCCCC---------------
Q 029673 32 IQHIVCTGNLCI-KEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWG--------------- 95 (190)
Q Consensus 32 ~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~~--------------- 95 (190)
-..++.+|+++. +.+.+.|++.+. .++. ....+|. ++.-|+=+||-+.....
T Consensus 30 ~~~iytlG~iIHN~~vv~~L~~~GV--~~v~----~~~~v~~------~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP 97 (298)
T PRK01045 30 GAPIYVRHEIVHNRYVVERLEKKGA--IFVE----ELDEVPD------GAIVIFSAHGVSPAVREEAKERGLTVIDATCP 97 (298)
T ss_pred CCCeEEEecCccCHHHHHHHHHCCC--EEec----CcccCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCc
Confidence 356999999998 888999999874 4443 2223332 33445557875421000
Q ss_pred CHHHHHH---HhhcCCccEEEECcccCcceEEe
Q 029673 96 DLDSLAM---LQRQLDVDILVTGHTHQFTAYKH 125 (190)
Q Consensus 96 ~~~~l~~---~~~~~~~~~~i~GH~H~~~~~~~ 125 (190)
....+.. ...+.+..+++.|....|...-.
T Consensus 98 ~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi 130 (298)
T PRK01045 98 LVTKVHKEVARMSREGYEIILIGHKGHPEVEGT 130 (298)
T ss_pred cchHHHHHHHHHHhCCCEEEEEeCCCCCeeeee
Confidence 0112222 22244888999999888876543
No 157
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=45.62 E-value=30 Score=24.31 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=22.6
Q ss_pred HHHHHhhhcCCCccEEEEcCCCCC--HHHHHHHhhhCCcEEEecC
Q 029673 20 PAKFKSMLVPGKIQHIVCTGNLCI--KEVHDYLKIICPDLHIIRG 62 (190)
Q Consensus 20 ~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~~~~v~G 62 (190)
.+.|.+++.+.++-.|+++=++.+ ++.++..++.-+-++.+|+
T Consensus 49 ~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~~~~PaIieIP~ 93 (115)
T TIGR01101 49 EDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHTRSIPAVLEIPS 93 (115)
T ss_pred HHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcCCcCCEEEEECC
Confidence 344555555667777777666554 3334433322233455666
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.61 E-value=65 Score=22.08 Aligned_cols=44 Identities=14% Similarity=-0.021 Sum_probs=23.7
Q ss_pred HHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecCCccc
Q 029673 23 FKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDE 66 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~ 66 (190)
+..+++..+.+.+....++...+..+.+.+..+.++.+......
T Consensus 19 ~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~ 62 (119)
T cd02067 19 VARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTT 62 (119)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 44445556666644444433355556666665666666555333
No 159
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=43.32 E-value=75 Score=25.10 Aligned_cols=44 Identities=7% Similarity=0.054 Sum_probs=32.4
Q ss_pred hhhcCCCccEEEEcCCC-CC----HHHHHHHhhhCCcEEEecCCccccc
Q 029673 25 SMLVPGKIQHIVCTGNL-CI----KEVHDYLKIICPDLHIIRGEYDEET 68 (190)
Q Consensus 25 ~~~~~~~~D~vi~~GDl-~~----~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
+.+.+.+.|.|++.|=. +. .++++.+++...|++.-|||++...
T Consensus 21 ~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~ 69 (223)
T TIGR01768 21 KAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVS 69 (223)
T ss_pred HHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccC
Confidence 33456789999999966 43 3445666766679999999999753
No 160
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=43.31 E-value=21 Score=29.99 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=17.1
Q ss_pred HHHhhhcCCCccEEEEcCCCCC
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCI 43 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~ 43 (190)
.+.+++++.+||.|+..||-..
T Consensus 58 ~~~~~~~~~~Pd~Vlv~GD~~~ 79 (346)
T PF02350_consen 58 ELADVLEREKPDAVLVLGDRNE 79 (346)
T ss_dssp HHHHHHHHHT-SEEEEETTSHH
T ss_pred HHHHHHHhcCCCEEEEEcCCch
Confidence 4566677889999999999865
No 161
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=42.17 E-value=57 Score=23.16 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=30.4
Q ss_pred HHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecC
Q 029673 23 FKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRG 62 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
+.+++...++|.|++.+ +.+..+..|++.+.++|..+|
T Consensus 57 ~a~~l~~~gvdvvi~~~--iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 57 IAELLVDEGVDVVIASN--IGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHcCCCEEEECc--cCHHHHHHHHHcCcEEEecCC
Confidence 45556678999999988 456678999998888888877
No 162
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=42.15 E-value=90 Score=20.61 Aligned_cols=40 Identities=3% Similarity=0.040 Sum_probs=27.3
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHHHHHHHh----hhCCcEEEecC
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKEVHDYLK----IICPDLHIIRG 62 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~----~l~~~~~~v~G 62 (190)
+-.+.+++...-.|++++|.-. .+...|. +.+.|+.+|+-
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~-~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEV-YLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECC
Confidence 3455567789999999999764 3444443 34578888764
No 163
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=41.68 E-value=64 Score=25.14 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=27.2
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
.+.+.+...++|.|++.+...+...++.+.+.+.|++++
T Consensus 55 ~~~~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 55 WLARYLASGRADGVILIGQHDQDPLPERLAETGLPFVVW 93 (275)
T ss_pred HHHHHHHhCCCCEEEEeCCCCChHHHHHHHhCCCCEEEE
Confidence 445555567899999887655555567777777788876
No 164
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=41.44 E-value=76 Score=20.71 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=29.1
Q ss_pred HHhhhcCCCccEEEEcCCCCC---HHHHHHHhhhC--CcEEEecCCccc
Q 029673 23 FKSMLVPGKIQHIVCTGNLCI---KEVHDYLKIIC--PDLHIIRGEYDE 66 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~--~~~~~v~GNHD~ 66 (190)
+.+.+.+..||.+++-.++.+ .++++.|++.. .+++++..+.|.
T Consensus 35 ~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSH
T ss_pred HHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCH
Confidence 344445677999999888777 45566666554 566777666664
No 165
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=40.04 E-value=24 Score=25.55 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=23.2
Q ss_pred HHHHhhhcCCCccEEEEcCCCCC----HHHHHHHhhhCCcEEEec
Q 029673 21 AKFKSMLVPGKIQHIVCTGNLCI----KEVHDYLKIICPDLHIIR 61 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~~~~~~v~ 61 (190)
+.+.+.+.+.++|.|+++=+..+ .+.++.+++.+.+++++|
T Consensus 131 ~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 131 DDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp GGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE--
T ss_pred HHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEEeC
Confidence 45666667789999999988776 344556666677787776
No 166
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=40.02 E-value=83 Score=24.97 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=32.3
Q ss_pred hhhcCCCccEEEEcCCC-CC----HHHHHHHhhhCCcEEEecCCccccc
Q 029673 25 SMLVPGKIQHIVCTGNL-CI----KEVHDYLKIICPDLHIIRGEYDEET 68 (190)
Q Consensus 25 ~~~~~~~~D~vi~~GDl-~~----~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
+.+.+...|.|++.|=. +. .++++.+++...|++.-|||++...
T Consensus 26 ~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~ 74 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIEGIS 74 (232)
T ss_pred HHHHhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCccccC
Confidence 33456789999999966 44 3455666765569999999999764
No 167
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=39.36 E-value=92 Score=24.21 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=31.2
Q ss_pred hhhcCCCccEEEEcCCC-CC----HHHHHHHhhh-CCcEEEecCCccccc
Q 029673 25 SMLVPGKIQHIVCTGNL-CI----KEVHDYLKII-CPDLHIIRGEYDEET 68 (190)
Q Consensus 25 ~~~~~~~~D~vi~~GDl-~~----~~~~~~l~~l-~~~~~~v~GNHD~~~ 68 (190)
+.+.+.+.|.+++.|=. ++ .++.+.+++. ..|++.-|||++...
T Consensus 18 ~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 18 KNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLS 67 (205)
T ss_pred HHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccC
Confidence 34456789999999864 33 2345666663 469999999999754
No 168
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=38.27 E-value=18 Score=31.83 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=19.5
Q ss_pred CHHHHHHHhhcCCcc--EEEECcccCcce
Q 029673 96 DLDSLAMLQRQLDVD--ILVTGHTHQFTA 122 (190)
Q Consensus 96 ~~~~l~~~~~~~~~~--~~i~GH~H~~~~ 122 (190)
+.+.|..+++..++. +++.|-+|....
T Consensus 392 ~RerLl~fi~~~~~~N~V~LtgDvH~~wA 420 (522)
T COG3540 392 GRERLLRFIADRKIRNTVVLTGDVHYSWA 420 (522)
T ss_pred cHHHHHHHHHhcCCCCcEEEechhHHHHH
Confidence 356677777666665 899999998654
No 169
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=36.70 E-value=75 Score=24.25 Aligned_cols=39 Identities=5% Similarity=-0.182 Sum_probs=24.7
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcE--------------EEecCCcccc
Q 029673 29 PGKIQHIVCTGNLCIKEVHDYLKIICPDL--------------HIIRGEYDEE 67 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~--------------~~v~GNHD~~ 67 (190)
...||.|+++.-..+.-++.+-.+++.|+ |.+|||-|..
T Consensus 125 ~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i~ypIP~Nd~s~ 177 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSI 177 (193)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCCCccceEEeecCCchH
Confidence 46799999998655544444444444333 6677776653
No 170
>COG2923 DsrF Uncharacterized protein involved in the oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=36.16 E-value=45 Score=23.57 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCCCCCCChHHHHHhhh---cCCCccEEEEcCCC
Q 029673 1 MVLVLALGDLHIPHRAADLPAKFKSML---VPGKIQHIVCTGNL 41 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~~~~~~l~~~~---~~~~~D~vi~~GDl 41 (190)
|+|++++.+.= +.....-.+.+..++ ....+-.|++.||=
T Consensus 1 mk~~afvf~~a-P~Gs~~~rEgLda~la~~a~~~~~~vffi~DG 43 (118)
T COG2923 1 MKKLAFVFRTA-PHGSEAGREGLDAALATSAFSLETGVFFIGDG 43 (118)
T ss_pred CceEEEEEecC-CCccHHHHhHHHHHHHHhhcccccceEEEccc
Confidence 89999999974 111222233344433 22333368888884
No 171
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.09 E-value=38 Score=25.26 Aligned_cols=70 Identities=7% Similarity=0.024 Sum_probs=34.8
Q ss_pred HHHHHHhhhCCcEEEecCCcccccCCCCceEEEECCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEEC
Q 029673 45 EVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTG 115 (190)
Q Consensus 45 ~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~G 115 (190)
++++..++...+++++-|.-+.....-....-...+.+|+-+|..++.+ ...+.+.+.++..++|+++.|
T Consensus 39 ~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~-~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 39 DLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDE-EEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCh-hhHHHHHHHHHHcCCCEEEEE
Confidence 3344444444566666666544322111112223456666666544422 123344445566788888876
No 172
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=35.13 E-value=76 Score=26.00 Aligned_cols=70 Identities=7% Similarity=0.004 Sum_probs=44.1
Q ss_pred HHhhhcCCCccEEEE---cCCCCCHHHHHHHhhhC-CcEEEecCCcccccCCCCceEEEECCEEEEEeecCccC
Q 029673 23 FKSMLVPGKIQHIVC---TGNLCIKEVHDYLKIIC-PDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVI 92 (190)
Q Consensus 23 l~~~~~~~~~D~vi~---~GDl~~~~~~~~l~~l~-~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~ 92 (190)
|.+.++.-+||.+|= .|.++.+++++.+.+.. .|+++-.-|-....+........+.+-+.++.-|.|+.
T Consensus 97 L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~ 170 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFP 170 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCC
Confidence 333444448888875 35788899999998654 68999999987754422222333332345666676653
No 173
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=34.24 E-value=25 Score=30.77 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=17.1
Q ss_pred cEEEEcCCCCC---------HHHHHHHhhhCCcEEEecC
Q 029673 33 QHIVCTGNLCI---------KEVHDYLKIICPDLHIIRG 62 (190)
Q Consensus 33 D~vi~~GDl~~---------~~~~~~l~~l~~~~~~v~G 62 (190)
-.+.+.||+.+ .++.+.+.+.....+++.|
T Consensus 370 r~i~V~G~m~elg~~~~~~h~~~~~~~~~~~~d~v~~~G 408 (479)
T PRK14093 370 RRIAVLGDMLELGPRGPELHRGLAEAIRANAIDLVFCCG 408 (479)
T ss_pred CEEEEECChHHcCcHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 57888999755 2333444443344555556
No 174
>PLN00416 carbonate dehydratase
Probab=33.55 E-value=76 Score=25.64 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=32.9
Q ss_pred CcEEEecCCcccccCCCCceEEEECCEEEEEee--cCccCCC------CCHHHHHHHhhcCCcc-EEEECcccCcce
Q 029673 55 PDLHIIRGEYDEETRYPETKTLTIGQFKLGLCH--GHQVIPW------GDLDSLAMLQRQLDVD-ILVTGHTHQFTA 122 (190)
Q Consensus 55 ~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~H--g~~~~~~------~~~~~l~~~~~~~~~~-~~i~GH~H~~~~ 122 (190)
.|..++.|--|.. +|...++..+--.+++.- |....+. .....++.-....++. +++|||++...+
T Consensus 79 ~P~alvI~CsDSR--V~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV 153 (258)
T PLN00416 79 TPKFLVFACSDSR--VCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGI 153 (258)
T ss_pred CCCEEEEEecCCC--CCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHH
Confidence 4678888888874 343333332222222221 1111110 1112344334445655 899999998764
No 175
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=32.48 E-value=76 Score=26.70 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=26.7
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHHHHHHH-hhhCCcEE-EecCCc
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKEVHDYL-KIICPDLH-IIRGEY 64 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l-~~l~~~~~-~v~GNH 64 (190)
.+.+++.+.+||.|+..||-...-..... ..++.|+. +-.|++
T Consensus 84 ~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~r 128 (365)
T TIGR03568 84 GFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEV 128 (365)
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCcc
Confidence 46666778999999999997652111111 12345666 556666
No 176
>PF10957 DUF2758: Protein of unknown function (DUF2758); InterPro: IPR020296 Cse60 is expressed during sporulation in Bacillus subtilis. Transcription commences around 2h after the start of sporulation and had an absolute requirement for the transcription factor sigmaE. Maximal expression of cse60 further depended on the DNA-binding protein SpoIIID. Cse60 is an acidic product of only 60 residues, whose function is not known [].
Probab=32.15 E-value=51 Score=20.34 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=17.8
Q ss_pred CeEEEEEecCCCCCCCCChHHHHHhhhcC
Q 029673 1 MVLVLALGDLHIPHRAADLPAKFKSMLVP 29 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~~~~~~l~~~~~~ 29 (190)
|||+-++...|-. .+..++.+++++
T Consensus 1 MikVKvFd~~he~----dLe~~vN~fL~~ 25 (60)
T PF10957_consen 1 MIKVKVFDEEHEK----DLEDQVNDFLAK 25 (60)
T ss_pred CcEEEEEehhhHH----HHHHHHHHHHHh
Confidence 8999999999952 455555565543
No 177
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=32.10 E-value=1.2e+02 Score=24.42 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=36.0
Q ss_pred EEEEecCCCCCCC----CChHHHHHhhhcCCCccEEEEcCCCCC----HHHHHHHhhhC-CcEEEecC
Q 029673 4 VLALGDLHIPHRA----ADLPAKFKSMLVPGKIQHIVCTGNLCI----KEVHDYLKIIC-PDLHIIRG 62 (190)
Q Consensus 4 i~~iSD~H~~~~~----~~~~~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~-~~~~~v~G 62 (190)
+.+++|+|..+.. ..+.+.+.+.+....+|.|+.+|.-+. .+.++.+++.. .|+++=.|
T Consensus 141 v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSG 208 (254)
T PF03437_consen 141 VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSG 208 (254)
T ss_pred eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecC
Confidence 6778898863322 134444455546688999999999875 34455555543 35554333
No 178
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=32.04 E-value=94 Score=25.07 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=46.3
Q ss_pred HHhhhcCCCccEEEEc---CCCCCHHHHHHHhhhC-CcEEEecCCcccccCCCCceEEEECCEEEEEeecCccCC
Q 029673 23 FKSMLVPGKIQHIVCT---GNLCIKEVHDYLKIIC-PDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIP 93 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~---GDl~~~~~~~~l~~l~-~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~ 93 (190)
|.+.++.-+||.+|=+ |.++.+++++.+.+.. .|+++-.-|-....+...+...++.+.+.++.-|.++.|
T Consensus 98 L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~p 172 (254)
T cd00762 98 LEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHP 172 (254)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCC
Confidence 3344444488887753 5688889999998664 689999999887554333333344444556777776644
No 179
>PLN02154 carbonic anhydrase
Probab=31.67 E-value=87 Score=25.80 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=35.1
Q ss_pred CcEEEecCCcccccCCCCceEEEECCEEEEEeec--CccCCC-----CCHHHHHHHhhcCCcc-EEEECcccCcce
Q 029673 55 PDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHG--HQVIPW-----GDLDSLAMLQRQLDVD-ILVTGHTHQFTA 122 (190)
Q Consensus 55 ~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg--~~~~~~-----~~~~~l~~~~~~~~~~-~~i~GH~H~~~~ 122 (190)
.|..++.|--|.. +|...++..+--.+++..- ....+. .....++......++. ++++||++...+
T Consensus 106 ~P~~lvi~C~DSR--V~pe~if~~~pGdlFvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV 179 (290)
T PLN02154 106 SPKVMVIGCADSR--VCPSYVLGFQPGEAFTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCGGI 179 (290)
T ss_pred CCCEEEEEecCCC--CCHHHHcCCCCCCEEEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCchHH
Confidence 5778888888874 4544444433333443331 111111 1122344334455655 899999998653
No 180
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=31.14 E-value=45 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=20.8
Q ss_pred HHHHhhhcCCCccEEEEcCCCCCHHH-HHHHhh
Q 029673 21 AKFKSMLVPGKIQHIVCTGNLCIKEV-HDYLKI 52 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~-~~~l~~ 52 (190)
+.+.+++++.+||.||++==+.. .+ +..|++
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~-~~~l~~lk~ 110 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPA-QVPLSRLKR 110 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchh-hhHHHHHHH
Confidence 35677778899999999754333 33 555554
No 181
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=30.57 E-value=31 Score=29.99 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=28.8
Q ss_pred EEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCCCC---------HHHHHHHhhhCCcEEEecC
Q 029673 4 VLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNLCI---------KEVHDYLKIICPDLHIIRG 62 (190)
Q Consensus 4 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl~~---------~~~~~~l~~l~~~~~~v~G 62 (190)
+.++=|.+.. ...++.+ +.+.+.+..--.++++||+.+ .++.+.+.+.....+++.|
T Consensus 327 ~~iIDDsYn~-nP~s~~a-aL~~l~~~~~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G 392 (453)
T PRK10773 327 QLLLDDSYNA-NVGSMTA-AAQVLAEMPGYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSVG 392 (453)
T ss_pred eEEEEcCCCC-CHHHHHH-HHHHHHhCCCCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3566676642 1113333 333333322346899999987 2333344444444555667
No 182
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=30.08 E-value=2.5e+02 Score=21.54 Aligned_cols=55 Identities=5% Similarity=-0.083 Sum_probs=26.5
Q ss_pred CeEEEEEecCCCCCCCCChHHHHHhhhcCC--CccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 1 MVLVLALGDLHIPHRAADLPAKFKSMLVPG--KIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~~~~~~l~~~~~~~--~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
||||++++==-+ ...+.+.+.+.+. ....++..-|--+..+.++.++.+.|++.+
T Consensus 1 m~ki~vl~sg~g-----s~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~ 57 (200)
T PRK05647 1 MKRIVVLASGNG-----SNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVL 57 (200)
T ss_pred CceEEEEEcCCC-----hhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEE
Confidence 888888875332 1223444444332 244444334433333445555555555543
No 183
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=29.20 E-value=1.5e+02 Score=23.00 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=20.3
Q ss_pred HHHHHHHhhhCCcEEEecCCccccc
Q 029673 44 KEVHDYLKIICPDLHIIRGEYDEET 68 (190)
Q Consensus 44 ~~~~~~l~~l~~~~~~v~GNHD~~~ 68 (190)
++.++.|++++..+..+.+||+...
T Consensus 67 ~~~~~~L~~~G~d~~tlaNNH~fD~ 91 (239)
T cd07381 67 PEVADALKAAGFDVVSLANNHTLDY 91 (239)
T ss_pred HHHHHHHHHhCCCEEEccccccccc
Confidence 6778899998877777777998874
No 184
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=29.03 E-value=1.2e+02 Score=25.67 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=31.7
Q ss_pred CeEEEEEecCCCCCCCCChHHHH----------------------HhhhcCCCccEEEEcCCCCCHHHHHHHhhh----C
Q 029673 1 MVLVLALGDLHIPHRAADLPAKF----------------------KSMLVPGKIQHIVCTGNLCIKEVHDYLKII----C 54 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~~~~~~l----------------------~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l----~ 54 (190)
|||++++-|..+ +++.+ .+.+.+..||.|..-.-+-..+-++.|+++ .
T Consensus 1 ~irVlvVddsal------~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~~p 74 (350)
T COG2201 1 KIRVLVVDDSAL------MRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRP 74 (350)
T ss_pred CcEEEEEcCcHH------HHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCEEEEecccccccHHHHHHHHhcCCC
Confidence 799999999885 12222 222345667777665555443334444332 3
Q ss_pred CcEEEecC
Q 029673 55 PDLHIIRG 62 (190)
Q Consensus 55 ~~~~~v~G 62 (190)
.|++++..
T Consensus 75 ~pVimvss 82 (350)
T COG2201 75 LPVIMVSS 82 (350)
T ss_pred CcEEEEec
Confidence 46666554
No 185
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=28.94 E-value=1.6e+02 Score=23.00 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=33.5
Q ss_pred HHHhhhcCCCccEEEEcCCC-CC------HHHHHHHhhhCCcEEEecCCcccccCCCCceEEEECCEEEEEe
Q 029673 22 KFKSMLVPGKIQHIVCTGNL-CI------KEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLC 86 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl-~~------~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~ 86 (190)
...+++++.++|.+-.++.- +| .++++.+++.+ +.++-.|-+.. ......+++.+|.+|.++
T Consensus 64 ~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~--i~~~g~~~~~~-~~~~~~i~~~~g~kIg~i 132 (239)
T smart00854 64 ENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAG--IAHVGAGRNLA-EARKPAIVEVKGIKIALL 132 (239)
T ss_pred HHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCC--CCEeeCCCChH-HhhCcEEEEECCEEEEEE
Confidence 45556667789988777653 33 33445555443 33333332221 122345667788887654
No 186
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=28.92 E-value=1.9e+02 Score=19.94 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=35.3
Q ss_pred CeEEEEEecCCCCC-------------CCCC-hHHHHHhhhcCCCccEEEEcCCCCC--HHHHHHHhhhC--CcEEEecC
Q 029673 1 MVLVLALGDLHIPH-------------RAAD-LPAKFKSMLVPGKIQHIVCTGNLCI--KEVHDYLKIIC--PDLHIIRG 62 (190)
Q Consensus 1 mmri~~iSD~H~~~-------------~~~~-~~~~l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~--~~~~~v~G 62 (190)
||||++++|--.-. ..+. ..+.+.+.+.+.++..|+++=|+.. ++..+...+.. +-+..+|+
T Consensus 2 ~~~I~VIGd~dtvtGFrLaGv~~~~v~~~~~~~~~~~~~~l~~~~~~iIiite~~a~~i~~~i~~~~~~~~~P~iv~IPs 81 (104)
T COG1436 2 MMKIAVIGDRDTVTGFRLAGVRVVYVADDEEDELRAALRVLAEDDVGIILITEDLAEKIREEIRRIIRSSVLPAIVEIPS 81 (104)
T ss_pred ceEEEEEEccchhhceeeecceeEEEecChhHHHHHHHHhhccCCceEEEEeHHHHhhhHHHHHHHhhccCccEEEEeCC
Confidence 68999999865311 0111 1233444455569999999999877 33333332222 33456777
No 187
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=28.64 E-value=80 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=13.1
Q ss_pred hCCcEEEecCCccccc
Q 029673 53 ICPDLHIIRGEYDEET 68 (190)
Q Consensus 53 l~~~~~~v~GNHD~~~ 68 (190)
+...++++.|||+...
T Consensus 126 inknvvvlagnhein~ 141 (318)
T PF13258_consen 126 INKNVVVLAGNHEINF 141 (318)
T ss_pred cccceEEEecCceecc
Confidence 3467999999999874
No 188
>PRK09982 universal stress protein UspD; Provisional
Probab=28.22 E-value=61 Score=22.92 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=22.0
Q ss_pred EEEEeecCccCCCCCHHHHHHHhhcCCccEEEECcccC
Q 029673 82 KLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQ 119 (190)
Q Consensus 82 ~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~GH~H~ 119 (190)
...+..|.+ .+.+.+.+++.++|+++.|| |.
T Consensus 83 ~~~v~~G~p------~~~I~~~A~~~~aDLIVmG~-~~ 113 (142)
T PRK09982 83 KLRIERGEM------PETLLEIMQKEQCDLLVCGH-HH 113 (142)
T ss_pred eEEEEecCH------HHHHHHHHHHcCCCEEEEeC-Ch
Confidence 344455644 35666788889999999997 64
No 189
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=28.04 E-value=1.3e+02 Score=23.38 Aligned_cols=49 Identities=22% Similarity=0.136 Sum_probs=32.5
Q ss_pred ChHHHHHhhhcCCCccEEEEcCCCCCHHHHHHHhh-hCCcEEEe-c--CCcccc
Q 029673 18 DLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKI-ICPDLHII-R--GEYDEE 67 (190)
Q Consensus 18 ~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~-l~~~~~~v-~--GNHD~~ 67 (190)
.+.+++.+.+. .++..-+++||+...+-.+.|.+ .+.|++-+ - |-|.+.
T Consensus 28 aLie~~~~~L~-~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da 80 (202)
T COG0378 28 ALIEKTLRALK-DEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDA 80 (202)
T ss_pred HHHHHHHHHHH-hhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcH
Confidence 34555555553 45999999999998766778887 66566543 3 456444
No 190
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.98 E-value=49 Score=24.67 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=16.9
Q ss_pred CCEEEEEeecCccCCCCCHHHHHHHhhcCCccEEEEC
Q 029673 79 GQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTG 115 (190)
Q Consensus 79 ~~~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~~~~i~G 115 (190)
.+.+|.-.|..++..... +.+.+.++..++|+++.|
T Consensus 71 p~l~i~g~~~g~~~~~~~-~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 71 PGLKIVGYHHGYFGPEEE-EEIIERINASGADILFVG 106 (171)
T ss_pred CCcEEEEecCCCCChhhH-HHHHHHHHHcCCCEEEEE
Confidence 444555544433332211 223344455677776665
No 191
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=27.87 E-value=1.2e+02 Score=23.41 Aligned_cols=39 Identities=8% Similarity=-0.018 Sum_probs=23.7
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcE--------------EEecCCccccc
Q 029673 30 GKIQHIVCTGNLCIKEVHDYLKIICPDL--------------HIIRGEYDEET 68 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~--------------~~v~GNHD~~~ 68 (190)
..||.|++++=..+.-++..-.+++.|+ |.+|||.|...
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~ 159 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRH 159 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHH
Confidence 4699999876444433334334444333 77888887764
No 192
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=27.85 E-value=94 Score=23.85 Aligned_cols=15 Identities=7% Similarity=0.023 Sum_probs=12.9
Q ss_pred cCCCccEEEEcCCCC
Q 029673 28 VPGKIQHIVCTGNLC 42 (190)
Q Consensus 28 ~~~~~D~vi~~GDl~ 42 (190)
.+.++|+++++||.+
T Consensus 26 ~~~~~d~~l~~GD~I 40 (228)
T cd07389 26 SEEDPDLFLHLGDQI 40 (228)
T ss_pred cccCCCEEEEcCCee
Confidence 368999999999965
No 193
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=27.76 E-value=1.2e+02 Score=25.13 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=24.4
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHHHHHHH-hhhCCcEEEe
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKEVHDYL-KIICPDLHII 60 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l-~~l~~~~~~v 60 (190)
.+.+++++.+||.|+..||....-..... ..++.|+..+
T Consensus 77 ~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 77 GLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 46666778999999999997542111111 2234677655
No 194
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=27.74 E-value=1.7e+02 Score=20.56 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=30.7
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHHHHHHHhhh----CCcEEEecCCccc
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKEVHDYLKII----CPDLHIIRGEYDE 66 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l----~~~~~~v~GNHD~ 66 (190)
...+.+++.+..+|+++.|..-.++...|..+ +.|+.+|+.-.+.
T Consensus 34 e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~L 82 (116)
T COG1358 34 EVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKEL 82 (116)
T ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHH
Confidence 34555677899999999997656655555443 4677777654443
No 195
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=27.14 E-value=1.4e+02 Score=23.55 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=34.1
Q ss_pred HHHHhhhcCCCccEEEEcCCC-C--C-HHHHHHHhhhC--CcEEEecCCcccc
Q 029673 21 AKFKSMLVPGKIQHIVCTGNL-C--I-KEVHDYLKIIC--PDLHIIRGEYDEE 67 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl-~--~-~~~~~~l~~l~--~~~~~v~GNHD~~ 67 (190)
+.+.++..+...|+|++.|=. + . .++.+.+++.. .|++.-|||.+..
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~~~~Pvilfp~~~~~i 67 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRRPVPVILFPSNPEAV 67 (219)
T ss_pred HHHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHhcCCCCEEEeCCCcccc
Confidence 345555555789999999966 4 2 34566677664 7899999999975
No 196
>PRK06932 glycerate dehydrogenase; Provisional
Probab=27.07 E-value=2.2e+02 Score=23.56 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=25.0
Q ss_pred CeEEEEEecCCCCCCCC---------------ChHHHHHhhhcCCCccEEEEcCCCCCHHHHHHH
Q 029673 1 MVLVLALGDLHIPHRAA---------------DLPAKFKSMLVPGKIQHIVCTGNLCIKEVHDYL 50 (190)
Q Consensus 1 mmri~~iSD~H~~~~~~---------------~~~~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l 50 (190)
||||+++++........ ...+.+.+.+ .+.|.++...+-++.++++.+
T Consensus 1 ~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~ii~~~~~~~~~~l~~~ 63 (314)
T PRK06932 1 MMKIVFLDSTAIPKHINIPRPSFPHEWIEYDHTSAEQTIERA--KDADIVITSKVLFTRETLAQL 63 (314)
T ss_pred CcEEEEEeccccCcccccccccCceEEEEecCCChHHHHHHh--CCCcEEEEeCCCCCHHHHhhC
Confidence 89999988754321000 0012233333 567877765555665555443
No 197
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=27.04 E-value=1.6e+02 Score=22.28 Aligned_cols=76 Identities=21% Similarity=0.087 Sum_probs=36.4
Q ss_pred HHHHHhhhCCcEEEecCCcccccCCCCceEEEECCEEEEEee--cCccCCC--CCHHHHHHHhhcCCcc-EEEECcccCc
Q 029673 46 VHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCH--GHQVIPW--GDLDSLAMLQRQLDVD-ILVTGHTHQF 120 (190)
Q Consensus 46 ~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~H--g~~~~~~--~~~~~l~~~~~~~~~~-~~i~GH~H~~ 120 (190)
.++.+.+-..|..++.|--|.. +|...++..+--.+++.- |....+. .....++......++. ++++||+...
T Consensus 15 ~~~~l~~gQ~P~~~vi~CsDSR--v~pe~if~~~~GdlFViRnaGN~v~~~~~~~~asleyAv~~L~v~~IvV~GHs~CG 92 (182)
T cd00883 15 FFPRLAKGQTPEYLWIGCSDSR--VPENTILGLLPGEVFVHRNIANLVSPTDLNCLSVLQYAVDVLKVKHIIVCGHYGCG 92 (182)
T ss_pred HHHHhhcCCCCCEEEEEecCCC--CCHHHhcCCCCCCEEEEEeeccccCCCCcchhhhHHHHHHhcCCCEEEEecCCCch
Confidence 3444444345778888888874 333333322221222211 1111111 1122333333445655 8999999987
Q ss_pred ceE
Q 029673 121 TAY 123 (190)
Q Consensus 121 ~~~ 123 (190)
...
T Consensus 93 av~ 95 (182)
T cd00883 93 GVK 95 (182)
T ss_pred HHH
Confidence 643
No 198
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=27.03 E-value=1.4e+02 Score=23.25 Aligned_cols=38 Identities=3% Similarity=-0.067 Sum_probs=23.9
Q ss_pred HHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 23 FKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+.+.+...++|.|++.+--.+.+.++.+++.+.|++++
T Consensus 47 ~~~~l~~~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~ 84 (269)
T cd06297 47 LESTTLAYLTDGLLLASYDLTERLAERRLPTERPVVLV 84 (269)
T ss_pred HHHHHHhcCCCEEEEecCccChHHHHHHhhcCCCEEEE
Confidence 33334456788888887444555566666666677666
No 199
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=26.99 E-value=2e+02 Score=22.90 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHHHhhhcCCCccEEEEcCCCCC---HHHHHHHhhhC-CcEEEecCCccccc
Q 029673 20 PAKFKSMLVPGKIQHIVCTGNLCI---KEVHDYLKIIC-PDLHIIRGEYDEET 68 (190)
Q Consensus 20 ~~~l~~~~~~~~~D~vi~~GDl~~---~~~~~~l~~l~-~~~~~v~GNHD~~~ 68 (190)
.+.+.+.+.+...|+|++.|=..+ .++.+.+++.. .|++.-|||.+.-.
T Consensus 21 ~~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~~~~lPvilfPg~~~~vs 73 (230)
T PF01884_consen 21 PEEALEAACESGTDAIIVGGSDTGVTLDNVVALIKRVTDLPVILFPGSPSQVS 73 (230)
T ss_dssp HHHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHHHSSS-EEEETSTCCG--
T ss_pred cHHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHhcCCCCEEEeCCChhhcC
Confidence 344444446789999999997623 45667777754 68999999999864
No 200
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=26.94 E-value=1.4e+02 Score=24.67 Aligned_cols=69 Identities=10% Similarity=0.194 Sum_probs=42.9
Q ss_pred HHHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecCCcccccCCCC-------------ceEEEECCEEEEEee
Q 029673 21 AKFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEYDEETRYPE-------------TKTLTIGQFKLGLCH 87 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNHD~~~~~p~-------------~~~~~~~~~~i~~~H 87 (190)
+.+.+.+...++|.||++|-..+....+.+.+...|++.+-...+ ....+. ...++.+-.+|.++.
T Consensus 104 ~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P~V~i~~~~~-~~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~ 182 (333)
T COG1609 104 REYLETLLQKRVDGLILLGERPNDSLLELLAAAGIPVVVIDRSPP-GLGVPSVGIDNFAGAYLATEHLIELGHRRIAFIG 182 (333)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCEEEEeCCCc-cCCCCEEEEChHHHHHHHHHHHHHCCCceEEEEe
Confidence 344555567899999999933445667788877778887766544 111211 123344556788888
Q ss_pred cCc
Q 029673 88 GHQ 90 (190)
Q Consensus 88 g~~ 90 (190)
|+.
T Consensus 183 ~~~ 185 (333)
T COG1609 183 GPL 185 (333)
T ss_pred CCC
Confidence 764
No 201
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=26.67 E-value=60 Score=24.00 Aligned_cols=33 Identities=18% Similarity=0.024 Sum_probs=22.1
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcC--CCccEEEEcC
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVP--GKIQHIVCTG 39 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~--~~~D~vi~~G 39 (190)
|||++-||--+ ..+.+.+.+.|++ .+. .|+-.|
T Consensus 3 mkI~igsDhaG----~~lK~~l~~~L~~~~~g~-eV~D~G 37 (151)
T PTZ00215 3 KKVAIGSDHAG----FDLKNEIIDYIKNKGKEY-KIEDMG 37 (151)
T ss_pred cEEEEEeCCch----HHHHHHHHHHHHhccCCC-EEEEcC
Confidence 89999999765 2455667777765 444 345555
No 202
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.61 E-value=1.6e+02 Score=20.98 Aligned_cols=11 Identities=0% Similarity=0.138 Sum_probs=5.3
Q ss_pred CCCccEEEEcC
Q 029673 29 PGKIQHIVCTG 39 (190)
Q Consensus 29 ~~~~D~vi~~G 39 (190)
+.++|.|.+++
T Consensus 51 e~~adii~iSs 61 (132)
T TIGR00640 51 EADVHVVGVSS 61 (132)
T ss_pred HcCCCEEEEcC
Confidence 34455555444
No 203
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=26.27 E-value=94 Score=25.73 Aligned_cols=34 Identities=15% Similarity=-0.034 Sum_probs=25.1
Q ss_pred EEEEcCCCCC------HHHHHHHhhhCCcEE--EecCCcccc
Q 029673 34 HIVCTGNLCI------KEVHDYLKIICPDLH--IIRGEYDEE 67 (190)
Q Consensus 34 ~vi~~GDl~~------~~~~~~l~~l~~~~~--~v~GNHD~~ 67 (190)
.++++|+-.. .+..+.|++.+.+++ -++|+||..
T Consensus 241 ~~l~~g~~~~~~~~pNr~L~~~L~~~g~~~~yre~~GgHdw~ 282 (299)
T COG2382 241 IVLTTGGEEGDFLRPNRALAAQLEKKGIPYYYREYPGGHDWA 282 (299)
T ss_pred EEeecCCccccccchhHHHHHHHHhcCCcceeeecCCCCchh
Confidence 7888887765 466677777665555 499999975
No 204
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=26.26 E-value=1.3e+02 Score=24.19 Aligned_cols=32 Identities=6% Similarity=0.043 Sum_probs=24.6
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029673 29 PGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIR 61 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
+.+||.||..+. ...+..+.|++++.|++++.
T Consensus 89 al~PDlIi~~~~-~~~~~~~~l~~~gi~v~~~~ 120 (289)
T TIGR03659 89 SLKPTVVLSVTT-LEEDLGPKFKQLGVEATFLN 120 (289)
T ss_pred ccCCcEEEEcCc-ccHHHHHHHHHcCCcEEEEc
Confidence 578999998765 45567788999887887663
No 205
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=26.17 E-value=79 Score=23.37 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=31.0
Q ss_pred HhhhcCCCccEEEEcCCCCCH----HHHHHHhhhCCcEEEecCCcccc
Q 029673 24 KSMLVPGKIQHIVCTGNLCIK----EVHDYLKIICPDLHIIRGEYDEE 67 (190)
Q Consensus 24 ~~~~~~~~~D~vi~~GDl~~~----~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
.+++...++|.+++.-|-... .....|.+++.|+.++.=-.|..
T Consensus 71 ~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 71 RDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp HHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 444556889999999998872 23445566777888777666664
No 206
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=26.12 E-value=1.6e+02 Score=23.74 Aligned_cols=27 Identities=4% Similarity=-0.229 Sum_probs=14.8
Q ss_pred CccEEEEcCCCCCHHHHHHHhhhCCcE
Q 029673 31 KIQHIVCTGNLCIKEVHDYLKIICPDL 57 (190)
Q Consensus 31 ~~D~vi~~GDl~~~~~~~~l~~l~~~~ 57 (190)
-||.+++.-=-.+.-+...=++++.|+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPV 182 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPV 182 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCE
Confidence 499998765444433333334455555
No 207
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.98 E-value=1.3e+02 Score=22.09 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=23.5
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecC
Q 029673 29 PGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRG 62 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
+.+||.|+..+.. ..+..+.|++++.|++.+.-
T Consensus 58 ~l~PDlii~~~~~-~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 58 ALKPDLVIVSSSS-LAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred ccCCCEEEEcCCc-CHHHHHHHHHcCCcEEEeCC
Confidence 5789998876543 34467888888877777653
No 208
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=25.82 E-value=1.4e+02 Score=24.41 Aligned_cols=42 Identities=7% Similarity=-0.007 Sum_probs=24.6
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHH-HHHHHhhhCCcEEEecCC
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKE-VHDYLKIICPDLHIIRGE 63 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~-~~~~l~~l~~~~~~v~GN 63 (190)
.+.+.+.+.+||.|++.||....- ..-.-+..+.|++.+.|+
T Consensus 79 ~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g 121 (363)
T cd03786 79 GLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAG 121 (363)
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecc
Confidence 344455667999999999864311 111112235678776654
No 209
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=25.69 E-value=1.3e+02 Score=23.79 Aligned_cols=33 Identities=9% Similarity=-0.069 Sum_probs=24.8
Q ss_pred CCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029673 29 PGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIR 61 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
+.+||.|+........+.++.|++++.|++.+.
T Consensus 70 ~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~ 102 (260)
T PRK03379 70 ALKPDLVLAWRGGNAERQVDQLASLGIKVMWVD 102 (260)
T ss_pred hcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeC
Confidence 579999987654334567788998888888873
No 210
>PLN03014 carbonic anhydrase
Probab=25.53 E-value=1.2e+02 Score=25.76 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=32.5
Q ss_pred CcEEEecCCcccccCCCCceEEEECCEEEEEee--cCccCCC------CCHHHHHHHhhcCCcc-EEEECcccCcce
Q 029673 55 PDLHIIRGEYDEETRYPETKTLTIGQFKLGLCH--GHQVIPW------GDLDSLAMLQRQLDVD-ILVTGHTHQFTA 122 (190)
Q Consensus 55 ~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~H--g~~~~~~------~~~~~l~~~~~~~~~~-~~i~GH~H~~~~ 122 (190)
.|.+++.|--|.. +|...++..+--.+++.- |....+. .....++......++. ++++||++...+
T Consensus 159 ~P~alvI~CsDSR--V~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV 233 (347)
T PLN03014 159 SPKYMVFACSDSR--VCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGI 233 (347)
T ss_pred CCCEEEEEeccCC--CCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHH
Confidence 4677777877774 343333333222233222 1111110 1122344334455655 899999998743
No 211
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=25.44 E-value=89 Score=30.16 Aligned_cols=22 Identities=18% Similarity=0.522 Sum_probs=18.3
Q ss_pred CccEEEEcCC-CC-CHHHHHHHhh
Q 029673 31 KIQHIVCTGN-LC-IKEVHDYLKI 52 (190)
Q Consensus 31 ~~D~vi~~GD-l~-~~~~~~~l~~ 52 (190)
.+|+|+|+|| .. |.+.+++|+.
T Consensus 789 ~~DFvlc~GDd~~~DEdmF~~l~~ 812 (934)
T PLN03064 789 PIDYVLCIGHFLGKDEDIYTFFEP 812 (934)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHhc
Confidence 6999999999 33 7888888875
No 212
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=25.32 E-value=1.7e+02 Score=22.47 Aligned_cols=34 Identities=12% Similarity=-0.017 Sum_probs=24.7
Q ss_pred hcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 27 LVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+.+.++|.+++.|.......++.+++.+.|++++
T Consensus 51 l~~~~vdgiii~~~~~~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 51 LLERGVDGLALIGLDHSPALLDLLARRGVPYVAT 84 (268)
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE
Confidence 3356899999988655566677777767777776
No 213
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=24.68 E-value=3.4e+02 Score=21.94 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCCC----CChHHHHHhhhcCCCccEEEEcCCCCC----HHHHHHHhhhC-CcEEEecC
Q 029673 3 LVLALGDLHIPHRA----ADLPAKFKSMLVPGKIQHIVCTGNLCI----KEVHDYLKIIC-PDLHIIRG 62 (190)
Q Consensus 3 ri~~iSD~H~~~~~----~~~~~~l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~-~~~~~v~G 62 (190)
+|-+++|+|..+.. .++.+...+.+++..+|.|+.+|=-+. .+.++..++.. .|+++=.|
T Consensus 145 ~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlvGSG 213 (263)
T COG0434 145 RVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVGSG 213 (263)
T ss_pred CcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEEEecC
Confidence 46688999974322 245566666677889999999997765 34445554443 35554444
No 214
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=24.38 E-value=1.8e+02 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=24.6
Q ss_pred hcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 27 LVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+...++|.+++++...+...++.+++.+.|++.+
T Consensus 51 l~~~~~dgii~~~~~~~~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 51 LARQKVDGIILLATTITDEHREAIKKLNVPVVVV 84 (259)
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHhcCCCCEEEE
Confidence 3467999999988655556667777666677766
No 215
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=24.37 E-value=55 Score=26.40 Aligned_cols=70 Identities=7% Similarity=-0.022 Sum_probs=42.5
Q ss_pred HHhhhcCCCccEEEEc---CCCCCHHHHHHHhhhC-CcEEEecCCcccccCCCCceEEEECCEEEEEeecCccC
Q 029673 23 FKSMLVPGKIQHIVCT---GNLCIKEVHDYLKIIC-PDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVI 92 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~---GDl~~~~~~~~l~~l~-~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~ 92 (190)
|.+.++..+||.+|=+ |.++.+++++.+.+.. .|+++-.-|-....+.......++.+.+.++.-|+|+.
T Consensus 98 L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~AtGSpf~ 171 (255)
T PF03949_consen 98 LLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFATGSPFP 171 (255)
T ss_dssp HHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEESS---
T ss_pred HHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEecCCccC
Confidence 4555556688998864 5677788888888765 68999999977755433333444555567777776653
No 216
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=24.21 E-value=1.4e+02 Score=25.61 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=18.4
Q ss_pred HHHhhhcCCCccEEEEcCCCCC
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCI 43 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~ 43 (190)
.+.+++.+.+||.|++-||-..
T Consensus 83 ~~~~vl~~~kPD~VlVhGDT~t 104 (383)
T COG0381 83 GLSKVLEEEKPDLVLVHGDTNT 104 (383)
T ss_pred HHHHHHHhhCCCEEEEeCCcch
Confidence 4666677899999999999766
No 217
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=24.18 E-value=85 Score=25.14 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=26.7
Q ss_pred CccEEEEcCCCCC----HHHHHHHhhhCCcEEEecCCcccc
Q 029673 31 KIQHIVCTGNLCI----KEVHDYLKIICPDLHIIRGEYDEE 67 (190)
Q Consensus 31 ~~D~vi~~GDl~~----~~~~~~l~~l~~~~~~v~GNHD~~ 67 (190)
+-=.=+++||..- .|-.+.|++++.++..|||=--..
T Consensus 76 k~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~ 116 (254)
T COG2875 76 KDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFA 116 (254)
T ss_pred CeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHH
Confidence 3334589999765 455677888889999999975443
No 218
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=24.05 E-value=74 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=19.3
Q ss_pred CCHHHHHHHhhcCCcc-EEEECcccC
Q 029673 95 GDLDSLAMLQRQLDVD-ILVTGHTHQ 119 (190)
Q Consensus 95 ~~~~~l~~~~~~~~~~-~~i~GH~H~ 119 (190)
..++.+..+++++.+| +++.||--.
T Consensus 140 eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 140 EMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred hchHHHHHHHHHhCCCEEEEeCchhh
Confidence 3467777888899999 678899743
No 219
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=24.00 E-value=58 Score=26.59 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.6
Q ss_pred ChHHHHHhhhcCCCccEEEEcC
Q 029673 18 DLPAKFKSMLVPGKIQHIVCTG 39 (190)
Q Consensus 18 ~~~~~l~~~~~~~~~D~vi~~G 39 (190)
..++.+.+++++.+||.++++|
T Consensus 140 eqp~~i~~Ll~~~~PDIlViTG 161 (283)
T TIGR02855 140 EMPEKVLDLIEEVRPDILVITG 161 (283)
T ss_pred hchHHHHHHHHHhCCCEEEEeC
Confidence 3456677778888999999998
No 220
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=23.87 E-value=1.9e+02 Score=24.52 Aligned_cols=37 Identities=8% Similarity=-0.229 Sum_probs=24.3
Q ss_pred HHhhhcCCCccEEEEcCCCCC--HHHHHHHhhhCCcEEEe
Q 029673 23 FKSMLVPGKIQHIVCTGNLCI--KEVHDYLKIICPDLHII 60 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~~~~~~v 60 (190)
+.+++++.+||.|+..| ..+ .......+.++.|+++.
T Consensus 81 ~~~~l~~~kPd~vi~~g-~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 81 VVQLAKQAKPDLLVGID-APDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHhcCCCEEEEeC-CCCccHHHHHHHhhCCCCEEEE
Confidence 34456788999999999 666 22333445566777764
No 221
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=23.70 E-value=1.9e+02 Score=22.16 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=23.2
Q ss_pred hcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 27 LVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+...++|.||+.+.-.+...++.+++.+.|++++
T Consensus 51 l~~~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~ 84 (265)
T cd06299 51 LLSQRVDGIIVVPHEQSAEQLEDLLKRGIPVVFV 84 (265)
T ss_pred HHhcCCCEEEEcCCCCChHHHHHHHhCCCCEEEE
Confidence 3457899999987544444566776666677665
No 222
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.67 E-value=2e+02 Score=19.93 Aligned_cols=40 Identities=10% Similarity=-0.113 Sum_probs=24.9
Q ss_pred HhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecCC
Q 029673 24 KSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGE 63 (190)
Q Consensus 24 ~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GN 63 (190)
..+++..+.+.+....+....+..+...+..+.++.+.+.
T Consensus 20 ~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~ 59 (122)
T cd02071 20 ARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSL 59 (122)
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccc
Confidence 3344566777777777755556666666666666666555
No 223
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=23.41 E-value=1.6e+02 Score=22.91 Aligned_cols=39 Identities=8% Similarity=-0.109 Sum_probs=23.3
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcE--------------EEecCCccccc
Q 029673 30 GKIQHIVCTGNLCIKEVHDYLKIICPDL--------------HIIRGEYDEET 68 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~--------------~~v~GNHD~~~ 68 (190)
..||.|+++.=..+.-++..-++++.|+ |.+|||.|...
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~ 165 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRK 165 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHH
Confidence 3688888887555543333333343332 67888877753
No 224
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=23.39 E-value=2.5e+02 Score=19.17 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=31.3
Q ss_pred hhhcCCCccEEEEcCCCCC--HHHHHHHhhhC-CcEEEecCCcccc
Q 029673 25 SMLVPGKIQHIVCTGNLCI--KEVHDYLKIIC-PDLHIIRGEYDEE 67 (190)
Q Consensus 25 ~~~~~~~~D~vi~~GDl~~--~~~~~~l~~l~-~~~~~v~GNHD~~ 67 (190)
+.+...++-.|++++..-. ++-+++-++|. .|++.-+||.-..
T Consensus 29 K~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~Gt~~eL 74 (100)
T COG1911 29 KSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEGTSVEL 74 (100)
T ss_pred HHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecCCceeH
Confidence 3345688999999998765 44566666664 6899999987664
No 225
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=23.36 E-value=1.8e+02 Score=18.56 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=27.3
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
.+.+++...++|.||+.+ +.+.....|++.+..++..
T Consensus 44 ~~~~~l~~~~v~~li~~~--iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICGG--IGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp HHHHHHHHTTESEEEESC--SCHHHHHHHHHTTSEEEES
T ss_pred hHHHHHHHcCCCEEEEeC--CCHHHHHHHHHCCCEEEEc
Confidence 345555458999999888 5777788898887766664
No 226
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=23.36 E-value=5.9e+02 Score=23.43 Aligned_cols=82 Identities=16% Similarity=0.080 Sum_probs=48.6
Q ss_pred ccEEEEcCCCCC-HHHHHHHhhhCCcEEEecCCcccccCCCCceEEEECCEEEEEeecCccCCCC---------------
Q 029673 32 IQHIVCTGNLCI-KEVHDYLKIICPDLHIIRGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWG--------------- 95 (190)
Q Consensus 32 ~D~vi~~GDl~~-~~~~~~l~~l~~~~~~v~GNHD~~~~~p~~~~~~~~~~~i~~~Hg~~~~~~~--------------- 95 (190)
..-|+.+|+++. +.+.+.|++.+. .++. ....+|. ++.-|+=+||-+.....
T Consensus 30 ~~~i~~lg~ivHN~~vv~~l~~~Gv--~~v~----~~~~~~~------~~~vii~aHG~~~~~~~~~~~~~~~viDaTCP 97 (647)
T PRK00087 30 KGKIYTLGPLIHNNQVVEKLKKKGI--KPIE----DIDELNE------GDTIIIRSHGVPPEVLEELKDKGLKVIDATCP 97 (647)
T ss_pred CCCEEEeCCCcCCHHHHHHHHHCCC--EEeC----CHhhCCC------CCEEEEeCCCCCHHHHHHHHHCCCeEEECCCc
Confidence 467999999998 888999999874 4442 2223442 33445557775421100
Q ss_pred CHHHHH---HHhhcCCccEEEECcccCcceEEe
Q 029673 96 DLDSLA---MLQRQLDVDILVTGHTHQFTAYKH 125 (190)
Q Consensus 96 ~~~~l~---~~~~~~~~~~~i~GH~H~~~~~~~ 125 (190)
-..... +...+.+..+++.|+-..|...-.
T Consensus 98 ~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~ 130 (647)
T PRK00087 98 FVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGI 130 (647)
T ss_pred CchHHHHHHHHHHhCCCEEEEEeCCCCCeeeee
Confidence 011111 222244888999999888866443
No 227
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=23.01 E-value=1.6e+02 Score=22.50 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHhhcCCcc-EEEECcccCcce
Q 029673 100 LAMLQRQLDVD-ILVTGHTHQFTA 122 (190)
Q Consensus 100 l~~~~~~~~~~-~~i~GH~H~~~~ 122 (190)
++......+++ +++|||+....+
T Consensus 77 leyav~~l~v~~ivV~GH~~Cgav 100 (190)
T cd00884 77 IEYAVAVLKVEHIVVCGHSDCGGI 100 (190)
T ss_pred HHHHHHHhCCCEEEEeCCCcchHH
Confidence 33333444554 899999998754
No 228
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=22.99 E-value=57 Score=25.45 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=13.6
Q ss_pred HHHHhhhcCCCccEEEEcC
Q 029673 21 AKFKSMLVPGKIQHIVCTG 39 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~G 39 (190)
+.+.+++++.+||.|+++|
T Consensus 51 ~~l~~~~~~~~Pd~vi~~G 69 (211)
T PRK13196 51 AALSRLLDELQPSAVLLTG 69 (211)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 3455566667888888888
No 229
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=22.94 E-value=1.2e+02 Score=19.26 Aligned_cols=58 Identities=9% Similarity=-0.010 Sum_probs=30.8
Q ss_pred eEEEEEecCCCCCCCCChHHHHHhhhcCCCccEEEEcCCC-CC-HHHHHHH-hhhCCcEEEec
Q 029673 2 VLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIVCTGNL-CI-KEVHDYL-KIICPDLHIIR 61 (190)
Q Consensus 2 mri~~iSD~H~~~~~~~~~~~l~~~~~~~~~D~vi~~GDl-~~-~~~~~~l-~~l~~~~~~v~ 61 (190)
|||++.+--...+. ..+...|.++. +..++.+|+.|.- .. ....+.. ++.+.++...+
T Consensus 4 ~rVli~GgR~~~D~-~~i~~~Ld~~~-~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 4 MRVLITGGRDWTDH-ELIWAALDKVH-ARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFP 64 (71)
T ss_pred CEEEEEECCccccH-HHHHHHHHHHH-HhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeC
Confidence 78888887765322 12334555554 3457787777766 43 2222222 33344454444
No 230
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.60 E-value=1.7e+02 Score=18.99 Aligned_cols=38 Identities=8% Similarity=-0.088 Sum_probs=28.0
Q ss_pred HHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecC
Q 029673 23 FKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRG 62 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
..+++...++|.|++.+ +.+..+..|++.+..++...+
T Consensus 53 ~~~~l~~~~v~~vi~~~--iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVGG--IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEcc--cCccHHHHHHHcCCEEEEcCC
Confidence 34445568999999988 666778888888777766654
No 231
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=22.30 E-value=2.2e+02 Score=19.62 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=26.7
Q ss_pred HHhhhcCCCccEEEEcCCCCC----HHHHHHHhhhCCcEEEecCCccc
Q 029673 23 FKSMLVPGKIQHIVCTGNLCI----KEVHDYLKIICPDLHIIRGEYDE 66 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~----~~~~~~l~~l~~~~~~v~GNHD~ 66 (190)
+.++..+.++|.|.++.=..+ .++.+.+++..+...++.|..-.
T Consensus 31 ~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~ 78 (127)
T cd02068 31 VEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHA 78 (127)
T ss_pred HHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcch
Confidence 344332379999999984444 34566777776655555555433
No 232
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.22 E-value=97 Score=20.97 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=22.0
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecC
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRG 62 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~G 62 (190)
.+..++++.+.+..++-.+....+..+.+++..+.++.+..
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEc
Confidence 34445555566666553333334555666666666666654
No 233
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=21.61 E-value=2.1e+02 Score=21.88 Aligned_cols=39 Identities=5% Similarity=-0.029 Sum_probs=23.5
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
.+.+++.+.++|.+++.+--.+...++.+.+.+.|++++
T Consensus 50 ~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~ 88 (268)
T cd06271 50 VYRRLVESGLVDGVIISRTRPDDPRVALLLERGFPFVTH 88 (268)
T ss_pred HHHHHHHcCCCCEEEEecCCCCChHHHHHHhcCCCEEEE
Confidence 445555556789888876433333455666666677765
No 234
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic. This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=21.58 E-value=2.1e+02 Score=18.89 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=21.0
Q ss_pred ECCEEEEEeecCccCCCC-CHHHHHHHhhcCCccEEEECc
Q 029673 78 IGQFKLGLCHGHQVIPWG-DLDSLAMLQRQLDVDILVTGH 116 (190)
Q Consensus 78 ~~~~~i~~~Hg~~~~~~~-~~~~l~~~~~~~~~~~~i~GH 116 (190)
.+..-+.++|.||.++.. ..+++ ..++....+++|.|-
T Consensus 54 ~~~~~v~i~HsHP~g~~~PS~~D~-~~~~~~~~~~iIv~~ 92 (101)
T cd08059 54 IGMKVVGLVHSHPSGSCRPSEADL-SLFTRFGLYHVIVCY 92 (101)
T ss_pred CCCcEEEEEecCcCCCCCCCHHHH-HHHHhcCCeEEEEEC
Confidence 345567888888764332 22332 234445667666653
No 235
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=21.53 E-value=1.9e+02 Score=22.69 Aligned_cols=38 Identities=11% Similarity=-0.082 Sum_probs=22.6
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcE--------------EEecCCcccc
Q 029673 30 GKIQHIVCTGNLCIKEVHDYLKIICPDL--------------HIIRGEYDEE 67 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~--------------~~v~GNHD~~ 67 (190)
..||.|++++=.-+.-++..-.+++.|+ |.+|||.|..
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~ 205 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAI 205 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchH
Confidence 4699999988554433333333443333 6677776654
No 236
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=21.53 E-value=1.8e+02 Score=24.45 Aligned_cols=39 Identities=8% Similarity=-0.064 Sum_probs=24.5
Q ss_pred CCccEEEEcCCCCCHHHHHHHhhhCCcE--------------EEecCCccccc
Q 029673 30 GKIQHIVCTGNLCIKEVHDYLKIICPDL--------------HIIRGEYDEET 68 (190)
Q Consensus 30 ~~~D~vi~~GDl~~~~~~~~l~~l~~~~--------------~~v~GNHD~~~ 68 (190)
..||.||+++=..+.-++..-.+++.|+ |.+|||.|...
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~ 203 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGR 203 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHH
Confidence 4799999988555533333333343332 77899988763
No 237
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=21.51 E-value=2e+02 Score=22.09 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=23.1
Q ss_pred cCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 28 VPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 28 ~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
...++|.|++.+...+.+.++.+++.+.|++.+
T Consensus 52 ~~~~vdgiii~~~~~~~~~~~~l~~~~ipvV~~ 84 (268)
T cd06298 52 LAKQVDGIIFMGGKISEEHREEFKRSPTPVVLA 84 (268)
T ss_pred HHhcCCEEEEeCCCCcHHHHHHHhcCCCCEEEE
Confidence 357899999987544556667776666677665
No 238
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=21.35 E-value=2.4e+02 Score=23.45 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=13.7
Q ss_pred CCccEEEEcC-CCCCHHHHHHHh
Q 029673 30 GKIQHIVCTG-NLCIKEVHDYLK 51 (190)
Q Consensus 30 ~~~D~vi~~G-Dl~~~~~~~~l~ 51 (190)
.+.|.+++.+ +-++.++++.+.
T Consensus 44 ~~~d~ii~~~~~~~~~~~l~~~~ 66 (330)
T PRK12480 44 KDYDGVTTMQFGKLENDVYPKLE 66 (330)
T ss_pred CCCCEEEEecCCCCCHHHHHhhh
Confidence 5678777765 456666655553
No 239
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=21.16 E-value=2.2e+02 Score=22.85 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=24.1
Q ss_pred hcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEe
Q 029673 27 LVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHII 60 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v 60 (190)
+...++|.||+.|.-.+.+..+.+++.+.|++++
T Consensus 111 l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~ 144 (329)
T TIGR01481 111 LLSKQVDGIIFMGGTITEKLREEFSRSPVPVVLA 144 (329)
T ss_pred HHhCCCCEEEEeCCCCChHHHHHHHhcCCCEEEE
Confidence 3457899999988655555667777766777766
No 240
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.82 E-value=1.5e+02 Score=24.24 Aligned_cols=33 Identities=6% Similarity=-0.101 Sum_probs=25.5
Q ss_pred CCCccEEEEcCCCCC----HHHHHHHhhhCCcEEEec
Q 029673 29 PGKIQHIVCTGNLCI----KEVHDYLKIICPDLHIIR 61 (190)
Q Consensus 29 ~~~~D~vi~~GDl~~----~~~~~~l~~l~~~~~~v~ 61 (190)
+.+||.||..+.... .+..+.|++++.|++.+.
T Consensus 89 ~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~ 125 (342)
T cd01139 89 TLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVD 125 (342)
T ss_pred hcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEe
Confidence 579999998766532 467788988888888875
No 241
>COG2262 HflX GTPases [General function prediction only]
Probab=20.81 E-value=2.9e+02 Score=23.99 Aligned_cols=62 Identities=23% Similarity=0.131 Sum_probs=38.3
Q ss_pred EEEecCCCCCCC--CChHHHHHhhh-cCCCccEEEEcCCCCCHH-------HHHHHhhhC---CcEEEecCCccc
Q 029673 5 LALGDLHIPHRA--ADLPAKFKSML-VPGKIQHIVCTGNLCIKE-------VHDYLKIIC---PDLHIIRGEYDE 66 (190)
Q Consensus 5 ~~iSD~H~~~~~--~~~~~~l~~~~-~~~~~D~vi~~GDl~~~~-------~~~~l~~l~---~~~~~v~GNHD~ 66 (190)
++++||=+.-+. ..+.++|.+-+ +....|.++|.=|..+++ +.+.|++++ .|++.|.---|.
T Consensus 242 vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 242 VLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred EEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 577888763221 12233444433 346899999999999943 344556653 577777766554
No 242
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=20.71 E-value=1.1e+02 Score=19.35 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=18.1
Q ss_pred HHHHHHhhcCCccEEEECcccCcc
Q 029673 98 DSLAMLQRQLDVDILVTGHTHQFT 121 (190)
Q Consensus 98 ~~l~~~~~~~~~~~~i~GH~H~~~ 121 (190)
..+.+.+++.++++++.||.-.-.
T Consensus 38 ~~~~~~a~~~~~~~Iv~G~~~~d~ 61 (86)
T cd01984 38 RILKRLAAEEGADVIILGHNADDV 61 (86)
T ss_pred HHHHHHHHHcCCCEEEEcCCchhh
Confidence 345567778899999999986543
No 243
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=20.70 E-value=70 Score=26.24 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=17.5
Q ss_pred hHHHHHhhhcCCCccEEEEcC
Q 029673 19 LPAKFKSMLVPGKIQHIVCTG 39 (190)
Q Consensus 19 ~~~~l~~~~~~~~~D~vi~~G 39 (190)
.++.+.+++.+.+||.|+++|
T Consensus 142 qp~~i~~Ll~~~~PDIlViTG 162 (287)
T PF05582_consen 142 QPEKIYRLLEEYRPDILVITG 162 (287)
T ss_pred hhHHHHHHHHHcCCCEEEEeC
Confidence 455677778889999999998
No 244
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=20.66 E-value=94 Score=22.81 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=14.0
Q ss_pred HHHHhhhcCCCccEEEEcCCCCC
Q 029673 21 AKFKSMLVPGKIQHIVCTGNLCI 43 (190)
Q Consensus 21 ~~l~~~~~~~~~D~vi~~GDl~~ 43 (190)
+.|.+++.+.+||.|.+.|.-.+
T Consensus 53 ~~l~~~i~~~kP~vI~v~g~~~~ 75 (150)
T PF14639_consen 53 ERLKKFIEKHKPDVIAVGGNSRE 75 (150)
T ss_dssp HHHHHHHHHH--SEEEE--SSTH
T ss_pred HHHHHHHHHcCCeEEEEcCCChh
Confidence 45667778889999999886444
No 245
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=20.60 E-value=1.9e+02 Score=18.88 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=23.7
Q ss_pred HHHhhhcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEec
Q 029673 22 KFKSMLVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIR 61 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~ 61 (190)
.+.+.+.+.++|.|++.+ +.+..+..|++.+..++...
T Consensus 54 ~~~~~l~~~~v~~vi~~~--iG~~~~~~l~~~gI~v~~~~ 91 (103)
T cd00851 54 KAAEFLADEGVDVVIVGG--IGPRALNKLRNAGIKVYKGA 91 (103)
T ss_pred HHHHHHHHcCCCEEEeCC--CCcCHHHHHHHCCCEEEEcC
Confidence 344445557888888865 44556777777665555444
No 246
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=20.60 E-value=67 Score=25.35 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=14.7
Q ss_pred HHHhhhcCCCccEEEEcCC
Q 029673 22 KFKSMLVPGKIQHIVCTGN 40 (190)
Q Consensus 22 ~l~~~~~~~~~D~vi~~GD 40 (190)
.+.+++++.+||.||++|=
T Consensus 52 ~l~~~i~~~~Pd~Vi~~G~ 70 (222)
T PRK13195 52 AAQQAIAEIEPALVIMLGE 70 (222)
T ss_pred HHHHHHHHHCCCEEEEeCc
Confidence 4555666779999999993
No 247
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=20.48 E-value=94 Score=25.02 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=9.2
Q ss_pred eEEEEEecCCC
Q 029673 2 VLVLALGDLHI 12 (190)
Q Consensus 2 mri~~iSD~H~ 12 (190)
|||++++....
T Consensus 1 MkIl~~~~~~~ 11 (365)
T cd03825 1 MKVLHLNTSDI 11 (365)
T ss_pred CeEEEEecCCC
Confidence 89999998764
No 248
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=20.45 E-value=1.5e+02 Score=25.05 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=24.2
Q ss_pred CccEEEEcCCCCC-----HHHHHHHhhhCCcEEEecCCcc
Q 029673 31 KIQHIVCTGNLCI-----KEVHDYLKIICPDLHIIRGEYD 65 (190)
Q Consensus 31 ~~D~vi~~GDl~~-----~~~~~~l~~l~~~~~~v~GNHD 65 (190)
+||.|+++|=+.. +.+.+.++.+ .|++..||.-+
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~-a~v~~~pg~~e 331 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFI-APVLVYPGEDE 331 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhh-CCEEEeCCcHH
Confidence 7999999998876 2233344444 68999999543
No 249
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.35 E-value=2.4e+02 Score=19.65 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=27.3
Q ss_pred HHhhhcCCCccEEEEcCCCCCHHHHHHHh----hhCCcEEEecCCccc
Q 029673 23 FKSMLVPGKIQHIVCTGNLCIKEVHDYLK----IICPDLHIIRGEYDE 66 (190)
Q Consensus 23 l~~~~~~~~~D~vi~~GDl~~~~~~~~l~----~l~~~~~~v~GNHD~ 66 (190)
..+.+++.+.-.|++++|....+....+. ..+.|++++. +-+.
T Consensus 34 v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~-sk~e 80 (117)
T TIGR03677 34 VTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVK-KKED 80 (117)
T ss_pred HHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeC-CHHH
Confidence 44556678899999999987754444443 2346755544 4443
No 250
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=20.28 E-value=2.5e+02 Score=21.42 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=24.8
Q ss_pred hcCCCccEEEEcCCCCCHHHHHHHhhhCCcEEEecCCc
Q 029673 27 LVPGKIQHIVCTGNLCIKEVHDYLKIICPDLHIIRGEY 64 (190)
Q Consensus 27 ~~~~~~D~vi~~GDl~~~~~~~~l~~l~~~~~~v~GNH 64 (190)
+...++|.|++.+-..+.+.++.+.+.+.|++.+ ++.
T Consensus 51 l~~~~vdgiii~~~~~~~~~~~~~~~~~ipvv~~-~~~ 87 (268)
T cd01575 51 LLSRRPAGLILTGLEHTERTRQLLRAAGIPVVEI-MDL 87 (268)
T ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHhcCCCEEEE-ecC
Confidence 3457899999988444445566676666677766 443
Done!